BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045498
         (207 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD+  ++ F  +   Y   ING CKI +ID A+       +K    D   Y++L++GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA+G   +LVTY+ L+    +      AMALL+ +E      +I+V
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQV 443

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG+CR G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL ++M 
Sbjct: 444 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              C PD  ++NT+ +GFL  NET RA   L++
Sbjct: 504 GNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 536



 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 18/212 (8%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCT 52
           FD + ++ F+ N   YG  ING+CK+    +AI+      +G C  DV +Y+S+I+ LC 
Sbjct: 149 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 208

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             ++ EA  LF +MV QGI+ ++ TY  L+H       W+         LL  +   K  
Sbjct: 209 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH-----VTTLLNQMVNSKIL 263

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++ ++S V+D LC+ G+  EA + +D + ++G+ P VVTY  L++G C +  + EA K+
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              M  KG  PD  S+ T+I G+   ++ D+A
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 355



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   ++ +CK   + E    +D  I++G+  DV  Y++L++G C  + + EAV++FD M
Sbjct: 268 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 327

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   ++++Y  LI+   +      AM L + + R ++  + + Y+ ++ GLC VGR 
Sbjct: 328 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++  +G +P +VTY+IL++ LCK   + EA  LL  ++     PD   +N +
Sbjct: 388 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNII 447

Query: 187 IQGFLVKNETDRA 199
           I G     E + A
Sbjct: 448 IDGMCRAGELEAA 460



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 90  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 149

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + ++ +Y+ +ID LC+ 
Sbjct: 150 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 209

Query: 123 -------------VGR---------------------WEEARKKLDQLSEKGLVPGVVTY 148
                        VG+                     W+     L+Q+    ++P VV +
Sbjct: 210 RQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIF 269

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +++ LCK+G + EA +++  M ++G  PD  ++ T++ G  +++E D A
Sbjct: 270 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA 320



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 102/206 (49%), Gaps = 7/206 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           Q    +   Y   ++ +C + E       ++  +   I  DV ++S++++ LC   ++ E
Sbjct: 225 QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTE 284

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A E+ D M+ +G+  ++VTY  L+  +  +     A+ +   + R  +  ++  Y+ +I+
Sbjct: 285 AHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLIN 344

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C++ + ++A    +++  K  +P   TYN L++GLC  G + +A  L  +M  +G  P
Sbjct: 345 GYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMP 404

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D  +++ ++         + A + LK
Sbjct: 405 DLVTYSILLDSLCKNCHLEEAMALLK 430



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  VY I I+GMC+  E+++A         KG+   V+ Y+ +I+GLC    L EA +LF
Sbjct: 440 DIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF 499

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M     + +  TYN +     +      A+ LL+ +    +  ++   +L+++ L   
Sbjct: 500 MEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDD 559

Query: 124 G 124
           G
Sbjct: 560 G 560



 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+   G+ P V T NILIN  C    +  A  +L ++ + G  PD T+F T+I+G  V+ 
Sbjct: 81  QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 140

Query: 195 ETDRASSFLKK 205
           +   A     K
Sbjct: 141 KIGEALHLFDK 151


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 130/211 (61%), Gaps = 9/211 (4%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            L ++  K N   Y I ING CK ++ID A +       KG+      Y++LI  LC   R
Sbjct: 1251 LADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR 1310

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            ++ A +LF +M   G   +L TY  L+ D   K G    AM L Q++++ +++ NIEV+S
Sbjct: 1311 VRTAQKLFVEMQTCGQFLKLSTYCVLL-DGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFS 1369

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++DG+CR G+ EEA K+ D++S+ GL P  + YNILINGLC KGM+ EA KLL QM+EK
Sbjct: 1370 ILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK 1429

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC PDS +FN +IQ  L +NE   A   L++
Sbjct: 1430 GCLPDSITFNVIIQNLLKENEIHEAIQLLEE 1460



 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 9/205 (4%)

Query: 9    KGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
            KG+   YG+ I+ +CK       +      I  GI  DV VYSSL++GLC F RLKEA+E
Sbjct: 1082 KGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALE 1141

Query: 62   LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGL 120
             F +M  +GI+A++ TYN LIH    + G +  +     L  D+ +  +   ++++IDGL
Sbjct: 1142 FFKEMEGRGISADVYTYNSLIH-GLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGL 1200

Query: 121  CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            C+ G+  EA++ L+ +  KG  P ++TYN L+NGLC  G + +A KL   + ++G   + 
Sbjct: 1201 CKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 1260

Query: 181  TSFNTVIQGFLVKNETDRASSFLKK 205
             S+N +I G+    + D A  F ++
Sbjct: 1261 FSYNILINGYCKDQKIDEAFRFFEE 1285



 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 8/210 (3%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-----KGICL-DVFVYSSLINGLCTFNR 55
            ++T++   G+   YGI ING+CK R+   AIK     KG C  DVF Y  +I+ LC    
Sbjct: 1041 EMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGM 1100

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
              EA+++F +M+  GI  ++V Y+ L+ D   + GR   A+   + +E      ++  Y+
Sbjct: 1101 TTEALDMFSEMIGAGILPDVVVYSSLM-DGLCRFGRLKEALEFFKEMEGRGISADVYTYN 1159

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +I GL R G W+E    L+ + ++G  P   T+ ILI+GLCK+G + EA ++L  M+ K
Sbjct: 1160 SLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHK 1219

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            G  PD  ++NT++ G  +  + + A+   +
Sbjct: 1220 GKEPDILTYNTLMNGLCLVGQLEDATKLFE 1249



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            + ++ F  +   + I I+G+CK  ++  A +       KG   D+  Y++L+NGLC   +
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            L++A +LF+ +  +GI   + +YN LI+   + Q    A    + +     + +   Y+ 
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 116  VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +I  LC+ GR   A+K   ++   G    + TY +L++GLCK G + EA  L   +K+  
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 176  CFPDSTSFNTVIQGF 190
              P+   F+ ++ G 
Sbjct: 1361 HKPNIEVFSILLDGM 1375



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 88/160 (55%), Gaps = 3/160 (1%)

Query: 32   IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
            +K+G   D    ++L+ G+   N + +AV+LFD+M  +G+  +  TY  LI  N   + R
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILI--NGLCKAR 1065

Query: 92   FSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             + +A+ L    +   + ++  Y ++ID LC+ G   EA     ++   G++P VV Y+ 
Sbjct: 1066 KTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSS 1125

Query: 151  LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            L++GLC+ G + EA +   +M+ +G   D  ++N++I G 
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 42/173 (24%)

Query: 14   VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y + ++G+CK   ++ A+       K     ++ V+S L++G+C   +L+EA + FD++
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
               G+  + + YN                                   ++I+GLC  G  
Sbjct: 1392 SKNGLEPDTIAYN-----------------------------------ILINGLCNKGML 1416

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             EA K L Q+ EKG +P  +T+N++I  L K+  I EA +LL +M+ +   PD
Sbjct: 1417 SEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD 1469



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 35   GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
            GI  D++  + LI+  C+   +     +F   + +G   + VT   L+   W + G   A
Sbjct: 976  GIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDA 1035

Query: 95   MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILIN 153
            + L   + +     + + Y ++I+GLC+  +   A K  +++  KG   G V TY ++I+
Sbjct: 1036 VQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM--KGNCKGDVFTYGMIID 1093

Query: 154  GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LCK GM  EA  +  +M   G  PD   +++++ G         A  F K+
Sbjct: 1094 ALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 1145



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 9    KGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
            K N  V+ I ++GMC+        ++ D   K G+  D   Y+ LINGLC    L EAV+
Sbjct: 1362 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 1421

Query: 62   LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            L  +M  +G   + +T+N +I +  ++     A+ LL+ +    +  +  V S+++    
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 1481

Query: 122  RVGRWEEARKKLDQLSEKGL 141
               +W  A   L    +KG+
Sbjct: 1482 FDPQWHAALVSLPNALQKGV 1501


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 8/213 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +    +  N   Y   ING CKI+ +D A        +K +  +   Y++L++GLC 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA G   +L TY  L+    +K     AMALL+T+E    + +I++
Sbjct: 395 VGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQI 454

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++VIDG+CR G  E AR     LS KGL P V TY I+INGLC++G++ EA+KL ++M 
Sbjct: 455 YTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 514

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC PD  ++NT+ QG L   E  RA   L++
Sbjct: 515 GNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE 547



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 17/210 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+   ++AI+      +G C  DV VY+S+I+ LC   ++ EA 
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            LF KMV QGI+ ++ TY  LIH       W+         LL  +   K   ++ ++S 
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKH-----VTTLLNQMINSKIMPDVVIFST 282

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+D LC+ G+  EA   +D +  +G+ P VVTYN L++G C +  + EA K+   M   G
Sbjct: 283 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P+  S+NT+I G+      D+A+   ++
Sbjct: 343 YAPNVISYNTLINGYCKIQRMDKATYLFEE 372



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           Q    +   Y   I+ +C + E       ++  I   I  DV ++S++++ LC   ++ E
Sbjct: 236 QGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITE 295

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++ D M+ +G+   +VTYN L+  +  +     A+ +  T+  + Y  N+  Y+ +I+
Sbjct: 296 AHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLIN 355

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C++ R ++A    +++ +K L+P  VTYN L++GLC  G + +A  L  +M   G  P
Sbjct: 356 GYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIP 415

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D  ++  ++     K+  D A + LK
Sbjct: 416 DLATYRILLDYLCKKSHLDEAMALLK 441



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   ++ +CK   I E    +D  I +G+  +V  Y++L++G C  + + EAV++FD M
Sbjct: 279 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM 338

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G    +++YN LI+   + Q    A  L + + + +   N   Y+ ++ GLC VGR 
Sbjct: 339 VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++   G +P + TY IL++ LCKK  + EA  LL  ++     PD   +  V
Sbjct: 399 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 458

Query: 187 IQGFLVKNETDRA 199
           I G     E + A
Sbjct: 459 IDGMCRAGELEAA 471



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 46/245 (18%)

Query: 1   FDLTEQR----FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           F L+ Q        + +   I IN  C +     A       +K G+  D   +++LI G
Sbjct: 87  FSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRG 146

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   ++ +A+ LFDKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + +
Sbjct: 147 LCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPD 206

Query: 110 IEVYSLVIDGLCR--------------VGR---------------------WEEARKKLD 134
           + VY+ +ID LC+              VG+                     W+     L+
Sbjct: 207 VVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLN 266

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+    ++P VV ++ +++ LCK+G I EA  ++  M  +G  P+  ++N ++ G  +++
Sbjct: 267 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 326

Query: 195 ETDRA 199
           E D A
Sbjct: 327 EMDEA 331



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +    +      L ++M + GI  ++ T N LI+          A ++L  + 
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKIL 129

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +   + +   ++ +I GLC  G+  +A    D++  +G  P VVTY  LINGLCK G   
Sbjct: 130 KLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTN 189

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A +LL  M++  C PD   + ++I       +   A +   K
Sbjct: 190 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 232


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING C+I+ +D A+        +G+  D   Y++LI+GLC   RL+ A+ LF
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 488

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AM LL+ +E    + +I VY++ IDG+CR 
Sbjct: 489 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 548

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL  +M E GC  D   +
Sbjct: 549 GELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIY 608

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+I+GFL  NET  A+  L++
Sbjct: 609 NTIIRGFLRSNETFGATQLLQE 630



 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   YG  +NG+CK       IR + S ++K    +V  Y+++I+ LC   ++ EA 
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +M+ +GI+ ++ TYN LIH             LL  +   K   N+ V+S V+D L
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 370

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G    A   +D + ++G+ P VVTY  L++G C +  + EA K+   M  KGC P+ 
Sbjct: 371 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 430

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            S+N +I G+      D+A   L++
Sbjct: 431 RSYNILINGYCQIQRMDKAMGLLEQ 455



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   +   N  V+   ++ +CK   I       D  IK+G+  DV  Y++L++G C  +
Sbjct: 350 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS 409

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV +G    + +YN LI+   + Q    AM LL+ +       +   Y+
Sbjct: 410 EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYN 469

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VGR + A     ++   G +P +VTY IL++ LCK   + EA  LL  ++  
Sbjct: 470 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 529

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
               D   +N  I G     E + A
Sbjct: 530 NLDADILVYNIAIDGMCRAGELEAA 554



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 43/235 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  + N   Y   I+ +CK R++  A       I KGI  D+F Y+SLI+ LC    
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 340

Query: 56  LKEAVELF-----------------------------------DKMVAQGITAELVTYNP 80
            K    L                                    D M+ +G+  ++VTY  
Sbjct: 341 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 400

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L+  +  +     A+ +  T+       N+  Y+++I+G C++ R ++A   L+Q+S +G
Sbjct: 401 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 460

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           L+   VTYN LI+GLC  G +  A  L  +M   G  PD  ++  ++  +L KN 
Sbjct: 461 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLD-YLCKNH 514



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN  C +R +  A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 184 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 243

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DK + +G   ++VTY  L++   +     +A+ LL+++ +     N+  Y+ +ID LC+ 
Sbjct: 244 DKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 303

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------- 152
            +  EA     ++  KG+ P + TYN LI                               
Sbjct: 304 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 363

Query: 153 ----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               + LCK+GMI  A  ++  M ++G  PD  ++  ++ G  +++E D A
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 414



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+  + LIN  C   RL  A  +  K++  G   +  T+N LI     +     A
Sbjct: 180 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 239

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L      + ++ ++  Y  +++GLC+VG    A + L  + +K   P V+ YN +I+ 
Sbjct: 240 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 299

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK   + EA  L  +M  KG  PD  ++N++I   
Sbjct: 300 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 335



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +         + L  +M + GI  ++ T N LI+     +    A ++L  L 
Sbjct: 153 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 212

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +   + +   ++ +I GLC  G+  EA    D+   +G  P VVTY  L+NGLCK G   
Sbjct: 213 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 272

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            A +LL  M +K C P+  ++NT+I   
Sbjct: 273 AAIRLLRSMVQKNCRPNVIAYNTIIDSL 300



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+        V +  L+  +  K   +S +  L T + D + +  +V
Sbjct: 128 FNTLDDALSSFNRMLHMHPPPSTVDFTKLL-TSIAKMKHYSTVLSLST-QMDSFGIPPDV 185

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  +I+  C + R   A   L +L + G  P   T+N LI GLC +G I EA  L  +
Sbjct: 186 YTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDK 245

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +G  PD  ++ T++ G      T  A   L+ 
Sbjct: 246 TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 280



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 15/139 (10%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY I I+GMC+  E+++A         KG+  DV  Y+ +I+GLC    L EA +LF KM
Sbjct: 537 VYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 596

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G + +   YN +I         F A  LLQ +  + +  ++   +L+++ L   G  
Sbjct: 597 DENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDG-- 654

Query: 127 EEARKKLDQLSEKGLVPGV 145
                 LDQ  E+  + GV
Sbjct: 655 ------LDQSFERLRLRGV 667



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+   G+ P V T NILIN  C    +  A  +L ++ + GC PD+T+FNT+I+G  V+ 
Sbjct: 175 QMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEG 234

Query: 195 ETDRASSFLKKNM 207
           +   A     K +
Sbjct: 235 KIGEALHLFDKTI 247



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L+ +  + +   Y I I+G+CK   +D A K        G   D  +Y+++I G    N
Sbjct: 560 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSN 619

Query: 55  RLKEAVELFDKMVAQGITAELVT 77
               A +L  +M+A+G +A++ T
Sbjct: 620 ETFGATQLLQEMLAEGFSADVST 642


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L ++  K N   Y I ING CK ++ID A +       KG+      Y++LI  LC   R
Sbjct: 312 LADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR 371

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++ A +LF +M   G   +L TY  L+ D   K G    A+ L Q++++ +++ NIEV+S
Sbjct: 372 VRTAQKLFVEMQTCGQFLKLSTYCVLL-DGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFS 430

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DG+CR G+ EEA K+ D++S+ GL P  + YNILINGLC KGM+ EA KLL QM+EK
Sbjct: 431 ILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK 490

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PDS +FN +IQ  L +NE   A   L++
Sbjct: 491 GCLPDSITFNVIIQNLLKENEIHEAIQLLEE 521



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 123/262 (46%), Gaps = 76/262 (29%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK---------------------------- 33
           ++TE+   G+   YGI ING+CK R+   AIK                            
Sbjct: 102 EMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGM 161

Query: 34  -------------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
                         GI  DV VYSSL++GLC F RLKEA+E F +M  +GI+A++ TYN 
Sbjct: 162 TTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNS 221

Query: 81  LIH----------------------------------DNWEKQGRFS-AMALLQTLERDK 105
           LIH                                  D   K+G+   A  +L+ +    
Sbjct: 222 LIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKG 281

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E +I  Y+ +++GLC VG+ E+A K  + L+++G+   V +YNILING CK   I EA 
Sbjct: 282 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 341

Query: 166 KLLVQMKEKGCFPDSTSFNTVI 187
           +L  +M+ KG  P + ++NT+I
Sbjct: 342 RLFEEMRPKGLKPSTVTYNTLI 363



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 36/215 (16%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNR----------------------------- 55
           ++  D   +KG+  D   Y  LINGLC   +                             
Sbjct: 97  VQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSL 156

Query: 56  -----LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELN 109
                  EA+++F +M+  GI  ++V Y+ L+ D   + GR   A+   + +E      +
Sbjct: 157 CKDGMTTEALDMFSEMIGAGILPDVVVYSSLM-DGLCRFGRLKEALEFFKEMEGRGISAD 215

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I GL R G W+E    L+ + ++G  P   T+ ILI+GLCK+G + EA ++L 
Sbjct: 216 VYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILE 275

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            M  KG  PD  ++NT++ G  +  + + A+   +
Sbjct: 276 LMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ F  +   + I I+G+CK  ++  A +       KG   D+  Y++L+NGLC   +
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A +LF+ +  +GI   + +YN LI+   + Q    A  L + +     + +   Y+ 
Sbjct: 302 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LC+ GR   A+K   ++   G    + TY +L++GLCK G + EA  L   +K+  
Sbjct: 362 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 176 CFPDSTSFNTVIQGF 190
             P+   F+ ++ G 
Sbjct: 422 HKPNIEVFSILLDGM 436



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 88/160 (55%), Gaps = 3/160 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G   D    ++L+ G+   N + +AV+LFD+M  +G+  +  TY  LI  N   + R
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILI--NGLCKAR 126

Query: 92  FSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + +A+ L    +   + ++  Y ++ID LC+ G   EA     ++   G++P VV Y+ 
Sbjct: 127 KTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           L++GLC+ G + EA +   +M+ +G   D  ++N++I G 
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 226



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 42/175 (24%)

Query: 12  FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
              Y + ++G+CK   ++ AI       K     ++ V+S L++G+C   +L+EA + FD
Sbjct: 391 LSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 450

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           ++   G+  + + YN                                   ++I+GLC  G
Sbjct: 451 EISKNGLEPDTIAYN-----------------------------------ILINGLCNKG 475

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
              EA K L Q+ EKG +P  +T+N++I  L K+  I EA +LL +M+ +   PD
Sbjct: 476 MLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD 530



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 9   KGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  V+ I ++GMC+        ++ D   K G+  D   Y+ LINGLC    L EAV+
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 482

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M  +G   + +T+N +I +  ++     A+ LL+ +    +  +  V S+++    
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 542

Query: 122 RVGRWEEARKKLDQLSEKGL 141
              +W  A   L    +KG+
Sbjct: 543 FDPQWHAALVSLPNALQKGV 562



 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +E +    + ++ G+       +A +  D+++EKGL     TY ILINGLCK      A 
Sbjct: 73  FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI 132

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           KL  +MK   C  D  ++  +I        T  A
Sbjct: 133 KLHEKMK-GNCKGDVFTYGMIIDSLCKDGMTTEA 165


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD+  ++ F  +   Y   ING CKI +ID A+       +K    D   Y++L+ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA+G   +LVTY+ L+    + +    AMALL+ +E      +I+V
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQV 452

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG+CR G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL ++M 
Sbjct: 453 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              C PD  ++NT+ +GFL  NET RA   L++
Sbjct: 513 GNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 545



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 18/212 (8%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCT 52
           FD + ++ F+ N   YG  ING+CK+    +AI+      +G C  DV +Y+S+I+ LC 
Sbjct: 158 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 217

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             ++ EA  LF +MV QGI+ ++ TY  L+H       W+         LL  +   K  
Sbjct: 218 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH-----VTTLLNQMVNSKIL 272

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++ ++S V+D LC+ G+  EA + +D + ++G+ P VVTY  L++G C +  + EA K+
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              M  KG  PD  S+ T+I G+   ++ D+A
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 364



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 97/172 (56%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I++G+  DV  Y++L++G C  + + EAV++FD MV +G   ++++Y  LI+   +
Sbjct: 298 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCK 357

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 AM L + + R ++  + + Y+ ++ GLC VGR ++A     ++  +G +P +VT
Sbjct: 358 IHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVT 417

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y+IL++ LCK   + EA  LL  ++     PD   +N +I G     E + A
Sbjct: 418 YSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAA 469



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 99  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 158

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + ++ +Y+ +ID LC+ 
Sbjct: 159 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 218

Query: 123 -------------VGR---------------------WEEARKKLDQLSEKGLVPGVVTY 148
                        VG+                     W+     L+Q+    ++P VV +
Sbjct: 219 RQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIF 278

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +++ LCK+G + EA +++  M ++G  PD  ++ T++ G  +++E D A
Sbjct: 279 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA 329



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           Q    +   Y   ++ +C + E       ++  +   I  DV ++S++++ LC   ++ E
Sbjct: 234 QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTE 293

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A E+ D M+ +G+  ++VTY  L+  +  +     A+ +   + R  +  ++  Y+ +I+
Sbjct: 294 AHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLIN 353

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C++ + ++A    +++  K  +P   TYN L+ GLC  G + +A  L  +M  +G  P
Sbjct: 354 GYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMP 413

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D  +++ ++         + A + LK
Sbjct: 414 DLVTYSILLDSLCKNRHLEEAMALLK 439



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 21/152 (13%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  VY I I+GMC+  E+++A         KG+   V+ Y+ +I+GLC    L EA +LF
Sbjct: 449 DIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF 508

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYELNIEVYS---- 114
            +M     + +  TYN +     +      A+ LL+ +       D   L + V S    
Sbjct: 509 MEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLMLSVLSEDDR 568

Query: 115 ----LVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                + +G   +G WE  R KL +L++ G V
Sbjct: 569 RYFIFIPEGFDLLG-WEFMRCKLKELAKIGEV 599



 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+   G+ P V T NILIN  C    +  A  +L ++ + G  PD T+F T+I+G  V+ 
Sbjct: 90  QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 149

Query: 195 ETDRASSFLKK 205
           +   A     K
Sbjct: 150 KIGEALHLFDK 160


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CKI  +D A+       ++ +  +   Y++LI+GLC   RL++A+ LF
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AMALL+ +E    + +I++Y++VIDG+CR 
Sbjct: 413 REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRA 472

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+AR     LS KGL P V TYNI+ +GLCK+G++ EA KL ++M E  C  D  ++
Sbjct: 473 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 532

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+ QGFL  NET RA   L++
Sbjct: 533 NTITQGFLRNNETSRAIQLLEE 554



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ +  +Y   ING+CK     +AI+      KG C  DV VY +LI+ LC   +  +A 
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +M+ +GI+  +VT N L++             LL  +   K   N    + V+D L
Sbjct: 235 NLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDAL 294

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   +A   +D + + G+ P VVTY  LI+G C +  + EA K+   M  KGC P+ 
Sbjct: 295 CKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNV 354

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+NT+I G+      D+A
Sbjct: 355 FSYNTLINGYCKIERMDKA 373



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   + G+  DV  Y++LI+G C  + + EAV++FD MV +G    + +YN LI+   +
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCK 366

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    AM L + + R K   N   Y+ +I GLC VGR ++A     ++   G +P +VT
Sbjct: 367 IERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVT 426

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y IL++ LCK   + +A  LL  ++     PD   +  VI G     E + A
Sbjct: 427 YRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDA 478



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   + IN  C +  ++ A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 108 NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLF 167

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G   ++V Y  LI+   +     +A+ LL+++E+   + ++ VY  +I  LC+ 
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227

Query: 123 ----------------------------------VGRWEEARKKLDQLSEKGLVPGVVTY 148
                                             +G W+     L+++ +  ++P  ++ 
Sbjct: 228 RQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISL 287

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +++ LCK+GM+ +A  ++  M + G  PD  ++  +I G  +++E D A
Sbjct: 288 TTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA 338



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 3/180 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R++DS    GI  +V+  + LIN  C  NR+  A  +  K++  G   +  ++  LI   
Sbjct: 98  RKMDSF---GIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGL 154

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             +     A+ L   +  + ++ ++ +Y+ +I+GLC+ G    A + L  + +    P V
Sbjct: 155 CLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDV 214

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           V Y  LI+ LCK     +A  L  +M  KG  P+  + N+++       E    ++ L +
Sbjct: 215 VVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNE 274



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ ++  +    R    + L  KM + GI   + T N LI+          A ++L  + 
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKIL 136

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +   + +   ++ +I GLC  G+  EA    D++  +G  P VV Y  LINGLCK G   
Sbjct: 137 KLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTS 196

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            A +LL  M++  C PD   + T+I   
Sbjct: 197 AAIRLLRSMEKGNCQPDVVVYGTLIHSL 224



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+       +V +  ++  +  K  R+S +  L + + D + +   V
Sbjct: 52  FNTLDDALSSFNRMLHMHPPPSIVDFAKIL-TSITKVKRYSTVLSL-SRKMDSFGIPHNV 109

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  +I+  C + R   A   L ++ + G  P   ++  LI GLC +G I EA  L  +
Sbjct: 110 YTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDK 169

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +G  PD   + T+I G      T  A   L+ 
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRS 204



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 43/201 (21%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++ +CK   +D A+          +  D+ +Y+ +I+G+C    L++A +LF  +
Sbjct: 426 TYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNL 485

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+   + TYN + H                                   GLC+ G  
Sbjct: 486 SSKGLKPNVWTYNIMTH-----------------------------------GLCKRGLL 510

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K   ++ E        TYN +  G  +      A +LL +M  +G F    S  T+
Sbjct: 511 DEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARG-FSCDVSTTTL 569

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           + G L  +  D++ +   ++M
Sbjct: 570 LVGMLSDDGLDQSEAHKLEDM 590



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  +Y I I+GMC+  E++ A         KG+  +V+ Y+ + +GLC    L EA +LF
Sbjct: 458 DIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLF 517

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M     +A+  TYN +            A+ LL+ +    +  ++   +L++  L   
Sbjct: 518 MEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDD 577

Query: 124 GRWEEARKKLDQL 136
           G  +    KL+ +
Sbjct: 578 GLDQSEAHKLEDM 590


>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CKI  +D A+       ++ +  +   Y++LI+GLC   RL++A+ LF
Sbjct: 9   NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 68

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AMALL+ +E    + +I++Y++VIDG+CR 
Sbjct: 69  REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRA 128

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+AR     LS KGL P V TYNI+ +GLCK+G++ EA KL ++M E  C  D  ++
Sbjct: 129 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 188

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+ QGFL  NET RA   L++
Sbjct: 189 NTITQGFLRNNETSRAIQLLEE 210



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV +G    + +YN LI+   + +    AM L + + R K   N   Y+ +I GLC VGR
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A     ++   G +P +VTY IL++ LCK   + +A  LL  ++     PD   +  
Sbjct: 61  LQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTI 120

Query: 186 VIQGFLVKNETDRA 199
           VI G     E + A
Sbjct: 121 VIDGMCRAGELEDA 134



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 43/193 (22%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++ +CK   +D A+          +  D+ +Y+ +I+G+C    L++A +LF  +
Sbjct: 82  TYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNL 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+   + TYN + H                                   GLC+ G  
Sbjct: 142 SSKGLKPNVWTYNIMTH-----------------------------------GLCKRGLL 166

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K   ++ E        TYN +  G  +      A +LL +M  +G F    S  T+
Sbjct: 167 DEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARG-FSCDVSTTTL 225

Query: 187 IQGFLVKNETDRA 199
           + G L  +  D++
Sbjct: 226 LVGMLSDDGLDQS 238


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 121/193 (62%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ +D A+       ++G+  D   Y++LI+GLC   RL++A+ LF +MV
Sbjct: 337 YTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 396

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G   +LVTY  ++ D   K  R + AM LL+ +E    + +I +YS+V+DG+CR G  
Sbjct: 397 VYGQIPDLVTYR-ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGEL 455

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR    +LS KGL P V TY I+INGLC++G++ EA KL  +M E GC P++ ++N +
Sbjct: 456 EAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLI 515

Query: 187 IQGFLVKNETDRA 199
            +GFL  NET RA
Sbjct: 516 TRGFLRNNETLRA 528



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 18/212 (8%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD +T + F+ +   YG  ING+CK+    +AI+       +     V VYS++I+ LC 
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             +L EA+ LF  M+A+GI+    TY+ LIH      +W++  R     + + +  D+  
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N      ++D LC+ G   +A   +D + +  L P VVTYN L++G C +  + +   +
Sbjct: 267 FNT-----LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNV 321

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              M  KGC P   S+ T+I G+      D+A
Sbjct: 322 FDTMVRKGCVPSVISYTTLINGYCKIQIMDKA 353



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G       +++LI GLC   ++ EA++LF
Sbjct: 88  NTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLF 147

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM  +G   +++TY  LI+   +     +A+  L+++E+      + VYS +ID LC+ 
Sbjct: 148 DKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKD 207

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA      +  KG+ P   TY+ LI+GLC  G   EA +L   M  +   PD  +F
Sbjct: 208 RQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTF 267

Query: 184 NTVI-----QGFLVK 193
           NT++     +G +VK
Sbjct: 268 NTLVDALCKEGMVVK 282



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 43/224 (19%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF--- 63
           VY   I+ +CK R++  A+        KGI  + F YSSLI+GLC     KEA+ LF   
Sbjct: 196 VYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAM 255

Query: 64  --------------------------------DKMVAQGITAELVTYNPLIHDNWEKQGR 91
                                           D M+   +  ++VTYN L+  +  +   
Sbjct: 256 IHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEM 315

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + +  T+ R     ++  Y+ +I+G C++   ++A    +++S++GL+P  VTYN L
Sbjct: 316 GKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTL 375

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           I+GLC  G + +A  L  +M   G  PD  ++  ++  +L KN 
Sbjct: 376 IHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYR-ILFDYLCKNH 418



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I+  +  DV  Y+SL++G C  + + + V +FD MV +G    +++Y  LI+   +
Sbjct: 287 VDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCK 346

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    AM L + + +     +   Y+ +I GLC VGR  +A     ++   G +P +VT
Sbjct: 347 IQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVT 406

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y IL + LCK   + EA  LL  ++     PD   ++ V+ G     E + A     K
Sbjct: 407 YRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSK 464



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L+  +         + L+ +M + GI     T N LI+          A ++L  + 
Sbjct: 57  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL 116

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y+ +   ++ +I GLC  G+  EA +  D+++ +G  P V+TY  LINGLCK G   
Sbjct: 117 KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTS 176

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            A + L  M+++ C P    ++T+I       +   A S   
Sbjct: 177 TAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFS 218



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           N + +A+ LF++M+       +V ++ L+      +   + ++L + ++      N    
Sbjct: 33  NTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTL 92

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+  C + R   A   L  + + G  P   T+  LI GLC +G I EA +L  +M  
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  PD  ++ T+I G      T  A  FL+ 
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRS 184



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 36/161 (22%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+ +YS +++G+C    L+ A +LF K+ ++G+  +                        
Sbjct: 438 DIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD------------------------ 473

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                      +  Y+++I+GLC+ G   EA K   ++ E G  P   TYN++  G  + 
Sbjct: 474 -----------VRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRN 522

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              + A +L  +M  +G F    S  T++   L  +  D++
Sbjct: 523 NETLRAIQLFQEMLSRG-FSIDVSTTTLLVEMLSDDGLDQS 562


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ING CKI+ +D A+       ++ +  +   Y++LI+GLC   RL++A+ L
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +MVA+G   +LVTY  L     + +    AMALL+ +E   ++ +I++Y+ ++DG+CR
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+AR     LS KGL P V TYNI+I+GLCK+G++ EA KL  +M + GC P+  +
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N + +GFL  NE  R    L++
Sbjct: 528 YNLITRGFLRNNEALRTIELLEE 550



 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+    +AI+      +G C  +V V+S+LI+ LC   ++ EA 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F +M+ +GI+  +VTYN LIH   +         L+  +   K   ++   + V+D L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   EA   +D +  +G+ P VVTYN L++G C +  +  A K+   M  K C  + 
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+NT+I G+      D+A
Sbjct: 351 ISYNTLINGYCKIQSVDKA 369



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN +C +  +D A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 104 DVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLF 163

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + N+ V+S +ID LC+ 
Sbjct: 164 DKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKD 223

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILING----------------------------- 154
            +  EA     ++  KG+ P +VTYN LI+G                             
Sbjct: 224 RQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283

Query: 155 ------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 LCK+GM+ EA  ++  M  +G  P+  ++N ++ G  ++NE D A
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK+ E       ++  +   I  DVF  +++++ LC    + EA ++ 
Sbjct: 244 NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 303

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M+ +G+   +VTYN L+  +  +     A+ +  T+       N+  Y+ +I+G C++
Sbjct: 304 DMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKI 363

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              ++A    +++S + L P  VTYN LI+GLC  G + +A  L  +M  +G  PD  ++
Sbjct: 364 QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 423

Query: 184 NTVIQGFLVKN-ETDRASSFLK 204
            T +  +L KN   D+A + LK
Sbjct: 424 RT-LSDYLCKNRHLDKAMALLK 444



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I +G+  +V  Y++L++G C  N +  AV++FD MV +   A +++YN LI+   +
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    AM L + + R +   N   Y+ +I GLC VGR ++A     ++  +G +P +VT
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVT 422

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y  L + LCK   + +A  LL  ++     PD   + T++ G     E + A
Sbjct: 423 YRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 38/165 (23%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R++DS    GI  DV+  + +IN LC  NR+  A                          
Sbjct: 94  RQMDSF---GIPPDVYTLAIVINSLCHLNRVDFA-------------------------- 124

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                 FSA+A +  L    ++ +   ++ +I GLC  G+  EA    D++  +G  P V
Sbjct: 125 ------FSALAKILKL---GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNV 175

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VTY  LINGLCK G    A +LL  M++  C P+   F+T+I   
Sbjct: 176 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L EA+  F++M+ +      V +N L+    + +   + ++L  + + D + +  +V
Sbjct: 48  FNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL--SRQMDSFGIPPDV 105

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  VI+ LC + R + A   L ++ + G  P   T+  LI GLC +G I EA  L  +
Sbjct: 106 YTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDK 165

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +G  P+  ++ T+I G      T  A   L+ 
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 43/185 (23%)

Query: 22  MCKIREIDSAIK--KGI-----CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +CK R +D A+   K I       D+ +Y+++++G+C    L++A +LF  + ++G+   
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           + TYN +IH                                   GLC+ G   EA K   
Sbjct: 490 VWTYNIMIH-----------------------------------GLCKQGLLAEASKLFS 514

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++++ G  P   TYN++  G  +    +   +LL +M  +G F    S  T++ G L  +
Sbjct: 515 EMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDD 573

Query: 195 ETDRA 199
             D++
Sbjct: 574 GLDQS 578


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ING CKI+ +D A+       ++ +  +   Y++LI+GLC   RL++A+ L
Sbjct: 288 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 347

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +MVA+G   +LVTY  L     + +    AMALL+ +E   ++ +I++Y+ ++DG+CR
Sbjct: 348 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 407

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+AR     LS KGL P V TYNI+I+GLCK+G++ EA KL  +M + GC P+  +
Sbjct: 408 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 467

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N + +GFL  NE  R    L++
Sbjct: 468 YNLITRGFLRNNEALRTIELLEE 490



 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 7/179 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING C+I+ +D A+        +G+  D   Y++LI+GLC   RL+ A+ LF
Sbjct: 777 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 836

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AM LL+ +E    + +I VY++ IDG+CR 
Sbjct: 837 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 896

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL  +M E   + +STS
Sbjct: 897 GELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955



 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 8/184 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           F+ +   YG  +NG+CK+      I KGI  D+F Y+SLI+ LC     K    L ++MV
Sbjct: 647 FQPDVVTYGTLMNGLCKM------ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 700

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              I   +V ++ ++ D   K+G  + A  ++  + +   E ++  Y+ ++DG C     
Sbjct: 701 NSKIMPNVVVFSTVV-DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEM 759

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K  D +  KG VP V +YNILING C+   + +A  LL QM  +G   D+ ++NT+
Sbjct: 760 DEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTL 819

Query: 187 IQGF 190
           I G 
Sbjct: 820 IHGL 823



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN  C +R +  A       +K G   DV  Y +L+NGLC            
Sbjct: 615 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC------------ 662

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM+ +GI+ ++ TYN LIH             LL  +   K   N+ V+S V+D LC+ 
Sbjct: 663 -KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 721

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   +D + ++G+ P VVTY  L++G C +  + EA K+   M  KGC P+  S+
Sbjct: 722 GMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSY 781

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G+      D+A   L++
Sbjct: 782 NILINGYCQIQRMDKAMGLLEQ 803



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 44/240 (18%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC--------- 51
           F+ N   YG  ING+CK R++  A       I KGI  ++  Y+SLI+GLC         
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 52  ----------------TFNRL----------KEAVELFDKMVAQGITAELVTYNPLIHDN 85
                           T N +           EA ++ D M+ +G+   +VTYN L+  +
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 265

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             +     A+ +  T+       N+  Y+ +I+G C++   ++A    +++S + L P  
Sbjct: 266 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 325

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN-ETDRASSFLK 204
           VTYN LI+GLC  G + +A  L  +M  +G  PD  ++ T +  +L KN   D+A + LK
Sbjct: 326 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT-LSDYLCKNRHLDKAMALLK 384



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C   E+D A+K       KG   +V  Y+ LING C   R+ +A+ L ++M 
Sbjct: 746 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 805

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG+ A+ VTYN LIH          A+AL   +       ++  Y +++D LC+     
Sbjct: 806 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLA 865

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  +    L   ++ YNI I+G+C+ G +  A  L   +  KG  PD  ++N +I
Sbjct: 866 EAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMI 925

Query: 188 QGFLVKNETDRASSFLKK 205
            G   +   D A+   +K
Sbjct: 926 HGLCKRGLLDEANKLFRK 943



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   +   N  V+   ++ +CK   I       D  IK+G+  DV  Y++L++G C  +
Sbjct: 698 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS 757

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV +G    + +YN LI+   + Q    AM LL+ +       +   Y+
Sbjct: 758 EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYN 817

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VGR + A     ++   G +P +VTY IL++ LCK   + EA  LL  ++  
Sbjct: 818 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 877

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
               D   +N  I G     E + A
Sbjct: 878 NLDADILVYNIAIDGMCRAGELEAA 902



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I +G+  +V  Y++L++G C  N +  AV++FD MV +   A +++YN LI+   +
Sbjct: 243 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 302

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    AM L + + R +   N   Y+ +I GLC VGR ++A     ++  +G +P +VT
Sbjct: 303 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVT 362

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y  L + LCK   + +A  LL  ++     PD   + T++ G     E + A
Sbjct: 363 YRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 414



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 77/231 (33%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN +C +  +D A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 79  DVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLF 138

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +G    +VTY  L                                   I+GLC+ 
Sbjct: 139 DKMIGEGFQPNVVTYGTL-----------------------------------INGLCKD 163

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILING----------------------------- 154
            +  EA     ++  KG+ P +VTYN LI+G                             
Sbjct: 164 RQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 223

Query: 155 ------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 LCK+GM+ EA  ++  M  +G  P+  ++N ++ G  ++NE D A
Sbjct: 224 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 274



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 38/165 (23%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R++DS    GI  DV+  + +IN LC  NR+  A     K++  G   +  T+  LI   
Sbjct: 69  RQMDSF---GIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIR-- 123

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                                            GLC  G+  EA    D++  +G  P V
Sbjct: 124 ---------------------------------GLCVEGKIGEALHLFDKMIGEGFQPNV 150

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VTY  LINGLCK   + EA  +  +M  KG  P+  ++N++I G 
Sbjct: 151 VTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGL 195



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L EA+  F++M+ +      V +N L+    + +   + ++L  + + D + +  +V
Sbjct: 23  FNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL--SRQMDSFGIPPDV 80

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  VI+ LC + R + A   L ++ + G  P   T+  LI GLC +G I EA  L  +
Sbjct: 81  YTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDK 140

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  +G  P+  ++ T+I G 
Sbjct: 141 MIGEGFQPNVVTYGTLINGL 160



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +         + L  +M + GI  ++ T N LI+     +    A ++L  L 
Sbjct: 584 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 643

Query: 103 RDKYELNIEVYSLVIDGLCR----------------------VGRWEEARKKLDQLSEKG 140
           +  ++ ++  Y  +++GLC+                      +  W+     L+++    
Sbjct: 644 KLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 703

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++P VV ++ +++ LCK+GMI  A  ++  M ++G  PD  ++  ++ G  +++E D A
Sbjct: 704 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 762



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 43/185 (23%)

Query: 22  MCKIREIDSAIK--KGI-----CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +CK R +D A+   K I       D+ +Y+++++G+C    L++A +LF  + ++G+   
Sbjct: 370 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 429

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           + TYN +IH                                   GLC+ G   EA K   
Sbjct: 430 VWTYNIMIH-----------------------------------GLCKQGLLAEASKLFS 454

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++++ G  P   TYN++  G  +    +   +LL +M  +G F    S  T++ G L  +
Sbjct: 455 EMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDD 513

Query: 195 ETDRA 199
             D++
Sbjct: 514 GLDQS 518



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 17/140 (12%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+        V +  L+  +  K   +S +  L T + D + +  +V
Sbjct: 559 FNTLDDALSSFNRMLHMHPPPSTVDFTKLL-TSIAKMKHYSTVLSLST-QMDSFGIPPDV 616

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  +I+  C + R   A   L +L + G  P VVTY  L+NGLCK             
Sbjct: 617 YTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK------------- 663

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  KG  PD  ++N++I   
Sbjct: 664 MITKGISPDIFTYNSLIHAL 683


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ING CKI+ +D A+       ++ +  +   Y++LI+GLC   RL++A+ L
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +MVA+G   +LVTY  L     + +    AMALL+ +E   ++ +I++Y+ ++DG+CR
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+AR     LS KGL P V TYNI+I+GLCK+G++ EA KL  +M + GC P+  +
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N + +GFL  NE  R    L++
Sbjct: 528 YNLITRGFLRNNEALRTIELLEE 550



 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+    +AI+      +G C  +V V+S+LI+ LC   ++ EA 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F +M+ +GI+  +VTYN LIH   +         L+  +   K   ++   + V+D L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   EA   +D +  +G+ P VVTYN L++G C +  +  A K+   M  K C  + 
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+NT+I G+      D+A
Sbjct: 351 ISYNTLINGYCKIQSVDKA 369



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN +C +  +D A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 104 DVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLF 163

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + N+ V+S +ID LC+ 
Sbjct: 164 DKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKD 223

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILING----------------------------- 154
            +  EA     ++  KG+ P +VTYN LI+G                             
Sbjct: 224 RQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283

Query: 155 ------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 LCK+GM+ EA  ++  M  +G  P+  ++N ++ G  ++NE D A
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK+ E       ++  +   I  DVF  +++++ LC    + EA ++ 
Sbjct: 244 NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 303

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M+ +G+   +VTYN L+  +  +     A+ +  T+       N+  Y+ +I+G C++
Sbjct: 304 DMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKI 363

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              ++A    +++S + L P  VTYN LI+GLC  G + +A  L  +M  +G  PD  ++
Sbjct: 364 QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 423

Query: 184 NTVIQGFLVKN-ETDRASSFLK 204
            T +  +L KN   D+A + LK
Sbjct: 424 RT-LSDYLCKNRHLDKAMALLK 444



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I +G+  +V  Y++L++G C  N +  AV++FD MV +   A +++YN LI+   +
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    AM L + + R +   N   Y+ +I GLC VGR ++A     ++  +G +P +VT
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVT 422

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y  L + LCK   + +A  LL  ++     PD   + T++ G     E + A
Sbjct: 423 YRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 38/165 (23%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R++DS    GI  DV+  + +IN LC  NR+  A                          
Sbjct: 94  RQMDSF---GIPPDVYTLAIVINSLCHLNRVDFA-------------------------- 124

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                 FSA+A +  L    ++ +   ++ +I GLC  G+  EA    D++  +G  P V
Sbjct: 125 ------FSALAKILKL---GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNV 175

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VTY  LINGLCK G    A +LL  M++  C P+   F+T+I   
Sbjct: 176 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L EA+  F++M+ +      V +N L+    + +   + ++L  + + D + +  +V
Sbjct: 48  FNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSL--SRQMDSFGIPPDV 105

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  VI+ LC + R + A   L ++ + G  P   T+  LI GLC +G I EA  L  +
Sbjct: 106 YTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDK 165

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +G  P+  ++ T+I G      T  A   L+ 
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 43/185 (23%)

Query: 22  MCKIREIDSAIK--KGI-----CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +CK R +D A+   K I       D+ +Y+++++G+C    L++A +LF  + ++G+   
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           + TYN +IH                                   GLC+ G   EA K   
Sbjct: 490 VWTYNIMIH-----------------------------------GLCKQGLLAEASKLFS 514

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++++ G  P   TYN++  G  +    +   +LL +M  +G F    S  T++ G L  +
Sbjct: 515 EMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDD 573

Query: 195 ETDRA 199
             D++
Sbjct: 574 GLDQS 578


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ ID A+       ++ +  +   YS+LI+GLC   RL++A+ LF++MV
Sbjct: 304 YNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMV 363

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           A G    LVTY+ L+ D   K  R + AMALL+ +E    + +++VY++ IDG+CR G  
Sbjct: 364 ACGQIPNLVTYSILL-DYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDL 422

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR     L+ +GL P V T+NI+I GLCK+G++ EA KL  +M E GC  +  ++NT+
Sbjct: 423 EAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTI 482

Query: 187 IQGFLVKNETDRASSFLKK 205
            QG L  N+T RA   L++
Sbjct: 483 TQGLLQNNKTSRAIQLLEE 501



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           + G+C + +I       D  + +G   +V  Y +L+NGLC   +L EA+ LF +M+A+GI
Sbjct: 133 VRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGI 192

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + ++ TYN LIH             LL  + + K   N+   ++V+D LC+ G+  EA  
Sbjct: 193 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHD 252

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +D + + G+ P VVTY  L++G C +  + EA K+   M   GC  +  S+NT+I G+ 
Sbjct: 253 VVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYC 312

Query: 192 VKNETDRA 199
                D+A
Sbjct: 313 KIQRIDKA 320



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ + +   N     I ++ +CK   + E    +D  I+ G+  DV  Y++L++G C  +
Sbjct: 221 EMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRS 280

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV  G    +V+YN LI+   + Q    AM L + + R +   N   YS
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYS 340

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VGR ++A    +++   G +P +VTY+IL++ LCK   + EA  LL  ++  
Sbjct: 341 TLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGS 400

Query: 175 GCFPDSTSFNTVIQGF 190
              PD   +N  I G 
Sbjct: 401 NLDPDVQVYNIAIDGM 416



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  +NG+CK R++  A       I KGI  D+F Y+SLI+ LC     K   
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVT 216

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L ++MV   I   +V+ N ++ D   K+G+ + A  ++  + +   E ++  Y+ ++DG
Sbjct: 217 TLLNEMVKSKIMPNVVSLN-IVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C     +EA K  D +   G V  VV+YN LING CK   I +A  L  +M  +   P+
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPN 335

Query: 180 STSFNTVIQGF 190
           + +++T+I G 
Sbjct: 336 TMTYSTLIHGL 346



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 7/190 (3%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C +  +D A+       K G   D   +++L+ GLC   ++ EA+++FDKMV +
Sbjct: 96  IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L++   + +    A+ L   +       +I  Y+ +I  LC +  W+  
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHV 215

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L+++ +  ++P VV+ NI+++ LCK+G + EA  ++  M + G  PD  ++  ++ G
Sbjct: 216 TTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275

Query: 190 FLVKNETDRA 199
             +++E D A
Sbjct: 276 HCLRSEMDEA 285



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 42/179 (23%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK   +  A+          +  DV VY+  I+G+C    L+ A +LF
Sbjct: 370 NLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLF 429

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +  +G+  ++ T+N                                   ++I GLC+ 
Sbjct: 430 SNLAPRGLQPDVWTHN-----------------------------------IMIRGLCKR 454

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           G  +EA K   ++ E G +    TYN +  GL +      A +LL +M  +G   D ++
Sbjct: 455 GLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVST 513



 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           KK+D     G+ P V T  I+IN  C    +  A  +L ++ + G  PD+ +F T+++G 
Sbjct: 80  KKMDSF---GIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGL 136

Query: 191 LV 192
            V
Sbjct: 137 CV 138


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ ID A+       ++ +  D   YS+LI+GLC   RL++A+ LF +MV
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 403

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A      LVTY  L+    + +    AMALL+ +E    + +I+V ++ IDG+CR G  E
Sbjct: 404 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 463

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            AR     LS KGL P V TY+I+INGLC++G++ EA KL  +M E GC  +   +NT+ 
Sbjct: 464 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 523

Query: 188 QGFLVKNETDRASSFLKK 205
           +GFL  NET RA   L++
Sbjct: 524 RGFLRNNETSRAIQLLQE 541



 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 17/204 (8%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   YG  ING+CK       IR + S ++K    +VF Y+++I+ LC   ++ EA 
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            LF +MV +GI+ ++ TYN LIH       W+         LL  +   K   ++  ++ 
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKH-----VATLLNEMVDSKIMPDVVSFNT 276

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+D LC+ G+  EA   +D++ ++G+ P VVTY  L++G C    + EA K+   M  KG
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C P+  S+NT+I G+      D+A
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKA 360



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G   D   +++LI G+    ++ EA+ LF
Sbjct: 95  NIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLF 154

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +G   ++VTY  LI+   +     +A+ LL ++ +   + N+  Y+ +ID LC+ 
Sbjct: 155 DKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKD 214

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA     ++  KG+ P + TYN LI+ LC          LL +M +    PD  SF
Sbjct: 215 RQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NTV+     + +   A   + K
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDK 296



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 89/172 (51%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I++G+  +V  Y++L++G C  + + EAV++FD MV +G    +++YN LI+   +
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    AM L   + R +   +   YS +I GLC V R ++A     ++     +P +VT
Sbjct: 354 IQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVT 413

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y IL++ LCK   + EA  LL  ++     PD    N  I G     E + A
Sbjct: 414 YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 465



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +++    LIN  C  NR+  A  +  K++  G   +  T+  LI   + +     A
Sbjct: 91  GIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEA 150

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +  + +  ++  Y  +I+GLC+VG    A + L  + +K   P V  YN +I+ 
Sbjct: 151 LHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDS 210

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK   + EA  L  +M  KG  PD  ++N++I   
Sbjct: 211 LCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHAL 246



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 42/185 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK R +  A+          +  D+ V +  I+G+C    L+ A +LF
Sbjct: 410 NLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLF 469

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++G+            D W                          YS++I+GLCR 
Sbjct: 470 SNLSSKGLQP----------DVW-------------------------TYSIMINGLCRR 494

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K   ++ E G       YN +  G  +      A +LL +M  +G   D+++ 
Sbjct: 495 GLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 554

Query: 184 NTVIQ 188
              ++
Sbjct: 555 TLFVK 559



 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+   G+ P + T +ILIN  C    +  A  +L ++ + G  PD+ +F T+I+G  V+ 
Sbjct: 86  QMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEG 145

Query: 195 ETDRASSFLKK 205
           +   A     K
Sbjct: 146 KIGEALHLFDK 156



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L+ +  + +   Y I ING+C+   +D A K        G  L+  +Y+++  G    N
Sbjct: 471 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 530

Query: 55  RLKEAVELFDKMVAQGITAELVT 77
               A++L  +MVA+G +A+  T
Sbjct: 531 ETSRAIQLLQEMVARGFSADAST 553


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ ID A+       ++ +  ++  Y++LI+GLC   RL++A+ LF +MV
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMV 416

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A G   +LVTY  L+    + +    AMA+L+ +E      +I+ Y++VIDG+CRVG  E
Sbjct: 417 ASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELE 476

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A      LS KGL P V TY I+INGLC +G++ EA KL  +M   GC PD  ++N + 
Sbjct: 477 AAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLIT 536

Query: 188 QGFLVKNETDRASSFLKK 205
           +GFL  NET  A   L++
Sbjct: 537 RGFLRNNETLSAIQLLQE 554



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 108/199 (54%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  I+G+CK       IR + S ++K    +V  Y+++I+ L    ++ EA+
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F +M+A+GI+  + TYN +IH   +         L+  +   K   N+ +++ ++D L
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G    A   +D + ++G+ P VVTY  L++G C +  + EADK+   M  KGC P+ 
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S++T+I G+      D+A
Sbjct: 355 ISYSTLINGYCKIQRIDKA 373



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ + +   N  ++   ++ +CK          +D  I++G+  DV  Y++L++G C  +
Sbjct: 274 EMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRS 333

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA ++FD MV +G    +++Y+ LI+   + Q    AM L + + + +   NI  Y+
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYN 393

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VGR  +A     ++   G +P +VTY IL++ LCK   + +A  +L  ++  
Sbjct: 394 TLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  S+N VI G     E + A      
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSS 484



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK  E       ++  +   I  +V ++++L++ LC    +  A ++ 
Sbjct: 248 NVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVV 307

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M+ +G+  ++VTY  L+  +  +     A  +  T+ R     N+  YS +I+G C++
Sbjct: 308 DVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKI 367

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R ++A    +++ ++ LVP +VTYN LI+GLC  G + +A  L  +M   G  PD  ++
Sbjct: 368 QRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTY 427

Query: 184 NTVIQGFLVKNETDRASSFLK 204
             ++         D+A + LK
Sbjct: 428 RILLDYLCKTRHLDQAMAMLK 448



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 42/234 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
              + +   I IN  C +  +D          K G   D   +++LI GLC   ++ EA+
Sbjct: 105 IPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEAL 164

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LFDKMV +G     VTY  LIH   +     +A+ LL+++ +   E N+  Y+ +ID L
Sbjct: 165 HLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCL 224

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-------------------------- 154
            +  +  EA     ++  KG+ P V TYN +I+G                          
Sbjct: 225 FKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNV 284

Query: 155 ---------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                    LCK+GM+  A  ++  M ++G  PD  ++  ++ G  +++E D A
Sbjct: 285 VIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEA 338



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+GMC++ E+++A         KG+  DV+ Y+ +INGLC    L EA +LF +M 
Sbjct: 462 YNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMN 521

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + +  TYN +           SA+ LLQ +    +  +    +L+++ L   G  +
Sbjct: 522 TDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQ 581

Query: 128 EARKKLDQLSE 138
             ++ L +  +
Sbjct: 582 SVKQILHEFVQ 592


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ ID A+       ++ +  D   YS+LI+GLC   RL++A+ LF +MV
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 457

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A      LVTY  L+    + +    AMALL+ +E    + +I+V ++ IDG+CR G  E
Sbjct: 458 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 517

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            AR     LS KGL P V TY+I+INGLC++G++ EA KL  +M E GC  +   +NT+ 
Sbjct: 518 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 577

Query: 188 QGFLVKNETDRASSFLKK 205
           +GFL  NET RA   L++
Sbjct: 578 RGFLRNNETSRAIQLLQE 595



 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   YG  ING+CK       IR + S ++K    +VF Y+++I+ LC   ++ EA 
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +MV +GI+ ++ TYN LIH             LL  +   K   ++  ++ V+D L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  EA   +D++ ++G+ P VVTY  L++G C    + EA K+   M  KGC P+ 
Sbjct: 282 CKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNV 341

Query: 181 TSFNTVIQGFLVKNETDRASSF 202
            S+NT+I G+      D+A  +
Sbjct: 342 ISYNTLINGYCKIQRIDKAIHY 363



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G   D   +++LI G+C   ++ EA+ LF
Sbjct: 95  NIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLF 154

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +G   ++VTY  LI+   +     +A+ LL ++ +   + N+  Y+ +ID LC+ 
Sbjct: 155 DKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKD 214

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA     ++  KG+ P + TYN LI+ LC          LL +M +    PD  SF
Sbjct: 215 RQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NTV+     + +   A   + K
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDK 296



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN +  A+  F++M+        V +N L+    + +   + ++L   ++      NI  
Sbjct: 39  FNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYT 98

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
             ++I+  C + R   A   L ++ + G  P   T+  LI G+C +G I EA  L  +M 
Sbjct: 99  LHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMI 158

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKN 206
            +G  PD  ++ T+I G      T  A     S ++KN
Sbjct: 159 GEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN 196



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 42/185 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK R +  A+          +  D+ V +  I+G+C    L+ A +LF
Sbjct: 464 NLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLF 523

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++G+            D W                          YS++I+GLCR 
Sbjct: 524 SNLSSKGLQP----------DVW-------------------------TYSIMINGLCRR 548

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K   ++ E G       YN +  G  +      A +LL +M  +G   D+++ 
Sbjct: 549 GLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 608

Query: 184 NTVIQ 188
              ++
Sbjct: 609 TLFVK 613



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L+ +  + +   Y I ING+C+   +D A K        G  L+  +Y+++  G    N
Sbjct: 525 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 584

Query: 55  RLKEAVELFDKMVAQGITAELVT 77
               A++L  +MVA+G +A+  T
Sbjct: 585 ETSRAIQLLQEMVARGFSADAST 607


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ ID A+       ++ +  D   YS+LI+GLC   RL++A+ LF +MV
Sbjct: 277 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 336

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A      LVTY  L+    + +    AMALL+ +E    + +I+V ++ IDG+CR G  E
Sbjct: 337 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 396

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            AR     LS KGL P V TY+I+INGLC++G++ EA KL  +M E GC  +   +NT+ 
Sbjct: 397 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 456

Query: 188 QGFLVKNETDRASSFLKK 205
           +GFL  NET RA   L++
Sbjct: 457 RGFLRNNETSRAIQLLQE 474



 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 8/191 (4%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   YG  ING+CK       IR + S ++K    +VF Y+++I+ LC   ++ EA 
Sbjct: 129 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 188

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +MV +GI+ ++ TYN LIH             LL  +   K   ++  ++ V+D L
Sbjct: 189 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 248

Query: 121 CRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C+ G+  EA   +D++ ++ G +P V++YN LING CK   I +A  L  +M  +   PD
Sbjct: 249 CKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPD 308

Query: 180 STSFNTVIQGF 190
           + +++T+I G 
Sbjct: 309 TVTYSTLIHGL 319



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 10/199 (5%)

Query: 11  NFHVYGIRINGMCKIRE---------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           N +   I IN  C +            D  I +G   DV  Y +LINGLC       A+ 
Sbjct: 95  NIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 154

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L   MV +     +  YN +I    + +    A  L   +       +I  Y+ +I  LC
Sbjct: 155 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALC 214

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDS 180
            +  W+     L+++ +  ++P VV++N +++ LCK+G + EA  ++ +M ++ GC P+ 
Sbjct: 215 NLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNV 274

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+NT+I G+      D+A
Sbjct: 275 ISYNTLINGYCKIQRIDKA 293



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLK--EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           GI  +++    LIN  C  NR K  EA+ LFDKM+ +G   ++VTY  LI+   +     
Sbjct: 91  GIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 150

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ LL ++ +   + N+  Y+ +ID LC+  +  EA     ++  KG+ P + TYN LI
Sbjct: 151 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 210

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + LC          LL +M +    PD  SFNTV+     + +   A   + K
Sbjct: 211 HALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDK 263



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 42/185 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK R +  A+          +  D+ V +  I+G+C    L+ A +LF
Sbjct: 343 NLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLF 402

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++G+  ++ T                                   YS++I+GLCR 
Sbjct: 403 SNLSSKGLQPDVWT-----------------------------------YSIMINGLCRR 427

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K   ++ E G       YN +  G  +      A +LL +M  +G   D+++ 
Sbjct: 428 GLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 487

Query: 184 NTVIQ 188
              ++
Sbjct: 488 TLFVK 492



 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L+ +  + +   Y I ING+C+   +D A K        G  L+  +Y+++  G    N
Sbjct: 404 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 463

Query: 55  RLKEAVELFDKMVAQGITAELVT 77
               A++L  +MVA+G +A+  T
Sbjct: 464 ETSRAIQLLQEMVARGFSADAST 486


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 9/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +    +  N   Y   ING CKI+ +D A        +K +  +   Y++L++  C 
Sbjct: 337 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCH 395

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA G   +L TY  L+    +K     AMALL+T+E    + +I++
Sbjct: 396 VGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQI 455

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++VIDG+CR G  E AR     LS KGL P V TY I+INGLC++G++ EA+KL ++M 
Sbjct: 456 YTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 515

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC PD  ++NT+ QG L   E  RA   L++
Sbjct: 516 GNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE 548



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 17/210 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+   ++AI+      +G C  DV VY+S+I+ LC   ++ EA 
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 229

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            LF KMV QGI+ ++ TY  LIH       W+         LL  +   K   ++ ++S 
Sbjct: 230 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKH-----VTTLLNQMINSKIMPDVVIFST 284

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+D LC+ G+  EA   +D +  +G+ P VVTYN L++G C +  + EA K+   M   G
Sbjct: 285 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P+  S+NT+I G+      D+A+   ++
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEE 374



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           Q    +   Y   I+ +C + E       ++  I   I  DV ++S++++ LC   ++ E
Sbjct: 238 QGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITE 297

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++ D M+ +G+   +VTYN L+  +  +     A+ +  T+  + Y  N+  Y+ +I+
Sbjct: 298 AHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLIN 357

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C++ R ++A    +++ +K L+P  VTYN L++  C  G + +A  L  +M   G  P
Sbjct: 358 GYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIP 416

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D  ++  ++     K+  D A + LK
Sbjct: 417 DLATYRILLDYLCKKSHLDEAMALLK 442



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 46/245 (18%)

Query: 1   FDLTEQR----FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           F L+ Q        + +   I IN  C +  +  A       +K G   D   +++LI G
Sbjct: 89  FSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRG 148

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   ++ +A+ LFDKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + +
Sbjct: 149 LCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPD 208

Query: 110 IEVYSLVIDGLCR--------------VGR---------------------WEEARKKLD 134
           + VY+ +ID LC+              VG+                     W+     L+
Sbjct: 209 VVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLN 268

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+    ++P VV ++ +++ LCK+G I EA  ++  M  +G  P+  ++N ++ G  +++
Sbjct: 269 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 328

Query: 195 ETDRA 199
           E D A
Sbjct: 329 EMDEA 333



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +    +      L ++M + GI  ++ T N LI+          A ++L  + 
Sbjct: 72  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKIL 131

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  ++ +   ++ +I GLC  G+  +A    D++  +G  P VVTY  LINGLCK G   
Sbjct: 132 KLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTN 191

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A +LL  M++  C PD   + ++I       +   A +   K
Sbjct: 192 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 234



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  +Y I I+GMC+  E+++A         KG+  +V  Y+ +INGLC    L EA +LF
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF 511

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            +M   G + +  TYN +     + +    A+ LLQ +    +  ++   +L+++ LC
Sbjct: 512 MEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569



 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L+ +  + N   Y I ING+C+   +D A K        G   D   Y+++  GL    
Sbjct: 478 NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNK 537

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI 82
               A++L  +M+A+G +A++ T   L+
Sbjct: 538 EALRAIQLLQEMLARGFSADVSTTTLLV 565


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   ING CKI+ I+ A+       +K +  +   YS+L++GLC   RL++A+
Sbjct: 335 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 394

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            LF +MV +G   + V+Y  L+ D   K  R   A+ALL+ +E    + +I++Y++VIDG
Sbjct: 395 ALFHEMVTRGQIPDFVSYCILL-DYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 453

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +CR G  E AR     LS KGL P V TY I+INGLC++G++ EA KL  +MK KG  P+
Sbjct: 454 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 513

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N + +GFL  NET R    L++
Sbjct: 514 GCTYNLITRGFLRNNETLRGIQLLQE 539



 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 17/195 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+    +AI+      +G C  DV VY+S+I+ LC   ++ +A 
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            LF +M+ QGI+  + TYN LIH       W+        ALL  +   K   N+ ++S 
Sbjct: 220 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKH-----VTALLNEMVNSKIMPNVVIFST 274

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+D LC+ G+  EA   +D + ++G+ P VVTYN L++G C +  + EA K+   M  KG
Sbjct: 275 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334

Query: 176 CFPDSTSFNTVIQGF 190
             PD  S++T+I G+
Sbjct: 335 FAPDVVSYSTLINGY 349



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   +   N  ++   ++ +CK   + E    +D  IK+G+  +V  Y++L++G C  +
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 318

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV +G   ++V+Y+ LI+   + Q    AM L + + R +   N   YS
Sbjct: 319 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 378

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GLC VGR ++A     ++  +G +P  V+Y IL++ LCK   + EA  LL  ++  
Sbjct: 379 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS 438

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              PD   +  VI G     E + A
Sbjct: 439 NMDPDIQIYTIVIDGMCRAGELEAA 463



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  Q    +   Y   I+ +C + E       ++  +   I  +V ++S++++ LC   
Sbjct: 224 EMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA ++ D M+ +G+   +VTYN L+  +  +     A+ +  T+    +  ++  YS
Sbjct: 284 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C++ R E+A    +++  K L+P  VTY+ L++GLC  G + +A  L  +M  +
Sbjct: 344 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 403

Query: 175 GCFPDSTSFNTVIQGFLVKN-ETDRASSFLK 204
           G  PD  S+  ++  +L KN   D A + LK
Sbjct: 404 GQIPDFVSY-CILLDYLCKNRRLDEAIALLK 433



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 111/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C ++ +  A       +K G   ++  +++LI GLC   ++ E + LF
Sbjct: 93  NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 152

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + ++ VY+ +ID LC+ 
Sbjct: 153 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKD 212

Query: 123 ----------------------------------VGRWEEARKKLDQLSEKGLVPGVVTY 148
                                             +  W+     L+++    ++P VV +
Sbjct: 213 RQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIF 272

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +++ LCK+G +MEA  ++  M ++G  P+  ++N ++ G  +++E D A
Sbjct: 273 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA 323



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +         + L  +M + GI   + T N LI+     Q    A ++L  + 
Sbjct: 62  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 121

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  ++ NI  ++ +I GLC  G+  E     D++  +G  P VVTY  LINGLCK G   
Sbjct: 122 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTS 181

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            A +LL  M++  C PD   + ++I       +  +A
Sbjct: 182 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 218



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 43/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F  Y I ++ +CK R +D AI          +  D+ +Y+ +I+G+C    L+ A +LF
Sbjct: 408 DFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 467

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++G+                                     N+  Y+++I+GLC+ 
Sbjct: 468 SNLSSKGLHP-----------------------------------NVWTYTIMINGLCQQ 492

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA K   ++  KG  P   TYN++  G  +    +   +LL +M  +G F    S 
Sbjct: 493 GLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG-FSADVST 551

Query: 184 NTVIQGFLVKNETDRA 199
           +TV+   L  +  D++
Sbjct: 552 STVLVEMLSDDGLDQS 567



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+       +  +  L+    + +   + ++L   ++      NI  
Sbjct: 37  FNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYT 96

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +++I+  C + R   A   L ++ + G  P + T+N LI GLC +G I E   L  +M 
Sbjct: 97  LNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMI 156

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +G  P+  ++ T+I G      T  A   L+ 
Sbjct: 157 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 189



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  +Y I I+GMC+  E+++A         KG+  +V+ Y+ +INGLC    L EA +LF
Sbjct: 443 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 502

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G +    TYN +             + LLQ +    +  ++   +++++ L   
Sbjct: 503 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDD 562

Query: 124 GRWEEARKKLDQL 136
           G  +  ++ L + 
Sbjct: 563 GLDQSVKQILSEF 575


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   ING CKI+ I+ A+       +K +  +   YS+L++GLC   RL++A+
Sbjct: 344 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 403

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            LF +MV +G   + V+Y  L+ D   K  R   A+ALL+ +E    + +I++Y++VIDG
Sbjct: 404 ALFHEMVTRGQIPDFVSYCILL-DYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 462

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +CR G  E AR     LS KGL P V TY I+INGLC++G++ EA KL  +MK KG  P+
Sbjct: 463 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 522

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N + +GFL  NET R    L++
Sbjct: 523 GCTYNLITRGFLRNNETLRGIQLLQE 548



 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 17/195 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YG  ING+CK+    +AI+      +G C  DV VY+S+I+ LC   ++ +A 
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            LF +M+ QGI+  + TYN LIH       W+        ALL  +   K   N+ ++S 
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKH-----VTALLNEMVNSKIMPNVVIFST 283

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+D LC+ G+  EA   +D + ++G+ P VVTYN L++G C +  + EA K+   M  KG
Sbjct: 284 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 343

Query: 176 CFPDSTSFNTVIQGF 190
             PD  S++T+I G+
Sbjct: 344 FAPDVVSYSTLINGY 358



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   +   N  ++   ++ +CK   + E    +D  IK+G+  +V  Y++L++G C  +
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 327

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV +G   ++V+Y+ LI+   + Q    AM L + + R +   N   YS
Sbjct: 328 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 387

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GLC VGR ++A     ++  +G +P  V+Y IL++ LCK   + EA  LL  ++  
Sbjct: 388 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS 447

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              PD   +  VI G     E + A
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAA 472



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  Q    +   Y   I+ +C + E       ++  +   I  +V ++S++++ LC   
Sbjct: 233 EMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 292

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA ++ D M+ +G+   +VTYN L+  +  +     A+ +  T+    +  ++  YS
Sbjct: 293 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 352

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C++ R E+A    +++  K L+P  VTY+ L++GLC  G + +A  L  +M  +
Sbjct: 353 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 412

Query: 175 GCFPDSTSFNTVIQGFLVKN-ETDRASSFLK 204
           G  PD  S+  ++  +L KN   D A + LK
Sbjct: 413 GQIPDFVSY-CILLDYLCKNRRLDEAIALLK 442



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 111/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C ++ +  A       +K G   ++  +++LI GLC   ++ E + LF
Sbjct: 102 NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 161

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + ++ VY+ +ID LC+ 
Sbjct: 162 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKD 221

Query: 123 ----------------------------------VGRWEEARKKLDQLSEKGLVPGVVTY 148
                                             +  W+     L+++    ++P VV +
Sbjct: 222 RQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIF 281

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +++ LCK+G +MEA  ++  M ++G  P+  ++N ++ G  +++E D A
Sbjct: 282 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA 332



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +         + L  +M + GI   + T N LI+     Q    A ++L  + 
Sbjct: 71  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 130

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  ++ NI  ++ +I GLC  G+  E     D++  +G  P VVTY  LINGLCK G   
Sbjct: 131 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTS 190

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            A +LL  M++  C PD   + ++I       +  +A
Sbjct: 191 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 227



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 43/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F  Y I ++ +CK R +D AI          +  D+ +Y+ +I+G+C    L+ A +LF
Sbjct: 417 DFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 476

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++G+       +P                            N+  Y+++I+GLC+ 
Sbjct: 477 SNLSSKGL-------HP----------------------------NVWTYTIMINGLCQQ 501

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA K   ++  KG  P   TYN++  G  +    +   +LL +M  +G F    S 
Sbjct: 502 GLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG-FSADVST 560

Query: 184 NTVIQGFLVKNETDRA 199
           +TV+   L  +  D++
Sbjct: 561 STVLVEMLSDDGLDQS 576



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+       +  +  L+    + +   + ++L   ++      NI  
Sbjct: 46  FNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYT 105

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +++I+  C + R   A   L ++ + G  P + T+N LI GLC +G I E   L  +M 
Sbjct: 106 LNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMI 165

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +G  P+  ++ T+I G      T  A   L+ 
Sbjct: 166 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 198



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  +Y I I+GMC+  E+++A         KG+  +V+ Y+ +INGLC    L EA +LF
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 511

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G +    TYN +             + LLQ +    +  ++   +++++ L   
Sbjct: 512 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDD 571

Query: 124 GRWEEARKKLDQL 136
           G  +  ++ L + 
Sbjct: 572 GLDQSVKQILSEF 584


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +NG+C   ++D A++       +GI +DV  Y++LING CT  + +EA+ LF
Sbjct: 218 NIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLF 277

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF------------------------------- 92
            KM  + +T  + TY  L+   ++  GR                                
Sbjct: 278 RKMQYEELTPSITTYTILLKALYQ-NGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCK 336

Query: 93  -----SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + ++L+  KY+ +I +YS++I G+ +  RWE A +  D++   GLVP +VT
Sbjct: 337 NGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVT 396

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YNI+INGLCK+G ++EA++L VQM+E GC  D  SFN +I+GFL +N+  +A  FLK+
Sbjct: 397 YNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKR 454



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 19/209 (9%)

Query: 10  GNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           GNF  YG+ I+ +CK       ++     I  GIC +V VYSSLINGLC   +L+EAV L
Sbjct: 77  GNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNL 136

Query: 63  FDKMVAQGITAELVTYNPLIHDN-----WEKQGR-FSAMALLQTLERDKYELNIEVYSLV 116
           FD+MV+QGI A ++TYN LIH +     W++  R FS M     L       ++  ++ +
Sbjct: 137 FDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP------DVVTFTTL 190

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ID L + G+ +EA K  + + ++G  P +VTYN L+NGLC    +  A +L   M E+G 
Sbjct: 191 IDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGI 250

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             D  S+NT+I G+    +T+ A +  +K
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRK 279



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 9/200 (4%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N       + GMC        +   D   + G   D+ +Y  LIN L    + + AV
Sbjct: 5   YQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAV 64

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVIDG 119
           EL  +M+++  +    TY  L+ D+  K G     + + + +       N+ VYS +I+G
Sbjct: 65  ELHRRMLSEICSGNFFTYG-LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLING 123

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCRVG+  EA    D++  +G+   V+TYN LI+  C+ G+  EA +   QM  +G  PD
Sbjct: 124 LCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPD 183

Query: 180 STSFNTVIQGFLVKNETDRA 199
             +F T+I     K +   A
Sbjct: 184 VVTFTTLIDHLSKKGKVQEA 203



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 87/160 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK+G   ++  Y+SL+NGLC  +++  AV LF+ MV +GI  ++++YN LI+        
Sbjct: 211 IKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKT 270

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L + ++ ++   +I  Y++++  L + GR   A++  + +   G  P + TY +L
Sbjct: 271 EEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVL 330

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           ++GLCK G I EA  +   +K     P    ++ +I G  
Sbjct: 331 LDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMF 370



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 74/140 (52%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ L++GLC    ++EA+++F  + +      +  Y+ LI   ++ +   SAM +   +
Sbjct: 326 TYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEI 385

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  NI  Y+++I+GLC+ G+  EA +   Q+ E G     +++N +I G  ++  +
Sbjct: 386 PTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQV 445

Query: 162 MEADKLLVQMKEKGCFPDST 181
            +A + L +M+EK   P+ +
Sbjct: 446 QKAMEFLKRMREKNFSPNDS 465


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 119/208 (57%), Gaps = 7/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           ++R   + H Y I I  +CKI+ +D A+        KGI  D   YSSLI+GLC   R+ 
Sbjct: 303 KRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERIS 362

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A EL D+M A+G  A+++TY   +H   +      A+AL++ ++    + NI  Y+++I
Sbjct: 363 HAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILI 422

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+ GR+E A+     L  KG    V TYNI+INGLC +G+  EA  LL +M++ GC 
Sbjct: 423 DGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCT 482

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  ++ T+I+     +E  +A   L++
Sbjct: 483 PDVVTYETIIRALFKNDENHKAEKLLRE 510



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 117/213 (54%), Gaps = 27/213 (12%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   YGI ING+CK+ E  +A++       K +  +V +YS++I+ LC    + EA 
Sbjct: 149 FRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAY 208

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           EL+ +M+ + ++ ++VT++ LI+  +   G+F  A  L   +       ++  +++++D 
Sbjct: 209 ELYSQMIVKKVSPDVVTFSALIY-GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDA 267

Query: 120 LCRVGRWEEAR-------KKLDQLSE----------KGLVPGVVTYNILINGLCKKGMIM 162
           LC+ G  +E +       K+++Q+++          + + P V +Y I+I  LCK  M+ 
Sbjct: 268 LCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVD 327

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           EA  L  +M+ KG  PD  +++++I G L K+E
Sbjct: 328 EALSLFNEMRCKGITPDKVTYSSLIDG-LCKSE 359



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  C + E+D A       +K G   D    ++LI GLC   ++ EA+   D ++A+G 
Sbjct: 90  INCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGF 149

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               V+Y  LI+   +     +A+ +L+ ++      N+ +YS +ID LC+     EA +
Sbjct: 150 RLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYE 209

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              Q+  K + P VVT++ LI G C  G   EA  L  +M      PD  +FN ++    
Sbjct: 210 LYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALC 269

Query: 192 VKNETDRASSFL 203
            +  T    + L
Sbjct: 270 KEGSTKETKNVL 281



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N + Y I I+G+CK    ++A       + KG  + V+ Y+ +INGLC    
Sbjct: 406 IKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGL 465

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA+ L +KM   G T ++VTY  +I   ++      A  LL+ +
Sbjct: 466 FDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREM 511



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           +L    + P +VT+N +IN  C  G +  A  +L ++ + G  PD+ +  T+I+G  +  
Sbjct: 73  RLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNG 132

Query: 195 ETDRASSF 202
           +   A  F
Sbjct: 133 KVHEALHF 140


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 118/203 (58%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   +NG CKI  I+ A+       +KG+  D+  ++++I+GLC   R   A +LF
Sbjct: 236 NVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             + A G T  ++TY  L+ D   K G    A AL Q ++R   + N+ +Y+++ID LC+
Sbjct: 296 RYICAHGHTPNIMTYGVLL-DGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCK 354

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++ ++   +L ++GL P V TY  L+  LCK+G+I+EA KL  +M+E GC PD  +
Sbjct: 355 CGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCA 414

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +IQGFL   +   A   +++
Sbjct: 415 YNVIIQGFLQHKDPSMARQLVEE 437



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H   I IN  C +  +D         +K G+   +  +++L+NGLC   ++ + + L+
Sbjct: 96  DIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLY 155

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M+ +G+   + TYN +I ++  K G+ + A+  L+ +E+     N+  YS +IDG C 
Sbjct: 156 DDMLVRGLQPNVYTYNVII-NSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCL 214

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ +EAR   D +  KG  P V TY  L+NG CK   I EA +LL +   KG  PD  +
Sbjct: 215 RGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVT 274

Query: 183 FNTVIQGF 190
           F T+I G 
Sbjct: 275 FTTIISGL 282



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +  + N + Y + IN + K  + + A+       K G   +V  YS+LI+G C   
Sbjct: 157 DMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRG 216

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA  +FD MV++G T  + TY  L++   + +    A+ LL    R     +I  ++
Sbjct: 217 QMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFT 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLCR GR   A++    +   G  P ++TY +L++GLCK G + EA  L  +M+  
Sbjct: 277 TIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS 336

Query: 175 GCFPDSTSFNTVI 187
              P+   +  +I
Sbjct: 337 TVKPNLVIYTILI 349



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 85/173 (49%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D+   S LIN  C  +R+   + +  K++  G+   +VT+  L++    +      
Sbjct: 92  GIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQV 151

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M L   +     + N+  Y+++I+ L + G+  EA   L Q+ + G VP VV Y+ LI+G
Sbjct: 152 MMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDG 211

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            C +G + EA  +   M  KGC P+  ++ +++ G+      + A   L + +
Sbjct: 212 YCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETL 264



 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++     K N  +Y I I+ +CK  +I          I +G+  +V+ Y++L+  LC   
Sbjct: 332 EMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEG 391

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA +LF KM   G T +   YN +I    + +    A  L++ +    +  +    +
Sbjct: 392 LIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRA 451

Query: 115 LVID 118
           L+ D
Sbjct: 452 LLND 455


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING CK   ID A         K +  D+F YS+L+ G C   R +EA EL 
Sbjct: 219 NVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELL 278

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M + G+   L+TY+ ++ D   K G    A  LL+ ++  K E NI +Y+++I+G+C 
Sbjct: 279 KEMCSYGLLPNLITYS-IVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E AR+    L  KG+ P VVTY ++I+GL K G+  EA +L  +M   GC P+S +
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCT 397

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +IQGFL   +T  A   +++
Sbjct: 398 YNVIIQGFLRNGDTPNAVRLIEE 420



 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  K N   Y   I+ +CK R +  A       +K+GI  DVF YSS+++G C   R
Sbjct: 71  MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGR 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +MV + +    VT+  LI    +K+    A  + +T+     E ++  Y+ 
Sbjct: 131 VNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNA 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C   + +EA+K  + +  KG  P V +YNILING CK G I EA  LL +M  K 
Sbjct: 191 LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  +++T+++GF        A   LK+
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKE 280



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ++G+C        ++  D  +K G   DV  YS++INGLC       A++L  KM
Sbjct: 12  TFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKM 71

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G    +V YN +I    + +    AM     + ++    ++  YS ++ G C +GR 
Sbjct: 72  EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRV 131

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA     Q+ E+ ++P  VT+ ILI+GLCKK MI EA  +   M EKG  PD  ++N +
Sbjct: 132 NEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNAL 191

Query: 187 IQGFLVKNETDRA 199
           + G+  +++ D A
Sbjct: 192 VDGYCSRSQMDEA 204



 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 9/195 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    N   + I I+G+CK R I  A        +KG+  DV+ Y++L++G C+ ++
Sbjct: 141 MVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQ 200

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA +LF+ M  +G    + +YN LI+ +  K GR   A  LL  +       +I  YS
Sbjct: 201 MDEAQKLFNIMDRKGCAPNVRSYNILINGHC-KSGRIDEAKGLLAEMSHKSLTPDIFTYS 259

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+VGR +EA++ L ++   GL+P ++TY+I+++GLCK G + EA +LL  M+E 
Sbjct: 260 TLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQES 319

Query: 175 GCFPDSTSFNTVIQG 189
              P+   +  +I+G
Sbjct: 320 KIEPNIFIYTILIEG 334



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G+   LVT+N L+     K     A+ L   + +  +E ++  YS +I+GLC++G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + L ++ EKG  P VV YN +I+ LCK  ++ EA     +M ++G  PD  ++++
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ GF      + A+S  K+
Sbjct: 121 ILHGFCNLGRVNEATSLFKQ 140



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E + + N  +Y I I GMC   ++++A         KGI   V  Y+ +I+GL     
Sbjct: 316 MQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGL 375

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA ELF +M   G      TYN +I          +A+ L++ +    +  +   + +
Sbjct: 376 SNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRM 435

Query: 116 VID 118
           + D
Sbjct: 436 LSD 438


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 122/213 (57%), Gaps = 9/213 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           + +T+     + H Y I ING+CKI+ +D A+       +K +  D   Y+SLI+ LC  
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKS 386

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            R+    +LFD+M+ +G   +++TYN LI D   K G    A+AL   ++      N+  
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLI-DALCKNGHLDRAIALFNKMKDQAIRPNVYT 445

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +++++DGLC+VGR + A +    L  KG    V TY ++INGLCK+G++ EA  L  +M+
Sbjct: 446 FTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRME 505

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + GC  D+ +F  +I+ F  K+E D+A   +++
Sbjct: 506 DNGCISDAVTFEIMIRAFFDKDENDKAEKLVRE 538



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +    + + Y I ++ +CK  ++  A       +K  + LDV VYS+L++G C  N
Sbjct: 258 EMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVN 317

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A  +F  M   G+T ++  Y+ +I+   + +    A+ L + + +     +   Y+
Sbjct: 318 EVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYT 377

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID LC+ GR        D++ ++G  P V+TYN LI+ LCK G +  A  L  +MK++
Sbjct: 378 SLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQ 437

Query: 175 GCFPDSTSFNTVIQGF 190
              P+  +F  ++ G 
Sbjct: 438 AIRPNVYTFTILLDGL 453



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 11/213 (5%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKE 58
           Q F+ +   YGI ING+CKI E  +AI+         I  +V +YS +I+ LC    + E
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDE 216

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +L+ +MV +GI+ ++VTY+ L+           A+ LL  +  +    +I  Y++++D
Sbjct: 217 AYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVD 276

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ G+ +EA   L  + +  +   VV Y+ L++G C    +  A ++   M + G  P
Sbjct: 277 ALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTP 336

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL----KKNM 207
           D   ++ +I G       D A +      +KNM
Sbjct: 337 DVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + ++    I IN  C   ++  A       +K G   +    ++L+ GLC   ++KEA+ 
Sbjct: 90  EPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALR 149

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             DK++AQG     ++Y  LI+   +     +A+ LL+ +ER     N+ +YS++ID LC
Sbjct: 150 FHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLC 209

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +    +EA     ++  KG+ P VVTY+IL++G C  G +  A  LL +M  +   PD  
Sbjct: 210 KDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIY 269

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           ++  ++     + +   A + L
Sbjct: 270 TYTILVDALCKEGKVKEAENVL 291



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 42/168 (25%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+ +CK   +D AI        + I  +V+ ++ L++GLC   RLK A+E F  ++
Sbjct: 411 YNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLL 470

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G                                   Y LN+  Y+++I+GLC+ G  +
Sbjct: 471 TKG-----------------------------------YCLNVRTYTVMINGLCKEGLLD 495

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EA     ++ + G +   VT+ I+I     K    +A+KL+ +M  +G
Sbjct: 496 EALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543



 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           PL H+  +   +F+ M  +       +  N  + SLV      V R+  A     Q+   
Sbjct: 34  PLTHNADDAVSQFNHMFHVHPTPH-TFHFNKILISLV-----NVKRYPTAISLYKQMELS 87

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + P   T NI+IN  C  G ++ A   + ++ + G  P++ + NT+++G  ++ +   A
Sbjct: 88  EVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEA 147

Query: 200 SSFLKK 205
             F  K
Sbjct: 148 LRFHDK 153


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING+ KI+ +D A+        KGI  D   Y+SLI+GLC   R+  A +L D+
Sbjct: 340 HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDE 399

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   GI A+++TYN LI    +      A+AL++ ++    + ++  Y+++IDGLC+ GR
Sbjct: 400 MHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGR 459

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A+     L  KG      TYNI+INGLCK+G+  EA+ LL +M+  G  PD+ ++ T
Sbjct: 460 LKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYET 519

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+    K+E ++A   L++
Sbjct: 520 IIRALFRKDENEKAEKLLRE 539



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLING 49
           F +  +  K  +H     +   ING+C   K++E     D  I  G  LD   Y +LING
Sbjct: 114 FSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLING 173

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC     + A+++  K+  + +  ++V YN +I+   + +    A  L   +   +   +
Sbjct: 174 LCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPD 233

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  ++ +I G C VG+ +EA     ++  K + P V T++IL++ LCK G I  A  +L 
Sbjct: 234 VVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLA 293

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            M ++G  PD  ++++++ G+ + NE ++A
Sbjct: 294 VMMKQGVIPDVVTYSSLMDGYCLVNEVNKA 323



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I IN +CK + +  A       I K I  DV  ++SLI G C   +LKEA  LF +M
Sbjct: 201 MYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEM 260

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS--------------------------------- 93
           V + I  ++ T++ L+ D   K G  +                                 
Sbjct: 261 VLKNINPDVYTFSILV-DALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNE 319

Query: 94  ---AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  +  T+ R     +   Y+++I+GL ++   +EA     ++  KG+ P  VTYN 
Sbjct: 320 VNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+GLCK G I  A +L+ +M   G   D  ++N++I      +  D+A + +KK
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKK 434



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I +N  C + E+  A       +K G       +++LING+C   +LKEA+   D ++
Sbjct: 97  FNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVI 156

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A G   + V+Y  LI+   +     +A+ +L+ +E      ++ +Y+++I+ LC+     
Sbjct: 157 ALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVS 216

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   ++  K + P VVT+N LI G C  G + EA  L  +M  K   PD  +F+ ++
Sbjct: 217 DAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILV 276

Query: 188 QGFLVKNETDRASSFL 203
                     RA + L
Sbjct: 277 DALCKDGNITRAKNML 292



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI   +  ++ L+N  C    +  A  +F K++  G     +T+N LI+          
Sbjct: 88  KGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKE 147

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     +    + L+   Y  +I+GLC++G    A + L ++  K +   VV YNI+IN
Sbjct: 148 ALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIIN 207

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            LCK   + +A +L  +M  K   PD  +FN++I GF V  +   A
Sbjct: 208 SLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEA 253



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVI 117
           V  F +M+    T  +V +N ++    +       +A++L   LE       I  +++++
Sbjct: 42  VSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILV 101

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +  C +G    A     ++ + G  P  +T+N LING+C  G + EA      +   G  
Sbjct: 102 NCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFH 161

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            D  S+ T+I G     ET  A   LKK
Sbjct: 162 LDQVSYRTLINGLCKIGETRAALQMLKK 189



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + + + Y I I+G+CK   + +A       + KG  ++ + Y+ +INGLC    
Sbjct: 435 IKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGL 494

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA  L  KM   GI  + VTY  +I   + K     A  LL+ +
Sbjct: 495 FNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 113/191 (59%), Gaps = 8/191 (4%)

Query: 8   FKGNFHVYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N   Y   I+G+CK       +E+   +K  G+  D F YS+LI+GLC  ++++EA 
Sbjct: 158 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAE 217

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++  +M   G T ++V Y+ +IH   +      A   LQ + + +   ++  Y+ VIDGL
Sbjct: 218 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGL 277

Query: 121 CRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C++G+  EA+  LDQ+ E G ++P VVTY+ +INGLCK  M++EA KLL +M + GC PD
Sbjct: 278 CKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 337

Query: 180 STSFNTVIQGF 190
             ++ T+I G 
Sbjct: 338 VVTYTTIIDGL 348



 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 117/215 (54%), Gaps = 12/215 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICL-DVFVYSSLINGLCTF 53
           ++ +QR   +   Y   I+G+CK+ +I       D   + G  L DV  YS++INGLC  
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           + L EA +L D+M   G   ++VTY  +I D   K GR   A  LLQ ++R     N+  
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTII-DGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 375

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I GLC+  + +EA + ++++   G  P +VTYN ++NGLC  G I EA +L+ +MK
Sbjct: 376 YTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 435

Query: 173 E--KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +    C PD+ ++ T++   +  +    A   L++
Sbjct: 436 DGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQ 470



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 10/198 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R +G   N   Y + ++ +CK+  + +A       I+ G   +V  ++SL++G C 
Sbjct: 80  LEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCK 139

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              + +A +L   MVA+G+   +VTY+ LI    + Q    A  +L+ ++      +   
Sbjct: 140 RGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFT 199

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC+  + EEA + L +++  G  P VV Y+ +I+  CK G ++EA K L +M+
Sbjct: 200 YSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMR 259

Query: 173 EKGCFPDSTSFNTVIQGF 190
           ++   PD  ++NTVI G 
Sbjct: 260 KQRKSPDVVTYNTVIDGL 277



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I    + ++++ A+K       +G   ++  Y+ L++ LC  + +  A ++ 
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM+  G    ++T+N L+ D + K+G    A  LL  +       N+  YS +IDGLC+
Sbjct: 116 KKMIEGGFAPNVMTFNSLV-DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             ++ EA++ L+++   G+ P   TY+ LI+GLCK   I EA+++L +M   GC PD   
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 183 FNTVIQGF 190
           ++++I  F
Sbjct: 235 YSSIIHAF 242



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ LL+ ++   +  +   ++ +I  +   G  + A   +D L   G  P VVTY  L
Sbjct: 7   HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTAL 63

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I    +   + EA KLL +M+E+GC P+  ++N ++      +    A   +KK
Sbjct: 64  IAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 118/200 (59%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HVY I ING CKI+ +D A+        + I  D   Y+SLI+GLC   R+  A EL D+
Sbjct: 337 HVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDE 396

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G  A+++TYN LI    +      A+AL++ ++    +L++  Y+++IDGLC+ GR
Sbjct: 397 MRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGR 456

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A+     L  KG    V TY I+INGLC +G++ EA+ LL +M++ GC PD+ +  T
Sbjct: 457 LKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCET 516

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+     ++ +RA   L++
Sbjct: 517 IIRALFENDKNERAEKLLRE 536



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 42/199 (21%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   YG  ING+CKI E  +A++       K +  DV +YS++I+GLC    + +A 
Sbjct: 172 FHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+ +M+ + I+  +VT N LI+                                   G 
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIY-----------------------------------GY 256

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG+++EA   L ++  K + P V T+NIL++ LCK+G I EA   +  M ++G  PD 
Sbjct: 257 CIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDV 316

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++++++ G+ + NE ++A
Sbjct: 317 VTYSSLMDGYCLVNEVNKA 335



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  ++ + K++   + I         GI  ++   S LIN  C   +++ A  +F K++
Sbjct: 74  FGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKIL 133

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G     +T   L+           A+     +    +  N   Y  +I+GLC++G   
Sbjct: 134 KMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETR 193

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L Q+  K +   VV Y+ +I+GLCK  ++ +A +L  +M  K   P   + N++I
Sbjct: 194 AALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLI 253

Query: 188 QGFLVKNETDRASSFLKK 205
            G+ +  +   A   L++
Sbjct: 254 YGYCIVGQFKEAFGLLRE 271


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 120/210 (57%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++  R   N   Y I ING CKI+ +D A+        +GI      Y+SLI+GLC   R
Sbjct: 324 ISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGR 383

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A EL D+M    I A++VTYN LI    + Q    A+AL++ ++    + N+  Y++
Sbjct: 384 IPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNI 443

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+ G+ + A+     L  KG      TYNI+INGLCK+G+  EA+ LL +M++ G
Sbjct: 444 LIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNG 503

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD+ ++ T+IQ    K+E ++A   L++
Sbjct: 504 IIPDAVTYETIIQALFHKDENEKAQKLLRE 533



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 17/204 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   YGI ING+CK+ +  +A++       K +  +V +YS++I+GLC    + +A 
Sbjct: 154 FHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAY 213

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            L+ +M+ + I   +VT++ LI+       ++   R     +++ +  D Y  NI     
Sbjct: 214 GLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNI----- 268

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D LC+ G+ +EA+  +  + ++G+ P VVTYN L++G C    + +A  +L  +    
Sbjct: 269 LVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMR 328

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+S S+N +I GF      D A
Sbjct: 329 VAPNSRSYNIMINGFCKIKMVDEA 352



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 4/195 (2%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG  I G  K   R  +  + K I  D + ++ L++ LC   ++KEA  +   M+ +G+
Sbjct: 235 IYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGV 294

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN L+           A  +L  + R +   N   Y+++I+G C++   +EA  
Sbjct: 295 EPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALC 354

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQGF 190
              ++  +G+ P  VTYN LI+GLCK G I  A +L+ +M    C P D  ++N++I  F
Sbjct: 355 LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEM-HNNCIPADIVTYNSLIDVF 413

Query: 191 LVKNETDRASSFLKK 205
                 D+A + +KK
Sbjct: 414 CKNQHVDKAIALVKK 428



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 56/226 (24%)

Query: 34  KGICLDVFVYSSLIN---------------------GLCTFNRLKEAVELFDKMVAQGIT 72
           KG+  D+F  S LIN                     GLC   ++ EA+   D ++A G  
Sbjct: 96  KGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFH 155

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---------- 122
              VTY  LI+   +     +A+ +L+ +E      N+ +YS +IDGLC+          
Sbjct: 156 LNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGL 215

Query: 123 -------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
                                    VG++++A +  +++  K + P   T+NIL++ LCK
Sbjct: 216 YSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCK 275

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +G I EA  ++  M ++G  P   ++NT++ G+ + NE  +A   L
Sbjct: 276 EGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVL 321


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 114/191 (59%), Gaps = 8/191 (4%)

Query: 8   FKGNFHVYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N   Y   I+G+CK       +E+   +K +G+  D F YS+LI+GLC  ++++EA 
Sbjct: 280 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAE 339

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++  +M   G T ++V Y+ +IH   +      A   LQ + + +   ++  Y+ VIDGL
Sbjct: 340 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGL 399

Query: 121 CRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C++G+  EA+  L+Q+ E G ++P VVTY+ +INGLCK  M++EA KLL +M + GC PD
Sbjct: 400 CKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 459

Query: 180 STSFNTVIQGF 190
             ++ T+I G 
Sbjct: 460 VVTYTTIIDGL 470



 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 12/215 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTF 53
           ++ +QR   +   Y   I+G+CK+ +I  A            +  DV  YS++INGLC  
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKS 438

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           + L EA +L D+M   G   ++VTY  +I D   K GR   A  LLQ ++R     N+  
Sbjct: 439 DMLVEAQKLLDRMCKAGCNPDVVTYTTII-DGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 497

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I GLC+  + +EA + ++++   G  P +VTYN ++NGLC  G I EA +L+ +MK
Sbjct: 498 YTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 557

Query: 173 E--KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +    C PD+ ++ T++   +  +    A   L++
Sbjct: 558 DGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQ 592



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 10/198 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R +G   N   Y + ++ +CK+  + +A       I+ G   +V  ++SL++G C 
Sbjct: 202 LEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCK 261

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              + +A +L   MVA+G+   +VTY+ LI    + Q    A  +L+ ++      +   
Sbjct: 262 RGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFT 321

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC+  + EEA + L +++  G  P VV Y+ +I+  CK G ++EA K L +M+
Sbjct: 322 YSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMR 381

Query: 173 EKGCFPDSTSFNTVIQGF 190
           ++   PD  ++NTVI G 
Sbjct: 382 KQRKSPDVVTYNTVIDGL 399



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+ +I+G C    L  A+EL ++M + G   +  T+ P+I           AM  L
Sbjct: 111 DVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHL 170

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +++  D    N+  Y+ +I    R  + EEA K L+++ E+G  P +VTYN+L++ LCK 
Sbjct: 171 RSMGCDP---NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKL 227

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            M+  A  ++ +M E G  P+  +FN+++ GF  +   D A   L
Sbjct: 228 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLL 272



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G C   ++ +A++        G   D F ++ +I  +     L  A    D + 
Sbjct: 115 YNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLR 171

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G    +VTY  LI      +    AM LL+ +       N+  Y++++D LC++    
Sbjct: 172 SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVG 231

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A+  + ++ E G  P V+T+N L++G CK+G + +A KLL  M  KG  P+  +++ +I
Sbjct: 232 AAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI 291

Query: 188 QGF 190
            G 
Sbjct: 292 DGL 294



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V +YNI+I+G C  G +  A +LL +MK  G  PD+ +   +I       + D A   
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 203 LK 204
           L+
Sbjct: 170 LR 171


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++ +    N   Y I ING CKI+ +D A+K       K I  DV  YSSLI+GLC   R
Sbjct: 464 MSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGR 523

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+EL D+M  +G   +++TYN ++    +K     A+ LL  L+      ++  Y++
Sbjct: 524 ISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTI 583

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC+ G+ E+ARK  + L  KG    V  Y ++I G C KG+  EA  LL +M+E G
Sbjct: 584 LVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENG 643

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD+ ++  +I     K+E D A   L++
Sbjct: 644 CIPDAKTYEIIILSLFEKDENDMAEKLLRE 673



 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 106/185 (57%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+GMCK + ++ A       + K I  DVF Y++LI+G C   +LK+A++LF+KM
Sbjct: 335 MYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKM 394

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            ++ I  ++ T++ L+ D + K G    A  +L  + +   + ++  YS ++DG C V  
Sbjct: 395 TSKNIIPDVYTFSILV-DGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A    + +S +G+   V +YNI+ING CK  M+ EA KL  +M  K  FPD  ++++
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 186 VIQGF 190
           +I G 
Sbjct: 514 LIDGL 518



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G  LD   Y +LINGLC     K A+EL  +   + +  ++V YN +I    + 
Sbjct: 287 DKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKD 346

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A  L       +   ++  Y+ +I G C VG+ ++A    ++++ K ++P V T+
Sbjct: 347 KHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTF 406

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           +IL++G CK G I EA  +L  M ++   PD  ++++++ G+ + NE ++A S
Sbjct: 407 SILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAES 459



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 45/181 (24%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           E  ++G   +   Y   ++ +CK   +D AI        +GI  D+  Y+ L+ GLC   
Sbjct: 533 EMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSG 592

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A ++F+ ++ +G   ++  Y                                   +
Sbjct: 593 KLEDARKVFEDLLVKGYNLDVYAY-----------------------------------T 617

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C  G ++EA   L ++ E G +P   TY I+I  L +K     A+KLL +M  +
Sbjct: 618 VMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMR 677

Query: 175 G 175
           G
Sbjct: 678 G 678



 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 106 YELNIEVYSLVIDGLCRVGRWE-EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           +++ IE +   I   C +  +E        ++ + G  P  +T    I G C KG I +A
Sbjct: 223 FKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQA 282

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
                ++   G   D  S+ T+I G     ET  A   L++N
Sbjct: 283 LHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRN 324


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 124/202 (61%), Gaps = 9/202 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  +  K + + Y I ING CK+ +ID A++       +G+  +   Y++LI  LC   R
Sbjct: 171 MVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALR 230

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
            ++A  LF KM A G++ +++ Y+ L+ D + KQG    M  L Q ++R   + ++ VY+
Sbjct: 231 PRDAQVLFRKMCACGLSPDILAYSTLL-DGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYT 289

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G+CR  + ++A++ L +L  +GL P V TY  L++GLC++G I+EA +L  +M+E 
Sbjct: 290 IIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEED 349

Query: 175 GCFPDSTSFNTVIQGFLVKNET 196
           GC P S S+N ++QG L  N+T
Sbjct: 350 GCMPGSCSYNVLLQGCLQHNDT 371



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           E  F+G   N     I IN  C +  +D         +K+G   DV ++++LI+G+C   
Sbjct: 65  EMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIG 124

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
           + + A  L  +M   G   ++VT N L+   +  QG+   +  +   +     + ++  Y
Sbjct: 125 KTELAAGLLKEMGLVGCVPDVVTCNSLMR-GYCSQGKIDKVRKIFHLMVSKGLKPDVYSY 183

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S+ I+G C+V + +EA +  D++S +G+VP  VTYN LI  LC+     +A  L  +M  
Sbjct: 184 SIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCA 243

Query: 174 KGCFPDSTSFNTVIQGFLVKNETD 197
            G  PD  +++T++ GF  +   D
Sbjct: 244 CGLSPDILAYSTLLDGFCKQGNLD 267



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 73/147 (49%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           F  L +A+  F++M+ +     ++ +N L+      +   + ++L + +E    + N+  
Sbjct: 18  FGNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCT 77

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            S++I+  C +   +       +  ++G  P VV +  LI+G+C+ G    A  LL +M 
Sbjct: 78  LSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMG 137

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
             GC PD  + N++++G+  + + D+ 
Sbjct: 138 LVGCVPDVVTCNSLMRGYCSQGKIDKV 164



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K +  VY I INGMC+ R++  A       I +G+  DV  Y++L++GLC   
Sbjct: 275 EMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREG 334

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            + EA+ LF KM   G      +YN L+    +     + + L+  +
Sbjct: 335 SIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEM 381


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H Y   ING CKI+ +D A+        KGI  D   Y+SLI+GLC   R+  A EL 
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELV 406

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G  A + TYN LI    +      A+AL++ ++    + ++  ++++I GLC+V
Sbjct: 407 DEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKV 466

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR + A+     L  KG      TYNI++NGLCK+G+  EA+ LL +M + G  PD+ ++
Sbjct: 467 GRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTY 526

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+IQ    K+E ++A   L++
Sbjct: 527 ETLIQALFHKDENEKAEKLLRE 548



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A       I K I  DV  +S+LI G C   +L+EA  
Sbjct: 205 KINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFG 264

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +MV + I  +  T+N L+ D   K+G    A  +L  + ++    N+  YS ++DG 
Sbjct: 265 LFREMVLKNINPDYYTFNILV-DALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C V +  +A+  L+ +S+ G  P   +Y  +ING CK  M+ EA  L   M+ KG  PD 
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK 383

Query: 181 TSFNTVIQG 189
            ++N++I G
Sbjct: 384 VTYNSLIDG 392



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +   I G+C   K++E     D  +  G  LD F Y +LINGLC     + A+++  K+ 
Sbjct: 141 FNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKID 200

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + +   +V YN +I    + +    A  L   +   K   ++  +S +I G C VG+ E
Sbjct: 201 GKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLE 260

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA     ++  K + P   T+NIL++ LCK+G +  A  +LV M ++G  P+  ++++++
Sbjct: 261 EAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLM 320

Query: 188 QGFLVKNETDRASSFL 203
            G+ + N+ ++A   L
Sbjct: 321 DGYCLVNQVNKAKHVL 336



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEK 88
            GI  D+F ++ LIN  C    +  A  +  K++  G   + +T+N LI     +   ++
Sbjct: 97  HGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKE 156

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
              F    L      D++      Y  +I+GLC++G    A + L ++  K +   VV Y
Sbjct: 157 ALHFHDHVLALGFHLDQFS-----YGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMY 211

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N +I+ LCK  ++++A +L  QM  K   PD  +F+ +I GF +  + + A    ++
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFRE 268



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 2/148 (1%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVI 117
           V  F+ ++    T+ ++ +N ++    +       +A++L + LE      +I  ++++I
Sbjct: 51  VSSFNHLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILI 110

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +  C +     A   + ++ + G  P  +T+N LI GLC  G + EA      +   G  
Sbjct: 111 NCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFH 170

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            D  S+ T+I G     ET  A   L+K
Sbjct: 171 LDQFSYGTLINGLCKIGETRTALQMLRK 198


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 106/194 (54%), Gaps = 5/194 (2%)

Query: 15  YGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLC-TFNRLKEAVELFDKMVAQ 69
           Y   +NG+CK   +D A    + KG   +V  YS+LI+GLC    RL+ A +L +KMV  
Sbjct: 193 YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++V+YN LIH    +QG   A+ L  ++ R  YE  +  Y+++IDGL +  R  EA
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEA 312

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +    L + GL P  +TY + I+GLCK G + +A  +L  M EKGC PD  S N VI G
Sbjct: 313 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 372

Query: 190 FLVKNETDRASSFL 203
              +   D A   L
Sbjct: 373 LCKEKRVDEAEVLL 386



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 10/199 (5%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK + +D A         KG   +   +++LI G C   + K+A+  F +M+ +G+
Sbjct: 370 INGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGV 429

Query: 72  TAELVTYNPLIHD--NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
              +VTYN L+       ++GR   A+ L   +       ++  YS +IDGL + G+ ++
Sbjct: 430 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 489

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           AR+ L  +  KG +P V TYN LI+GLC    + EA +L V M EKGC PD+ ++ T+I 
Sbjct: 490 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIIS 549

Query: 189 GFLVKNETDRASSFLKKNM 207
               +   D+A +    ++
Sbjct: 550 ALCKQEMVDKALALFDGSL 568



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 10/207 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           +D   + +  + +  GI +  + K  +I+ A +       KG+C D+  ++  I+GLC  
Sbjct: 5   YDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRA 63

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           +R+ +A  +FD M   G     +TYN L+       GR S A AL + + +  Y  ++  
Sbjct: 64  SRIGDAQTVFDGMRKHGFWPNRITYNALLS-GLCNGGRMSDAQALYERMIKAGYSPDVVT 122

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C+VG+ +EA K  D   ++G VP VVTYN LING CK   + EA ++L +M 
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +   PD  ++N+++ G       D A
Sbjct: 183 SESLVPDVVTYNSLVNGLCKNGRVDEA 209



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 12/199 (6%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD + +  F  N   Y   ++G+C    +  A       IK G   DV  Y++L++G C 
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +L EA+++FD  V +G   ++VTYN LI+   +      A  +LQ +  +    ++  
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME-ADKLLVQM 171
           Y+ +++GLC+ GR +EAR     + +KG  P V+TY+ LI+GLC++   +E A +LL +M
Sbjct: 193 YNSLVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKM 249

Query: 172 KEKGCFPDSTSFNTVIQGF 190
              GC PD  S+N +I G 
Sbjct: 250 VLNGCKPDIVSYNALIHGL 268



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           Q ++     Y I I+G+ K   ++ A       +K G+  D   Y+  I+GLC   R+++
Sbjct: 287 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 346

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+ +   M  +G   ++V++N +I+   +++    A  LL  +E      N   ++ +I 
Sbjct: 347 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 406

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK---KGMIMEADKLLVQMKEKG 175
           G CR G+W++A     ++ ++G+ P VVTYNIL++GLCK   +G I EA  L   M EKG
Sbjct: 407 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG 466

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  +++ +I G     + D A   L
Sbjct: 467 RVPDVVTYSALIDGLGKAGKLDDARRLL 494



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 5/177 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTF---NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +K+G+   V  Y+ L++GLC      R+KEA+ LFD M+ +G   ++VTY+ LI D   K
Sbjct: 425 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALI-DGLGK 483

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G+   A  LL  +E      N+  Y+ +I GLC + + +EA +    + EKG VP  +T
Sbjct: 484 AGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTIT 543

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y  +I+ LCK+ M+ +A  L     E G  P S  + ++I G       D A   L+
Sbjct: 544 YGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 118/208 (56%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++  + N   Y I ING+CK + +D A+        K I  DV  Y+ LI+GLC   +
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGK 302

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  ++EL D+M + G T +++TYN L+H   +      A+ L++ ++    + N+  Y+ 
Sbjct: 303 ISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTT 362

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+ GR E+A     ++  +G    V TYN++INGLCKKG+  EA  LL +M++  
Sbjct: 363 LIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNA 422

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C PD+ S+ T+I     K ET + +  L
Sbjct: 423 CIPDAVSYETIIYALSEKGETVKTNKLL 450



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 4/187 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           FK +   Y I +NG+CK+ E  +A+    K  +  DV +YS++I+ LC    + +A  L+
Sbjct: 111 FKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLY 170

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+A+GI   + T++ L+    + +    AM LL  + +   + N+  Y  ++DG C V
Sbjct: 171 SEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLV 230

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  +A    + + ++G+ P V  YNI+INGLCKK  + EA  L  +M  K   PD  ++
Sbjct: 231 NQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTY 290

Query: 184 NTVIQGF 190
           N +I G 
Sbjct: 291 NILIDGL 297



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 107/187 (57%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + + I ++ +CK R+   A+       KKG+  +V  Y ++++G C  N++ +A+ +F
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + MV +G+   +  YN +I+   +K+    AM L + +   K   ++  Y+++IDGLC++
Sbjct: 241 NVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKL 300

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+   + + +D++   G    ++TYN L++ LCK   + +A  L+ ++K++G  P+  ++
Sbjct: 301 GKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTY 360

Query: 184 NTVIQGF 190
            T+I G 
Sbjct: 361 TTLIDGL 367



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+ +CK + +  A       I KGI  +V+ +S L++ LC   + K+A+ L   M
Sbjct: 149 MYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMM 208

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+   +VTY  ++           A+ +   + ++  E N+  Y+++I+GLC+  R 
Sbjct: 209 MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRV 268

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA     ++  K + P VVTYNILI+GLCK G I  + +L+ +M+  G   D  ++N++
Sbjct: 269 DEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSL 328

Query: 187 IQGFLVKNETDRASSFLKK 205
           +      +  D+A + +K+
Sbjct: 329 LHALCKNHHLDQAITLVKE 347



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   +   +++LI G+C   +  EA+   D +VA G   + V+Y  L+ +   K G 
Sbjct: 72  LKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILM-NGLCKMGE 130

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
               A +Q L +     ++ +YS +ID LC+     +A +   ++  KG+ P V T++IL
Sbjct: 131 --TRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSIL 188

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++ LCK     +A  LL  M +KG  P+  ++  ++ G+ + N+ ++A
Sbjct: 189 VDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKA 236



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 42/168 (25%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +CK   +D AI        +GI  +V  Y++LI+GLC   RL++A  +F +++
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEIL 384

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G    + TYN                                   ++I+GLC+ G ++
Sbjct: 385 TEGYHITVWTYN-----------------------------------VMINGLCKKGLFD 409

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EA   L ++ +   +P  V+Y  +I  L +KG  ++ +KLL  M  +G
Sbjct: 410 EALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRG 457



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 3/173 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   +   + L+N  C    +     +  K++  G     +T+  LI         + A
Sbjct: 40  GIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEA 99

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     +    ++L+   Y+++++GLC++G   E R  +  L +  +   VV Y+ +I+ 
Sbjct: 100 LLFHDHVVAHGFKLDQVSYAILMNGLCKMG---ETRAAMQMLRKTWVNADVVMYSTIIDS 156

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LCK   + +A +L  +M  KG FP+  +F+ ++       +  +A + L   M
Sbjct: 157 LCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L ++  +  A     QL   G+ P +VT  IL+N  C  G I     +L ++ 
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           + G  P+S +F T+I+G  +  +   A  F
Sbjct: 73  KMGYEPNSITFTTLIKGMCLNGQAYEALLF 102



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q  + N   Y   I+G+CK   ++ A       + +G  + V+ Y+ +INGLC   
Sbjct: 347 EIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKG 406

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
              EA+ L  +M       + V+Y  +I+   EK
Sbjct: 407 LFDEALALLSRMEDNACIPDAVSYETIIYALSEK 440


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 113/198 (57%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+ +D A+K       K I  +V  Y+SL++GLC   R   A+EL D+M 
Sbjct: 341 YSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMH 400

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G  + ++TYN ++    +      A+ LL  ++    + +I  Y+++I+GLC+VGR +
Sbjct: 401 DRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLD 460

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A+K  + L  KG  P + TY  LING C KG   E   +L +MK+ GC P++ ++  +I
Sbjct: 461 DAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILI 520

Query: 188 QGFLVKNETDRASSFLKK 205
                K+E D+A   L++
Sbjct: 521 HSLFEKDENDKAEKLLRE 538



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+ MCK + ++ A       + K I  DV  YSSLI+G C   +LK AV+
Sbjct: 195 RPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVD 254

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           LF++M++  I   + T++ LI D + K+G+   A  +L  + +   +L++  Y+ ++DG 
Sbjct: 255 LFNRMISDNINPNVYTFSILI-DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGY 313

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C V +  +A+   + ++++G+ P V +Y+I+ING CK  M+ EA KL  +M  K  FP+ 
Sbjct: 314 CLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNV 373

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++N+++ G      T  A
Sbjct: 374 VTYNSLVDGLCKSGRTSCA 392



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C +++++ A        ++G+  DV+ YS +ING C    + EA++LF++M 
Sbjct: 306 YNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH 365

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + I   +VTYN L+ D   K GR S A+ L+  +       NI  Y+ ++D +C+    
Sbjct: 366 CKQIFPNVVTYNSLV-DGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHV 424

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L ++ EKG+ P + TY +LINGLCK G + +A K+   +  KG  P+  ++ ++
Sbjct: 425 DKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSL 484

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K   D   + L K
Sbjct: 485 INGFCNKGFFDEGLAMLSK 503



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ +   YG  ING+C++ E  +A++       K +  +V +YS++I+ +C    
Sbjct: 154 VVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKL 213

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A +L+ +MV++ I+ ++VTY+ LI           A+ L   +  D    N+  +S+
Sbjct: 214 VNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSI 273

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C+ G+  EA+  L  + +K +   VVTYN L++G C    + +A  L   M ++G
Sbjct: 274 LIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRG 333

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  S++ +I GF      D A
Sbjct: 334 VTPDVWSYSIMINGFCKIKMVDEA 357



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 42/173 (24%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ++ +CK   +D AI       +KGI  D+F Y+ LINGLC   RL +A ++
Sbjct: 406 SNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKV 465

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F+ ++ +G       Y+P                            NI  Y+ +I+G C 
Sbjct: 466 FEDLLVKG-------YSP----------------------------NIYTYTSLINGFCN 490

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            G ++E    L ++ + G +P  +TY ILI+ L +K    +A+KLL +M  +G
Sbjct: 491 KGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D    + L+N       +K +  +F K++ +G   + VT+  LI     K     A
Sbjct: 88  GIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKA 147

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     +    ++L+   Y  +I+GLCRVG  + A + L ++  K + P VV Y+ +I+ 
Sbjct: 148 LYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDS 207

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           +CK  ++ +A  L  +M  K   PD  +++++I GF V
Sbjct: 208 MCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCV 245



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y + ING+CK+  +D A K       KG   +++ Y+SLING C    
Sbjct: 434 IKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGF 493

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             E + +  KM   G     +TY  LIH  +EK     A  LL+ +
Sbjct: 494 FDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 58/113 (51%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A++L Q +E +  + +    +L+++   ++G  + +     ++ +KG  P  VT+ ILI
Sbjct: 76  TALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILI 135

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GLC KG + +A     ++  +G   D  S+ T+I G     ET  A   L++
Sbjct: 136 KGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRR 188



 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  L +  +++ A     Q+   G+ P  +T N+L+N   + G I  +  +  ++ +KG
Sbjct: 64  ILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKG 123

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD+ +F  +I+G  +K E  +A  F  K
Sbjct: 124 YHPDAVTFTILIKGLCLKGEVHKALYFHDK 153


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING CK + +D A+       +K +   +  YSSLI+GLC   R+    +L 
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLI 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +G  A+++TY+ LI D   K G    A+AL   ++  +   NI  +++++DGLC+
Sbjct: 398 DEMRDRGQPADVITYSSLI-DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++    L  KG    V TYN++ING CK+G++ EA  +L +M++ GC P++ +
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFT 516

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F T+I     K+E D+A   L++
Sbjct: 517 FETIIIALFKKDENDKAEKLLRQ 539



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 42/230 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L  Q F+ N   Y   ING+CKI +  +AIK       +    DV +Y+++I+ +C +  
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQL 214

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +M  +GI+A++VTYN LI+          A+ LL  +       N+  Y++
Sbjct: 215 VSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 116 VIDGLCRVGRWEEARKKL-----------------------------------DQLSEKG 140
           ++D LC+ G+ +EA+  L                                   + +S  G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + P V TY ILING CK  M+ EA  L  +M +K   P   +++++I G 
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +  +Y   I+ MCK + +  A         KGI  DV  Y++LI G C   +LKEA+ 
Sbjct: 196 KPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIG 255

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER--------------DKY 106
           L ++MV + I   + TYN L+ D   K+G+   A ++L  + +              D Y
Sbjct: 256 LLNEMVLKTINPNVYTYNILV-DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 107 ELNIEV---------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            L  EV                     Y+++I+G C+    +EA     ++ +K +VPG+
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY+ LI+GLCK G I     L+ +M+++G   D  +++++I G       DRA +   K
Sbjct: 375 VTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNK 434



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I       D    +G   DV  YSSLI+GLC    L  A+ LF+KM 
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            Q I   + T+  L+ D   K GR   A  + Q L    Y LN+  Y+++I+G C+ G  
Sbjct: 437 DQEIRPNIFTFTILL-DGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 495

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EEA   L ++ + G +P   T+  +I  L KK    +A+KLL QM  +G
Sbjct: 496 EEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++ +CK   ++E  S +    K  +  DV  YS+L++G      +K+A  +F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M   G+T ++ TY  LI+   + +    A+ L + + +      I  YS +IDGLC+ 
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR       +D++ ++G    V+TY+ LI+GLCK G +  A  L  +MK++   P+  +F
Sbjct: 388 GRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTF 447

Query: 184 NTVIQGF 190
             ++ G 
Sbjct: 448 TILLDGL 454



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G   D    ++LI GLC   ++K+A+   DK++AQ
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V+Y  LI+   +     +A+  L+ ++    + ++ +Y+ +ID +C+     EA
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEA 218

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTYN LI G C  G + EA  LL +M  K   P+  ++N ++  
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 190 FLVKNETDRASSFL 203
              + +   A S L
Sbjct: 279 LCKEGKVKEAKSVL 292



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  D+   + LIN  C   ++     +  K++ +G   + VT N LI     K     
Sbjct: 88  KGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKK 147

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     L    ++LN   Y+ +I+G+C++G    A K L ++  +   P VV YN +I+
Sbjct: 148 ALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIID 207

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +CK  ++ EA  L  +M  KG   D  ++NT+I GF +  +   A   L
Sbjct: 208 AMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 257



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           +   + +AV  F++M+    T  ++ +N ++ D++ K   +S A++L   LE    + ++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKIL-DSFAKMKHYSTAVSLSHRLELKGIQPDL 94

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++I+  C +G+       L ++ ++G  P  VT N LI GLC KG + +A    DK
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   +  S+ T+I G     +T  A  FL+K
Sbjct: 155 LLAQ----GFQLNQVSYATLINGVCKIGDTRAAIKFLRK 189


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING CK + +D A+       +K +   +  YSSLI+GLC   R+    +L 
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLI 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +G  A+++TY+ LI D   K G    A+AL   ++  +   NI  +++++DGLC+
Sbjct: 398 DEMRDRGQPADVITYSSLI-DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++    L  KG    V TYN++ING CK+G++ EA  +L +M++ GC P++ +
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFT 516

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F T+I     K+E D+A   L++
Sbjct: 517 FETIIIALFKKDENDKAEKLLRQ 539



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A         KGI  DV  YS+LI G C   +LKEA+ 
Sbjct: 196 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIG 255

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER--------------DKY 106
           L ++MV + I   + TYN L+ D   K+G+   A ++L  + +              D Y
Sbjct: 256 LLNEMVLKTINPNVYTYNILV-DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 107 ELNIEV---------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            L  EV                     Y+++I+G C+    +EA     ++ +K +VPG+
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY+ LI+GLCK G I     L+ +M+++G   D  +++++I G       DRA +   K
Sbjct: 375 VTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNK 434



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 48/233 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI----------REIDSAIKKGICLDVFVYSSLINGLCT 52
           L  Q F+ N   Y   ING+CKI          R+ID  + K    +V +YS++I+ LC 
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKP---NVEMYSTIIDALCK 211

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           +  + EA  LF +M  +GI+A++VTY+ LI+    +     A+ LL  +       N+  
Sbjct: 212 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYT 271

Query: 113 YSLVIDGLCRVGRWEEARKKL-----------------------------------DQLS 137
           Y++++D LC+ G+ +EA+  L                                   + +S
Sbjct: 272 YNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             G+ P V TY ILING CK  M+ EA  L  +M +K   P   +++++I G 
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I       D    +G   DV  YSSLI+GLC    L  A+ LF+KM 
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            Q I   + T+  L+ D   K GR   A  + Q L    Y LN+  Y+++I+G C+ G  
Sbjct: 437 DQEIRPNIFTFTILL-DGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 495

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EEA   L ++ + G +P   T+  +I  L KK    +A+KLL QM  +G
Sbjct: 496 EEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++ +CK   ++E  S +    K  +  DV  YS+L++G      +K+A  +F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M   G+T ++ TY  LI+   + +    A+ L + + +      I  YS +IDGLC+ 
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR       +D++ ++G    V+TY+ LI+GLCK G +  A  L  +MK++   P+  +F
Sbjct: 388 GRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTF 447

Query: 184 NTVIQGF 190
             ++ G 
Sbjct: 448 TILLDGL 454



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G   D    ++LI GLC   ++K+A+   DK++AQ
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V+Y  LI+   +      A+ LL+ ++    + N+E+YS +ID LC+     EA
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 218

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTY+ LI G C +G + EA  LL +M  K   P+  ++N ++  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 190 FLVKNETDRASSFL 203
              + +   A S L
Sbjct: 279 LCKEGKVKEAKSVL 292



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  D+   + LIN  C   ++     +  K++ +G   + VT N LI     K     
Sbjct: 88  KGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKK 147

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     L    ++LN   Y+ +I+G+C++G    A K L ++  +   P V  Y+ +I+
Sbjct: 148 ALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIID 207

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            LCK  ++ EA  L  +M  KG   D  +++T+I GF ++ +   A   L
Sbjct: 208 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           +   + +AV  F++M+    T  ++ +N ++ D++ K   +S A++L   LE    + ++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKIL-DSFAKMKHYSTAVSLSHRLELKGIQPDL 94

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++I+  C +G+       L ++ ++G  P  VT N LI GLC KG + +A    DK
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   +  S+ T+I G     +T  A   L+K
Sbjct: 155 LLAQ----GFQLNQVSYATLINGVCKIGDTRGAIKLLRK 189


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I ING CK + I  A       I +G+  D+  Y++LI+GLC   RL+EA +
Sbjct: 399 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 458

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M+  G   +L TY+ L+ D + KQG  + A  L + ++    + N+ +Y+++ID +
Sbjct: 459 LFKNMLTNGNLPDLCTYSILL-DGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 517

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+    +EARK   +L  +GL P V  Y  +INGLCK+G++ EA +    M+E GC P+ 
Sbjct: 518 CKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNE 577

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+N +I+GFL   +  RA
Sbjct: 578 FSYNVIIRGFLQHKDESRA 596



 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK R ++ A+        KGI  ++F Y+SLI GLC F+R +EA  + ++M
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++  I   +VT++ LI+   ++   F A  +L+T+     E N+  YS +++G       
Sbjct: 324 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 383

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EARK  D +  KG  P V +YNILING CK   I EA +L  +M  +G  PD  S+NT+
Sbjct: 384 VEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 443

Query: 187 IQGF 190
           I G 
Sbjct: 444 IDGL 447



 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  + ++ + H Y   ING+CKI E  +A        + G   DV  YS++I+ LC   
Sbjct: 217 DMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDR 276

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA+++F  M A+GI+  + TYN LI           A A+L  +       NI  +S
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L+I+  C+ G   EAR  L  ++E G+ P VVTY+ L+NG   +  ++EA KL   M  K
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITK 396

Query: 175 GCFPDSTSFNTVIQGF 190
           GC PD  S+N +I G+
Sbjct: 397 GCKPDVFSYNILINGY 412



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK+ +        D  + +G   DV  Y+++INGLC       A  LF KM   G 
Sbjct: 199 INGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGC 258

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++VTY+ +I D+  K  R + A+ +   ++      NI  Y+ +I GLC   RW EA 
Sbjct: 259 QPDVVTYSTII-DSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 317

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L+++    ++P +VT+++LIN  CK+G + EA  +L  M E G  P+  ++++++ G+
Sbjct: 318 AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY 377

Query: 191 LVKNETDRA 199
            ++ E   A
Sbjct: 378 SLQAEVVEA 386



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 35/176 (19%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK G+ L +  +++LINGLC   +  +AVELFD MVA+G       Y P +H        
Sbjct: 184 IKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARG-------YQPDVH-------- 228

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                Y+ +I+GLC++G    A     ++ E G  P VVTY+ +
Sbjct: 229 --------------------TYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTI 268

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I+ LCK   + EA  +   MK KG  P+  ++N++IQG    +    AS+ L + M
Sbjct: 269 IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMM 324



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 42/194 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           +TE   + N   Y   +NG     E+       D  I KG   DVF Y+ LING C   R
Sbjct: 358 MTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 417

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +LF++M+ QG+T ++V+YN LI                                 
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLI--------------------------------- 444

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             DGLC++GR  EA      +   G +P + TY+IL++G CK+G + +A +L   M+   
Sbjct: 445 --DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY 502

Query: 176 CFPDSTSFNTVIQG 189
             P+   +N +I  
Sbjct: 503 LKPNMVMYNILIDA 516



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 80/146 (54%), Gaps = 1/146 (0%)

Query: 43  YSSLINGLCTFNRLKEAV-ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           ++ L++ +       +AV  L  +M   G++ +  T + LI+  ++ Q      ++L  +
Sbjct: 124 FNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKI 183

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +   +L I  ++ +I+GLC+VG++ +A +  D +  +G  P V TY  +INGLCK G  
Sbjct: 184 IKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGET 243

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVI 187
           + A  L  +M E GC PD  +++T+I
Sbjct: 244 VAAAGLFRKMGEAGCQPDVVTYSTII 269



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 48/176 (27%)

Query: 14  VYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            Y I ++G CK           R + S   K    ++ +Y+ LI+ +C    LKEA +LF
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP---NMVMYNILIDAMCKSRNLKEARKLF 530

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            ++  QG+                                   + N+++Y+ +I+GLC+ 
Sbjct: 531 SELFVQGL-----------------------------------QPNVQIYTTIINGLCKE 555

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           G  +EA +    + E G  P   +YN++I G  +      A +L+ +M+EKG   D
Sbjct: 556 GLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVAD 611



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +Y I I+ MCK R +  A K       +G+  +V +Y+++INGLC    L EA+
Sbjct: 503 LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEAL 562

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           E F  M   G      +YN +I    + +    A+ L+
Sbjct: 563 EAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLI 600


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I ING CK++ ID A       I +G+  +   Y++LI+GLC    L+EA  
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M   G    L TY+ L+ D + KQG F  A  L + ++    + N+ +Y+++ID +
Sbjct: 435 LFKNMHTNGNLPNLFTYSILL-DGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   +ARK   +L  KGL P    Y  +INGLCK+G++ EA +    M+E GC PD 
Sbjct: 494 CKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+N +I+GFL   +  RA
Sbjct: 554 ISYNVIIRGFLHHKDESRA 572



 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   + N   Y   I+   K R ++ A+        KGI  D+F Y+SLI GLC F++
Sbjct: 229 MEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  L ++M +  I  ++VT+N L+ D   K+G+ S A  +L+T+     E ++  YS
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLV-DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYS 347

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G        EARK  D +  KG  P V +YNILING CK   I EA +L  +M  +
Sbjct: 348 SLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ 407

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  P++ S+NT+I G L +  + R +  L KNM
Sbjct: 408 GLTPNNVSYNTLIHG-LCQLGSLREARNLFKNM 439



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN +CK+ +        D  + +G   DV+ Y+++INGLC       A  L  KM   G 
Sbjct: 175 INWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGC 234

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTY+ +I  + + +    A+ +   ++      +I  Y+ +I GLC   +W+EA  
Sbjct: 235 QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA 294

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++    ++P +VT+N+L++ +CK+G + EA  +L  M E G  PD  ++++++ G+ 
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYS 354

Query: 192 VKNETDRA 199
           +++E   A
Sbjct: 355 LRSEVVEA 362



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN    ++ +D A       IK G+   +  +++LIN LC   +  +A+ELF
Sbjct: 132 NIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELF 191

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MVA+G   ++ TY  +I+   +     +A  LL+ +E    + N+  YS +ID   + 
Sbjct: 192 DDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKD 251

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R  EA      +  KG+ P + TYN LI GLC      EA  LL +M+     PD  +F
Sbjct: 252 RRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTF 311

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N ++     + +   A   LK
Sbjct: 312 NVLVDTICKEGKVSEAQGVLK 332



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFS 93
           G+  +++  S LIN      R+  A  +  K++  G+   +VT+  LI  NW  K G+F+
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLI--NWLCKVGKFA 185

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AM L   +       ++  Y+ +I+GLC++G    A   L ++ E G  P VVTY+ +I
Sbjct: 186 QAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   K   + EA  +   MK KG  PD  ++N++IQG    ++   AS+ L +
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE 298



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYEL 108
           C+F  + +A+  F+ M+ +     ++ +  L+     K G++  + ++L + +E      
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLL-SAIVKMGQYYDTVISLTKQMELAGLSP 131

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           NI   S++I+    + R + A   L ++ + GL P +VT+  LIN LCK G   +A +L 
Sbjct: 132 NIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELF 191

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M  +GC PD  ++ T+I G     ET  A+  LKK
Sbjct: 192 DDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKK 228



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 48/179 (26%)

Query: 11  NFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           N   Y I ++G CK           R + S   K    ++ +Y+ LI+ +C    L++A 
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKP---NLVMYNILIDAMCKSGNLRDAR 503

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF ++  +G+                                   + N ++Y+ +I+GL
Sbjct: 504 KLFSELFVKGL-----------------------------------QPNAQIYTTIINGL 528

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C+ G  +EA +    + E G  P  ++YN++I G         A +L+ +M++KG   D
Sbjct: 529 CKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 118/202 (58%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y + I+G+ K++ +D A+        + +  DV  YSSLI+GLC   R+  A++  
Sbjct: 328 DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYV 387

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G    ++TY  LI    +      A+ALL+ ++    + N+  Y++++DGLC+ 
Sbjct: 388 DEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKD 447

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A+K    L  KG    VVTY+I+INGLCK+ +  EA  LL +M++KGC PD+ ++
Sbjct: 448 GRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAY 507

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I  F  K+  D+A   L++
Sbjct: 508 ETIINAFFEKDMNDKAEKLLRE 529



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 42/233 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N+    I IN  C +R+I+SA       +K G   D+  Y++LI GLC   ++KE++ 
Sbjct: 81  QSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLN 140

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             D++V+QGI  + V+Y  LI+   +      A+ LL+ +E +    ++ +Y+ +IDGLC
Sbjct: 141 FHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLC 200

Query: 122 R-----------------------------------VGRWEEARKKLDQLSEKGLVPGVV 146
           +                                   VG+ ++A   L+++  K + P V 
Sbjct: 201 KDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVC 260

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           T+N L++GLCK+G + EA  L+  M ++G  PD  ++N ++ G+ +  E  +A
Sbjct: 261 TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKA 313



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 9/165 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I+SA+K       +G   +V  Y+SLI+ LC  +++ +A+ L  K+ 
Sbjct: 367 YSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIK 426

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI A + TYN L+ D   K GR + A  + Q L    + +++  YS++I+GLC+   +
Sbjct: 427 DQGIQANMYTYNILV-DGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLF 485

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +EA   L ++ +KG VP  + Y  +IN   +K M  +A+KLL +M
Sbjct: 486 DEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+R   N   Y   I G C + ++D A       + K +  +V  +++L++GLC   
Sbjct: 214 EMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEG 273

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EA  L   M+ +G+  ++ TYN L+   +  +    A  +   + +     ++  YS
Sbjct: 274 KMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYS 333

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL ++   +EA    + +  + ++P VV Y+ LI+GLCK G I  A K + +M ++
Sbjct: 334 VMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDR 393

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++ ++I      ++ D+A + LKK
Sbjct: 394 GQPPNVITYTSLIDALCKSHQVDKAIALLKK 424



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 102/187 (54%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   ++G+CK   +RE  S +    K+G+  DVF Y++L++G        +A  +F
Sbjct: 258 NVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVF 317

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M   G+T ++ +Y+ +I    + +    AM L + +  +    ++  YS +IDGLC+ 
Sbjct: 318 NIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKS 377

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR   A K +D++ ++G  P V+TY  LI+ LCK   + +A  LL ++K++G   +  ++
Sbjct: 378 GRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTY 437

Query: 184 NTVIQGF 190
           N ++ G 
Sbjct: 438 NILVDGL 444



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 45/244 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNR 55
           L  Q  K +   YG  ING+CKI +   A      I+  IC  DV +Y+++I+GLC    
Sbjct: 145 LVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKL 204

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A +L+ +M  + +   +VTY  LI+          A  LL  +       N+  ++ 
Sbjct: 205 VRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNT 264

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN-------------------------- 149
           ++DGLC+ G+  EA+  +  + ++G+ P V TYN                          
Sbjct: 265 LVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMG 324

Query: 150 ---------ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
                    ++I+GL K  M+ EA  L   M+ +   PD  +++++I G     ++ R +
Sbjct: 325 VTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLC---KSGRIN 381

Query: 201 SFLK 204
           S LK
Sbjct: 382 SALK 385



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 20  NGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           N M ++R     IK G          ++  L         + LF +M   GI +  +T N
Sbjct: 38  NRMLRMRPPPPIIKFG---------KILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI+     +   SA ++   + +  Y+ +I  Y+ +I GLC  G+ +E+    D+L  +
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQ 148

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF----LVKNE 195
           G+    V+Y  LINGLCK G    A +LL +++ + C PD   +NT+I G     LV++ 
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 196 TDRASSFLKK 205
            D      +K
Sbjct: 209 FDLYCEMFEK 218



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N + Y I ++G+CK   +  A K       KG  +DV  YS +INGLC  + 
Sbjct: 425 IKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESL 484

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA+ L  KM  +G   + + Y  +I+  +EK     A  LL+ +
Sbjct: 485 FDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           + ++++    +   Y I I+G CKI+++D A+        K I  DV  Y+SLI+GLC  
Sbjct: 326 YTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKL 385

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++  A++L D+M  +G+  +++TY+ ++    +      A+ALL  L+      N+  Y
Sbjct: 386 GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDGLC+ GR E+A    + L  KG    V TY ++I+G C KG+  EA  LL +MK+
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKD 505

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
             C PD+ ++  +I+    K+E D+A
Sbjct: 506 NSCIPDAVTYEIIIRSLFDKDENDKA 531



 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+GMCK + ++ A       + KGI  +V  YS+LI+G  T  +LK+A++
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAID 253

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF----------------------------- 92
           LF+KM+ + I  ++ T+N L+ D + K G+                              
Sbjct: 254 LFNKMILENIKPDVYTFNILV-DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 312

Query: 93  -------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A ++L T+ +     +I+ Y+++IDG C++ + +EA     ++  K ++P V
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN LI+GLCK G I  A KL+ +M ++G  PD  ++++++      ++ D+A + L K
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 432



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 83/156 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   +   +++LI GLC   ++ +A+   D +VA G   + V Y  LIH   +     +A
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + LL+ ++ +  + N+ +YS +IDG+C+     +A     ++  KG+ P VVTY+ LI+G
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               G + +A  L  +M  +   PD  +FN ++ GF
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGF 277



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 42/240 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN------ 54
           +  N   +   I G+C   +I       D+ +  G  LD   Y +LI+GLC         
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 55  -----------------------------RLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
                                         + +A +L+ +MV++GI+  +VTY+ LI   
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +       A+ L   +  +  + ++  +++++DG C+ G+ +E +     + ++G+ P V
Sbjct: 243 FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 302

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY  L++G C    + +A  +L  M ++G  PD  S+N +I GF    + D A +  K+
Sbjct: 303 VTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKE 362



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 42/160 (26%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +CK  ++D AI        +GI  +++ Y+ LI+GLC   RL++A  +F+ ++
Sbjct: 410 YSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLL 469

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G    + TY  +IH                                   G C  G ++
Sbjct: 470 VKGYNITVNTYTVMIH-----------------------------------GFCNKGLFD 494

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           EA   L ++ +   +P  VTY I+I  L  K    +A+KL
Sbjct: 495 EALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 16/163 (9%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YSS+       N + +A  LF +++ Q  T   + +N ++    + +   + ++L Q +E
Sbjct: 44  YSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQME 103

Query: 103 RDK----------------YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +                 Y  N   ++ +I GLC  G+  +A    D +   G     V
Sbjct: 104 FEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQV 163

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            Y  LI+GLCK G    A  LL ++      P+   ++T+I G
Sbjct: 164 GYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDG 206


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 115/202 (56%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H Y + ING+CK + +D A+K       K +  +   YSSLI+GLC   R+ +  +L 
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLI 392

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D++  +G  A ++TYN L++   +      A+ALL  ++ +  + ++  Y+ ++DGLC+ 
Sbjct: 393 DEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKN 452

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR ++A++    L  KG    +  Y ++INGLCK+G   EA  LL QM++ GC PD+ ++
Sbjct: 453 GRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTY 512

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I      N+  +A   L++
Sbjct: 513 ETLISALFKNNKNGKAVKLLRE 534



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 107/191 (56%), Gaps = 8/191 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + + I I+G+CK  E+  A       IK+G+  +V  Y+SL++G      + +A  +F
Sbjct: 263 NVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVF 322

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + +  +G+T  + +Y+ +I+   + +    A+ L + +       N   YS +IDGLC+ 
Sbjct: 323 NTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +    +D+++ +G    ++TYN L+NGLCK   + +A  LL +MK++G  PD +++
Sbjct: 383 GRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTY 442

Query: 184 NTVIQGFLVKN 194
            T++ G L KN
Sbjct: 443 TTLVDG-LCKN 452



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+  CK + +  A       I K I  +V  ++SLI G C   +LKEAV L ++M
Sbjct: 196 MYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEM 255

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               +   + T+N LI D   K+G    A ++L  + +   E N+  Y+ ++DG   V  
Sbjct: 256 SLNNVNPNVYTFNILI-DGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A+   + +S +G+ P V +Y+++INGLCK  M+ EA KL  +M  K   P++ ++++
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 186 VIQGF 190
           +I G 
Sbjct: 375 LIDGL 379



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 43/202 (21%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK-----KGICL---DVFVYSSLINGLCTFNRLK 57
           +RF  +   YG  ING+CK  E  +A++     +G+ L   DV +Y+++I+  C    + 
Sbjct: 152 KRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVI 211

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A +L+ +M+ + I   +VT+N LI+                                  
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIY---------------------------------- 237

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G C VG+ +EA   L+++S   + P V T+NILI+GLCK+G + +A  +L  M ++G  
Sbjct: 238 -GFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVE 296

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P+  ++ +++ G+ +  E ++A
Sbjct: 297 PNVVTYTSLMDGYFLVKEVNKA 318



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 1/173 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  ++F ++ LIN      +L  A  +  K++  G   + VT N L+           
Sbjct: 82  KGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKE 141

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILI 152
           A+     + R ++ L+   Y  +I+GLC+ G    A + L ++    LV P V+ Y  +I
Sbjct: 142 ALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAII 201

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  CK  ++++A  L  +M  K  +P+  +FN++I GF +  +   A   L +
Sbjct: 202 DSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNE 254



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 51/104 (49%)

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             L  + +   I  ++ ++  L ++  ++ A     Q+  KG+ P + T+NILIN     
Sbjct: 42  HILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHL 101

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             +  A  ++ ++ + G  PD+ + NT+++G  +  +   A +F
Sbjct: 102 CQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNF 145


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI++ D A+       +K I  DV  YSSLI+GL    R+  A++L D+M 
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   + TYN ++    +      A+ALL   +   ++ +I  YS++I GLC+ G+ E
Sbjct: 428 DRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLE 487

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +ARK  + L  KG    V  Y I+I G C +G+  EA  LL +M++ GC PD+ ++  +I
Sbjct: 488 DARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547

Query: 188 QGFLVKNETDRASSFLKK 205
                K+E D A   L++
Sbjct: 548 LSLFKKDENDMAEKLLRE 565



 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 47/247 (19%)

Query: 6   QRFKGNFH-----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           QR  GN       +Y   I+ MCK++ ++ A       + KGI  DV  YS+LI+G C  
Sbjct: 214 QRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCIL 273

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQGR--FSAM------------ 95
            +LK+A++LF+KM+ + I  ++ T+N L++    D   K+G+  F  M            
Sbjct: 274 GKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 96  -----------------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                            ++  T+ +     +I+ YS++I+G C++ +++EA     ++  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           K ++P VVTY+ LI+GL K G I  A +L+ QM ++G  P+  ++N+++      ++ D+
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDK 453

Query: 199 ASSFLKK 205
           A + L K
Sbjct: 454 AIALLTK 460



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 106/191 (55%), Gaps = 7/191 (3%)

Query: 6   QRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  K + + + I +N  CK   ++E     D  +K+GI  +   Y+SL++G C    + +
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNK 348

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M   G+  ++ +Y+ +I+   + +    AM L + + R     ++  YS +ID
Sbjct: 349 AKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLID 408

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR   A + +DQ+ ++G+ P + TYN +++ LCK   + +A  LL + K+KG  P
Sbjct: 409 GLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQP 468

Query: 179 DSTSFNTVIQG 189
           D ++++ +I+G
Sbjct: 469 DISTYSILIKG 479



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 7/181 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C++  I  A       +K G   D   +++L  GLC   ++++A    DK+VA 
Sbjct: 125 ILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVAL 184

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   + ++Y  LIH   +     +A+ LLQ ++ +  + N+ +Y+ +ID +C+V    EA
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++  KG+ P VVTY+ LI+G C  G + +A  L  +M  +   PD  +FN ++  
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 190 F 190
           F
Sbjct: 305 F 305



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YSS      + N + +AV LF++++ +  T     +N ++    + +   + + L Q +E
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               + N+   +++I+  C++G    A     ++ + G VP  +T+  L  GLC KG I 
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQ 172

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +A     ++   G   D  S+ T+I G     ET  A   L++
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQR 215



 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           ++ F+ +   Y I I G+C+  +++ A K       KG  LDV+ Y+ +I G C      
Sbjct: 463 DKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFN 522

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           EA+ L  KM   G   +  TY  +I   ++K     A  LL+ +      LN
Sbjct: 523 EALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F+ +  +Y   I+G CKI  ++ A+       + G+  D   Y+SL+ GLC   R
Sbjct: 106 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 165

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A  L   MV + I   ++T+  +I D + K+G+FS AM L + + R   + ++  Y+
Sbjct: 166 WSDAARLMRDMVMRDIVPNVITFTAVI-DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 224

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR +EA++ LD +  KG +P VVTYN LING CK   + E  KL  +M ++
Sbjct: 225 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 284

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   D+ ++NT+IQG+      D A     +
Sbjct: 285 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 315



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 16/214 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T +    +   Y   ING+C    +D A       + KG   DV  Y++LING C   
Sbjct: 210 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 269

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM---ALLQTLERDKYELNIE 111
           R+ E  +LF +M  +G+  + +TYN +I      QG F A    A  +   R     NI 
Sbjct: 270 RVDEGTKLFREMAQRGLVGDTITYNTII------QGYFQAGRPDAAQEIFSRMDSRPNIR 323

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS+++ GLC   R E+A    + + +  +   + TYNI+I+G+CK G + +A  L   +
Sbjct: 324 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 383

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             KG  PD  S+ T+I GF  K + D++    +K
Sbjct: 384 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 417



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ Y+ +IN LC  +R   A+ +  KM+  G   ++VT + LI+   +    F A
Sbjct: 40  GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 99

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +E   +  ++ +Y+ +IDG C++G   +A +  D++   G+    VTYN L+ G
Sbjct: 100 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 159

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           LC  G   +A +L+  M  +   P+  +F  VI  F+
Sbjct: 160 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 196



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            + LF  M   GI  +L +YN +I+          A++++  + +  YE ++   S +I+
Sbjct: 29  VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLIN 88

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+  R  +A   + ++ E G  P VV YN +I+G CK G++ +A +L  +M+  G   
Sbjct: 89  GFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA 148

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D+ ++N+++ G         A+  ++
Sbjct: 149 DAVTYNSLVAGLCCSGRWSDAARLMR 174


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 120/210 (57%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L ++  K N   Y I ING CK + +  A++       KG+  D   YS++++GL    R
Sbjct: 334 LRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR 393

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A ++FD+M+  G T ++  ++ L+   ++      AM L   LER++ + NI  Y++
Sbjct: 394 IGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTV 453

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GLC+  R  EA    ++L   GL+P V TYN++I G C++G+  E   +L +M++ G
Sbjct: 454 VINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C  ++ ++N ++QGF   N+     SF+K+
Sbjct: 514 CPANNITYNVIMQGFFRSNKISEIVSFMKE 543



 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 109/191 (57%), Gaps = 9/191 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I I+ +CK   +D+AI       +K I  ++F Y+SLI+GLC   + ++   
Sbjct: 200 KPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKT 259

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +MV   I   + T++ LI D   K+G+   A  +++ +     E +I  YS ++DG 
Sbjct: 260 LLSEMVNLNINPNVHTFSILI-DGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGY 318

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G+ + AR+  + L +KG+ P + +Y+ILING CKK  + +A +L  ++ +KG  PD+
Sbjct: 319 CLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDT 378

Query: 181 TSFNTVIQGFL 191
            +++T++ G +
Sbjct: 379 VTYSTILHGLI 389



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 43/229 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +  I  N  C    ID A       +K GI  +V  +++L+ GL   N++ +AV LF K+
Sbjct: 99  ILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKL 158

Query: 67  VAQGI------------------------------------TAELVTYNPLIHDNWEKQG 90
           V + I                                      ++ TY+ +I    +   
Sbjct: 159 VREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDIN 218

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             +A+ LL  +++     NI  Y+ +IDGLC++G+WE+ +  L ++    + P V T++I
Sbjct: 219 LDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSI 278

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI+GLCK+G + +AD+++  M EKG  PD  +++ ++ G+ ++ + DRA
Sbjct: 279 LIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           DV  YS +I+ LC    L  A+ L ++M  + I   + TYN LI D   K G++  +  L
Sbjct: 202 DVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLI-DGLCKLGQWEKVKTL 260

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +       N+  +S++IDGLC+ G+ E+A + +  + EKG+ P ++TY+ +++G C 
Sbjct: 261 LSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCL 320

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G +  A ++   +++KG  P+  S++ +I G+  K    +A
Sbjct: 321 RGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKA 362



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 1/172 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI +   + + + N  C  +R+  A  +    +  GI   +VT+N L+   + +     A
Sbjct: 92  GIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDA 151

Query: 95  MALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           + L + L R+K  E N  +Y  V++GL + G  E+    L  + +    P V TY+I+I+
Sbjct: 152 VVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVID 211

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LCK   +  A  LL +MK+K   P+  ++N++I G     + ++  + L +
Sbjct: 212 ALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSE 263


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F+ +  +Y   I+G CKI  ++ A+       + G+  D   Y+SL+ GLC   R
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A  L   MV + I   ++T+  +I D + K+G+FS AM L + + R   + ++  Y+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVI-DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR +EA++ LD +  KG +P VVTYN LING CK   + E  KL  +M ++
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   D+ ++NT+IQG+      D A     +
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 374



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 16/214 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T +    +   Y   ING+C    +D A       + KG   DV  Y++LING C   
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM---ALLQTLERDKYELNIE 111
           R+ E  +LF +M  +G+  + +TYN +I      QG F A    A  +   R     NI 
Sbjct: 329 RVDEGTKLFREMAQRGLVGDTITYNTII------QGYFQAGRPDAAQEIFSRMDSRPNIR 382

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS+++ GLC   R E+A    + + +  +   + TYNI+I+G+CK G + +A  L   +
Sbjct: 383 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             KG  PD  S+ T+I GF  K + D++    +K
Sbjct: 443 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ Y+ +IN LC  +R   A+ +  KM+  G   ++VT + LI+   +    F A
Sbjct: 99  GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +E   +  ++ +Y+ +IDG C++G   +A +  D++   G+    VTYN L+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           LC  G   +A +L+  M  +   P+  +F  VI  F+
Sbjct: 219 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 255



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            + LF  M   GI  +L +YN +I+          A++++  + +  YE ++   S +I+
Sbjct: 88  VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLIN 147

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+  R  +A   + ++ E G  P VV YN +I+G CK G++ +A +L  +M+  G   
Sbjct: 148 GFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA 207

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
           D+ ++N+++ G         A+  ++
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMR 233


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           F+   QR    N H Y I I+G CKI+++D A+          I  DV  Y+SLI+GLC 
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  A++L D+M  +G+  + +TYN ++    +      A+ALL  ++ +  + +I  
Sbjct: 400 LGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICT 459

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++DGLC+ GR E+AR   + L  KG +  V  Y  +I G C  G+  E+  LL +M+
Sbjct: 460 YTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKME 519

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E GC P++ ++  +I     K+E D+A   L++
Sbjct: 520 ENGCIPNAVTYEIIICSLFDKDENDKAEKLLRE 552



 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+ MCK++ ++ A       + KGI  DV  Y++LI+G C   ++K+A +
Sbjct: 209 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD 268

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------AMALLQTLERDKYELN------ 109
           LF+KM+ + I   + T+N L+ D + K+ R        AM + Q ++ D +  N      
Sbjct: 269 LFNKMIFENINPNVYTFNILV-DGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 110 ------------------------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                                   I  YS++I G C++ + +EA     ++    ++P V
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDV 387

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN LI+GLCK G I  A KL+ +M ++G   D  ++N+++      ++ D+A + L K
Sbjct: 388 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 447



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 109/196 (55%), Gaps = 8/196 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +    N + + I ++G CK R +  A       +K+GI  DVF Y+SL++  C    + +
Sbjct: 276 ENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNK 335

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ +  +G+   + +Y+ +IH   + +    AM L + +  +    ++  Y+ +ID
Sbjct: 336 AKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLID 395

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC++G+   A K +D++ ++G+    +TYN +++ LCK   + +A  LL +MK++G  P
Sbjct: 396 GLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP 455

Query: 179 DSTSFNTVIQGFLVKN 194
           D  ++ T++ G L KN
Sbjct: 456 DICTYTTLVDG-LCKN 470



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 101/199 (50%), Gaps = 46/199 (23%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  ING+CK+ +  +A++       K +  +V +Y+++I+ +C    + EA 
Sbjct: 173 FHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L+ +MV++GI+ ++VTYN LI                                    G 
Sbjct: 233 DLYSEMVSKGISPDVVTYNALI-----------------------------------SGF 257

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG+ ++A    +++  + + P V T+NIL++G CK+  + EA  +L  M ++G  PD 
Sbjct: 258 CIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDV 317

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++N+++  + +  E ++A
Sbjct: 318 FTYNSLMDRYCLVKEVNKA 336



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   +V   ++LI GLC   ++ +A++  DK+VA G     V+Y  LI+   +    
Sbjct: 134 LKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQT 193

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ LL+ ++    + N+ +Y+ +ID +C+V    EA     ++  KG+ P VVTYN L
Sbjct: 194 SAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNAL 253

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I+G C  G + +A  L  +M  +   P+  +FN ++ GF  +     A + L   M
Sbjct: 254 ISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +F +  ++  L   N     V L  +M   GIT++LV  + LI+   +      + ++L 
Sbjct: 72  IFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLA 131

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + +  YE N+   + +I GLC  G+  +A +  D++   G     V+Y  LINGLCK G
Sbjct: 132 KILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVG 191

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGF----LVKNETDRASSFLKK 205
               A +LL ++  K   P+   +NT+I       LV    D  S  + K
Sbjct: 192 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 241


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 9/200 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +K +   Y I ING CK   ID A       I +G+  D   Y++LI+GLC   RL+EA 
Sbjct: 25  YKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQ 84

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +LF  M   G   +L  Y+ L+ D   KQG    A  L + ++    + ++ +Y++++D 
Sbjct: 85  DLFKNMHKNGNLPDLFAYSILL-DGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDA 143

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C+ G  ++AR+   +L  KGL P V  Y  +INGLCK+G++ EA +    M+E GC PD
Sbjct: 144 MCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 203

Query: 180 STSFNTVIQGFLVKNETDRA 199
             S+N +I+GFL   +  RA
Sbjct: 204 EFSYNVIIRGFLQHKDESRA 223



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 56/97 (57%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L   +    Y+ ++  Y+++I+G C+  R ++A++  +++  +GL P  VTYN LI+
Sbjct: 13  ARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIH 72

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLC+ G + EA  L   M + G  PD  +++ ++ G 
Sbjct: 73  GLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGL 109



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 42/176 (23%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   Y I ++G+CK   +  A +         +  D+ +Y+ L++ +C    LK+A ELF
Sbjct: 98  DLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELF 157

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            ++  +G+                                     N+++Y+ +I+GLC+ 
Sbjct: 158 SELFVKGLQP-----------------------------------NVQIYTTIINGLCKE 182

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           G  +EA +    + E G  P   +YN++I G  +      A  L+ +M+++G   D
Sbjct: 183 GLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIAD 238



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D +  KG  P V  YNILING CK   I +A +L  +M  +G  PD  ++NT+I
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 188 QGFLVKNETDRASSFLKKNM 207
            G L +    R +  L KNM
Sbjct: 72  HG-LCQLGRLREAQDLFKNM 90


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING CK + +D A+       +K +  D   YSSL++GLC   R+    +L 
Sbjct: 586 DVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLI 645

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +G  A+++TYN LI D   K G    A+AL   ++      N   +++++DGLC+
Sbjct: 646 DEMRDRGQPADVITYNSLI-DGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCK 704

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++    L  KG    V  YN++I G CK+G++ EA  +L +M+E GC P++ +
Sbjct: 705 GGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVT 764

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F+ +I     K+E D+A   L++
Sbjct: 765 FDIIINALFKKDENDKAEKLLRQ 787



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 44/231 (19%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------------------------- 33
           L  Q F+ N   Y   ING+CKI +   AIK                             
Sbjct: 403 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 462

Query: 34  -------------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
                        KGI  DV  YS+LI G C   +LKEA+ L ++MV + I  ++ TY  
Sbjct: 463 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTI 522

Query: 81  LIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D   K+G+   A ++L  + +   + ++  Y+ +++G   V   ++A+   + +S  
Sbjct: 523 LV-DALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLM 581

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G+ P V TY ILING CK  M+ EA  L  +M +K   PD+ ++++++ G 
Sbjct: 582 GVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGL 632



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A         KGI  DV  YS+LI G C   +LKEA+ 
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIG 503

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------AMALLQTLERDKYELN------ 109
           L ++MV + I  ++ TY  L+ D   K+G+        A+ L   ++ D +  N      
Sbjct: 504 LLNEMVLKTINPDVRTYTILV-DALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562

Query: 110 ------------------------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                                   +  Y+++I+G C+    +EA     ++ +K +VP  
Sbjct: 563 LLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDT 622

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY+ L++GLCK G I     L+ +M+++G   D  ++N++I G       D+A +   K
Sbjct: 623 VTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNK 682



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNR 55
           L  Q F+ N   Y   ING+C+I +  +AIK    +D       V +Y+++I+ LC +  
Sbjct: 89  LLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQL 148

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +M  +GI+A +VTY+ LI+          A+ LL  +       N+  Y++
Sbjct: 149 VSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNI 208

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D LC+ G+ +EA+  L  + +  +   V+TY+ L++G      + +A  +   M   G
Sbjct: 209 LVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 268

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  S+N +I GF      D+A +  K+
Sbjct: 269 VTPDVHSYNIMINGFCKIKRVDKALNLFKE 298



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 94/171 (54%), Gaps = 4/171 (2%)

Query: 24  KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K++E  S +    K  +  DVF Y++L+NG      +K+A  +F+ M   G+T ++ TY 
Sbjct: 532 KVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYT 591

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI+   + +    A+ L + + +     +   YS ++DGLC+ GR       +D++ ++
Sbjct: 592 ILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G    V+TYN LI+GLCK G + +A  L  +MK++G  P++ +F  ++ G 
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGL 702



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G   D    ++LI GLC   ++KEA+   DK++AQG     V+Y  LI+        
Sbjct: 55  LKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDT 114

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+  L+ ++    + N+E+Y+ +ID LC+     EA     +++ KG+   VVTY+ L
Sbjct: 115 RAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTL 174

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I G C  G + EA  LL  M  K   P+  ++N ++     + +   A S L
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL 226



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G        ++LI GLC   ++K+A+   DK++AQ
Sbjct: 347 ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 406

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V+Y  LI+   +      A+ LL+ ++    + N+E+YS +ID LC+     EA
Sbjct: 407 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 466

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTY+ LI G C  G + EA  LL +M  K   PD  ++  ++  
Sbjct: 467 YGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDA 526

Query: 190 FLVKNETDRASSFL 203
              + +   A S L
Sbjct: 527 LGKEGKVKEAKSVL 540



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 41/234 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------------------------------------- 33
           + H Y I ING CKI+ +D A+                                      
Sbjct: 272 DVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSH 331

Query: 34  ----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
               KGI  D+F  + LIN  C   ++     +  K++ +G     VT N LI     K 
Sbjct: 332 RLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKG 391

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A+     L    ++LN   Y+ +I+G+C++G    A K L ++  +   P V  Y+
Sbjct: 392 QVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYS 451

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +I+ LCK  ++ EA  L  +M  KG   D  +++T+I GF +  +   A   L
Sbjct: 452 TIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLL 505



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +G  L+   Y++LING+C     + A++L  K+  +     +  Y+ +I    + 
Sbjct: 401 DKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKY 460

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           Q    A  L   +       ++  YS +I G C VG+ +EA   L+++  K + P V TY
Sbjct: 461 QLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTY 520

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            IL++ L K+G + EA  +L  M +    PD  ++NT++ G+L+  E  +A
Sbjct: 521 TILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKA 571



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 78/274 (28%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A         KGI  +V  YS+LI G C   +LKEA+ 
Sbjct: 130 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALG 189

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER--------------DKY 106
           L + MV + I   + TYN L+ D   K+G+   A ++L  + +              D Y
Sbjct: 190 LLNVMVLKTINPNVCTYNILV-DALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248

Query: 107 ELNIEV---------------------YSLVIDGLCRVGRWEEA---------------- 129
            L  EV                     Y+++I+G C++ R ++A                
Sbjct: 249 FLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPII 308

Query: 130 --RKKLDQLSE----------------KGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
              K LD  ++                KG+ P + T NILIN  C  G I     +L ++
Sbjct: 309 QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKI 368

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++G  P + + NT+I+G  +K +  +A  F  K
Sbjct: 369 LKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDK 402



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 17/202 (8%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           G F VY ++     K + + +A+   G+  DV  Y+ +ING C   R+ +A+ LF +M+ 
Sbjct: 247 GYFLVYEVK-----KAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMIL 301

Query: 69  QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                 ++ +N ++ D++ K   +S A++L   LE    + ++   +++I+  C +G+  
Sbjct: 302 SRF-PPIIQFNKIL-DSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQIT 359

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DKLLVQMKEKGCFPDSTSF 183
                L ++ ++G  P  VT N LI GLC KG + +A    DKLL Q    G   +  S+
Sbjct: 360 FGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ----GFQLNQVSY 415

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G     +T  A   L+K
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRK 437



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 42/168 (25%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   +D AI        +GI  + F ++ L++GLC   RLK+A E+F  ++
Sbjct: 660 YNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLL 719

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   ++  YN +I+                                   G C+ G  E
Sbjct: 720 TKGYHLDVYIYNVMIY-----------------------------------GHCKQGLLE 744

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EA   L ++ E G +P  VT++I+IN L KK    +A+KLL QM  +G
Sbjct: 745 EALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DKLLVQMKEKGCFPDSTSFNTVIQ 188
           L ++ ++G  P  VT N LI GLC KG + EA    DKLL Q    G   +  S+ T+I 
Sbjct: 51  LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQ----GFQLNQVSYATLIN 106

Query: 189 GFLVKNETDRASSFLKK 205
           G     +T  A  FL+K
Sbjct: 107 GVCRIGDTRAAIKFLRK 123


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y I ING CKI+  D A+        + +  DV  Y+SLINGLC   ++  A++L
Sbjct: 203 ANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKL 262

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            D+M  +G   +++TY+ L+    +      A+ALL+ L+      N+  Y+++IDGLC+
Sbjct: 263 VDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCK 322

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR E+A    + L  KG    V TY ++I+G C KG+  EA  LL +MK+  CFP++ +
Sbjct: 323 GGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALT 382

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I+     +E D+A + L++
Sbjct: 383 YEIIIRSLFDNDENDKAENLLRE 405



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 91/159 (57%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+GI  +   YSSL++G C  N +  A  +F  M  +G+TA + +YN +I+   + +  
Sbjct: 162 MKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMT 221

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L + +   K   ++  Y+ +I+GLC+ G+   A K +D++ ++G  P ++TY+ L
Sbjct: 222 DEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSL 281

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++ LCK   + +A  LL  +K++G  P+  ++  +I G 
Sbjct: 282 LDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGL 320



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 42/169 (24%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++ +CK  ++D AI        +GI  +++ Y+ LI+GLC   RL++A  +F+ +
Sbjct: 277 TYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL 336

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G    + TY  +IH                                   G C  G +
Sbjct: 337 LVKGYNITVNTYTVMIH-----------------------------------GFCNKGLF 361

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +EA   L ++ +    P  +TY I+I  L       +A+ LL +M  +G
Sbjct: 362 DEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAENLLREMITRG 410



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA+  L  + ++G+ P  VTY+ L++G C    +  A  +   M  +G   +  S+
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSY 208

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I GF     TD A +  ++
Sbjct: 209 NIMINGFCKIKMTDEAMNLFEE 230



 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L +Q  + N + Y I I+G+CK   ++ A       + KG  + V  Y+ +I+G C   
Sbjct: 300 NLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKG 359

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
              EA+ L  KM         +TY  +I   ++      A  LL+ +
Sbjct: 360 LFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAENLLREM 406


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 13/191 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I IN  CK + +D+ ++       KG+  D   Y++L+ G C   +L  A ELF
Sbjct: 383 NIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++G+   +VTY  L+    DN E Q    A+ + + +++ +  L I +Y+++I G+
Sbjct: 443 QEMVSRGVPPSVVTYGILLDGLCDNGELQ---KALEIFEKMQKSRMILGIGIYNIIIHGM 499

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      LS KG+ P V+TYN++I GLCKKG + EAD L  +MKE GC P  
Sbjct: 500 CNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSD 559

Query: 181 TSFNTVIQGFL 191
            ++N +I+  L
Sbjct: 560 CTYNILIRAHL 570



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 112/209 (53%), Gaps = 9/209 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E +++ N       ING+C   ++ E    ID  +K G   +   Y  ++N +C    
Sbjct: 165 MVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGN 224

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A++LF KM  + I A +V Y+ +I D+  K G    A++L   +E    + ++  YS
Sbjct: 225 TALALDLFRKMEERSIKASVVQYSIVI-DSLCKDGNLDDALSLFNEMEMKGIKADVVAYS 283

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC  GRW++  K L ++  + ++P VVT++ LI+   K+G ++EA +L  +M  +
Sbjct: 284 SIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR 343

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+ +++++I GF  +N    A+  L
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQML 372



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y I I+ +CK   +D A+        KGI  DV  YSS+I GLC    
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGR 294

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TF+          +L EA EL+++MVA+GI  + +TY+ 
Sbjct: 295 WDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           LI D + K+ R   A  +L  +     E NI  YS++I+  C+  R +   +   ++S K
Sbjct: 355 LI-DGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSK 413

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTYN L+ G C+ G +  A +L  +M  +G  P   ++  ++ G     E  +A
Sbjct: 414 GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKA 473

Query: 200 SSFLKK 205
               +K
Sbjct: 474 LEIFEK 479



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +GI  D   YSSLI+G C  NRL EA ++ D MV++G    +VTY+ LI+   + +  
Sbjct: 341 VARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            + M L   +       +   Y+ ++ G C+ G+   A++   ++  +G+ P VVTY IL
Sbjct: 401 DNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGIL 460

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++GLC  G + +A ++  +M++         +N +I G    ++ D A S  
Sbjct: 461 LDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLF 512



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CK   +  A       + KG   ++  YS LIN  C   R+   + LF ++ 
Sbjct: 352 YSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+ A+ VTYN L+    +      A  L Q +       ++  Y +++DGLC  G  +
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +  +++ +  ++ G+  YNI+I+G+C    + +A  L   +  KG  PD  ++N +I
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMI 531

Query: 188 QGFLVKNETDRASSFLKK 205
            G   K     A    +K
Sbjct: 532 GGLCKKGSLSEADMLFRK 549



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%)

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M   GI   + T N +I+    K+    A +++    +  +E N   +S +I+G C  G
Sbjct: 94  EMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEG 153

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  EA   +D++ E    P VVT N LINGLC KG + EA  L+ +M + GC  +  ++ 
Sbjct: 154 RVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYG 213

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            V+        T  A    +K
Sbjct: 214 PVLNRMCKSGNTALALDLFRK 234


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 113/195 (57%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING CK R +D A         K +  D   YS+L+ GLC F R KEA+ +F +
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKE 428

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M + G+   LVTY+ L+ D + K G    A+ LL++++  K E NI  ++++I+G+   G
Sbjct: 429 MCSYGLLPNLVTYSILL-DGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAG 487

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + E A++   +L   G+ P + TY ++I GL K+G+  EA  L  +M++ G  P+S S+N
Sbjct: 488 KLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYN 547

Query: 185 TVIQGFLVKNETDRA 199
            +IQGFL   ++  A
Sbjct: 548 VMIQGFLQNQDSSTA 562



 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK R ++ A++       +GI  +VF Y+ +++G C   +L EA  LF +M
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V + +  + VT   L+ D   K+G  S A  + +T+     E NI  Y+ ++DG C    
Sbjct: 290 VGRDVMPDTVTLTILV-DGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRL 348

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA+K  + +  +G  PGV +YNILING CK   + EA  LL +M  K   PD+ +++T
Sbjct: 349 MNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 186 VIQGF 190
           ++QG 
Sbjct: 409 LMQGL 413



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   + IN +C++  +D A+       K GI      +++LINGLC   ++KEAVELF
Sbjct: 122 NVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELF 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++MV +G    +++YN +I+   +      A+ + + +E++  + ++  Y+ +ID LC+ 
Sbjct: 182 NEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKD 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               +A + L ++ ++G+ P V TYN +++G C  G + EA +L  +M  +   PD+ + 
Sbjct: 242 RLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTL 301

Query: 184 NTVIQGF 190
             ++ G 
Sbjct: 302 TILVDGL 308



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK   +  A        +KG+  ++  Y++L++G C    + EA ++F+ M+ Q
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQ 362

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    + +YN LI+   + +    A +LL  +       +   YS ++ GLC+ GR +EA
Sbjct: 363 GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEA 422

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++   GL+P +VTY+IL++G CK G + EA KLL  M+EK   P+      +I+G
Sbjct: 423 LNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEG 482

Query: 190 FLVKNETDRASSFLKK 205
             +  + + A     K
Sbjct: 483 MFIAGKLEVAKELFSK 498



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +V+  + LIN LC  N +  AV +  KM   GI     T+N LI+    +     A
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   + R  +E N+  Y+ +I+GLC+ G    A     ++ + G  P VVTYN +I+ 
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK  ++ +A + L +M ++G  P+  ++N ++ GF +  + + A+   K+
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKE 288



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+  F +MV       +  +   +  ++ K+ ++S +  L   + D + +   VYSL
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFL-GSFAKKKQYSTVVSLCN-QMDLFGVTHNVYSL 126

Query: 116 --VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I+ LCR+   + A   L ++ + G+ P   T+N LINGLC +G I EA +L  +M  
Sbjct: 127 NVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVR 186

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P+  S+NT+I G      T  A    KK
Sbjct: 187 RGHEPNVISYNTIINGLCKTGNTSMAVDVFKK 218



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G CK   +D A+K       K +  ++  ++ LI G+    +L+ A ELF
Sbjct: 437 NLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELF 496

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+ A GI   + TY  +I    ++     A  L + +E D +  N   Y+++I G  + 
Sbjct: 497 SKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 556

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                A + +D++  K     + T+ +L++
Sbjct: 557 QDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 115/203 (56%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING CK + +D A+       +K +   +  YSSLI+GLC   R+    +L 
Sbjct: 338 DVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLI 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +GI A ++TYN LI D   K G    A+AL   ++          +++++DGLC+
Sbjct: 398 DEMRDRGIPANVITYNSLI-DGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++    L  KG    V  YN++ING CK+G++ EA  +L +M+E GC P++ +
Sbjct: 457 GGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVT 516

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F+ +I     K+E D+A   L++
Sbjct: 517 FDIIINALFKKDENDKAEKLLRQ 539



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A         KGI  DV  Y++LI G C  ++LKEA+ 
Sbjct: 196 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIG 255

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------AMALLQTLERDK---------- 105
           L ++MV + I   + TYN L+ D   K+G+        A+ L   ++ D           
Sbjct: 256 LLNEMVLKTINPNVYTYNILV-DALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314

Query: 106 ---YEL-----------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
              YEL                 ++  Y+++I+G C+    +EA     ++ +K +VPG+
Sbjct: 315 FLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY+ LI+GLCK G I     L+ +M+++G   +  ++N++I G       DRA +   K
Sbjct: 375 VTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNK 434



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++ +CK  ++  A       +K  +  DV  YS+L++G      LK+A  +F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M   G+T ++ +Y  LI+   + +    A+ L + + +      I  YS +IDGLC+ 
Sbjct: 328 NAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR       +D++ ++G+   V+TYN LI+GLCK G +  A  L  +MK++G  P S +F
Sbjct: 388 GRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTF 447

Query: 184 NTVIQGF 190
             ++ G 
Sbjct: 448 TILLDGL 454



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 11/204 (5%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CKI +   AIK    +D       V +Y+++I+ LC +  + EA  LF +M 
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 226

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A+GI+A++VTY  LI+          A+ LL  +       N+  Y++++D LC+ G+ +
Sbjct: 227 AKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVK 286

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+  L  + +  + P V+TY+ L++G      + +A  +   M   G  PD  S+  +I
Sbjct: 287 EAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILI 346

Query: 188 QGFLVKNETDRASSFLK----KNM 207
            GF      D A +  K    KNM
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNM 370



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I       D    +GI  +V  Y+SLI+GLC    L  A+ LF+KM 
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMK 436

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI     T+  L+ D   K GR   A    Q L    Y L++  Y+++I+G C+ G  
Sbjct: 437 DQGIRPCSFTFTILL-DGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLL 495

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EEA   L ++ E G VP  VT++I+IN L KK    +A+KLL QM  +G
Sbjct: 496 EEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G       +++LI GLC   ++ +A+   DK++AQ
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ 158

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI  + V+Y  LI+   +      A+ L++ ++    + N+E+Y+ +ID LC+     EA
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 218

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTY  LI G C    + EA  LL +M  K   P+  ++N ++  
Sbjct: 219 YGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 190 FLVKNETDRASSFL 203
              + +   A + L
Sbjct: 279 LCKEGKVKEAKNVL 292



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++   KI+   +A+        KGI  D+   + LIN  C   ++     +  K++ +G 
Sbjct: 66  LDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +T+  LI     K     A+     L     + +   Y  +I+G+C++G    A K
Sbjct: 126 QPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIK 185

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + ++  +   P V  YN +I+ LCK  ++ EA  L  +M  KG   D  ++ T+I GF 
Sbjct: 186 LVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFC 245

Query: 192 VKNETDRASSFL 203
           + ++   A   L
Sbjct: 246 IASKLKEAIGLL 257



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           +   + +AV  F++M+    T  ++ +N ++ D++ K   +S A++L   LE    + ++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKIL-DSFAKIKHYSTAVSLSHRLELKGIQPDL 94

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++I+  C +G+       L ++ ++G  P  +T+  LI GLC KG + +A    DK
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDK 154

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   D  S+ T+I G     +T  A   ++K
Sbjct: 155 LLAQ----GIKFDQVSYGTLINGVCKIGDTRGAIKLVRK 189



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 25  IREIDSAIK---KGICL----DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           I+ +D A+    + +C+     +  ++ +++          AV L  ++  +GI  +L+T
Sbjct: 37  IQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 78  YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            N LI + +   G+ +   ++L  + +  Y+ +   ++ +I GLC  G+  +A    D+L
Sbjct: 97  LNILI-NCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKL 155

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +G+    V+Y  LING+CK G    A KL+ ++  +   P+   +NT+I   
Sbjct: 156 LAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 209


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I IN  CK + +D  ++       KG+  +   Y++L+ G C   +L  A ELF +M
Sbjct: 416 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 475

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G+   +VTY  L+    +      A+ + + +++ +  L I +Y+++I G+C   + 
Sbjct: 476 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 535

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A      LS+KG+ P VVTYN++I GLCKKG + EAD L  +MKE GC PD  ++N +
Sbjct: 536 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 595

Query: 187 IQGFL 191
           I+  L
Sbjct: 596 IRAHL 600



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K +   Y I I+ +CK    D A+        KGI  DV  YSSLI GLC   +
Sbjct: 265 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 324

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +  ++  +M+ + I  ++VT++ LI D + K+G+   A  L   +       +   Y+
Sbjct: 325 WDDGAKMLREMIGRNIIPDVVTFSALI-DVFVKEGKLLEAKELYNEMITRGIAPDTITYN 383

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+     EA +  D +  KG  P +VTY+ILIN  CK   + +  +L  ++  K
Sbjct: 384 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 443

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P++ ++NT++ GF    + + A    ++
Sbjct: 444 GLIPNTITYNTLVLGFCQSGKLNAAKELFQE 474



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E + + +       ING+C   ++ E    ID  ++ G   D   Y  ++N LC    
Sbjct: 195 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 254

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A++LF KM  + I A +V Y+ +I D+  K G F  A++L   +E    + ++  YS
Sbjct: 255 SALALDLFRKMEERNIKASVVQYSIVI-DSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 313

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC  G+W++  K L ++  + ++P VVT++ LI+   K+G ++EA +L  +M  +
Sbjct: 314 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 373

Query: 175 GCFPDSTSFNTVIQGFLVKN 194
           G  PD+ ++N++I GF  +N
Sbjct: 374 GIAPDTITYNSLIDGFCKEN 393



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   +NG C   ++ E    +D  ++     D+   S+LINGLC   R+ EA+ L D+M
Sbjct: 171 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 230

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G   + VTY P+++   +      A+ L + +E    + ++  YS+VID LC+ G +
Sbjct: 231 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 290

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A    +++  KG+   VVTY+ LI GLC  G   +  K+L +M  +   PD  +F+ +
Sbjct: 291 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 350

Query: 187 IQGFL 191
           I  F+
Sbjct: 351 IDVFV 355



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I +GI  D   Y+SLI+G C  N L EA ++FD MV++G   ++VTY+ LI+   + +  
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 430

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              M L + +       N   Y+ ++ G C+ G+   A++   ++  +G+ P VVTY IL
Sbjct: 431 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 490

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++GLC  G + +A ++  +M++         +N +I G    ++ D A S  
Sbjct: 491 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 542



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   + E     D  + KG   D+  YS LIN  C   R+ + + LF ++
Sbjct: 381 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+    +TYN L+    +     +A  L Q +       ++  Y +++DGLC  G  
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 500

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +  +++ +  +  G+  YNI+I+G+C    + +A  L   + +KG  PD  ++N +
Sbjct: 501 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 560

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 561 IGGLCKKGSLSEADMLFRK 579



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           G CK  E++     GI  D++  + +IN  C   +L  A  +  +    G   + +T++ 
Sbjct: 120 GFCKGMELN-----GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 174

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L++  +  +GR S A+AL+  +   K   ++   S +I+GLC  GR  EA   +D++ E 
Sbjct: 175 LVN-GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEY 233

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P  VTY  ++N LCK G    A  L  +M+E+        ++ VI         D A
Sbjct: 234 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 293

Query: 200 SSFLKK 205
            S   +
Sbjct: 294 LSLFNE 299



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + + R      +Y I I+GMC   ++D A         KG+  DV  Y+ +I GLC    
Sbjct: 510 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 569

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA  LF KM   G T +  TYN LI  +    G  S++ L++ ++   +  +     +
Sbjct: 570 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 629

Query: 116 VIDGL 120
           VID L
Sbjct: 630 VIDML 634


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G CK   ID A         K +  D   YS+L+ G C   R ++A +L ++M 
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMR 319

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G+  +L+TY+ ++ D   KQG    A  LL+ ++  K E NI +Y+++I G+C  G+ 
Sbjct: 320 SYGLLPDLMTYS-IVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR+    L  KG+ P VVTY ++I+GL K G+  EA +L   M   GC P+S ++N +
Sbjct: 379 EAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVI 438

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQGFL   +T  A   +++
Sbjct: 439 IQGFLRNGDTSNAGRLIEE 457



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  K N  VY   I+ +CK + I  A       + +GI  +V  YSS+++G C   R
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             EA  LF +MV + +  + VT+N L+ D   K+G    A  + +T+     E N+  Y+
Sbjct: 168 SNEATSLFKQMVERNVMPDTVTFNILV-DGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C   + +EA+K  + +  KG  P V +YNILI G CK G I EA  LL +M  K
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK 286

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ +++T+++GF        A   L++
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE 317



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 94/175 (53%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++  D  +K G   DV  YS++INGLC       A++L  KM  +G    +V Y+ +I  
Sbjct: 67  VKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDS 126

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             + +    AM  L  +       N+  YS ++ G C +GR  EA     Q+ E+ ++P 
Sbjct: 127 LCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPD 186

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            VT+NIL++GL K+GMI+EA  +   M EKG  P+  ++N ++ G+  +++ D A
Sbjct: 187 TVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 92/158 (58%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+  +   +S+L+NGL +  ++ +AV+LFD+MV  G   +++TY+ +I+   +     
Sbjct: 40  KLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTT 99

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ LL+ +E    + N+ VYS +ID LC+     EA + L ++  +G+ P VVTY+ ++
Sbjct: 100 MAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSIL 159

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +G C  G   EA  L  QM E+   PD+ +FN ++ G 
Sbjct: 160 HGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGL 197



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 99/162 (61%), Gaps = 2/162 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           ++ I+KG+  +V  Y++L++G C+ +++ EA +LF+ MV +G    + +YN LI  +  K
Sbjct: 211 ETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC-K 269

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A  LL  +       +   YS ++ G C+ GR ++A+K L+++   GL+P ++T
Sbjct: 270 SGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMT 329

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           Y+I+++GLCK+G + EA +LL  M+E    P+   +  +IQG
Sbjct: 330 YSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQG 371



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 39  DVFVYSSLINGLCTFNR--LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           DV+  + LIN  C  N      A  +   M   G+    VT++ L++    K     A+ 
Sbjct: 9   DVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVK 68

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   + +  YE ++  YS +I+GLC++G    A + L ++ EKG  P VV Y+ +I+ LC
Sbjct: 69  LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC 128

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  +I EA + L +M  +G  P+  ++++++ GF     ++ A+S  K+
Sbjct: 129 KDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQ 177



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E + + N  +Y I I GMC   ++++A         KGI  DV  Y+ +I+GL     
Sbjct: 353 MQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGL 412

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH 83
             EA ELF  M   G      TYN +I 
Sbjct: 413 SNEACELFRDMAVHGCLPNSCTYNVIIQ 440


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI++ D A+       +K I  DV  YSSLI+GL    R+  A++L D+M 
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   + TYN ++    +      A+ALL  L+    + N+  YS++I GLC+ G+ E
Sbjct: 428 DRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLE 487

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +ARK  + L  KG    V TY I+I G C +G+  EA  LL +M++ GC PD+ ++  +I
Sbjct: 488 DARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547

Query: 188 QGFLVKNETDRASSFLKK 205
                K+E D A   L++
Sbjct: 548 LSLFKKDENDMAEKLLRE 565



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 47/247 (19%)

Query: 6   QRFKGNFH-----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           QR  GN       +Y   I+ MCK++ ++ A       I KGI  DV  YS+LI+G C  
Sbjct: 214 QRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCIL 273

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQGRF----------------- 92
            +L +A++LF+KM+ + I  ++ T+N L++    D   K+G+                  
Sbjct: 274 GKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 93  --------------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                          A ++  T+ +     +I+ YS++I+G C++ +++EA     ++  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           K ++P VVTY+ LI+GL K G I  A +L+ QM ++G  P   ++N+++      ++ D+
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDK 453

Query: 199 ASSFLKK 205
           A + L K
Sbjct: 454 AIALLTK 460



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 106/191 (55%), Gaps = 7/191 (3%)

Query: 6   QRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  K + + + I +N  CK   ++E     D  +K+GI  +   Y+SL++G C    + +
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNK 348

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M   G+  ++ +Y+ +I+   + +    AM L + + R     ++  YS +ID
Sbjct: 349 AKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLID 408

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR   A + +DQ+ ++G+ P + TYN +++ LCK   + +A  LL ++K+KG  P
Sbjct: 409 GLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQP 468

Query: 179 DSTSFNTVIQG 189
           +  +++ +I+G
Sbjct: 469 NMYTYSILIKG 479



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C++  I  A       +K G   D   +++LI GLC   ++++A    DK+VA 
Sbjct: 125 ILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVAL 184

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   + ++Y  LIH   +     +A+ LLQ ++ +  + N+ +Y+ +ID +C+V    EA
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++  KG+ P VVTY+ LI+G C  G + +A  L  +M  +   PD  +FN ++  
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 190 F 190
           F
Sbjct: 305 F 305



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YSS      + N + +AV LF++++ +  T     +N ++    + +   + + L Q +E
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               + N+   +++I+  C++G    A     ++ + G VP  +T+  LI GLC KG I 
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQ 172

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +A     ++   G   D  S+ T+I G     ET  A   L++
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQR 215



 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L ++  + N + Y I I G+C+  +++ A K       KG  L+V  Y+ +I G C    
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGL 520

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA+ L  KM   G   +  TY  +I   ++K     A  LL+ +
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I IN  CK + +D  ++       KG+  +   Y++L+ G C   +L  A ELF +M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G+   +VTY  L+    +      A+ + + +++ +  L I +Y+++I G+C   + 
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A      LS+KG+ P VVTYN++I GLCKKG + EAD L  +MKE GC PD  ++N +
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566

Query: 187 IQGFL 191
           I+  L
Sbjct: 567 IRAHL 571



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K +   Y I I+ +CK    D A+        KGI  DV  YSSLI GLC   +
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +  ++  +M+ + I  ++VT++ LI D + K+G+   A  L   +       +   Y+
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALI-DVFVKEGKLLEAKELYNEMITRGIAPDTITYN 354

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+     EA +  D +  KG  P +VTY+ILIN  CK   + +  +L  ++  K
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P++ ++NT++ GF    + + A    ++
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E + + +       ING+C   ++ E    ID  ++ G   D   Y  ++N LC    
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A++LF KM  + I A +V Y+ +I D+  K G F  A++L   +E    + ++  YS
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVI-DSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 284

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC  G+W++  K L ++  + ++P VVT++ LI+   K+G ++EA +L  +M  +
Sbjct: 285 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 344

Query: 175 GCFPDSTSFNTVIQGFLVKN 194
           G  PD+ ++N++I GF  +N
Sbjct: 345 GIAPDTITYNSLIDGFCKEN 364



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   +NG C   ++ E    +D  ++     D+   S+LINGLC   R+ EA+ L D+M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G   + VTY P+++   +      A+ L + +E    + ++  YS+VID LC+ G +
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 261

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A    +++  KG+   VVTY+ LI GLC  G   +  K+L +M  +   PD  +F+ +
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321

Query: 187 IQGFL 191
           I  F+
Sbjct: 322 IDVFV 326



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I +GI  D   Y+SLI+G C  N L EA ++FD MV++G   ++VTY+ LI+   + +  
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              M L + +       N   Y+ ++ G C+ G+   A++   ++  +G+ P VVTY IL
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++GLC  G + +A ++  +M++         +N +I G    ++ D A S  
Sbjct: 462 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   + E     D  + KG   D+  YS LIN  C   R+ + + LF ++
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+    +TYN L+    +     +A  L Q +       ++  Y +++DGLC  G  
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +  +++ +  +  G+  YNI+I+G+C    + +A  L   + +KG  PD  ++N +
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 532 IGGLCKKGSLSEADMLFRK 550



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   + G C+  ++++A       + +G+   V  Y  L++GLC    L +A+E+F
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM    +T  +  YN +IH          A +L  +L     + ++  Y+++I GLC+ 
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA     ++ E G  P   TYNILI        ++ + +L+ +MK  G   DS++ 
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTI 598

Query: 184 NTVIQ 188
             VI 
Sbjct: 599 KMVID 603



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           G CK  E++     GI  D++  + +IN  C   +L  A  +  +    G   + +T++ 
Sbjct: 91  GFCKGMELN-----GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 145

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L++  +  +GR S A+AL+  +   K   ++   S +I+GLC  GR  EA   +D++ E 
Sbjct: 146 LVN-GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEY 204

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P  VTY  ++N LCK G    A  L  +M+E+        ++ VI         D A
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264

Query: 200 SSFLKK 205
            S   +
Sbjct: 265 LSLFNE 270



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 53  FNRLKEAVELFDK----------MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           FNRL  AV    +          M   GI  ++ T   +I+    K+    A ++L    
Sbjct: 73  FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +   +S +++G C  GR  EA   +D++ E    P +VT + LINGLC KG + 
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQ 188
           EA  L+ +M E G  PD  ++  V+ 
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLN 218



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + + R      +Y I I+GMC   ++D A         KG+  DV  Y+ +I GLC    
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA  LF KM   G T +  TYN LI  +    G  S++ L++ ++   +  +     +
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600

Query: 116 VIDGL 120
           VID L
Sbjct: 601 VIDML 605


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++    N + Y I I+ +CK + +D A       + K +  +   YSSLI+G C   R
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A++L  +M  +G  A++VTY  L+    + Q    A AL   ++    + N   Y+ 
Sbjct: 341 ITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTA 400

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+ GR + A+K    L  KG    V TYN++I+GLCK+GM+ EA  +  +M+E G
Sbjct: 401 LIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD+ +F  +I+    K++ D+A   L +
Sbjct: 461 CIPDAVTFEIIIRSLFEKDQNDKAEKLLHE 490



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 7/207 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           Q F+ +   Y   +NG+CKI E  SA+K       +    +V +Y+++I+GLC    + E
Sbjct: 109 QGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +L+ +M A+GI   ++TY+ LI+          A  LL  +       N+  Y++++D
Sbjct: 169 AYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMD 228

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ G+ +EA+  L  ++++G+ P VV+YN L++G C  G +  A ++   M +KG  P
Sbjct: 229 ALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNP 288

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  S+N +I         D A + L++
Sbjct: 289 NVYSYNIMIDRLCKSKRVDEAMNLLRE 315



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + ++  + N  +Y   I+G+CK + ++ A         +GI  +V  YS+LI G C   +
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQ 200

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           L EA  L ++M+ + I   + TY  L+ D   K+G+   A  LL  + ++  + N+  Y+
Sbjct: 201 LMEAFGLLNEMILKNINPNVYTYTILM-DALCKEGKVKEAKNLLAVMTKEGVKPNVVSYN 259

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C +G  + A++    + +KG+ P V +YNI+I+ LCK   + EA  LL ++  K
Sbjct: 260 TLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHK 319

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P++ +++++I GF        A   LK+
Sbjct: 320 NMVPNTVTYSSLIDGFCKLGRITSALDLLKE 350



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++ +CK  ++  A        K+G+  +V  Y++L++G C    ++ A ++F
Sbjct: 219 NVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMF 278

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             MV +G+   + +YN +I D   K  R   AM LL+ +       N   YS +IDG C+
Sbjct: 279 HTMVQKGVNPNVYSYNIMI-DRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +GR   A   L ++  +G    VVTY  L++ LCK   + +A  L ++MKE+G  P+  +
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 183 FNTVIQGF 190
           +  +I G 
Sbjct: 398 YTALIDGL 405



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C   ++  A       I K I  +V+ Y+ L++ LC   ++KEA  L 
Sbjct: 184 NVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLL 243

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M  +G+   +V+YN L+ D +   G   +A  +  T+ +     N+  Y+++ID LC+
Sbjct: 244 AVMTKEGVKPNVVSYNTLM-DGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCK 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R +EA   L ++  K +VP  VTY+ LI+G CK G I  A  LL +M  +G   D  +
Sbjct: 303 SKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVT 362

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + +++         D+A++   K
Sbjct: 363 YTSLLDALCKNQNLDKATALFMK 385



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK+  I SA+        +G   DV  Y+SL++ LC    L +A  LF
Sbjct: 324 NTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALF 383

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM  +GI     TY  LI D   K GR  +A  L Q L      +N+  Y+++I GLC+
Sbjct: 384 MKMKERGIQPNKYTYTALI-DGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCK 442

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  +EA     ++ E G +P  VT+ I+I  L +K    +A+KLL +M  K    D   
Sbjct: 443 EGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAK----DLLR 498

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F     G    NE D+A   L +
Sbjct: 499 FRD-FHGERSPNENDKAEKLLHE 520



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 17/197 (8%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +  + K++   +AI        KGI  D+F  + LIN  C   ++  +  +  K++  G 
Sbjct: 17  VGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGY 76

Query: 72  TAELVTYNPL-----IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
               +T N L     +    +K   F    + Q  + D+       Y+ +++GLC++G  
Sbjct: 77  QPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVS-----YATLLNGLCKIGET 131

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A K L  + ++   P VV YN +I+GLCK  ++ EA  L  +M  +G FP+  +++T+
Sbjct: 132 RSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTL 191

Query: 187 IQGFLVKNETDRASSFL 203
           I GF +  +   A   L
Sbjct: 192 IYGFCLAGQLMEAFGLL 208



 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L ++  +  A     Q+  KG+ P + T NILIN  C  G +  +  +L ++ 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  P++ + NT+++G  +K E  ++  F  K
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDK 105


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 123/210 (58%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +   + + + Y   I G+C        +  +D  +++G   DV  Y+ L+   C  + 
Sbjct: 147 VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSG 206

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            K+A++L D+M A+G   +++TYN ++ +   ++GR   A+  L++L     E N   Y+
Sbjct: 207 YKQAMKLLDEMRAKGCAPDIITYN-VVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYN 265

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +V+ GLC   RWE+A K + ++S+KG  P VVT+N+LI+ LC++G++  A ++L Q+ + 
Sbjct: 266 IVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKY 325

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GC P+S S+N ++  F  + + DRA +F++
Sbjct: 326 GCTPNSLSYNPILHAFCKQKKMDRAMAFVE 355



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D AI+        G   +   Y+ ++ GLCT
Sbjct: 214 LDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCT 273

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A +L  +M  +G    +VT+N LI     +     AM +L  + +     N   
Sbjct: 274 AERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLS 333

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + + A   ++ +  +G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 334 YNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T  A   L +
Sbjct: 394 DKGCTPVLISYNTVIDGLTKAGKTKEALELLNE 426



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       + +G   D+  Y++L+  LC    +  AVEL 
Sbjct: 330 NSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELL 389

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G T  L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 390 HQLKDKGCTPVLISYNTVI-DGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCR 448

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R EEA +   ++ + G+ P  V YN ++ GLCK+     A  L + M   GC P+ ++
Sbjct: 449 EDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNEST 508

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I+G   +     A   L
Sbjct: 509 YTILIEGLTYEGLVKEARELL 529



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
            L     + N   Y I + G+C     + A K       KG   +V  ++ LI+ LC   
Sbjct: 251 SLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRG 310

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A+E+ D++   G T   ++YNP++H   +++    AMA ++ +       +I  Y+
Sbjct: 311 LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYN 370

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++  LCR G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  K
Sbjct: 371 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK 430

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  +++T+  G   ++  + A
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEA 455



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+ K  +   A       + KG+  D+  YS++ +GLC  +R++EA+  F K+ 
Sbjct: 404 YNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQ 463

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI    V YN ++    +++   +A+ L   +  +    N   Y+++I+GL   G  +
Sbjct: 464 DMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVK 523

Query: 128 EARKKLDQLSEKGLV 142
           EAR+ L +L  +G+V
Sbjct: 524 EARELLGELCSRGVV 538



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 43/194 (22%)

Query: 47  INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY 106
           + GL     L+EA+ L + M     +A       LI           A  +L   E D  
Sbjct: 66  LRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAACEPD-- 123

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG------- 159
              +  Y+ ++ G C  G+ + AR+    +++  + P   TYN LI GLC +G       
Sbjct: 124 ---VMAYNAMVAGYCVTGQLDAARR---LVADMPMEPDSYTYNTLIRGLCGRGRTGNALV 177

Query: 160 ------------------MIMEAD----------KLLVQMKEKGCFPDSTSFNTVIQGFL 191
                             +++EA           KLL +M+ KGC PD  ++N V+ G  
Sbjct: 178 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGIC 237

Query: 192 VKNETDRASSFLKK 205
            +   D A  FLK 
Sbjct: 238 QEGRVDDAIEFLKS 251


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING CK R ID A        +K +  +   Y++L+ GLC  + L EA ELF K
Sbjct: 262 HSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKK 321

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M + G+   L TY+ L+ D   K G    A+ LL +++  K E +I +Y+++I G+   G
Sbjct: 322 MCSSGMLPNLRTYSILL-DGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAG 380

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + E A++   +L   G+ P V TYNI+I GL K+G+  EA KL  +M++ G  PDS S+N
Sbjct: 381 KLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYN 440

Query: 185 TVIQGFLVKNETDRA 199
            +IQGFL   +   A
Sbjct: 441 VIIQGFLQNQDPSTA 455



 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN +C++  I  A+       K GI  D   +++LINGLC   R+KEAVELF
Sbjct: 120 NDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELF 179

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +      VT+  L+ D   K+G  S A  + +T+     E NI  Y+ +++G C 
Sbjct: 180 NEMAGRDAMPNTVTFTILV-DVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCL 238

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
                +A K  + +  KG  P V +Y+ILING CK   I EA  LL QM EK   P++ +
Sbjct: 239 RLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVT 298

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT++QG    +    A    KK
Sbjct: 299 YNTLMQGLCHASSLLEAQELFKK 321



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           G+  + +  + LIN LC  + +  AV +  KM   GI  + VT+  LI +    +GR   
Sbjct: 116 GVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLI-NGLCNEGRIKE 174

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   +       N   +++++D LC+ G   EAR   + ++EKG+ P + TYN L+N
Sbjct: 175 AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMN 234

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G C +  + +A K+   M  KGC P   S++ +I G+      D A + L +
Sbjct: 235 GYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQ 286



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 42/184 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G+CK   ++ A+K       + +  D+ +Y+ LI G+    +L+ A ELF
Sbjct: 330 NLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELF 389

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+ A GI   + TYN                                   ++I GL + 
Sbjct: 390 SKLFANGIRPSVRTYN-----------------------------------IMIKGLLKE 414

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K   ++ + G +P   +YN++I G  +      A +L+ +M  +    DS++F
Sbjct: 415 GLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTF 474

Query: 184 NTVI 187
             ++
Sbjct: 475 KMLL 478


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+ +D A+K       K I  +V  Y+SLI+GLC   R+  A+EL D M 
Sbjct: 353 YNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMH 412

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   +++TY+ ++    +      A+ALL  L+      N+  Y+++IDGLC+ GR E
Sbjct: 413 DRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLE 472

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +AR   + L  KG    V TY ++I G C  G+  EA  LL +MK+  C PD+ ++  +I
Sbjct: 473 DARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII 532

Query: 188 QGFLVKNETDRASSFLKK 205
                K+E D+A   L++
Sbjct: 533 CSLFDKDENDKAEKLLRE 550



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +R   N   Y   I+G C + ++  AI        + I  DV+ ++ L++  C   
Sbjct: 235 EMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG 294

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+KEA      M+ QGI  ++VTYN L+           A ++L T+        +  Y+
Sbjct: 295 RVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYN 354

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VI+G C++   ++A K   ++  K + P V+TYN LI+GLCK G I  A +L+  M ++
Sbjct: 355 IVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDR 414

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++++++      +  D+A + L K
Sbjct: 415 GQQPDIITYSSILDALCKNHLVDKAIALLIK 445



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G  LD   Y +LINGLC     + A+EL  ++  + +  ++V Y+ +I    + 
Sbjct: 164 DKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKD 223

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A  L   +   +   NI  YS +I G C VG+ ++A    ++++ + + P V T+
Sbjct: 224 KNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTF 283

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NIL++  CK+G + EA   L  M ++G  PD  ++N+++ G+ + NE + A S L
Sbjct: 284 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSIL 338



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K NF  + I IN  C++  I  A       +K G   D    ++ I G C   ++ +A+ 
Sbjct: 102 KPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALN 161

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             DK+VA G   + V+Y  LI+   +     +A+ LL+ ++    +L++ +YS +ID +C
Sbjct: 162 FHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMC 221

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +     +A     ++  + +   +VTY+ LI+G C  G + +A  L  +M  +   PD  
Sbjct: 222 KDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVY 281

Query: 182 SFNTVIQGF 190
           +FN ++  F
Sbjct: 282 TFNILVDAF 290



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 56/236 (23%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L +Q  + N + Y I I+G+CK   ++ A       + KG  L V  Y+ +I G C+   
Sbjct: 446 LKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGL 505

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT----------LERDK 105
             EA+ L  KM       + +TY  +I   ++K     A  LL+           LE   
Sbjct: 506 FDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGS 565

Query: 106 YELNI---EVYSLVIDGL-C----RVGRWEEARKKLDQL--------------------- 136
           + L+      + L  D L C      G W  A+  L+++                     
Sbjct: 566 WSLSFMAAPAHFLNNDSLQCTSSQESGNW--AKLLLERIYCDCVLTKSNMRDKDVECPSV 623

Query: 137 --------SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
                   S++G +  V TY ++I G C  G+  E+  LL +M+  GC PD+ +++
Sbjct: 624 IIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 71/152 (46%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           N + +AV LF+ ++ Q  T   + +  ++    + +   + ++L Q +E    + N   +
Sbjct: 49  NDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNF 108

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+  C++G    A   L ++ + G  P  +T N  I G C KG I +A     ++  
Sbjct: 109 NILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVA 168

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   D  S+ T+I G     ET  A   L++
Sbjct: 169 LGFHLDQVSYGTLINGLCKVGETRAALELLRR 200



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +  ++  L         + LF KM  +GI    V +N LI+   +      A ++L  + 
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKIL 132

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +    +  I G C  G+  +A    D+L   G     V+Y  LINGLCK G   
Sbjct: 133 KMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETR 192

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQG 189
            A +LL ++  K    D   ++T+I  
Sbjct: 193 AALELLRRVDGKLVQLDVVMYSTIIDS 219


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 119/205 (58%), Gaps = 9/205 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + + Y   I G+C     D+A+       ++G   DV  Y+ L+   C  +  K+AV
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L D+M  +G   ++VTYN ++ +   ++GR   AM  L++L     E N   Y++V+ G
Sbjct: 208 KLLDEMRDKGCAPDIVTYN-VVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKG 266

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC   RWE+A K + ++S KG  P VVT+N+LI+ LC++G++  A ++L Q+ + GC P+
Sbjct: 267 LCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPN 326

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
           S S+N ++  F  + + DRA +F++
Sbjct: 327 SLSYNPILHAFCKQKKMDRAMAFVE 351



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       +  G   D+  Y++L+  LC    +  AVEL 
Sbjct: 326 NSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELL 385

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G T  L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 386 HQLKDKGCTPVLISYNTVI-DGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR EEA K   ++ + G+ P  V YN ++ GLCK+     A  L   M   GC P+ ++
Sbjct: 445 EGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNEST 504

Query: 183 FNTVIQGF 190
           +  +I+G 
Sbjct: 505 YTILIEGL 512



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+C     + A K       KG   +V  ++ LI+ LC    ++ A+E+ 
Sbjct: 256 NTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL 315

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D++   G T   ++YNP++H   +++    AMA ++ +       +I  Y+ ++  LCR 
Sbjct: 316 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRG 375

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  KG  PD  ++
Sbjct: 376 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITY 435

Query: 184 NTVIQGFLVKNETDRA 199
           +T+  G   +   + A
Sbjct: 436 STISSGLCREGRIEEA 451



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D A++        G   +   Y+ ++ GLCT
Sbjct: 210 LDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCT 269

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A +L  +M  +G    +VT+N LI     +     AM +L  + +     N   
Sbjct: 270 AERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLS 329

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + + A   ++ +   G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 330 YNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 389

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T+ A   L +
Sbjct: 390 DKGCTPVLISYNTVIDGLTKAGKTEEALELLNE 422



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y++++ G C   +L  A  L   + A  +  +  TYN LI     +    +A+A+L
Sbjct: 119 DVMSYNAMVAGYCVTGQLDNARRL---VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVL 175

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + R     ++  Y+++++  C+   +++A K LD++ +KG  P +VTYN+++NG+C++
Sbjct: 176 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQE 235

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G + +A + L  +   GC P++ S+N V++G       + A   + +
Sbjct: 236 GRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 282



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 91/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   K G   +   Y+ +++  C   ++  A+   + MV+ G   ++V+YN L+     
Sbjct: 315 LDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCR 374

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                +A+ LL  L+       +  Y+ VIDGL + G+ EEA + L+++  KGL P ++T
Sbjct: 375 GGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIIT 434

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y+ + +GLC++G I EA K   ++++ G  P++  +N ++ G   +  T  A
Sbjct: 435 YSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSA 486



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+ K  + + A       + KG+  D+  YS++ +GLC   R++EA++ F K+ 
Sbjct: 400 YNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQ 459

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI    V YN ++    +++   SA+ L   +  +    N   Y+++I+GL   G  +
Sbjct: 460 DMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVK 519

Query: 128 EARKKLDQLSEKGLV 142
           EAR+ + +L  +G+V
Sbjct: 520 EAREMMAELCSRGVV 534



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I  LC  GR  EAR+ L         P V++YN ++ G C  G +  A +L+  M  
Sbjct: 94  AALIKKLCASGRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNARRLVAAMPM 148

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +   PD+ ++NT+I+G   +  TD A + L
Sbjct: 149 E---PDTYTYNTLIRGLCGRGRTDNALAVL 175


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 115/195 (58%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING CK R +D A        +K +  D   YS+L+ GLC   R +EA+ LF +
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 432

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M + G+  +L+TY+ L+ D   K G    A+ LL++++  K E +I +Y+++I+G+   G
Sbjct: 433 MCSSGLLPDLMTYSTLL-DGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAG 491

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + E A++   +L   G+ P + TY I+I GL K+G+  EA +L  +M++ G  P+S S+N
Sbjct: 492 KLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYN 551

Query: 185 TVIQGFLVKNETDRA 199
            +IQGFL   ++  A
Sbjct: 552 VIIQGFLQNQDSSTA 566



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  K N   Y   I+ +CK   ++ A       + +GI  DV  YS++++G C+   
Sbjct: 223 MEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L EA  LF++MV + +    VT+  L+ D   K+G  S A  + + + +   E N   Y+
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILV-DGLCKEGMVSEARCVFEAMTKKGAEPNAYTYN 341

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C   + +EA+K LD + +KG  P V +YNILING CK+  + EA  LLV+M EK
Sbjct: 342 ALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEK 401

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ +++T++QG         A +  K+
Sbjct: 402 ELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 432



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 108/202 (53%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ++G+CK   +  A        KKG   + + Y++L++G C  N++ EA ++ 
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV +G    + +YN LI+   +++    A +LL  +   +   +   YS ++ GLC+V
Sbjct: 361 DIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQV 420

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR +EA     ++   GL+P ++TY+ L++GLCK G + EA KLL  M+E    PD   +
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I+G  +  + + A     K
Sbjct: 481 NILIEGMFIAGKLEVAKELFSK 502



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN +C++  +  AI       K GI  D   +++LING C    +KEAV LF
Sbjct: 126 NVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLF 185

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++MV +G   ++++Y+ +I+   +      A+ LL+ +E    + N+  Y+ +ID LC+ 
Sbjct: 186 NEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKD 245

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYN---------------------------------- 149
               +A   L ++ ++G+ P VVTY+                                  
Sbjct: 246 TLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTF 305

Query: 150 -ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            IL++GLCK+GM+ EA  +   M +KG  P++ ++N ++ G+ + N+ D A   L
Sbjct: 306 TILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +V+  + LIN LC  N +  A+ +  KM   GI  + +T+N LI+    +     A
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   + R  ++ ++  YS VI+GLC+ G    A + L ++ EKG  P +V Y  +I+ 
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           LCK  ++ +A  LL +M ++G  PD  +++T++ GF      + A+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEAT 287



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+  F +M+       +V +   +    +K+   + ++L   +  D + +   VYSL
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQM--DLFGVTHNVYSL 130

Query: 116 --VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I+ LCR+     A   L ++ + G+ P  +T+N LING C +G I EA  L  +M  
Sbjct: 131 NILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVR 190

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  PD  S++TVI G      T  A   L+K
Sbjct: 191 RGHQPDVISYSTVINGLCKSGNTSMALQLLRK 222



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 42/181 (23%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   +D A+K         I  D+ +Y+ LI G+    +L+ A ELF K+
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL 503

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A GI                                   +  I  Y+++I GL + G  
Sbjct: 504 FADGI-----------------------------------QPTIRTYTIMIKGLLKEGLS 528

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +   ++ + G +P   +YN++I G  +      A +L+ +M  K    DS++F  +
Sbjct: 529 DEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQML 588

Query: 187 I 187
           +
Sbjct: 589 L 589


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 113/197 (57%), Gaps = 9/197 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G CK + ID A       I +G+  D   Y++LI+GLC   RL+EA +LF  M 
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G   +L TY+ L+ D + K+G    A  L + ++    + +I +Y+++ID +C+ G  
Sbjct: 438 SNGNLPDLFTYSMLL-DGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNL 496

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++ARK   +L  +GL+P V  Y  +IN LCK+G++ EA +    M+  GC PD  S+N +
Sbjct: 497 KDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVI 556

Query: 187 IQGFLVKNETDRASSFL 203
           I+GFL   +  RA+  +
Sbjct: 557 IRGFLQYKDESRAAQLI 573



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 9/195 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E   + N   Y I I+ +CK + ++ A+        K I  D+F Y+SLI GLC F R
Sbjct: 226 MEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRR 285

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  L ++M +  I   + T+N L+ D   K+G+ S A  + +T+     E ++  YS
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLV-DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYS 344

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G        EARK  D +  KG  P   +YNILI G CK   I EA +L  +M  +
Sbjct: 345 SLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ 404

Query: 175 GCFPDSTSFNTVIQG 189
           G  PD+ ++NT+I G
Sbjct: 405 GLTPDNVNYNTLIHG 419



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK+ +   A++        G    V+ Y+++INGLC       A  LF KM   G 
Sbjct: 172 INGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGC 231

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN LI    + +    A+ +   ++  +   +I  Y+ +I GLC   RW+EA  
Sbjct: 232 QPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASA 291

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L++++   ++P + T+N+L++ +CK+G + EA  +   M E G  PD  ++++++ G+ 
Sbjct: 292 LLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYS 351

Query: 192 VKNETDRA 199
           ++ E   A
Sbjct: 352 LRMEIVEA 359



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ING+CKI E  +A        + G   +V  Y+ LI+ LC    + EA+++F  
Sbjct: 201 YTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSY 260

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M A+ I+ ++ TYN LI      +    A ALL  +       NI  +++++D +C+ G+
Sbjct: 261 MKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGK 320

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA+     ++E G+ P VVTY+ L+ G   +  I+EA KL   M  KGC PD+ S+N 
Sbjct: 321 VSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNI 380

Query: 186 VIQGFLVKNETDRA 199
           +I+G+      D A
Sbjct: 381 LIKGYCKAKRIDEA 394



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  D++  S LI+      R+  A  +F KM+  G+  + VT+N LI +   K G+F+ 
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLI-NGLCKVGKFAQ 183

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+      E    +  +  Y+ +I+GLC++G    A     ++ E G  P VVTYNILI+
Sbjct: 184 AVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILID 243

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LCK  ++ EA  +   MK K   PD  ++N++IQG         AS+ L +
Sbjct: 244 SLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNE 295



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I I+    ++ +D A       IK G+  D   +++LINGLC   +  +AVE F
Sbjct: 129 DIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFF 188

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D   A G    + TY  +I+   +     +A  L + +E    + N+  Y+++ID LC+ 
Sbjct: 189 DDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKD 248

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               EA      +  K + P + TYN LI GLC      EA  LL +M      P+  +F
Sbjct: 249 KLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTF 308

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N ++     + +   A    K
Sbjct: 309 NVLVDAICKEGKVSEAQGVFK 329



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELN 109
           +F  + +A+  F+ M+ +     ++ +  L+     K G++  + ++L + +E      +
Sbjct: 71  SFRNIDDALASFNHMLHREPLPCIIQFTKLL-SAIVKMGQYYGAVISLSKQMELAGLSPD 129

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I   S++ID    + R + A     ++ + GL P  VT+N LINGLCK G   +A +   
Sbjct: 130 IYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFD 189

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  GC P   ++ T+I G     ET  A+   KK
Sbjct: 190 DFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKK 225



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 48/175 (27%)

Query: 11  NFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +   Y + ++G CK           R + S   K    D+ +Y+ LI+ +C F  LK+A 
Sbjct: 444 DLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP---DIAMYNILIDAMCKFGNLKDAR 500

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF ++  QG+                                     N+++Y+ +I+ L
Sbjct: 501 KLFSELFVQGLLP-----------------------------------NVQIYTTIINNL 525

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           C+ G  +EA +    +   G  P   +YN++I G  +      A +L+ +M+++G
Sbjct: 526 CKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580



 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +  +Y I I+ MCK   +  A K       +G+  +V +Y+++IN LC    L EA+E
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 62  LFDKMVAQGITAELVTYNPLI 82
            F  M   G   +  +YN +I
Sbjct: 537 AFRNMEGDGCPPDEFSYNVII 557


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L  A ELF
Sbjct: 500 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 559

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +   +VTY  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 560 QEMVSRKVPPNIVTYKILLDGLCDNGESE---KALEIFEKIEKSKMELDIGIYNIIIHGM 616

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ PGV TYNI+I GLCKKG + EA+ L  +M+E G  PD 
Sbjct: 617 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 676

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L   +  ++   +++
Sbjct: 677 WTYNILIRAHLGDGDATKSVKLIEE 701



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   + N   YG  +N MCK  +   A++       + I LD   YS +I+GLC    
Sbjct: 317 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 376

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A  LF++M  +GIT  ++TYN LI   +   GR+   A LL+ + + K   N+  +S
Sbjct: 377 LDNAFNLFNEMEMKGITTNIITYNILI-GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 435

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   + G+  EA +   ++  +G+ P  +TY  LI+G CK+  + +A++++  M  K
Sbjct: 436 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 495

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FN +I G+   N  D      +K
Sbjct: 496 GCDPNIRTFNILINGYCKANRIDDGLELFRK 526



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 42/238 (17%)

Query: 8   FKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N   +   ING+C   ++ E    +D  ++ G   D+   ++L+NGLC   +  EA+
Sbjct: 252 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 311

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L DKMV  G     VTY P+++   +      AM LL+ +E    +L+   YS++IDGL
Sbjct: 312 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 371

Query: 121 CR-----------------------------------VGRWEEARKKLDQLSEKGLVPGV 145
           C+                                    GRW++  K L  + ++ + P V
Sbjct: 372 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 431

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           VT+++LI+   K+G + EA++L  +M  +G  PD+ ++ ++I GF  +N  D+A+  +
Sbjct: 432 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 489



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +D A       + KG   ++  ++ LING C  NR+ + +ELF KM
Sbjct: 468 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 527

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+ A+ VTYN LI    E      A  L Q +   K   NI  Y +++DGLC  G  
Sbjct: 528 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 587

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A +  +++ +  +   +  YNI+I+G+C    + +A  L   +  KG  P   ++N +
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 648 IGGLCKKGPLSEAELLFRK 666



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+ R++  A       IK G   +   +S+LINGLC   R+ EA+EL 
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   +L+T N L++          AM L+  +     + N   Y  V++ +C+ 
Sbjct: 280 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 339

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+   A + L ++ E+ +    V Y+I+I+GLCK G +  A  L  +M+ KG   +  ++
Sbjct: 340 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 399

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I GF      D  +  L+
Sbjct: 400 NILIGGFCNAGRWDDGAKLLR 420



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  +A++LF  M+       ++ ++ L     + +     +AL + +E      N+   S
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 225

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+  CR  +   A   + ++ + G  P  +T++ LINGLC +G + EA +L+ +M E 
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  + NT++ G  +  +   A   + K
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDK 316


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 7/181 (3%)

Query: 15  YGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNR-LKEAVELFDKMVAQ 69
           Y   +NG+CK   +D A    + KG   +V  YS+LI+GLC   R + EA++LF  ++ Q
Sbjct: 118 YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G   E+ TYN LI D   K+ R + A  L   L +   E +   Y++ IDGLC+ GR E+
Sbjct: 178 GYEPEVPTYNILI-DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 236

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A   L  + EKG VP VV++N +INGLCK+  + EA+ LL  M+ KGC P++ SFNT+I 
Sbjct: 237 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 296

Query: 189 G 189
           G
Sbjct: 297 G 297



 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 40/236 (16%)

Query: 8   FKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  +   Y   ++G CK+ E+D        A+K+G   DV  Y++LING C  ++L EA 
Sbjct: 41  YSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 100

Query: 61  ELFDKMVAQGITAELVTYNPLIHD---------------------------------NWE 87
            +  +MV++ +  ++VTYN L++                                    E
Sbjct: 101 RILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRE 160

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +G   A+ L  ++ +  YE  +  Y+++IDGL +  R  EA +    L + GL P  +T
Sbjct: 161 LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 220

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           Y + I+GLCK G + +A  +L  M EKGC PD  S N VI G   +   D A   L
Sbjct: 221 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLL 276



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L +   + +   Y + I+G+CK   ++ A+       +KG   DV  ++++INGLC   R
Sbjct: 209 LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 268

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  L   M A+G +   +++N LI           AM   + + +   +  +  Y++
Sbjct: 269 VDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNI 328

Query: 116 VIDGLCRV---GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++DGLC+    GR +EA    D + EKG VP VVTY+ LI+GL K G + +A +LL  M+
Sbjct: 329 LVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 388

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KGC P+  ++N++I G     + D A
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEA 415



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 10/181 (5%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK + +D A         KG   +   +++LI G C   + K+A+  F +M+ +G+
Sbjct: 260 INGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGV 319

Query: 72  TAELVTYNPLIHD--NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
              +VTYN L+       ++GR   A+ L   +       ++  YS +IDGL + G+ ++
Sbjct: 320 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 379

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           AR+ L  +  KG +P V TYN LI+GLC    + EA +L V M EKGC PD+ ++ T+I 
Sbjct: 380 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439

Query: 189 G 189
            
Sbjct: 440 A 440



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 10/209 (4%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           +Q ++     Y I I+G+ K   ++ A       +K G+  D   Y+  I+GLC   R++
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A+ +   M  +G   ++V++N +I+   +++    A  LL  +E      N   ++ +I
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK---KGMIMEADKLLVQMKEK 174
            G CR G+W++A     ++ ++G+ P VVTYNIL++GLCK   +G I EA  L   M EK
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 355

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD  +++ +I G     + D A   L
Sbjct: 356 GRVPDVVTYSALIDGLGKAGKLDDARRLL 384



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 11/205 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +  F  N   Y   ++G+C    +  A       IK G   DV  Y++L++G C    
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA+++FD  V +G   ++VTYN LI+   +      A  +LQ +  +    ++  Y+ 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEK 174
           +++GLC+ GR +EAR     + +KG  P V+TY+ LI+GLC++   + EA KL   + ++
Sbjct: 121 LVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++N +I G L ++  + A
Sbjct: 178 GYEPEVPTYNILIDGLLKEDRVNEA 202



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ GLC  GR  +A+   +++ + G  P VVTYN L++G CK G + EA K+     
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAV 72

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++G  PD  ++N +I GF   ++ D A   L++
Sbjct: 73  KRGFVPDVVTYNALINGFCKADKLDEAQRILQR 105



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 45/163 (27%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE----------IDSAIKKGICLDVFVYSSLINGLC 51
           ++ ++  K     Y I ++G+CK R+           D+ I+KG   DV  YS+LI+GL 
Sbjct: 313 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLG 372

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              +L +A  L   M A+G    + TYN LI                             
Sbjct: 373 KAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS---------------------------- 404

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                  GLC + + +EA +    + EKG VP  +TY  +I+ 
Sbjct: 405 -------GLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ING+CK + +D A       + K +  D   Y+SLI+GLC   R+  A+ L 
Sbjct: 252 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 311

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G  A++VTY  L+    + Q    A AL   ++    +  +  Y+ +IDGLC+ 
Sbjct: 312 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKG 371

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR + A++    L  KG    V TY ++I+GLCK+GM  EA  +  +M++ GC P++ +F
Sbjct: 372 GRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 431

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I+    K+E D+A   L +
Sbjct: 432 EIIIRSLFEKDENDKAEKLLHE 453



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ N   YG  +NG+CK  E   AIK       +    +V +YS++I+GLC    
Sbjct: 106 VVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKL 165

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +L+ +M A+ I   ++TYN LI           A +LL  +       ++  +S+
Sbjct: 166 VNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSI 225

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+   A++    + + G+ P V +YNI+INGLCK   + EA  LL +M  K 
Sbjct: 226 LIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN 283

Query: 176 CFPDSTSFNTVIQGF 190
             PD+ ++N++I G 
Sbjct: 284 MVPDTVTYNSLIDGL 298



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCK----IREIDSA-IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + + + I I+ +CK     ++I  A ++ G+  +V+ Y+ +INGLC   R+ EA+ L  +
Sbjct: 219 DVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 278

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ + +  + VTYN LI D   K GR  SA+ L+  +       ++  Y+ ++D LC+  
Sbjct: 279 MLHKNMVPDTVTYNSLI-DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 337

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             ++A     ++ E+G+ P + TY  LI+GLCK G +  A +L   +  KGC  D  ++ 
Sbjct: 338 NLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 397

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I G   +   D A +   K
Sbjct: 398 VMISGLCKEGMFDEALAIKSK 418



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I SA+        +G   DV  Y+SL++ LC    L +A  LF KM 
Sbjct: 291 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 350

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   + TY  LI D   K GR  +A  L Q L      +++  Y+++I GLC+ G +
Sbjct: 351 ERGIQPTMYTYTALI-DGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMF 409

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +EA     ++ + G +P  VT+ I+I  L +K    +A+KLL +M  KG
Sbjct: 410 DEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 458



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I IN  C + ++  +       +K G   +   +++L+ GLC    +K+ +   
Sbjct: 44  NLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFH 103

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DK+VAQ      V+Y  L++   +      A+ LL+ +E      N+ +YS +IDGLC+ 
Sbjct: 104 DKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKD 163

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               EA     ++  + + P V+TYN LI   C  G +M A  LL +M  K   PD  +F
Sbjct: 164 KLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTF 223

Query: 184 NTVIQGF 190
           + +I   
Sbjct: 224 SILIDAL 230



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  ++   S LIN  C   ++  +  L  K++  G     +T+  L+     K     
Sbjct: 39  KGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKK 98

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +     +    ++ N   Y  +++GLC+ G    A K L  + ++   P VV Y+ +I+
Sbjct: 99  LLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIID 158

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK  ++ EA  L  +M  +  FP+  ++NT+I  F +  +   A S L +
Sbjct: 159 GLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHE 210



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+  KG+   +VT +ILIN  C  G +  +  LL ++ + G  P++ ++ T+++G  +K 
Sbjct: 35  QMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKG 94

Query: 195 ETDRASSFLKK 205
           E  +   F  K
Sbjct: 95  EVKKLLHFHDK 105


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ING+CK + +D A       + K +  D   Y+SLI+GLC   R+  A+ L 
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G  A++VTY  L+    + Q    A AL   ++    +  +  Y+ +IDGLC+ 
Sbjct: 349 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKG 408

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR + A++    L  KG    V TY ++I+GLCK+GM  EA  +  +M++ GC P++ +F
Sbjct: 409 GRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 468

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I+    K+E D+A   L +
Sbjct: 469 EIIIRSLFEKDENDKAEKLLHE 490



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ +   YG  +NG+CKI E   A+K       +    +V +Y+++I+GLC    
Sbjct: 106 VVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKL 165

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +L+ +M A+GI  + +TY  LI+          A +LL  +        + +Y++
Sbjct: 166 VNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNI 225

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+ LC+ G  +EA+  L  ++++G+ PGVVTY+ L++G C  G +  A ++   M + G
Sbjct: 226 LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMG 285

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P+  S+N +I G       D A + L++
Sbjct: 286 VNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 7/193 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           ++  + N  +Y   I+G+CK + ++ A         +GI  D   Y++LI G C   +L 
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLM 202

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A  L D+M+ + I   +  YN LI+   ++     A  LL  + ++  +  +  YS ++
Sbjct: 203 GAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C VG  + A++    + + G+ P V +YNI+INGLCK   + EA  LL +M  K   
Sbjct: 263 DGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 322

Query: 178 PDSTSFNTVIQGF 190
           PD+ ++N++I G 
Sbjct: 323 PDTVTYNSLIDGL 335



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T++  K     Y   ++G C + E+ +A       ++ G+  +V+ Y+ +INGLC   R
Sbjct: 246 MTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ L  +M+ + +  + VTYN LI D   K GR  SA+ L+  +       ++  Y+
Sbjct: 306 VDEAMNLLREMLHKNMVPDTVTYNSLI-DGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D LC+    ++A     ++ E+G+ P + TY  LI+GLCK G +  A +L   +  K
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 424

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC  D  ++  +I G   +   D A +   K
Sbjct: 425 GCCIDVWTYTVMISGLCKEGMFDEALAIKSK 455



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   I SA+        +G   DV  Y+SL++ LC    L +A  LF KM 
Sbjct: 328 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   + TY  LI D   K GR  +A  L Q L      +++  Y+++I GLC+ G +
Sbjct: 388 ERGIQPTMYTYTALI-DGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMF 446

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA     ++ + G +P  VT+ I+I  L +K    +A+KLL +M  KG        +  
Sbjct: 447 DEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL----VLDFK 502

Query: 187 IQGFLVKNETDRASSFLKK 205
           +    V+NE D+A   L +
Sbjct: 503 VADVFVQNENDKAEKLLHE 521



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 42/234 (17%)

Query: 8   FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + NF    I IN  C + +       +   +K G   D    ++L+ GLC    +K+++
Sbjct: 41  IRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSL 100

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              DK+VAQG   + V+Y  L++   +      A+ LL+ +E      N+ +Y+ +IDGL
Sbjct: 101 HFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGL 160

Query: 121 CR-----------------------------------VGRWEEARKKLDQLSEKGLVPGV 145
           C+                                   +G+   A   LD++  K + PGV
Sbjct: 161 CKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGV 220

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             YNILIN LCK+G + EA  LL  M ++G  P   +++T++ G+ +  E   A
Sbjct: 221 YIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNA 274



 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L ++ ++  A     Q+  KG+    VT NILIN  C  G +  +  +L ++ 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  PD+ + NT+++G  +K E  ++  F  K
Sbjct: 73  KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDK 105


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L  A ELF
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +   +VTY  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESE---KALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ PGV TYNI+I GLCKKG + EA+ L  +M+E G  PD 
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L   +  ++   +++
Sbjct: 579 WTYNILIRAHLGDGDATKSVKLIEE 603



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   + N   YG  +N MCK  +   A++       + I LD   YS +I+GLC    
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A  LF++M  +GIT  ++TYN LI   +   GR+   A LL+ + + K   N+  +S
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILI-GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 337

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   + G+  EA +   ++  +G+ P  +TY  LI+G CK+  + +A++++  M  K
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FN +I G+   N  D      +K
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRK 428



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%)

Query: 8   FKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N   +   ING+C   ++ E    +D  ++ G   D+   ++L+NGLC   +  EA+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L DKMV  G     VTY P+++   +      AM LL+ +E    +L+   YS++IDGL
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  + A    +++  KG+   ++TYNILI G C  G   +  KLL  M ++   P+ 
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            +F+ +I  F VK    R +  L K M
Sbjct: 334 VTFSVLIDSF-VKEGKLREAEELHKEM 359



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +D A       + KG   ++  ++ LING C  NR+ + +ELF KM
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+ A+ VTYN LI    E      A  L Q +   K   NI  Y +++DGLC  G  
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A +  +++ +  +   +  YNI+I+G+C    + +A  L   +  KG  P   ++N +
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 550 IGGLCKKGPLSEAELLFRK 568



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+ R++  A       IK G   +   +S+LINGLC   R+ EA+EL 
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   +L+T N L++          AM L+  +     + N   Y  V++ +C+ 
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+   A + L ++ E+ +    V Y+I+I+GLCK G +  A  L  +M+ KG   +  ++
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 301

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I GF      D  +  L+
Sbjct: 302 NILIGGFCNAGRWDDGAKLLR 322



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 73/148 (49%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A++LF  M+       ++ ++ L     + +     +AL + +E      N+   S++I
Sbjct: 71  DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +  CR  +   A   + ++ + G  P  +T++ LINGLC +G + EA +L+ +M E G  
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 190

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  + NT++ G  +  +   A   + K
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDK 218



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 42/193 (21%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  ++   N   Y I ++G+C   E + A+       K  + LD+ +Y+ +I+G+C  +
Sbjct: 463 EMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 522

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A +LF  +  +G+   + TYN                                   
Sbjct: 523 KVDDAWDLFCSLPLKGVKPGVKTYN----------------------------------- 547

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA     ++ E G  P   TYNILI      G   ++ KL+ ++K  
Sbjct: 548 IMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRC 607

Query: 175 GCFPDSTSFNTVI 187
           G   D+++   VI
Sbjct: 608 GFSVDASTIKMVI 620


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I ING C ++ ID A       I +G+  +   Y++LI+  C   +L+EA E
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M   G   +L TY+ L+ + + KQG    A  L + ++    + N+ +Y+++ID +
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLL-EGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSM 486

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G    ARK   +L   GL P V  Y  +INGLCK+G++ EA +   +M+E GC P+ 
Sbjct: 487 CKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNE 546

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+N +I+GFL   +  RA
Sbjct: 547 FSYNVIIRGFLQHKDESRA 565



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCTFN 54
           D+  +  + + + Y   ING+CK+ E  +A   IKK    G   DV  YS+LI+ LC   
Sbjct: 186 DMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDR 245

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+++F  M A+GI+  +V+Y  LI           A A+L  +       +I  +S
Sbjct: 246 LVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFS 305

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L+ID  C+ G   EA+  L  ++E G+ P V+TYN L++G   +  ++EA KL   M  +
Sbjct: 306 LLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITR 365

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC PD  S++ +I G+ +    D A
Sbjct: 366 GCKPDVFSYSILINGYCMVKRIDEA 390



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK R ++ A+        KGI   V  Y+SLI GLC+F+R KEA  + ++M
Sbjct: 233 TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM 292

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            +  I  ++VT++ LI D + K+G    A  +L+T+     E N+  Y+ ++ G      
Sbjct: 293 TSLNIMPDIVTFSLLI-DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQME 351

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EARK  D +  +G  P V +Y+ILING C    I EA +L  +M  +G  P++ S+ T
Sbjct: 352 VVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTT 411

Query: 186 VIQGF 190
           +I  F
Sbjct: 412 LIHAF 416



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 44/226 (19%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C ++ +D         IK G+   +  +++LINGLC      +A+ELFD MVA+
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMA--------------------LLQTLERDKY--- 106
           G   ++ TY  +I +   K G  +A A                    L+ +L +D+    
Sbjct: 191 GCQPDVYTYTTII-NGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNE 249

Query: 107 -------------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                           +  Y+ +I GLC   RW+EA   L++++   ++P +VT+++LI+
Sbjct: 250 ALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLID 309

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             CK+G ++EA  +L  M E G  P+  ++N+++ G+ ++ E   A
Sbjct: 310 IFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEA 355



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNI 110
           +F  + +A+  F+ M+ +     ++ +N L+      +  + A ++L + +E      N 
Sbjct: 67  SFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNT 126

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              +++I+  C +   +     L ++ + GL P ++T+  LINGLCK G   +A +L   
Sbjct: 127 CTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDD 186

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +GC PD  ++ T+I G     ET  A+  +KK
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKK 221


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I ING+CK + +D A       + K +  D   YSSLI+GLC   R+   ++L 
Sbjct: 289 DVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLT 348

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G  A LVTYN L+    + Q    A+AL   ++    + N   Y+ +IDGLC+ 
Sbjct: 349 KEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKG 408

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR ++ +     L  KG    V TY ++I+GLCK+GM  EA  +  +M++ GC P++ +F
Sbjct: 409 GRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTF 468

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I+  L K+E D+A   L +
Sbjct: 469 EIIIRSLLEKDENDKAEKLLHE 490



 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 115/216 (53%), Gaps = 11/216 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ +   YGI +NG+CKI E   AIK       +    DV +YS++I+GLC    
Sbjct: 106 VVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKL 165

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +L+ +M A+GI  +++TY  LI           A  LL  +       NI  Y+ 
Sbjct: 166 VDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNT 225

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+ +E++  L  +++KG+ P VV Y+IL++G C  G + +A ++ + M + G
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK----KNM 207
             PD  S+N +I G       D A + L+    KNM
Sbjct: 286 VNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   I+ +CK  ++  +        KKG+  DV +YS L++G C    +++A ++F
Sbjct: 219 NIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIF 278

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G+  ++ +YN +I+   + +    AM LL+ +       +   YS +IDGLC++
Sbjct: 279 LVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKL 338

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR         ++  +G    +VTYN L++GLCK   + +A  L ++MKE+G  P+  ++
Sbjct: 339 GRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 398

Query: 184 NTVIQGF 190
             +I G 
Sbjct: 399 TALIDGL 405



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + +D A         +GI  DV  Y++LI G C   +L EA  L ++M
Sbjct: 152 MYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM 211

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG- 124
           + + I   + TYN LI D   K+G+   +  LL  + +   + ++ +YS+++DG C VG 
Sbjct: 212 ILKNINPNIYTYNTLI-DTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGE 270

Query: 125 ----------------------------------RWEEARKKLDQLSEKGLVPGVVTYNI 150
                                             R +EA   L ++  K ++P  VTY+ 
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSS 330

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+GLCK G I     L  +M  +G   +  ++N+++ G       D+A +   K
Sbjct: 331 LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMK 385



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 93/172 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   +  + ++L+ GLC    +K+++   DK+VAQG   + V+Y  L++   +    
Sbjct: 72  LKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGET 131

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL+T+E      ++ +YS +IDGLC+    +EA     +++ +G+ P V+TY  L
Sbjct: 132 RCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTL 191

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I G C  G +MEA  LL +M  K   P+  ++NT+I     + +   + + L
Sbjct: 192 ICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLL 243



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 9/172 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK+  I + +        +G   ++  Y+SL++GLC    L +A+ LF KM 
Sbjct: 328 YSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK 387

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI     TY  LI D   K GR     AL Q L    Y +++  Y+++I GLC+ G +
Sbjct: 388 ERGIQPNKYTYTALI-DGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMF 446

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           +EA     ++ + G +P  VT+ I+I  L +K    +A+KLL +M  KG  P
Sbjct: 447 DEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL-----IHDNWEK 88
           KGI  D+   S LIN  C   ++  +  +  K++  G     +  N L     +    +K
Sbjct: 39  KGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKK 98

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
              F    + Q  + D+       Y ++++GLC++G    A K L  + ++   P VV Y
Sbjct: 99  SLHFHDKVVAQGFQMDQVS-----YGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMY 153

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + +I+GLCK  ++ EA  L  +M  +G FPD  ++ T+I GF +  +   A   L
Sbjct: 154 STIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLL 208



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  L ++  +        Q+  KG+VP +VT +ILIN  C  G +  +  +L ++ + G
Sbjct: 16  ILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLG 75

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++   NT+++G  +K E  ++  F  K
Sbjct: 76  YQPNTIILNTLMKGLCLKGEVKKSLHFHDK 105


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 110/200 (55%), Gaps = 9/200 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +  VY I ING CK R ++ A         + +  D   YS+L+ G C   R + A 
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQ 406

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +LF +M + G+  + +TY+ L+ D   K G    A  LL+ ++  K E +I +Y+++I G
Sbjct: 407 KLFKEMCSYGLLPDSITYSILL-DGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQG 465

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C  G+ E AR+    L  KG+ P VVTY ++I+GL K+G+  EA ++  +M   GC P+
Sbjct: 466 MCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN 525

Query: 180 STSFNTVIQGFLVKNETDRA 199
           S ++N  IQGFL   +   A
Sbjct: 526 SCTYNVAIQGFLRNGDPSNA 545



 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  K +   Y   I+ +CK R  + A       + +GI  +V  YSS+++G C   +
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQ 261

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
           L EA  LF +M+ + +    VT+  L+ D   K+G    A  + + +  +  E +   YS
Sbjct: 262 LNEATSLFKQMIGRNVMPNTVTFTILV-DGLCKEGMILEARRVFEMMTENGVEPDAYTYS 320

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C   + +EA+K  D +  KG  P V  YNILING CK   + EA  LL +M ++
Sbjct: 321 ALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDR 380

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ +++T++QGF        A    K+
Sbjct: 381 DLTPDTVTYSTLMQGFCQAGRPQVAQKLFKE 411



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 8/195 (4%)

Query: 13  HV-YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           HV +G  +NG+C   +I  A+K        G    +  Y+++I GLC       A++L  
Sbjct: 141 HVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLK 200

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           KM  +G   ++V YN +I    + +    AM     +       N+  YS ++ G C +G
Sbjct: 201 KMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLG 260

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  EA     Q+  + ++P  VT+ IL++GLCK+GMI+EA ++   M E G  PD+ +++
Sbjct: 261 QLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYS 320

Query: 185 TVIQGFLVKNETDRA 199
            ++ G+ ++++ D A
Sbjct: 321 ALMDGYCLQSQMDEA 335



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ++G+CK        R  +   + G+  D + YS+L++G C  +++ EA +LFD M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G    +  YN LI+ + + +    A  LL  +       +   YS ++ G C+ GR 
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRP 402

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A+K   ++   GL+P  +TY+IL++GLCK G + EA +LL  M+E    P    +N +
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462

Query: 187 IQG 189
           IQG
Sbjct: 463 IQG 465



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 39  DVFVYSSLINGLCTFNR--LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           +V+  + LIN LC  NR  +  A     KM   G+    VT+  L++    K     A+ 
Sbjct: 103 NVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVK 162

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   + +  +  ++  Y+ +I GLC++G    A + L ++ EKG  P VV YN +I+ LC
Sbjct: 163 LFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLC 222

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K     EA     +M ++G  P+  ++++++ GF    + + A+S  K+
Sbjct: 223 KDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQ 271



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E + + +  +Y I I GMC   ++++A         KGI   V  Y+ +I+GL     
Sbjct: 447 MQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGL 506

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E+F KMV  G      TYN  I          +A+ L++ +    +  +   + +
Sbjct: 507 SNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQM 566

Query: 116 VID 118
           ++D
Sbjct: 567 LLD 569


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 1   FDLTEQR-FKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           +DL E+  + G   +   Y   I G CK ++ D A++       +G   DV  YS LI+G
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 50  LCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE 107
           LC   RLKEA++LF +M+  G      VTYN LI   + + G+   AM LL+ +      
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS-GFCRMGKMDEAMNLLERMAETGSS 253

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++  Y+ +++G C++ R ++A   L+Q++ KGL P VVT+  L++GLC++  + +A  +
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L +M+ K C P   ++NT++ G+   N+ + A  F+ + M
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 11/203 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C++ ++D A+       + G   DV  Y++L+NG C   RL +A +L 
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +G+T ++VT+  L+ D   ++ R S A+ +L  + R      +  Y+ ++DG CR
Sbjct: 280 NQMTRKGLTPDVVTFTSLM-DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 338

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             + EEARK +  L E    P VV++NI+I GLCK     EA +L+ + + + C PD   
Sbjct: 339 ANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 396

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + TVI G   + + D A    +K
Sbjct: 397 YTTVIDGLCREKKVDEACRVYRK 419



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNR 55
           ++  +    N   Y + I+G+CK   +D A+      +K        Y+SLI+GLC   R
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAER 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +L ++MV  G   ++ TY  LI    + +    A+ + + L    +  ++  YS 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +IDGLC+ GR +EA     ++ + G  +P  VTYN LI+G C+ G + EA  LL +M E 
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T++ GF      D A   L +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 44/239 (18%)

Query: 10  GNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            +F  Y   I G+CK++ ++ A       + KG   DV+ Y+++I+ LC  NRL EA + 
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER------------------ 103
            ++M  + +T  +VTY  LI D   K GR   A+ALL  + +                  
Sbjct: 69  LEEMANRNLTPNVVTYTVLI-DGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCK 127

Query: 104 -----DKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                + Y+L           +I  Y+ +I G C+  + ++A +  +QL  +G  P VVT
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y+ LI+GLCK+G + EA  L  +M + G C P++ ++N++I GF    + D A + L++
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK+  +D A        +KG+  DV  ++SL++GLC  NRL +AV +  +M
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +  +  + TYN ++ D + +  +    A    LE      N+  ++++I GLC+V R 
Sbjct: 318 RRKSCSPTVYTYNTIL-DGYCRANQLEE-ARKFMLEEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNT 185
            EA + +++   +   P VV Y  +I+GLC++  + EA ++  +M +E GC P+S +++T
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G       DRA  +++K
Sbjct: 436 LITGLCNAGMLDRARGYIEK 455


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 1   FDLTEQR-FKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           +DL E+  + G   +   Y   I G CK ++ D A++       +G   DV  YS LI+G
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 50  LCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE 107
           LC   RLKEA++LF +M+  G      VTYN LI   + + G+   AM LL+ +      
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS-GFCRMGKMDEAMNLLERMAETGSS 253

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++  Y+ +++G C++ R ++A   L+Q++ KGL P VVT+  L++GLC++  + +A  +
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L +M+ K C P   ++NT++ G+   N+ + A  F+ + M
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 11/203 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C++ ++D A+       + G   DV  Y++L+NG C   RL +A +L 
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +G+T ++VT+  L+ D   ++ R S A+ +L  + R      +  Y+ ++DG CR
Sbjct: 280 NQMTRKGLTPDVVTFTSLM-DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 338

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             + EEARK +  L E    P VV++NI+I GLCK     EA +L+ + + + C PD   
Sbjct: 339 ANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 396

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + TVI G   + + D A    +K
Sbjct: 397 YTTVIDGLCREKKVDEACRVYRK 419



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNR 55
           ++  +    N   Y + I+G+CK   +D A+      +K        Y+SLI+GLC   R
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAER 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +L ++MV  G   ++ TY  LI    + +    A+ + + L    +  ++  YS 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +IDGLC+ GR +EA     ++ + G  +P  VTYN LI+G C+ G + EA  LL +M E 
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T++ GF      D A   L +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 44/239 (18%)

Query: 10  GNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            +F  Y   I G+CK++ ++ A       + KG   DV+ Y+++I+ LC  NRL EA + 
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER------------------ 103
            ++M  + +T  +VTY  LI D   K GR   A+ALL  + +                  
Sbjct: 69  LEEMANRNLTPNVVTYTVLI-DGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCK 127

Query: 104 -----DKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                + Y+L           +I  Y+ +I G C+  + ++A +  +QL  +G  P VVT
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y+ LI+GLCK+G + EA  L  +M + G C P++ ++N++I GF    + D A + L++
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK+  +D A        +KG+  DV  ++SL++GLC  NRL +AV +  +M
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +  +  + TYN ++ D + +  +    A    LE      N+  ++++I GLC+V R 
Sbjct: 318 RRKSCSPTVYTYNTIL-DGYCRANQLEE-ARKFMLEEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNT 185
            EA + +++   +   P VV Y  +I+GLC++  + EA ++  +M +E GC P+S +++T
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G       DRA  +++K
Sbjct: 436 LVTGLCNAGMLDRARGYIEK 455


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 14/211 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+    +  N   Y   +NG+CK  +       I+S + KG+  DV  YS L++  C  +
Sbjct: 206 DMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 265

Query: 55  RLKEAVELFDKMVAQGITAEL-----VTYNPLIHDNWEKQGRF-SAMALLQTLERDKYEL 108
           R+ EA+EL   M ++G T  +     VT+N LI     K G F  A AL + +     + 
Sbjct: 266 RVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGAC-KAGNFEQASALFEEMVAKNLQP 324

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  +  +IDGLC+ G+ E AR  LD +   G+ P VVTYN L++GLCK G I EA + L
Sbjct: 325 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFL 384

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M   GC PDS ++ +++      + TD A
Sbjct: 385 EEMVSSGCVPDSITYGSLVYALCRASRTDDA 415



 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 14/200 (7%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y I +  +C+  +   A+        + G+   +  Y+++INGLC  N L   +ELF+++
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G   ++VTYN LI D+  K G    A  L   +       N+  YS++I+GLC+VGR
Sbjct: 64  VERGHHPDVVTYNTLI-DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122

Query: 126 WEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDST 181
            +EAR+ + +++ K   ++P ++TYN  ++GLCK+ M  EA +L+  +++      PD+ 
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 182 SFNTVIQGFLVKNETDRASS 201
           +F+T+I G     + D A S
Sbjct: 183 TFSTLIDGLCKCGQIDEACS 202



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 11/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E+    +   Y   I+ +CK  +++ A +       +G   +V  YS LINGLC   
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 55  RLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           R+ EA EL  +M  +   +   ++TYN  +    ++     A  L+++L      ++ + 
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 113 --YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +S +IDGLC+ G+ +EA    D +   G VP V+TYN L+NGLCK   +  A  ++  
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M +KG  PD  +++ ++  F   +  D A   L
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 110/212 (51%), Gaps = 14/212 (6%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   +   +   I+G+CK  +ID A       I  G   +V  Y++L+NGLC  ++++ A
Sbjct: 176 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 235

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV-----Y 113
             + + MV +G+T +++TY+ L+ D + K  R   A+ LL  +       N+ V     +
Sbjct: 236 HAMIESMVDKGVTPDVITYSVLV-DAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTF 294

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C+ G +E+A    +++  K L P V+T+  LI+GLCK G +  A  +L  M  
Sbjct: 295 NILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGN 354

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++N ++ G       + A  FL++
Sbjct: 355 LGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 386



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELF-DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y+ ++  LC       A+E+F  +M   G+   +VTYN +I+   +     + M L + L
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
               +  ++  Y+ +ID LC+ G  EEAR+    +S +G VP VVTY++LINGLCK G I
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 162 MEADKLLVQMKEKGC--FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA +L+ +M  K C   P+  ++N+ + G   ++ T  A   ++ 
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 14/207 (6%)

Query: 11  NFHVYGIRINGMCKIR------EIDSAIKKG---ICLDVFVYSSLINGLCTFNRLKEAVE 61
           N   Y   ++G+CK        E+  +++ G   +  D   +S+LI+GLC   ++ EA  
Sbjct: 143 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 202

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FD M+A G    ++TYN L++   +      A A+++++       ++  YS+++D  C
Sbjct: 203 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 262

Query: 122 RVGRWEEARKKLDQLSEKG-----LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +  R +EA + L  ++ +G     LVP  VT+NILI G CK G   +A  L  +M  K  
Sbjct: 263 KASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 322

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  +F  +I G     + + A   L
Sbjct: 323 QPDVMTFGALIDGLCKAGQVEAARDIL 349



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +  + +   +G  I+G+CK  ++++A          G+  +V  Y++L++GLC   
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++EA +  ++MV+ G   + +TY  L++          A+ L+  L+   ++ +   Y+
Sbjct: 376 RIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYN 435

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGL + G+ E+A   L+++  KG  P   T+    +GL + G +    +LL  +  K
Sbjct: 436 ILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAK 495

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+T+ ++++       + D   + +K+
Sbjct: 496 GMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK + +D A       + K +  +   Y+SLI+GLC   R+  A++L  ++ 
Sbjct: 415 YNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELH 474

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G  A+++TY  L+    + Q    A+AL   ++    + N   Y+ +IDGLC+  R +
Sbjct: 475 HRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLK 534

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A+K    +  KG    V TYN++I GLCK+GM+ EA  +  +M++ GC PD+ +F  +I
Sbjct: 535 NAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIII 594

Query: 188 QGFLVKNETDRASSFLKK 205
           +    K+E D+A   L +
Sbjct: 595 RSLFEKDENDKAEKLLHE 612



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ N   YG  +NG+CKI E   AIK       +    DV +Y+++I+GLC    
Sbjct: 228 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKL 287

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA + + +M ++GI  +++TY+ LI           A +LL  +       ++  Y++
Sbjct: 288 VNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTI 347

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+ +EA+  L  ++++G+ P VVTY+ L++G C  G +  A ++   M +  
Sbjct: 348 LIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTE 407

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P   S+N +I G       D A + L++
Sbjct: 408 VNPSVCSYNIMINGLCKGKSVDEAMNLLRE 437



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + ++ A         +GI  DV  YS+LI G C   +L  A  L ++M
Sbjct: 274 MYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEM 333

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             + I  ++ TY  LI D   K+G+   A  LL  + ++  + N+  YS ++DG C VG 
Sbjct: 334 TLKNINPDVYTYTILI-DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A++    + +  + P V +YNI+INGLCK   + EA  LL +M  K   P++ ++N+
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G         A   +K+
Sbjct: 453 LIDGLCKSGRITSALDLMKE 472



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 17/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK   I SA+        +G   DV  Y+SL++GLC    L +A+ LF
Sbjct: 446 NTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALF 505

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM  +GI     TY  LI D   K  R  +A  L Q +      +++  Y+++I GLC+
Sbjct: 506 MKMKERGIQPNKYTYTALI-DGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCK 564

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF----- 177
            G  +EA     ++ + G +P  VT+ I+I  L +K    +A+KLL +M  KG       
Sbjct: 565 EGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLHFRNF 624

Query: 178 --PDSTSFNTVIQGFLVKNETDRASSFL 203
               S   N VI  F  K ET + +++L
Sbjct: 625 HGERSPVTNKVIVNFHEK-ETLKPTAYL 651



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + ++  +       +K G   +  + ++L+ GLC    +K+++   DK+VAQ
Sbjct: 172 ILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQ 231

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V+Y  L++   +      A+ LL+ +E      ++ +Y+ +IDGLC+     EA
Sbjct: 232 GFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEA 291

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ +G+ P V+TY+ LI G C  G +M A  LL +M  K   PD  ++  +I  
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA 351

Query: 190 FLVKNETDRASSFL 203
              + +   A + L
Sbjct: 352 LCKEGKLKEAKNLL 365



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  +  + K++   +AI        KGI  D+   S LIN  C   ++  +  +  K++
Sbjct: 135 FGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKIL 194

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G     +    L+     K     ++     +    +++N   Y  +++GLC++G   
Sbjct: 195 KLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETR 254

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K L  + ++   P VV YN +I+GLCK  ++ EA     +M  +G FPD  +++T+I
Sbjct: 255 CAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLI 314

Query: 188 QGFLVKNETDRASSFLKK 205
            GF +  +   A S L +
Sbjct: 315 CGFCLAGQLMGAFSLLNE 332


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 121/212 (57%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICL-DVFVYSSLINGLCTFN 54
           +TE+ ++ N   Y   ++G+C  R++DSA++        G C  DVF YS++++ L    
Sbjct: 175 MTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSG 234

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A  L + MV++G +  +VTY+ L+H    K G+   A ALLQ + R     NI  Y
Sbjct: 235 KVDDACRLVEAMVSKGCSPNVVTYSSLLH-GLCKAGKLDEATALLQRMTRSGCSPNIVTY 293

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C++GR +EA   L+++ + G  P VVTY +L++  CK G   +A  L+  M E
Sbjct: 294 NTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE 353

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  P+  ++N+++  F  K+E +RA   L  
Sbjct: 354 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 385



 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 8/199 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK+ ++D A       I++G   +V  Y +L++G C    L  AVEL  KM 
Sbjct: 117 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIEVYSLVIDGLCRVGRW 126
            +G     +TYN ++H     +   SA+ L + +E       ++  YS ++D L + G+ 
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + ++ +  KG  P VVTY+ L++GLCK G + EA  LL +M   GC P+  ++NT+
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G       D A   L++
Sbjct: 297 IDGHCKLGRIDEAYHLLEE 315



 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 4/174 (2%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           +++  C++  +++ + KG   +V  YSSL++GLC   +L EA  L  +M   G +  +VT
Sbjct: 235 KVDDACRL--VEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVT 292

Query: 78  YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           YN +I D   K GR   A  LL+ +     + N+  Y++++D  C+ G+ E+A   ++ +
Sbjct: 293 YNTII-DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            EKG VP + TYN L++  CKK  +  A +LL  M +KGC P+  S+NTVI G 
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 8/205 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
           + E     N   Y   ++G+CK R  D A         K+G   D+  Y+++I+GLC   
Sbjct: 456 IQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSK 515

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+  A +LF +M++ G+  + VTY+ +I    + +    A  +L+ + ++ ++     Y 
Sbjct: 516 RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 575

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G  ++A + L  L  KG  P VVT++I I+ L K+G + +A +LL  M   
Sbjct: 576 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA 635

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ ++NT+++GF   + T+ A
Sbjct: 636 GLVPDTVTYNTLLKGFCDASRTEDA 660



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 12/211 (5%)

Query: 1   FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLING 49
           + L E+   G    N   Y + ++  CK  + + AI       +KG   ++F Y+SL++ 
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 369

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            C  + ++ A +L   M+ +G    +V+YN +I    +       + LL+ +  +    +
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 429

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  ++ +ID +C+  R + A +  + + E G  P +VTYN L++GLCK     +A+ LL 
Sbjct: 430 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLR 489

Query: 170 QM-KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M +++GC PD  ++NTVI G       DRA
Sbjct: 490 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 110/209 (52%), Gaps = 6/209 (2%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRL 56
           +  +  K +  V+   + G+C   +   A+       K    D   Y+++INGL   +RL
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            +A+ L ++MV  G    + +YN ++H   +     +A+ LL+ +       ++  Y+ V
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+GLC++ + +EA + +D++ ++G  P V+TY  L++G C+ G +  A +L+ +M E+G 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P++ ++N ++ G     + D A    K+
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKE 209



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+CK  ++   +             D+  ++++I+ +C   R+  A ELF
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 453

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCR 122
           + +   G T  LVTYN L+H   + +    A  LL+ + R +    +I  Y+ VIDGLC+
Sbjct: 454 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK 513

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A K   Q+   GL P  VTY+I+I+ LCK   + EA+ +L  M + G  P + +
Sbjct: 514 SKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT 573

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           + T+I GF      D+A   L+
Sbjct: 574 YGTLIDGFCKTGNLDKALEILQ 595



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T      N   Y   I+G CK+  ID A       +  G   +V  Y+ L++  C   +
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A+ L + MV +G    L TYN L+    +K     A  LL ++ +     N+  Y+ 
Sbjct: 341 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 400

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI GLC+  +  E    L+Q+     VP +VT+N +I+ +CK   +  A +L   ++E G
Sbjct: 401 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 460

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P+  ++N+++ G       D+A   L++
Sbjct: 461 CTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 490



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 10/191 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK + +D A K        G+  D   YS +I+ LC +  + EA  + + M
Sbjct: 503 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 562

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G     +TY  LI D + K G    A+ +LQ L       ++  +S+ ID L + GR
Sbjct: 563 LKNGFDPGAITYGTLI-DGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 621

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A + L+ +   GLVP  VTYN L+ G C      +A  L   M++ GC PD+ ++ T
Sbjct: 622 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTT 681

Query: 186 VIQGFLVKNET 196
           ++ G LV  ++
Sbjct: 682 LV-GHLVDKKS 691



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 10/195 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV-AQG 70
           I+ MCK   +D A +        G   ++  Y+SL++GLC   R  +A  L  +M   QG
Sbjct: 437 IDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG 496

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            + +++TYN +I D   K  R   A  L   +  D    +   YS+VI  LC+    +EA
Sbjct: 497 CSPDIITYNTVI-DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L+ + + G  PG +TY  LI+G CK G + +A ++L  +  KG +PD  +F+  I  
Sbjct: 556 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDW 615

Query: 190 FLVKNETDRASSFLK 204
              +    +A   L+
Sbjct: 616 LSKRGRLRQAGELLE 630


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I ING CK + ID A       I +G+  +   Y++LI+G C   +L+EA +
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M   G   +L TY+ L+ D + KQG    A  L + ++    + N+ +Y++++  +
Sbjct: 430 LFRNMCTNGNLPDLFTYSILL-DGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  ++ARK   +L  +GL P V  Y  +INGLCK+G++ EA +    M+  GC PD 
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+N +I+G L   +  RA
Sbjct: 549 ISYNVIIRGLLQHKDESRA 567



 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E   + N   Y   I+ +C+ R ++ A+        KGI  D+F Y+SLI GLC F+R
Sbjct: 224 MEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  L ++M +  I  ++VT+N L+ D + K+G+ S A+ +L+T+     E N+  YS
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLV-DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G        EARK    +  KG  P + +YNILING CK   I EA +L  +M  +
Sbjct: 343 SLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ 402

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P++ S+NT+I GF
Sbjct: 403 GLTPNNVSYNTLIHGF 418



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I +N  C+++ +D         IK G+   +  +++LINGLC      +AVELF
Sbjct: 127 NIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELF 186

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MVA+G   ++ TYN +I+   +     +A  LL+ +E    + N+  YS +ID LCR 
Sbjct: 187 DDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRD 246

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               EA      +  KG+ P + TY  LI GLCK     EA  LL +M      PD  +F
Sbjct: 247 RLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTF 306

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N ++  F  + +   A   LK
Sbjct: 307 NVLVDTFCKEGKVSEALGVLK 327



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK+ E        D  + KG   DV+ Y+++INGLC       A  L  KM   G 
Sbjct: 170 INGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGC 229

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTY+ LI      +    A+ +   ++      +I  Y+ +I GLC+  RW+EA  
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA 289

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            L++++   ++P +VT+N+L++  CK+G + EA  +L  M E G  P+  ++++++ G+
Sbjct: 290 LLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCTFN 54
           D+  +  + + + Y   ING+CKI E  +A   +KK    G   ++  YS+LI+ LC   
Sbjct: 188 DMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDR 247

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+++F  M A+GI+ ++ TY  LI    +      A ALL  +       +I  ++
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFN 307

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++D  C+ G+  EA   L  ++E G+ P VVTY+ L+ G      ++EA KL   M  K
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+  S+N +I G+      D A
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEA 392



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 35/158 (22%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I KG   ++F Y+ LING C   R+ EA++LF++M+ QG+T   V+YN LIH        
Sbjct: 365 ITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIH-------- 416

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                      G C++G+  EA+     +   G +P + TY+IL
Sbjct: 417 ---------------------------GFCQLGKLREAQDLFRNMCTNGNLPDLFTYSIL 449

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           ++G CK+G + +A +L   M+     P+   +  ++  
Sbjct: 450 LDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFN 54
           ++  Q    N   Y   I+G C++ ++  A  + + +C      D+F YS L++G C   
Sbjct: 398 EMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L +A  LF  M +  +   LV Y  L+H   +      A  L   L     + ++++Y+
Sbjct: 458 YLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYT 517

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+ G  +EA +    +   G  P  ++YN++I GL +      A  L+ +M+++
Sbjct: 518 TIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDR 577

Query: 175 GCFPD-STSFNTVIQG 189
           G   D     + V QG
Sbjct: 578 GFIADVRPCLSEVCQG 593



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS--AMALLQTLERDKYELN 109
           +F  + +A+  F+ M+ +     ++ +  L+     K G++    ++L + +E      N
Sbjct: 69  SFRNIDDALASFNHMLHRKPLPCIIQFAKLL-SAIVKMGQYYDVVISLSKQMELVGLSPN 127

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I   S+ ++  C++ R +     L ++ + GL P +VT+  LINGLCK G   +A +L  
Sbjct: 128 IYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFD 187

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            M  KGC PD  ++NT+I G     ET  A+  LKK
Sbjct: 188 DMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKK 223


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 113/197 (57%), Gaps = 10/197 (5%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRL-----KEAVELFDKMVAQ 69
           Y I ING CK + ID A +     D   +  LI    T+N L     K+ ++LF  M AQ
Sbjct: 83  YNILINGCCKAQRIDEAKQ---IFDEMSFRGLIPNTATYNTLLGGFWKQKIQLFKDMHAQ 139

Query: 70  GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G + +LVTY+  +H    KQG    A+ L + ++ +    ++ +Y+++ID +C+ G+ E+
Sbjct: 140 GCSPDLVTYSIFLH-GLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLED 198

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           AR+   +L  KGL+P V ++  +I+GLC++G++ EA K   QM+  GC PD  S+N +++
Sbjct: 199 ARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVR 258

Query: 189 GFLVKNETDRASSFLKK 205
           GFL  N   RA    ++
Sbjct: 259 GFLQNNGASRAEQLFQE 275



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   ++ L++ LC   ++ EA  +   M+ +G+    VTY+ L++    +   F A  + 
Sbjct: 9   DAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVF 68

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       ++  Y+++I+G C+  R +EA++  D++S +GL+P   TYN L+ G  K+
Sbjct: 69  NAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQ 128

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +     +L   M  +GC PD  +++  + G   +   D+A    ++
Sbjct: 129 KI-----QLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFRE 170



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           I  + VT+N L+ D   K+G+ S A  +++T+     E N   YS +++G     R  EA
Sbjct: 6   IMPDAVTFNILV-DTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEA 64

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           RK  + +  +G +P V++YNILING CK   I EA ++  +M  +G  P++ ++NT++ G
Sbjct: 65  RKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGG 124

Query: 190 F 190
           F
Sbjct: 125 F 125



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 41/59 (69%)

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++P  VT+NIL++ LCKKG I EA  ++  M EKG  P++ ++++++ G+L++N    A
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEA 64


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK R I+ AI         G+ LDV  +S+LI G C   R + A+ELF
Sbjct: 287 NVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELF 346

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M        L T   ++   ++ Q    A++L + +E+   ELNI  Y++V+DG+C  
Sbjct: 347 CTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSF 406

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G++ +AR+    L  KG+   VV Y  +I GLCK+G++ +A+ LL++M+E GC P+  ++
Sbjct: 407 GKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTY 466

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +++G L + +  R++ +L
Sbjct: 467 NVLVRGLLQRYDISRSTKYL 486



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 45/233 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK---------------------------- 33
            L +  ++ N + +G  ING+CK+ +   AI                             
Sbjct: 102 SLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKD 161

Query: 34  ---------------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
                          KGI  D+  Y+SLI+GLC+F R  EA  L   M+ +GI   + T+
Sbjct: 162 GMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTF 221

Query: 79  NPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           N L+ DN+ K+G+ S A  ++  +     E ++  Y+ VI G C + +  +A K  + + 
Sbjct: 222 NVLV-DNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMI 280

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            KGL+P VVTY+ LI+G CK   I +A  +L +M   G   D  +++T+I GF
Sbjct: 281 HKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGF 333



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 8/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + H   I IN +C ++        + +  K G+   V  +++LINGLC    +  A  
Sbjct: 39  KPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAAR 98

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGL 120
             D +   G  +   T+  +I+   +      A++ L+ +E      ++ + YS ++D L
Sbjct: 99  FADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSL 158

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G    A      ++ KG+ P +V YN LI+GLC  G   EA  LL  M  KG  P+ 
Sbjct: 159 CKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNV 218

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            +FN ++  F  + +  RA + +
Sbjct: 219 QTFNVLVDNFCKEGKISRAKTIM 241



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 58/113 (51%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A++L++       + ++   ++VI+ LC +         L  + + G+ P VVT+  LI
Sbjct: 25  TAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLI 84

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           NGLC +G +  A +    +++ G   +S +  T+I G     +T  A S+L+K
Sbjct: 85  NGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEK 137


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 1   FDLTEQR-FKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           +DL E+  + G   +   Y   I G CK ++ D A++       +G   DV  YS LI+G
Sbjct: 74  YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 133

Query: 50  LCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE 107
           LC   RLKEA++LF +M+  G      VTYN LI   + + G+   AM LL+ +      
Sbjct: 134 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI-SGFCRMGKMDEAMNLLERMAETGSS 192

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++  Y+ +++G C++ R ++A   L+Q++ KGL P VVT+  L++GLC++  + +A  +
Sbjct: 193 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHI 252

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L +M+ K C P   ++NT++ G+   N+ + A  F+ + M
Sbjct: 253 LGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM 292



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 11/203 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C++ ++D A+       + G   DV  Y++L+NG C   RL +A +L 
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +G+T  +VT+  L+ D   ++ R S A+ +L  + R      +  Y+ ++DG CR
Sbjct: 219 NQMTRKGLTPNVVTFTSLM-DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 277

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V + EEARK +  L E    P VV++NI+I GLCK     EA +L+ + + + C PD   
Sbjct: 278 VNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 335

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + TVI     + + D A    +K
Sbjct: 336 YTTVIDVLCREKKVDEACRVYRK 358



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+SLI+GLC   R  EA +L ++MV  G   ++ TY  LI    + +    A+ + + L
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 115

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGM 160
               +  ++  YS +IDGLC+ GR +EA     ++ + G  +P  VTYN LI+G C+ G 
Sbjct: 116 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA  LL +M E G  PD  ++ T++ GF      D A   L +
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 220



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 97/180 (53%), Gaps = 10/180 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK+  +D A        +KG+  +V  ++SL++GLC  NRL +AV +  +M
Sbjct: 197 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEM 256

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +  +  + TYN ++ D + +  +          E D    N+  ++++I GLC+V R 
Sbjct: 257 RRKSCSPTVYTYNTIL-DGYCRVNQLEEARKFMLEEMD-CPPNVVSFNIMIRGLCKVNRS 314

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNT 185
            EA + +++   +   P VV Y  +I+ LC++  + EA ++  +M +E GC P+S +++T
Sbjct: 315 SEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%)

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RW   R     + +   VP  VTYN LI+GLCK     EA  LL +M   GC PD  ++ 
Sbjct: 34  RWPGRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 93

Query: 185 TVIQGFLVKNETDRA 199
           T+I GF    ++D A
Sbjct: 94  TLITGFCKSKKSDDA 108


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+ + +D+A        +KG   +   Y++LI+GLC   R+ EA++LF  M
Sbjct: 231 TYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADM 290

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                   + TY  LI+       +  A+ L   ++    E N+  Y+++IDGLC+  + 
Sbjct: 291 TEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM 350

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK L ++SEKGL+P VVTYN LI+G CK+GMI +A ++L  M+   C P++ ++N +
Sbjct: 351 DEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNEL 410

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K +  +A + L K
Sbjct: 411 ICGLCKKRKVHKAMALLNK 429



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 114/246 (46%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC--- 51
           ++ E+  + N H Y + I+G+CK  ++D A K       KG+   V  Y++LI+G C   
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 52  ----------------------TFNRL----------KEAVELFDKMVAQGITAELVTYN 79
                                 T+N L           +A+ L +KM+ + ++  L+TYN
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYN 443

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LIH   +     SA  LL  +  +    +   YS+ ID LC+ GR EEA    D +  K
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK 503

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+    V Y  LI+G CK G I  A  LL +M    C P+S ++N +I+G   + +   A
Sbjct: 504 GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563

Query: 200 SSFLKK 205
           SS + K
Sbjct: 564 SSLVAK 569



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            +L   +   N + +   +NG CKI  +  A       ++ G+  D F Y+SLI G C  
Sbjct: 183 LELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             +  A E+F  M  +G     V+Y  LIH   E      A+ L   +  D     +  Y
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I  L   GR  EA    +++ EKG  P V TY +LI+GLCK+  + EA K+L +M E
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG  P   ++N +I G+  +   D A   L
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFEIL 392



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 44/245 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E++   +   Y   I+G CK+ +++SA +        G+  D + YS  I+ LC   R
Sbjct: 430 MLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGR 489

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA  LFD + A+G+ A  V Y  LI D + K G+   A +LL+ +  D    N   Y+
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALI-DGYCKVGKIDVAYSLLERMLNDACLPNSYTYN 548

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----------------- 157
           ++I+GLC+  + +EA   + ++   G+ P VVTY ILI  + K                 
Sbjct: 549 VLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 158 ------------------KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                             +GM+ E D ++ +M E+G  PD  ++  +I G+     T RA
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 200 SSFLK 204
             FLK
Sbjct: 669 FDFLK 673



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 1   FDLTEQRFKG-NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
            DL E    G N   Y   I G+CK R++  A       +++ +   +  Y+SLI+G C 
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
            N L+ A  L   M   G+  +  TY+  I D   K+GR   A  L  +++    + N  
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFI-DTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ +IDG C+VG+ + A   L+++     +P   TYN+LI GLCK+  + EA  L+ +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              G  P   ++  +I   L     D A
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHA 598



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E +FK     Y   +  + K   ID         +   I  +++ +++++NG C    + 
Sbjct: 152 EFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA     K+V  G+  +  TY  LI  +   +G  +A  +   + +   + N   Y+ +I
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC  GR  EA K    ++E    P V TY +LI  L   G  +EA  L  +MKEKGC 
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  ++  +I G   +N+ D A   L +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSE 359



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+G CK+ +ID A           CL + + Y+ LI GLC   ++KEA  
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L  KM+  G+   +VTY  LI +   K G F  A+ +   +    Y+ ++  Y+  +   
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEML-KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
              G  EE    + +++E+G++P +VTY +LI+G  + G+   A   L  M + GC P  
Sbjct: 625 FSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKP-- 682

Query: 181 TSFNTVIQGFLVKN 194
              +  I   L+KN
Sbjct: 683 ---SLYIVSILIKN 693



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G  +DV +Y +LI G C   RL+EA  L   M  +G++     YN L+ D   K G 
Sbjct: 729 VEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL-DCCCKLGV 787

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           ++ A+ L+  +  +     +E Y L++ GL   G  E+A+     L   G     V + +
Sbjct: 788 YAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKV 847

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LI+GL K+ ++ E  +L+  M+EKGC P+  +++ +I+G 
Sbjct: 848 LIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +YG  I G C+   ++ A        ++G+     +Y+SL++  C      EAV L D M
Sbjct: 739 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 798

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+   L +Y  L+   + +     A A+   L    Y  +   + ++IDGL +    
Sbjct: 799 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLV 858

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +E  + +D + EKG  P  +TY++LI GL
Sbjct: 859 DECSELIDIMEEKGCQPNPLTYSLLIEGL 887


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G C+ + +D+A        +KG   +   Y++LI+GLC   R+ EA++LF  M 
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMT 291

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                  + TY  LI+       +  A+ L   ++    E N+  Y+++IDGLC+  + +
Sbjct: 292 EDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD 351

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK L ++SEKGL+P VVTYN LI+G CK+GMI +A ++L  M+   C P++ ++N +I
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411

Query: 188 QGFLVKNETDRASSFLKK 205
            G   K +  +A + L K
Sbjct: 412 CGLCKKRKVHKAMALLNK 429



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 114/246 (46%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC--- 51
           ++ E+  + N H Y + I+G+CK  ++D A K       KG+   V  Y++LI+G C   
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 52  ----------------------TFNRL----------KEAVELFDKMVAQGITAELVTYN 79
                                 T+N L           +A+ L +KM+ + ++  L+TYN
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYN 443

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LIH   +     SA  LL  +  +    +   YS+ ID LC+ GR EEA    D +  K
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK 503

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+    V Y  LI+G CK G I  A  LL +M    C P+S ++N +I+G   + +   A
Sbjct: 504 GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563

Query: 200 SSFLKK 205
           SS + K
Sbjct: 564 SSLVAK 569



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            +L   +   N + +   +NG CKI  +  A       ++ G+  D F Y+SLI G C  
Sbjct: 183 LELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             +  A E+F  M  +G     V+Y  LIH   E      A+ L   +  D     +  Y
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I  L   GR  EA    +++ EKG  P V TY +LI+GLCK+  + EA K+L +M E
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG  P   ++N +I G+  +   D A   L
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFEIL 392



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 44/245 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E++   +   Y   I+G CK+ +++SA +        G+  D + YS  I+ LC   R
Sbjct: 430 MLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGR 489

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA  LFD + A+G+ A  V Y  LI D + K G+   A +LL+ +  D    N   Y+
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALI-DGYCKVGKIDVAYSLLERMLNDACLPNSYTYN 548

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----------------- 157
           ++I+GLC+  + +EA   + ++   G+ P VVTY ILI  + K                 
Sbjct: 549 VLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 158 ------------------KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                             +GM+ E D ++ +M E+G  PD  ++  +I G+     T RA
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 200 SSFLK 204
             FLK
Sbjct: 669 FDFLK 673



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 1   FDLTEQRFKG-NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
            DL E    G N   Y   I G+CK R++  A       +++ +   +  Y+SLI+G C 
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
            N L+ A  L   M   G+  +  TY+  I D   K+GR   A  L  +++    + N  
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFI-DTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ +IDG C+VG+ + A   L+++     +P   TYN+LI GLCK+  + EA  L+ +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              G  P   ++  +I   L     D A
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHA 598



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E +FK     Y   +  + K   ID         +   I  +++ +++++NG C    + 
Sbjct: 152 EFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA     K+V  G+  +  TY  LI  +   +G  +A  +   + +   + N   Y+ +I
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC  GR  EA K    ++E    P V TY +LI  L   G  +EA  L  +MKEKGC 
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  ++  +I G   +N+ D A   L +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSE 359



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+G CK+ +ID A           CL + + Y+ LI GLC   ++KEA  
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L  KM+  G+   +VTY  LI +   K G F  A+ +   +    Y+ ++  Y+  +   
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEML-KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
              G  EE    + +++E+G++P +VTY +LI+G  + G+   A   L  M + GC P  
Sbjct: 625 FSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKP-- 682

Query: 181 TSFNTVIQGFLVKN 194
              +  I   L+KN
Sbjct: 683 ---SLYIVSILIKN 693



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 33/210 (15%)

Query: 25  IREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           + E+D  I K    GI  D+  Y+ LI+G         A +    MV  G    L   + 
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 81  LI----HDNWEKQGRFS-------------------------AMALLQTLERDKYELNIE 111
           LI    H+N  K+ R                           A+ L + +      +++ 
Sbjct: 690 LIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVS 749

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y  +I G C+  R EEA+  +  + E+G+ P    YN L++  CK G+  EA +L+  M
Sbjct: 750 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 809

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            E G  P   S+  ++ G  ++   ++A +
Sbjct: 810 VENGLLPLLESYKLLVCGLYIEGSNEKAKA 839



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 75/145 (51%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A++LF+KMV  G T ++  Y  LI    +++    A  L+  ++      + ++Y+ ++D
Sbjct: 732 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 791

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C++G + EA + +D + E GL+P + +Y +L+ GL  +G   +A  +   +   G   
Sbjct: 792 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 851

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           D  ++  +I G L ++  D  S  +
Sbjct: 852 DEVAWKVLIDGLLKRDLVDECSELI 876



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G  +DV +Y +LI G C   RL+EA  L   M  +G++     YN L+ D   K G 
Sbjct: 740 VEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL-DCCCKLGV 798

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           ++ A+ L+  +  +     +E Y L++ GL   G  E+A+     L   G     V + +
Sbjct: 799 YAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKV 858

Query: 151 LINGLCKKGMIMEADKLLVQMKEK 174
           LI+GL K+ ++ E  +L+  M+EK
Sbjct: 859 LIDGLLKRDLVDECSELIDIMEEK 882



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +YG  I G C+   ++ A        ++G+     +Y+SL++  C      EAV L D M
Sbjct: 750 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 809

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+   L +Y  L+   + +     A A+   L    Y  +   + ++IDGL +    
Sbjct: 810 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLV 869

Query: 127 EEARKKLDQLSEK 139
           +E  + +D + EK
Sbjct: 870 DECSELIDIMEEK 882


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ING C+  ++  A+K       +G  +DV  Y++L+NGLC    L +A ELF +M
Sbjct: 401 IYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEM 460

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  +  T   LIH   +      A++L +T+     + ++  Y+ ++DG C+VG  
Sbjct: 461 VERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEM 520

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A++    +  + + P  ++++ILING C  G++ EA +L  +MKEKG  P   + NT+
Sbjct: 521 EKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTI 580

Query: 187 IQGFLVKNETDRASSFL 203
           I+G+L      +A+ FL
Sbjct: 581 IKGYLRAGNLSKANDFL 597



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   +N  C+   + E    +D    KG+   +F Y++LINGLC   
Sbjct: 249 EMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEG 308

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI------HDNWEKQ------------------- 89
             + A  + D+M+  G+     T+NP++       D WE +                   
Sbjct: 309 SYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFS 368

Query: 90  ---GRFS-------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              G FS       A+A  + ++      +  +Y+++I+G CR      A K  +++ E+
Sbjct: 369 SIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVER 428

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G V  VVTYN L+NGLC+  M+ +AD+L  +M E+G FPD  +  T+I G+       +A
Sbjct: 429 GCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKA 488

Query: 200 SSFLK 204
            S  +
Sbjct: 489 LSLFE 493



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T +  K +   Y   ++G CK+ E++ A       I + I      +S LING C+   
Sbjct: 495 MTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGL 554

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA  L+D+M  +GI   LVT N +I   + + G  S A   L T+  +    +   Y+
Sbjct: 555 VSEAFRLWDEMKEKGIKPTLVTCNTIIK-GYLRAGNLSKANDFLNTMISEGVPPDCITYN 613

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+   +   ++ A   ++ + E+GL+P +VTYN ++ G  + G + EA+ +L +M +K
Sbjct: 614 TLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDK 673

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD +++ ++I G++ K+    A
Sbjct: 674 GINPDKSTYTSLINGYVSKDNMKEA 698



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 94/174 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G  ++V+  + ++N LC   +L        +M  +G+ A+LVTYN L++    +   
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L+  +     +  +  Y+ +I+GLC+ G +E A++ LD++   GL P   T+N +
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPM 335

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   C+K  + EA+++  +M ++G  PD  SF++++  F    E  RA ++ +K
Sbjct: 336 LVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEK 389



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           +D+  +    ++  + I ING C +  +  A +       KGI   +   +++I G    
Sbjct: 528 YDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L +A +  + M+++G+  + +TYN LI+   +++    A  L+  +E      N+  Y
Sbjct: 588 GNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTY 647

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++ G  R GR +EA   L ++ +KG+ P   TY  LING   K  + EA ++  +M +
Sbjct: 648 NAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQ 707

Query: 174 KGCFPD 179
           +G  PD
Sbjct: 708 RGFVPD 713



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 84/174 (48%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  +  +++G+  D+  +SS++        L  A+  F+KM   G+  + V Y  LI+  
Sbjct: 350 RVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGY 409

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ +   +      +++  Y+ +++GLCR    ++A +   ++ E+G+ P  
Sbjct: 410 CRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDF 469

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            T   LI+G CK G + +A  L   M  +   PD  ++NT++ GF    E ++A
Sbjct: 470 YTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKA 523



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            Q L +  + ++I   + ++  + +VG  + A K  +   + G +  V T NI++N LCK
Sbjct: 177 FQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCK 236

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G +      L +M+EKG + D  ++NT++  +
Sbjct: 237 DGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAY 269


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L+ A ELF
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +  ++V+Y  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 446 QEMVSRRVRPDIVSYKILLDGLCDNGEPE---KALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ P V TYNI+I GLCKKG + EAD L  +M+E G  P+ 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L + +  +++  +++
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEE 587



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 42/232 (18%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING+C   ++ E    +D  ++ G    +   ++L+NGLC   ++ +AV L D+M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---- 122
           V  G     VTY P++    +      AM LL+ +E  K +L+   YS++IDGLC+    
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 123 -------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                           GRW++  K L  + ++ + P VV ++ L
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+   K+G + EA++L  +M ++G  PD+ ++ ++I GF  +N+ D+A+  L
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  F+ N   YG  +  MCK  +   A++       + I LD   YS +I+GLC    
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A  LF++M  +G  A+++ Y  LI   +   GR+   A LL+ + + K   ++  +S
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIR-GFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + G+  EA +   ++ ++G+ P  VTY  LI+G CK+  + +A+ +L  M  K
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FN +I G+   N  D      +K
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRK 412



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  ++D A       + KG   ++  ++ LING C  N + + +ELF KM
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM 413

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+ A+ VTYN LI    E      A  L Q +   +   +I  Y +++DGLC  G  
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A +  +++ +  +   +  YNI+I+G+C    + +A  L   +  KG  PD  ++N +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 534 IGGLCKKGSLSEADLLFRK 552



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 11/215 (5%)

Query: 1   FDLTEQ-RFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
            DL +Q   KG   N +   I IN  C+ R++  A       IK G   D   +S+LING
Sbjct: 92  LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   R+ EA+EL D+MV  G    L+T N L++          A+ L+  +    ++ N
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y  V+  +C+ G+   A + L ++ E+ +    V Y+I+I+GLCK G +  A  L  
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +M+ KG   D   + T+I+GF      D  +  L+
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 31/235 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +R + +   Y I ++G+C   E + A+       K  + LD+ +Y+ +I+G+C  +
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A +LF  +  +G+  ++ TYN +I    +K     A  L + +E D +  N   Y+
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLV----------------------PGVVTYNILI 152
           ++I      G   ++ K ++++   G                        P V T+  L+
Sbjct: 567 ILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLL 626

Query: 153 NGLC--KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              C  +   + +A  L   MK  G  P+  ++NTVI+G L  N   +    L +
Sbjct: 627 RPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQ 681



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           ++L  +M  +GI   L T + +I+     +    A + +  + +  YE +   +S +I+G
Sbjct: 92  LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GR  EA + +D++ E G  P ++T N L+NGLC  G + +A  L+ +M E G  P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  V++      +T  A   L+K
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRK 237



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 66/225 (29%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGL---------------- 50
           +Y I I+GMC   ++D A         KG+  DV  Y+ +I GL                
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553

Query: 51  ---------CTFN--------------------------------RLKEAVELFDKMVAQ 69
                    CT+N                                 L+ A+    +M+  
Sbjct: 554 EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKA 613

Query: 70  GITAELVTYNPLIHDNW--EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           G   ++ T+  L+      E    + A  L + ++   Y+ N+  Y+ VI GL       
Sbjct: 614 GHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMIS 673

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +    LDQ+ E+G  P  VT +  I+GLCK+ +   A  LL +M+
Sbjct: 674 QVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKME 718


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L+ A ELF
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +  ++V+Y  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 446 QEMVSRRVRPDIVSYKILLDGLCDNGEPE---KALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ P V TYNI+I GLCKKG + EAD L  +M+E G  P+ 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L + +  +++  +++
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEE 587



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 42/232 (18%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING+C   ++ E    +D  ++ G    +   ++L+NGLC   ++ +AV L D+M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---- 122
           V  G     VTY P++    +      AM LL+ +E  K +L+   YS++IDGLC+    
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 123 -------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                           GRW++  K L  + ++ + P VV ++ L
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+   K+G + EA++L  +M ++G  PD+ ++ ++I GF  +N+ D+A+  L
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  F+ N   YG  +  MCK  +   A++       + I LD   YS +I+GLC    
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A  LF++M  +G  A+++ Y  LI   +   GR+   A LL+ + + K   ++  +S
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIR-GFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + G+  EA +   ++ ++G+ P  VTY  LI+G CK+  + +A+ +L  M  K
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FN +I G+   N  D      +K
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRK 412



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  ++D A       + KG   ++  ++ LING C  N + + +ELF KM
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM 413

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+ A+ VTYN LI    E      A  L Q +   +   +I  Y +++DGLC  G  
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A +  +++ +  +   +  YNI+I+G+C    + +A  L   +  KG  PD  ++N +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 534 IGGLCKKGSLSEADLLFRK 552



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 11/215 (5%)

Query: 1   FDLTEQ-RFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
            DL +Q   KG   N +   I IN  C+ R++  A       IK G   D   +S+LING
Sbjct: 92  LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   R+ EA+EL D+MV  G    L+T N L++          A+ L+  +    ++ N
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y  V+  +C+ G+   A + L ++ E+ +    V Y+I+I+GLCK G +  A  L  
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +M+ KG   D   + T+I+GF      D  +  L+
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           ++L  +M  +GI   L T + +I+     +    A + +  + +  YE +   +S +I+G
Sbjct: 92  LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GR  EA + +D++ E G  P ++T N L+NGLC  G + +A  L+ +M E G  P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  V++      +T  A   L+K
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRK 237



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 42/193 (21%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +R + +   Y I ++G+C   E + A+       K  + LD+ +Y+ +I+G+C  +
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A +LF  +  +G+  ++ TYN                                   
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYN----------------------------------- 531

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA     ++ E G  P   TYNILI     +G   ++ KL+ ++K  
Sbjct: 532 IMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRC 591

Query: 175 GCFPDSTSFNTVI 187
           G   D+++   V+
Sbjct: 592 GFSVDASTVKMVV 604


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING CK R +D A         K +  D   YS+L+ GLC   R KEA+ LF +
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKE 433

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M + G    LVTY  L+ D + K G    A+ LL++++  K E NI  Y+++I+G+   G
Sbjct: 434 MCSYGPHPNLVTYVILL-DGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAG 492

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + E A++   +L   G  P + TY ++I GL K+G+  EA  L  +M++ G  P+S S+N
Sbjct: 493 KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYN 552

Query: 185 TVIQGFLVKNETDRA 199
            +IQGFL   ++  A
Sbjct: 553 VMIQGFLQNQDSSTA 567



 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 9/190 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+ +CK R ++ A       +++GI  +VF Y+S+++G C   +L EA  
Sbjct: 230 KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATR 289

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +MV + +    VT+  L+ D   K+G  S A  + +T+     E +I  Y+ ++DG 
Sbjct: 290 LFKEMVGRDVMPNTVTFTILV-DGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGY 348

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C      EA+K  + +  KG  PG  +YNILING CK   + EA  LL +M  K   PD+
Sbjct: 349 CLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDT 408

Query: 181 TSFNTVIQGF 190
            +++T++QG 
Sbjct: 409 VTYSTLMQGL 418



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 106/191 (55%), Gaps = 7/191 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   N +   I IN +C++  +D ++       K GI  D   +++LINGLC   ++KEA
Sbjct: 123 RVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEA 182

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           VELF++MV +G    +++Y  +I+   +      A+ + + +E++  + N+  YS +ID 
Sbjct: 183 VELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDS 242

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+     +A + L ++ E+G+ P V TYN +++G C  G + EA +L  +M  +   P+
Sbjct: 243 LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302

Query: 180 STSFNTVIQGF 190
           + +F  ++ G 
Sbjct: 303 TVTFTILVDGL 313



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ++G+CK   +  A        +KG+  D+  Y++L++G C    + EA ++F+ M
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G      +YN LI+   + +    A +LL  +       +   YS ++ GLC++GR 
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA     ++   G  P +VTY IL++G CK G + EA KLL  MKEK   P+   +  +
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTIL 484

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G  +  + + A     K
Sbjct: 485 IEGMFIAGKLEVAKELFSK 503



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           N +C    + +A+  F +MV       +V +   +    +K+   + ++L   ++  +  
Sbjct: 70  NNVC----VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVT 125

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+   +++I+ LCR+   + +   L ++ + G+ P  +T+N LINGLC +G I EA +L
Sbjct: 126 HNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVEL 185

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +M ++G  P+  S+ TVI G      T  A    KK
Sbjct: 186 FNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKK 223



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G CK   +D A+K       K +  ++  Y+ LI G+    +L+ A ELF
Sbjct: 442 NLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELF 501

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+   G   ++ TY  +I    ++     A  L + +E D +  N   Y+++I G  + 
Sbjct: 502 SKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 561

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                A + +D++  K     + T+ +L++
Sbjct: 562 QDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E++ + N   Y I I GM    +++ A          G   D+  Y+ +I GL     
Sbjct: 469 MKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGL 528

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +LF KM   G      +YN +I    + Q   +A+ L+  +   ++ +N+  + +
Sbjct: 529 SDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQM 588

Query: 116 VID 118
           ++D
Sbjct: 589 LLD 591


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 8/213 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD +  +  + N   Y I ING  + ++ID A++       KG+   +   + L++GL  
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R K A   FD+M++ G   +L T+  L+   ++      AM+    LER + + NI++
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ VIDGLC+ G+ ++A    ++L   GL P V+TY  +I+G C++G++ EA  +L +M+
Sbjct: 461 YTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + GC  D+ ++N +++GFL  N+     +FL++
Sbjct: 521 DNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEE 553



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 3/170 (1%)

Query: 32  IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           +++ IC  +  +Y +++NGLC     ++A +L  +++ QG T        ++ D + K G
Sbjct: 169 VRENICEPNEVMYGTVMNGLCKKGHTQKAFDLL-RLMEQGSTKPNTCIYSIVIDAFCKDG 227

Query: 91  RFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A +LL  +++     +I  YS +ID LC++ +WE  R    ++    + P V T+N
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFN 287

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +I+GLCK+G + +A++++  M EKG  PD  ++N +I G+ ++ + DRA
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRA 337



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 25/202 (12%)

Query: 14  VYGIRINGMCKIREIDSAI-----------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           +YG  +NG+CK      A            K   C    +YS +I+  C    L  A  L
Sbjct: 180 MYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTC----IYSIVIDAFCKDGMLDGATSL 235

Query: 63  FDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            ++M  + I  ++ TY+ LI        WE          L+ +  + Y  N+  ++ VI
Sbjct: 236 LNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTL----FLEMIHLNIYP-NVCTFNSVI 290

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+ G+ E+A + +  + EKG+ P V+TYN++I+G   +G +  A ++   M  K   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P+  S+N +I G+  + + D A
Sbjct: 351 PNIISYNILINGYARQKKIDEA 372



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK  +++ A       I+KG+  DV  Y+ +I+G     ++  A E+FD M+ + I
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +++YN LI+    ++    AM + + + +   + +I   ++++ GL  +GR + A+ 
Sbjct: 350 EPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQN 409

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D++   G +P + T+  L+ G  K G++ EA     +++ +    +   +  VI G  
Sbjct: 410 FFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC 469

Query: 192 VKNETDRASSFLKK 205
              + D+A +  +K
Sbjct: 470 KNGKLDKAHATFEK 483



 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           L  +R   N  +Y   I+G+CK  ++D A          G+  DV  Y+++I+G C    
Sbjct: 449 LERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGL 508

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
           L EA ++  KM   G  A+  TYN ++   + +  + S M A L+ +    +        
Sbjct: 509 LDEAKDMLRKMEDNGCLADNRTYNVIVR-GFLRSNKVSEMKAFLEEIAGKSFSFEAATVE 567

Query: 115 LVID 118
           L++D
Sbjct: 568 LLMD 571



 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 60/115 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++ +Y+++I+GLC   +L +A   F+K+   G+  +++TY  +I    ++     A  +L
Sbjct: 457 NIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDML 516

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           + +E +    +   Y++++ G  R  +  E +  L++++ K       T  +L++
Sbjct: 517 RKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 36/186 (19%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  LF +MV       +V+++ L+      +   S ++L + + + +  ++  + S+
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLV--------------------------------- 142
           V++  C + R +     L    +KG+                                  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 143 ---PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P  V Y  ++NGLCKKG   +A  LL  M++    P++  ++ VI  F      D A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGA 232

Query: 200 SSFLKK 205
           +S L +
Sbjct: 233 TSLLNE 238


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 112/192 (58%), Gaps = 10/192 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F     ++ + ING CK +++DSA       I+KG   +VF ++ LI GLC  NR+ EA 
Sbjct: 180 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 239

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L +KMV  G +  +VTY+ +I +   KQG+   A  L Q +ER     N+  ++++IDG
Sbjct: 240 QLLEKMVTGGCSPNVVTYSTVI-NGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDG 298

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFP 178
           LC+  R EEAR+   ++ E G  P ++TYN LI+GLCK   + EA +L   + E G    
Sbjct: 299 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 179 DSTSFNTVIQGF 190
           ++ +++T+  G+
Sbjct: 359 NAVTYSTLFHGY 370



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 101/185 (54%), Gaps = 8/185 (4%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCT-FNRLKEAVELFDK 65
            +   I+G+CK        R ++  I++G+      + ++I  LC  +N ++ A ++   
Sbjct: 115 TFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGV 174

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           ++A+G T  ++ +N +I+   + +   SA  LL+ +       N+  ++++I GLC+  R
Sbjct: 175 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 234

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA++ L+++   G  P VVTY+ +INGLCK+G + +A +L   M+ + C P+  + N 
Sbjct: 235 VGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNI 294

Query: 186 VIQGF 190
           +I G 
Sbjct: 295 LIDGL 299



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKI-REIDS-----AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           F+GN  V+   + G+C   R +++     A+ K    DV  Y++L++ LC   +  EA  
Sbjct: 40  FEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQG 99

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +M+A+G   + VT++ LI    +      A  +L+ + +     +   +  +I  LC
Sbjct: 100 MLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLC 159

Query: 122 -RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +    E A K L  +  KG  P V+ +N++ING CK   +  A KLL  M EKGC P+ 
Sbjct: 160 NKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNV 219

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F  +I G    N    A   L+K
Sbjct: 220 FTFTILITGLCKANRVGEAQQLLEK 244



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+CK  ++D A        ++    +V  ++ LI+GLC   R++EA +L+
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLVIDGLCR 122
            +M   G   +++TYN LI    +      A  L QT+ E      N   YS +  G   
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +GR  +A +    L +KG  P + TY  LI   CK    +E  +L+ +M  KG  P   +
Sbjct: 373 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 432

Query: 183 FNTVIQGFLVKNETDRA 199
            + V+ G    N T+RA
Sbjct: 433 LSAVLGGLFEGNHTERA 449



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 11/215 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           F L E+R    N   + I I+G+CK + I+ A +        G   D+  Y+SLI+GLC 
Sbjct: 277 FQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 336

Query: 53  FNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNI 110
             ++ EA +LF  +   G++ A  VTY+ L H  +   GR +    + ++  DK +  ++
Sbjct: 337 SFQVDEAFQLFQTIPESGVSAANAVTYSTLFH-GYAALGRMADACRIFSMLVDKGFSPDL 395

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ +I   C+  R  E  + +++++ KG  P V T + ++ GL +      A +L   
Sbjct: 396 ATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDS 455

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +GC  D+  +N V++G    ++ ++A + L++
Sbjct: 456 MAARGCTDDALIYNLVVEGMARASKHNKALAVLEQ 490



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 38/211 (18%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            KG    V   S+++ GL   N  + A++LFD M A+G T + + YN ++          
Sbjct: 423 SKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHN 482

Query: 93  SAMALLQTL--ERDK------------------------------------YELNIEVYS 114
            A+A+L+ +  +RD+                                    +   +  Y+
Sbjct: 483 KALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYN 542

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL R+ RW+EA +  + +   G  P + T N++I+ LC    + +A +L+ +M + 
Sbjct: 543 GLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKL 602

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  + NT+I G+      D A   L++
Sbjct: 603 GCCPDIETCNTLIGGYCKSGRADLARKLLEE 633



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 36  ICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           IC+ + F Y  LI G  +   L  A++L ++M + G     V +  L+    +      A
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +   + + +D    ++  Y+ ++  LC+ G+++EA+  L ++  +G  P  VT++ LI+G
Sbjct: 64  LEHFRAMAKDCAP-DVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK-NETDRASSFL 203
           LCK G   +A ++L  + ++G      +F T+IQ    K N  + AS  L
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVL 172



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
           +L+  LC   R  +A +L  KM  +G  A + +YN L+      Q    A  + + +   
Sbjct: 508 ALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSA 567

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                I   ++VI  LC   + ++A + + ++S+ G  P + T N LI G CK G    A
Sbjct: 568 GPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLA 627

Query: 165 DKLLVQMKEKGCFPDSTSFN 184
            KLL +M E G  P+ T+ +
Sbjct: 628 RKLLEEMTEAGLEPNDTTHD 647



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D  +++F  +       +  +C++   D A        ++G    V  Y+ L++GL   
Sbjct: 492 IDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRL 551

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R  EA ++F+ MV+ G   E+ T N +I           A  L+Q + +     +IE  
Sbjct: 552 QRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETC 611

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + +I G C+ GR + ARK L++++E GL P   T+++L
Sbjct: 612 NTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CK   +  A K       K I   V  Y++L+ GL    ++++A  LF +M 
Sbjct: 381 YNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMK 440

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              +T E  TYN L+ D   K    S AM L   LE   ++ +I++++ +IDGLC+  + 
Sbjct: 441 VHDLTPESCTYNILL-DGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR+  ++LS +GL P V+TY ++I+GLCK G +  A  L + M+EKGC P+  +FNT+
Sbjct: 500 EIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTL 559

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++GF   +E  +    L++
Sbjct: 560 MRGFCQNDEMQKVVELLQE 578



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 48/237 (20%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F    I IN  C + ++D         +++G   +   ++SL+ GLC  +R+ EA  L 
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185

Query: 64  DKMVAQGITAELVTYNPLIH----------------DNWEKQGRFSAM---------ALL 98
            KMV  G    +VTY  L++                +     G F             ++
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245

Query: 99  QTLERDKY-----ELNIEV-----------YSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
            +L +D       EL +E+           YS +I G+C  GRWE A+   +++ ++G+ 
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           P VVT+N+LI+ LCK G + EA+ LL  M ++G  PD+ ++NT+I GF ++   D A
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDA 362



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKK-----------GICL--DVFVYSSLINGLCTFN 54
           ++ N   YG  +NG+C       A+K            G+ +  ++  Y ++I+ LC   
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDG 252

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +  ELF +M  +GI+ ++V Y+ +IH          A  L   +  +    N+  ++
Sbjct: 253 LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFN 312

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID LC+ G+ EEA   L  + ++G  P   TYN LI+G C +G I +A  L V M+ K
Sbjct: 313 VLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESK 372

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D+ S+N +I G+
Sbjct: 373 GIETDAVSYNVLINGY 388



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+GMC     + A       + +G+  +V  ++ LI+ LC   +++EA  L   M
Sbjct: 275 AYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLM 334

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G + +  TYN LI D +  +GR   A  L  ++E    E +   Y+++I+G C+ GR
Sbjct: 335 IQRGESPDTFTYNTLI-DGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA+K   ++  K ++P V+TYN L+ GL ++G + +A  L  +MK     P+S ++N 
Sbjct: 394 MVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNI 453

Query: 186 VIQGFLVKNETDRA 199
           ++ G    N    A
Sbjct: 454 LLDGLCKNNHLSEA 467



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   + + I+ +CK  +++ A       I++G   D F Y++LI+G C   
Sbjct: 298 EMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEG 357

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R+ +A +LF  M ++GI  + V+YN LI + + K GR   A  L + +   +    +  Y
Sbjct: 358 RIDDARDLFVSMESKGIETDAVSYNVLI-NGYCKSGRMVEAKKLYREMMCKEIMPTVITY 416

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++ GL R G+  +A     ++    L P   TYNIL++GLCK   + EA +L   ++ 
Sbjct: 417 NTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLEN 476

Query: 174 KGCFPDSTSFNTVIQGF 190
               P    FN +I G 
Sbjct: 477 HDFQPSIQIFNCLIDGL 493



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 43/192 (22%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G+CK   +  A++    L+       + +++ LI+GLC   +++ A ELF+++
Sbjct: 450 TYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRL 509

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   ++TY  +IH                                   GLC+ G+ 
Sbjct: 510 SHEGLEPNVITYTVMIH-----------------------------------GLCKSGQL 534

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A+     + EKG  P +VT+N L+ G C+   + +  +LL +M EK   PD+++ + V
Sbjct: 535 ENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIV 594

Query: 187 IQGFLVKNETDR 198
           +   L K+E  R
Sbjct: 595 VD-LLSKDEKYR 605



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D    + LIN  C  N++   + +  +M+ +G +   VT+  L+           A
Sbjct: 122 GLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEA 181

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ-LSEKG-----LVPGVVTY 148
             LL+ + R  Y  N+  Y  +++GLC  G    A K  ++ L+  G     + P +V Y
Sbjct: 182 TGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCY 241

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +I+ LCK G+I +  +L ++MK +G  PD  +++++I G 
Sbjct: 242 CTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGM 283



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +++L+  +    R  + + L+ +M   G+  + +T N LI+           +A+L  + 
Sbjct: 95  FNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEML 154

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R  +  N   ++ ++ GLC   R  EA   L ++   G  P VVTY  L+NGLC  G  M
Sbjct: 155 RRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTM 214

Query: 163 EADKLLVQM 171
            A KL  +M
Sbjct: 215 LAVKLHEEM 223



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L    F+ +  ++   I+G+CK R+I+ A         +G+  +V  Y+ +I+GLC   +
Sbjct: 474 LENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQ 533

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ A +LF  M  +G    LVT+N L+    +       + LLQ +    +  +    S+
Sbjct: 534 LENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISI 593

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKG 140
           V+D L +  ++ E    L     +G
Sbjct: 594 VVDLLSKDEKYREYLHLLPTFPAQG 618



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 64/139 (46%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA  +F+ ++    T  + ++N L+    + +  F  ++L + +       +    +++I
Sbjct: 75  EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +  C + + +     L ++  +G  P  VT+  L+ GLC    I EA  LL +M   G  
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYR 194

Query: 178 PDSTSFNTVIQGFLVKNET 196
           P+  ++ T++ G  +   T
Sbjct: 195 PNVVTYGTLLNGLCMTGNT 213



 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 49/96 (51%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  ++ ++  + ++ R+ +      ++S  GL P  +T NILIN  C    +     +L 
Sbjct: 92  ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLG 151

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +M  +G  P++ +F ++++G  + +    A+  L+K
Sbjct: 152 EMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRK 187


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 16/203 (7%)

Query: 19  INGMCKI---------REIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           +NG CK+          +++SA        KKG   +   Y++LI+GLC   R+ E + +
Sbjct: 2   VNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINI 61

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F KM        + TY  ++H  +E   R  A+ L   +     E NI  Y+++I+ +C+
Sbjct: 62  FKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCK 121

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             + EE R+ LD++ EKGLVP V TYN LI+G CK+GM+  A ++L  M    C P+  +
Sbjct: 122 ETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERT 181

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +I GF  K    RA + L K
Sbjct: 182 YNELICGFCRKKNVHRAMALLSK 204



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + N H Y + IN MCK        R +D  ++KG+   V  Y++LI+G C   
Sbjct: 99  EMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEG 158

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A E+ D M +        TYN LI     K+    AMALL  +   +   ++  Y+
Sbjct: 159 MVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYN 218

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C++G  + A + L+ ++E G+VP   TY++ I+ LCKKG I EA+ L   +KEK
Sbjct: 219 SLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK 278

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   +   +  +I G+    + D A+S L +
Sbjct: 279 GIKANEVIYTALIDGYCKAGKMDDANSLLDR 309



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E R   +   Y   I+G CKI  +DSA +        G+  D + YS  I+ LC   R
Sbjct: 205 MLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGR 264

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA  LF+ +  +GI A  V Y  LI D + K G+   A +LL  +  +    N   Y+
Sbjct: 265 IEEANVLFNSLKEKGIKANEVIYTALI-DGYCKAGKMDDANSLLDRMLTEDCLPNSSTYN 323

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+  + +EA   ++ + +KGL   V TY ILI  + K+G    A ++L QM   
Sbjct: 324 ALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSS 383

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD   +   I  F  +     A   +
Sbjct: 384 GYQPDVYIYTAFIHAFCTRGNIKEAEDMM 412



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +CK   I+ A        +KGI  +  +Y++LI+G C   ++ +A  L D+M
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +       TYN LI    +++    A+ L++++ +   +  +  Y+++I  + + G +
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + LDQ+   G  P V  Y   I+  C +G I EA+ ++  M E+G  PD+ ++  V
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 187 IQGF 190
           I  +
Sbjct: 431 IDAY 434



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E+  K N  +Y   I+G CK  ++D A       + +    +   Y++LI+GLC   +
Sbjct: 275 LKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERK 334

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA+ L + M+ +G+   + TY  LI     K+G F  A  +L  +    Y+ ++ +Y+
Sbjct: 335 VQEALLLMESMIQKGLKCTVPTYTILIVAML-KEGDFDYAHRILDQMVSSGYQPDVYIYT 393

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I   C  G  +EA   +  + E+G++P  +TY ++I+     G++  A  +L +M + 
Sbjct: 394 AFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDT 453

Query: 175 GCFPDSTSFNTVIQGFL 191
           GC P   +++ +I+  L
Sbjct: 454 GCDPSHHTYSCLIKHLL 470



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 36/228 (15%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ + ++Y   I+  C    I  A        ++G+  D   Y+ +I+       L  A 
Sbjct: 385 YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAF 444

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----------------------------DNWEKQGR 91
           ++  +M   G      TY+ LI                              D W+    
Sbjct: 445 DVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKF 504

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ L + +       NI  Y+ +I GLC+VGR   A+K  D ++E+G+ P    YN L
Sbjct: 505 ETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSL 564

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N  C+ G+  +A +L+  M E G  P   S N +  G   +   ++A
Sbjct: 565 LNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKA 612



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   ++  Y+ LI GLC   RL  A +LFD M  +G++     YN L++   E    
Sbjct: 515 LEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIY 574

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L+  +    +   +E  +++  GL   G  E+A+     L + G     V + IL
Sbjct: 575 GDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKIL 634

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+GL K G+     +LL  M+ +GC     ++  +I+G 
Sbjct: 635 IDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N + Y   I G+CK+  +  A K       +G+     +Y+SL+N  C    
Sbjct: 514 MLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGI 573

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +AV L   M+  G    L + N L    +E+  +  A  +   L +  Y  +   + +
Sbjct: 574 YGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKI 633

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +IDGL + G  +   + L  +  +G      TY +LI GL
Sbjct: 634 LIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
 gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 18/202 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING CK   ID A +       +G+  +   Y++LI+GL    R+ EA ELF
Sbjct: 9   NVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKELF 68

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M AQG + +LVTY+ L+ D   KQ           ++ +    ++ +Y+++ID +C+ 
Sbjct: 69  KDMHAQGCSPDLVTYSILL-DGLSKQ----------EMQNNYLNPDLVIYNILIDAMCKS 117

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+AR+   +L  KGL+P V ++  +I+GLC++G++ EA K   QM+  GC PD  S+
Sbjct: 118 GKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSY 177

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +++GFL  N   RA    ++
Sbjct: 178 NVIVRGFLQNNGASRAEQLFQE 199



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +G +P V++YNILING CK   I EA +L  +M  +G  P++ S+NT+I G  
Sbjct: 4   QGCMPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLF 56



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 3   LTEQRFKGNFH-----VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGL 50
           L++Q  + N+      +Y I I+ MCK  +++ A +       KG+  DV  ++S+I+GL
Sbjct: 90  LSKQEMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGL 149

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           C    L EA + F +M   G   +  +YN ++    +  G   A  L Q +
Sbjct: 150 CREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEM 200


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 115/198 (58%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING  + ++ID A++       KG+   +   + L++GL    R K A   FD+M+
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G   +L T+  L+   ++      AM+    LER + + NI++Y+ VIDGLC+ G+ +
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLD 475

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    ++L   GL P V+TY  +I+G C++G++ EA  +L +M++ GC  D+ ++N ++
Sbjct: 476 KAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIV 535

Query: 188 QGFLVKNETDRASSFLKK 205
           +GFL  N+     +FL++
Sbjct: 536 RGFLRSNKVSEMKAFLEE 553



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 3/170 (1%)

Query: 32  IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           +++ IC  +  +Y +++NGLC     ++A +L  +++ QG T        ++ D + K G
Sbjct: 169 VRENICEPNEVMYGTVMNGLCKKGHTQKAFDLL-RLMEQGSTKPNTRTYTIVIDAFCKDG 227

Query: 91  RFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A +LL  +++     +I  YS +ID LC++ +WE  R    ++    + P V T+N
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFN 287

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +I+GLCK+G + +A++++  M EKG  PD  ++N +I G+ ++ + DRA
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRA 337



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 42/198 (21%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I I+  CK   +D A        +K I  D+F YS+LI+ LC  ++ +    
Sbjct: 210 KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +M+   I   + T+N                                    VIDGLC
Sbjct: 270 LFLEMIHLNIYPNVCTFNS-----------------------------------VIDGLC 294

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ E+A + +  + EKG+ P V+TYN++I+G   +G +  A ++   M  K   PD  
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDII 354

Query: 182 SFNTVIQGFLVKNETDRA 199
           S+N +I G+  + + D A
Sbjct: 355 SYNILINGYARQKKIDEA 372



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 100/194 (51%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK  +++ A       I+KG+  DV  Y+ +I+G     ++  A E+FD M+ + I
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++++YN LI+    ++    AM + + + +   + +I   ++++ GL  +GR + A+ 
Sbjct: 350 EPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQN 409

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D++   G +P + T+  L+ G  K G++ EA     +++ +    +   +  VI G  
Sbjct: 410 FFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC 469

Query: 192 VKNETDRASSFLKK 205
              + D+A +  +K
Sbjct: 470 KNGKLDKAHATFEK 483



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  LF +MV       + +++ L+      +   S ++L + + + +  ++  + S+
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEK 174
           V++  C + R +     L    +KG+    VT+  LI GL  +  + +A  L  ++ +E 
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            C P+   + TV+ G   K  T +A   L+
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLR 202



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           L  +R   N  +Y   I+G+CK  ++D A          G+  DV  Y+++I+G C    
Sbjct: 449 LERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGL 508

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
           L EA ++  KM   G  A+  TYN ++   + +  + S M A L+ +    +        
Sbjct: 509 LDEAKDMLRKMEDNGCLADNRTYNVIVR-GFLRSNKVSEMKAFLEEIAGKSFSFEAATVE 567

Query: 115 LVID 118
           L++D
Sbjct: 568 LLMD 571



 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 60/115 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++ +Y+++I+GLC   +L +A   F+K+   G+  +++TY  +I    ++     A  +L
Sbjct: 457 NIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDML 516

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           + +E +    +   Y++++ G  R  +  E +  L++++ K       T  +L++
Sbjct: 517 RKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 34/165 (20%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F+ S ++N  C  +R      +      +GI    VT+  LI   + +     A+ L + 
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKK 167

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           L R+               +C                     P  V Y  ++NGLCKKG 
Sbjct: 168 LVRE--------------NICE--------------------PNEVMYGTVMNGLCKKGH 193

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +A  LL  M++    P++ ++  VI  F      D A+S L +
Sbjct: 194 TQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNE 238


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 112/192 (58%), Gaps = 10/192 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F     ++ + ING CK +++DSA       I+KG   +VF ++ LI GLC  NR+ EA 
Sbjct: 228 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 287

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L +KMV  G +  +VTY+ +I +   KQG+   A  L Q +ER     N+  ++++IDG
Sbjct: 288 QLLEKMVMGGCSPNVVTYSTVI-NGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDG 346

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFP 178
           LC+  R EEAR+   ++ E G  P ++TYN LI+GLCK   + EA +L   + E G    
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 179 DSTSFNTVIQGF 190
           ++ +++T+  G+
Sbjct: 407 NAVTYSTLFHGY 418



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKI-REIDS-----AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           F+GN  V+   + G+C   R +++     A+ K    DV  Y++L++ LC   +  EA  
Sbjct: 88  FEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQG 147

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +MVAQG   + VT++ LI    +      A  +L+ + +     +   +  +I  LC
Sbjct: 148 MLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLC 207

Query: 122 -RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +    E A K L  +  KG  P V+ +N++ING CK   +  A KLL  M EKGC P+ 
Sbjct: 208 NKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNV 267

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F  +I G    N    A   L+K
Sbjct: 268 FTFTILITGLCKANRVGEAQQLLEK 292



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 101/185 (54%), Gaps = 8/185 (4%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCT-FNRLKEAVELFDK 65
            +   I+G+CK        R ++  I++G+      + ++I  LC  +N ++ A ++   
Sbjct: 163 TFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGV 222

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           ++A+G T  ++ +N +I+   + +   SA  LL+ +       N+  ++++I GLC+  R
Sbjct: 223 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 282

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA++ L+++   G  P VVTY+ +INGLCK+G + +A +L   M+ + C P+  + N 
Sbjct: 283 VGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNI 342

Query: 186 VIQGF 190
           +I G 
Sbjct: 343 LIDGL 347



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+CK  ++D A        ++    +V  ++ LI+GLC   R++EA +L+
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLVIDGLCR 122
            +M   G   +++TYN LI    +      A  L QT+ E      N   YS +  G   
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 420

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +GR  +A +    L +KG  P + TY  LI   CK    +E  +L+ +M  KG  P   +
Sbjct: 421 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 480

Query: 183 FNTVIQGFLVKNETDRA 199
            + V+ G    N T+RA
Sbjct: 481 LSAVLGGLFEGNHTERA 497



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 11/215 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           F L E+R    N   + I I+G+CK + I+ A +        G   D+  Y+SLI+GLC 
Sbjct: 325 FQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 384

Query: 53  FNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNI 110
             ++ EA +LF  +   G++ A  VTY+ L H  +   GR +    + ++  DK +  ++
Sbjct: 385 SFQVDEAFQLFQTIPESGVSAANAVTYSTLFH-GYAALGRMADACRIFSMLVDKGFSPDL 443

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ +I   C+  R  E  + +++++ KG  P V T + ++ GL +      A +L   
Sbjct: 444 ATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDS 503

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +GC  D+  +N V++G    ++ D+A + L++
Sbjct: 504 MAARGCTDDALIYNLVVEGMARASKHDKALAVLEQ 538



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 38/211 (18%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            KG    V   S+++ GL   N  + A++LFD M A+G T + + YN ++          
Sbjct: 471 SKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHD 530

Query: 93  SAMALLQTL--ERDK------------------------------------YELNIEVYS 114
            A+A+L+ +  +RD+                                    +   +  Y+
Sbjct: 531 KALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYN 590

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL R+ RW+EA +  + +   G  P + T N++I+ LC    + +A +L+ +M + 
Sbjct: 591 RLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKL 650

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  + NT+I G+      D A   L++
Sbjct: 651 GCCPDIETCNTLIGGYCKSGRADLARKLLEE 681



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 9/211 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTF 53
           FD    R   N       ++ +C++     A+         IC+ + F Y  LI G  + 
Sbjct: 11  FDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSA 70

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L  A++L ++M + G     V +  L+    +      A+   + + +D    ++  Y
Sbjct: 71  GDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAP-DVMTY 129

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++  LC+ G+++EA+  L ++  +G  P  VT++ LI+GLCK G   +A ++L  + +
Sbjct: 130 TALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQ 189

Query: 174 KGCFPDSTSFNTVIQGFLVK-NETDRASSFL 203
           +G      +F T+IQ    K N  + AS  L
Sbjct: 190 RGMGNSDAAFETIIQRLCNKYNSVELASKVL 220



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D  +++F  +       +  +C++ + D A        ++G    V  Y+ L++GL    
Sbjct: 541 DKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQ 600

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  EA ++F+ MV+ G   E+ T N +I           A  L+Q + +     +IE  +
Sbjct: 601 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCN 660

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +I G C+ GR + ARK L++++E GL P   T+++L
Sbjct: 661 TLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
           +L+  LC   +  +A +L  KM  +G  A + +YN L+      Q    A  + + +   
Sbjct: 556 ALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSA 615

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                I   ++VI  LC   + ++A + + ++S+ G  P + T N LI G CK G    A
Sbjct: 616 GPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLA 675

Query: 165 DKLLVQMKEKGCFPDSTSFN 184
            KLL +M E G  P+ T+ +
Sbjct: 676 RKLLEEMTEAGLEPNDTTHD 695


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  ++ +   Y   I+ +CK R ++ A+       +KGI  +V  Y++L+NGLC   R
Sbjct: 181 MVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGR 240

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A  L   M+ + IT  ++TY+ L+ D + K G+   A  + + + R   + +I  YS
Sbjct: 241 WNDAARLLRDMIKRKITPNVITYSALL-DAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC   R +EA +  D +  KG  P VV+YN LING CK   + +  KL  +M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   ++ ++NT+IQGF    + D+A  F  +
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQ 390



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 42/225 (18%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + + + I IN  C   ++  A+       K G   D     SL+NG C  NR+ +AV
Sbjct: 116 IRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV 175

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L DKMV  G   ++V YN +I    + +    A+   + + R     N+  Y+ +++GL
Sbjct: 176 SLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGL 235

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGV----------------------------------- 145
           C  GRW +A + L  + ++ + P V                                   
Sbjct: 236 CNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDI 295

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VTY+ LINGLC    I EA+++   M  KGCFPD  S+NT+I GF
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 42/203 (20%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+C    ID A       + KG   DV  Y++LING C   R+++ ++LF KM 
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMS 357

Query: 68  AQGITAELVTYNPLIH------DNWEKQGRFS---------------------------- 93
            +G+    VTYN LI       D  + Q  FS                            
Sbjct: 358 QRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLE 417

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ + + +++ + +L+I  Y+ VI G+C+ G+ E+A      LS KGL P +VTY  ++
Sbjct: 418 KALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMM 477

Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
           +GLC KG+  E + L  +MK++G
Sbjct: 478 SGLCTKGLQHEVEALYTKMKQEG 500



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ +++   N   Y   ++   K       +EI +  ++  I  D+  YSSLINGLC  +
Sbjct: 250 DMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA ++FD MV++G   ++V+YN LI+   + +     M L + + +     N   Y+
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  +VG  ++A++   Q+   G+ P + TYNIL+ GLC  G++ +A  +   M++ 
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKS 429

Query: 175 GCFPDSTSFNTVIQGF 190
               D  ++ TVIQG 
Sbjct: 430 EMDLDIVTYTTVIQGM 445



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ +IN  C   ++  A+ +  KM+  G   + VT   L++    +     A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++L+  +    Y  +I  Y+ +ID LC+  R  +A     ++  KG+ P VVTY  L+NG
Sbjct: 175 VSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNG 234

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           LC  G   +A +LL  M ++   P+  +++ ++  F VKN
Sbjct: 235 LCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAF-VKN 273



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 76/162 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +    +    + L  KM   GI  +L T+N +I+          A+++L  + 
Sbjct: 88  FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKML 147

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +      +++G CR  R  +A   +D++ E G  P +V YN +I+ LCK   + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVN 207

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +A     ++  KG  P+  ++  ++ G       + A+  L+
Sbjct: 208 DALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLR 249



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A+ LF +MV       +V +N L+    + +     ++L + +E      ++  ++
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VI+  C   +   A   L ++ + G  P  VT   L+NG C++  + +A  L+ +M E 
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N +I         + A  F K+
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKE 215


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  +K +   Y   I+ +CK + ++ A        +KGI  +V  Y++L+NGLC  +R
Sbjct: 284 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 343

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A  L   M+ + IT  ++TY+ L+ D + K G+   A  L + + R   + +I  YS
Sbjct: 344 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 402

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC   R +EA +  D +  KG +  VV+YN LING CK   + +  KL  +M ++
Sbjct: 403 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 462

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   ++ ++NT+IQGF    + D+A  F  +
Sbjct: 463 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 493



 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 14   VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I G CK + ++  +       ++G+  +   Y+ LI GL        A E+F +M
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 1071

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            V+ G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+ G+
Sbjct: 1072 VSDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             E+       LS KG+ P VV YN +I+G C+KG   EAD L  +MKE G  P+S  +NT
Sbjct: 1131 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 1190

Query: 186  VIQGFLVKNETDRASSFLKK 205
            +I+  L   + + ++  +K+
Sbjct: 1191 LIRARLRDGDREASAELIKE 1210



 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14   VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   ING C    +D A       + K    DV  Y++LI G C + R++E +E+F +M
Sbjct: 977  TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 1036

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              +G+    VTYN LI   ++      A  + + +  D    NI  Y+ ++DGLC+ G+ 
Sbjct: 1037 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 1096

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            E+A    + L    + P + TYNI+I G+CK G + +   L   +  KG  PD  ++NT+
Sbjct: 1097 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 1156

Query: 187  IQGFLVKNETDRASSFLKK 205
            I GF  K   + A +  K+
Sbjct: 1157 ISGFCRKGSKEEADALFKE 1175



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +Y   I+G+CK + +D A+        KGI  +V  YSSLI+ LC + R  +A  L   M
Sbjct: 872  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 931

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + + I  ++ T++ LI D + K+G+   A  L   + +   + +I  YS +I+G C   R
Sbjct: 932  IERKINPDVFTFSALI-DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 990

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +EA++  + +  K   P VVTYN LI G CK   + E  ++  +M ++G   ++ ++N 
Sbjct: 991  LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 1050

Query: 186  VIQGFLVKNETDRASSFLKK 205
            +IQG     + D A    K+
Sbjct: 1051 LIQGLFQAGDCDMAQEIFKE 1070



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + + I IN  C   ++  A+       K G   D     SL+NG C  NR+ +AV 
Sbjct: 220 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 279

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L DKMV  G   ++V YN +I    + +    A    + +ER     N+  Y+ +++GLC
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 339

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
              RW +A + L  + +K + P V+TY+ L++   K G ++EA +L  +M      PD  
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 399

Query: 182 SFNTVIQGFLVKNETDRAS 200
           +++++I G  + +  D A+
Sbjct: 400 TYSSLINGLCLHDRIDEAN 418



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 42/204 (20%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C    ID A       + KG   DV  Y++LING C   R+++ ++LF +M
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 459

Query: 67  VAQGITAELVTYNPLIH------DNWEKQGRFS--------------------------- 93
             +G+ +  VTYN LI       D  + Q  FS                           
Sbjct: 460 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 519

Query: 94  --AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ + + +++ + +L+I  Y+ VI G+C+ G+ EEA      LS KGL P +VTY  +
Sbjct: 520 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 579

Query: 152 INGLCKKGMIMEADKLLVQMKEKG 175
           ++GLC KG++ E + L  +MK++G
Sbjct: 580 MSGLCTKGLLHEVEALYTKMKQEG 603



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 7/191 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N       +NG C  + I  A+         G   +   +++LI+GL   N+  EA+
Sbjct: 761 YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAM 820

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L D+MVA+G   +LVTY  +++   ++     A  LL  +E+ K E  + +Y+ +IDGL
Sbjct: 821 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 880

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+    ++A     ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M E+   PD 
Sbjct: 881 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 940

Query: 181 TSFNTVIQGFL 191
            +F+ +I  F+
Sbjct: 941 FTFSALIDAFV 951



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G   ++   SSL+NG C   R+ EAV L 
Sbjct: 729 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 788

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G     VT+N LIH  +       AMAL+  +     + ++  Y +V++GLC+ 
Sbjct: 789 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 848

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++ +  L PGV+ YN +I+GLCK   + +A  L  +M+ KG  P+  ++
Sbjct: 849 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 184 NTVIQ 188
           +++I 
Sbjct: 909 SSLIS 913



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 7/182 (3%)

Query: 16  GIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           G  +NG C+       +  +D  ++ G   D+  Y+++I+ LC   R+ +A + F ++  
Sbjct: 262 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 321

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +GI   +VTY  L++          A  LL  + + K   N+  YS ++D   + G+  E
Sbjct: 322 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 381

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A++  +++    + P +VTY+ LINGLC    I EA+++   M  KGC  D  S+NT+I 
Sbjct: 382 AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLIN 441

Query: 189 GF 190
           GF
Sbjct: 442 GF 443



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +++   N   Y   ++   K  ++  A       ++  I  D+  YSSLINGLC  +
Sbjct: 353 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA ++FD MV++G  A++V+YN LI+   + +     M L + + +     N   Y+
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  + G  ++A++   Q+   G+ P + TYNIL+ GLC  G + +A  +   M+++
Sbjct: 473 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 532

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               D  ++ TVI+G     + + A S  
Sbjct: 533 EMDLDIVTYTTVIRGMCKTGKVEEAWSLF 561



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  + + YS LIN  C  ++L  A+ +  KM+  G    +VT + L++     +    A
Sbjct: 725 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 784

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y+ N   ++ +I GL    +  EA   +D++  KG  P +VTY +++NG
Sbjct: 785 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 844

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK+G    A  LL +M++    P    +NT+I G       D A +  K+
Sbjct: 845 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 895



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ +IN  C   ++  A+ +  KM+  G   + VT   L++    +     A
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++L+  +    Y+ +I  Y+ +ID LC+  R  +A     ++  KG+ P VVTY  L+NG
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           LC      +A +LL  M +K   P+  +++ ++  F VKN
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF-VKN 376



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            +++++   GN   Y I I G+ +  + D A       +  G+  ++  Y++L++GLC   
Sbjct: 1035 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 1094

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +L++A+ +F+ +    +   + TYN +I    +         L   L     + ++  Y+
Sbjct: 1095 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 1154

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +I G CR G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  
Sbjct: 1155 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 1214

Query: 175  GCFPDSTSFNTV 186
            G   D+++   V
Sbjct: 1215 GFAGDASTIGLV 1226



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 32  IKKGICLDVF---VYSSLINGLCTFNRLKEAV----------ELFDKMVAQGITAELVTY 78
           IK    +D+F   V S     +  FNRL  A+           L  KM   GI  +L T+
Sbjct: 167 IKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTF 226

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N +I+          A+++L  + +  YE +      +++G CR  R  +A   +D++ E
Sbjct: 227 NIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 286

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            G  P +V YN +I+ LCK   + +A     +++ KG  P+  ++  ++ G    +    
Sbjct: 287 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 346

Query: 199 ASSFL 203
           A+  L
Sbjct: 347 AARLL 351



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A++LF  MV       +V +N L+    + +     ++L + +E      ++  ++
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VI+  C   +   A   L ++ + G  P  VT   L+NG C++  + +A  L+ +M E 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N +I         + A  F K+
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 318



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 111/298 (37%), Gaps = 94/298 (31%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ ++    +   Y   I GMCK  +++ A         KG+  D+  Y+++++GLCT  
Sbjct: 528 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587

Query: 55  RLKEAVELFDKMVAQGI--------------TAELVT------YNPLI------------ 82
            L E   L+ KM  +G+              +AEL+       Y P +            
Sbjct: 588 LLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKA 647

Query: 83  ------------HDNWEKQGRF--------SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
                       +D  EK  R          A+AL   + + +   +I  +S ++  + +
Sbjct: 648 LSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAK 707

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM---------------------- 160
           + +++      +Q+   G+     TY+ILIN  C++                        
Sbjct: 708 MNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVT 767

Query: 161 -------------IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                        I EA  L+ QM   G  P++ +FNT+I G  + N+   A + + +
Sbjct: 768 LSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 825


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G+CK   ++ A++       KG+ +DV VYS+LI+G C+   L     LF
Sbjct: 44  NSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALF 103

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +GI+  +V Y+ LI+   +K     A A+L T+     + ++  Y+ +I GLC+ 
Sbjct: 104 DEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKD 163

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A    D ++EKG  P  VTYN+LINGLCK+G I +A K+   M EKG   +  S+
Sbjct: 164 GRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSY 223

Query: 184 NTVIQGFLVKNETDRA 199
           NT+I G     + D A
Sbjct: 224 NTLIMGLCNNGKLDEA 239



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           D+  Y+++INGLC   RL++AV+L  +M          TY  L+ D   K+GR   AM L
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILM-DGLCKEGRVEEAMRL 67

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  ++R   E+++ VYS +I G C  G  +  +   D++ EKG+ P VV Y+ LING CK
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           KG+  EA  +L  M E+G  PD  ++  +I G 
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGL 160



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 9/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N  VY   ING CK    RE    + +  ++GI  DV+ Y+ +I GLC   
Sbjct: 105 EMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDG 164

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R ++A++LFD M  +G     VTYN LI+   ++     A  + +T+      L +  Y+
Sbjct: 165 RARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYN 224

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +I GLC  G+ +EA K    L E G  + P V+T+N +I GLCK+G + +A ++   M 
Sbjct: 225 TLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMI 284

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E+G F +  + + +I  ++     D+A    K+
Sbjct: 285 ERGSFGNLFTCHILIGEYIKSGIIDKAMELWKR 317



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + + + Y   I G+CK       +   D   +KG       Y+ LINGLC    
Sbjct: 141 MTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGC 200

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVY 113
           + +A ++F+ M+ +G   E+V+YN LI           AM L  +L  D    E ++  +
Sbjct: 201 IGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITF 260

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI GLC+ GR ++A +  D + E+G    + T +ILI    K G+I +A +L  ++ +
Sbjct: 261 NTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHK 320

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P ST+++ +I GF
Sbjct: 321 LGLVPSSTTYSVMIDGF 337



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           GN     I I    K   ID A+       K G+      YS +I+G C  + L  A  L
Sbjct: 290 GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGL 349

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +M   G++  L  YN L+    ++     A  L Q ++    E +   ++++IDG  +
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G    A++ L+ + + GL P   TY+  IN L K G + EA      M   G  PD+  
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHV 469

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++++I+GF + +E +   + L++
Sbjct: 470 YDSLIKGFGLNDEIEEVINLLRQ 492



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 73/133 (54%)

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I  ++V+YN +I+   +++    A+ LL  +E    E N   Y +++DGLC+ GR EEA 
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAM 65

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L ++  KGL   VV Y+ LI+G C KG +     L  +M EKG  P+   ++ +I GF
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 191 LVKNETDRASSFL 203
             K     A++ L
Sbjct: 126 CKKGLWREATAVL 138



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 14  VYGIRINGMCKIREID------SAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G CK+  ++      S +K  G+   +F Y++L+  LC  + L++A  LF +M
Sbjct: 329 TYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEM 388

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                  + +++N +I    +     SA  LL  +++     +   YS  I+ L ++G+ 
Sbjct: 389 KESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQM 448

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA+   D +   G+ P    Y+ LI G      I E   LL QM + G   D    N++
Sbjct: 449 EEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSI 508

Query: 187 I 187
           +
Sbjct: 509 L 509


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 17  IRINGMCKIRE-IDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           I I  +CK +E +DSA++       +G   D + Y +LINGLC    + EA ELF +M  
Sbjct: 160 ILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ 219

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G +A +VTY  LIH   +      A+ LL+ ++R+  E N+  YS ++DGLC+ G   +
Sbjct: 220 KGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQ 279

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + L+ + +K  +P +VTY+ LINGLCK+  + EA ++L +M+ +G  P++  +  +I 
Sbjct: 280 AMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIIS 339

Query: 189 GFLVKNETDRASSFL 203
           G         A++F+
Sbjct: 340 GLCAAGSYQEAANFI 354



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 18/205 (8%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  ING+C++  I  A        +KG    V  Y+SLI+GLC  N L EA+ L ++
Sbjct: 192 YTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEE 251

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M    I   + TY+ L+ D   K G  S AM LL+ +++  +  N+  YS +I+GLC+  
Sbjct: 252 MKRNDIEPNVFTYSSLM-DGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKER 310

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF- 183
           +  EA + LD++  +GL P    Y  +I+GLC  G   EA   + +M   G  P+  S+ 
Sbjct: 311 KLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWS 370

Query: 184 ------NTVIQGFLVKNETDRASSF 202
                 N V+QG    N  D   +F
Sbjct: 371 LHVRMHNMVVQGLC--NNVDPPRAF 393



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 49/251 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  +   Y   I+G+C+   +D AI       +  I  +VF YSSL++GLC   
Sbjct: 216 EMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGG 275

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A++L + M  +     +VTY+ LI+   +++    A+ +L  +     + N  +Y 
Sbjct: 276 HSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYG 335

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPG-------VVTYNILINGL------------ 155
            +I GLC  G ++EA   +D++   G+ P        V  +N+++ GL            
Sbjct: 336 KIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQL 395

Query: 156 -----------------------CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
                                  CK+G + +A ++L +M   GC PD   +N VI G   
Sbjct: 396 YLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWD 455

Query: 193 KNETDRASSFL 203
           + +   A+  L
Sbjct: 456 RKKVREATEQL 466



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+CK R++  A++       +G+  +  +Y  +I+GLC     +EA    
Sbjct: 295 NMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFI 354

Query: 64  DKMVAQGITAELVTYNPLIH-DNWEKQGRFS------AMALLQTLERDKYELNIEVYSLV 116
           D+MV  GI+    +++  +   N   QG  +      A  L  ++      + I+ +  +
Sbjct: 355 DEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCL 414

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMKEK 174
           +   C+ G   +A + L+++   G +P    +N++I GL  +  + EA ++LLV++++K
Sbjct: 415 VKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQK 473



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 4/181 (2%)

Query: 29  DSAIKK---GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           DSA  +   G   D   +  +I+ L T N+ + A  + ++M  +        +  +    
Sbjct: 36  DSATAEYGNGFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGY 95

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ +   +E  +     + Y  ++D L      + A     ++ E G+   V
Sbjct: 96  GRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSV 155

Query: 146 VTYNILINGLCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           V+ NILI  LCK K  +  A ++  +M  +GC PDS ++ T+I G         A    K
Sbjct: 156 VSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFK 215

Query: 205 K 205
           +
Sbjct: 216 E 216


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C + +++SA         KG+  D   Y++LING C   ++KEA+ L+
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGR-------------------------------- 91
           ++M+  G +  + TY  L+   ++K G+                                
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQK-GKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459

Query: 92  ----FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
               F AM L   L+   ++LNIE YS +IDGLC+ G+ E A +  ++LS++GL P VVT
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT 519

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YNI+I+G CK G +  A+ L  +M+E GC PD  ++NT++ GF   N+ +     L K
Sbjct: 520 YNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHK 577



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 23/198 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--KGICLD-----------VFVYSSLINGLCTFNRLK 57
           N   YG  I G+C+   ++ A+K  K +  D           V  YS +I+GLC   R  
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 58  EAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEV 112
           EA ELF++M AQG+  ++++Y+ LIH       W++        + Q ++ D     +  
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPD-----MVT 309

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +S++ID LC+ G+  EA+K L+ + ++G+VP ++TYN LI+G C  G +  A +L + M 
Sbjct: 310 FSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMP 369

Query: 173 EKGCFPDSTSFNTVIQGF 190
            KG  PD  S+ T+I G+
Sbjct: 370 SKGLEPDEISYTTLINGY 387



 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+CK+   D A +       +G+  DV  YS+LI+G C   +  ++  LFD+M
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V QG+  ++VT++ LI D   K+G+ + A  LL+ + +     N+  Y+ +IDG C VG 
Sbjct: 299 VDQGVQPDMVTFSVLI-DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              AR+    +  KGL P  ++Y  LING CK   + EA  L  +M + G  P+ T++ T
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 186 VIQGFLVKNETDRA 199
           +++G   K +   A
Sbjct: 418 LLKGLFQKGKVGDA 431



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 16/216 (7%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           E R  G   +     I  N +C +  +  A+       ++G   +V  Y++LI GLC  +
Sbjct: 116 EMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEH 175

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYELNIE- 111
           R+ EA  LF +M   G T   VTY  LI    +      A+ L + +  D  +Y +N + 
Sbjct: 176 RISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKP 235

Query: 112 ---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               YS++IDGLC+VGR +EA++  +++  +G++P V++Y+ LI+G C  G   ++  L 
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLF 295

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +M ++G  PD  +F+ +I     + +   A   L+
Sbjct: 296 DEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLE 331



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 10/193 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  + G+ +  ++  A K        G+  +  +Y   ++GLC  + L EA+ELF
Sbjct: 411 NVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELF 470

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +++ +      +  Y+ LI D   K G+  +A  L + L ++  + ++  Y+++I G C+
Sbjct: 471 NELKSYNFKLNIENYSCLI-DGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCK 529

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG+ + A    +++ E G  P ++ YN L+ G C+   + E  KLL +M +K   P++ S
Sbjct: 530 VGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS 589

Query: 183 FNTVIQGFLVKNE 195
             T++   L K+E
Sbjct: 590 C-TIVVDMLCKDE 601



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLV 116
           +A   FD M+       + ++N L+     K   +S + +L   +       ++   S++
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLL-GGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSIL 132

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
            + LC V R  EA   +  +  +G +P VVTY  LI GLC +  I EA +L ++M++ GC
Sbjct: 133 ANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGC 192

Query: 177 FPDSTSFNTVIQGF 190
            P++ ++ T+I+G 
Sbjct: 193 TPNAVTYGTLIKGL 206



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L    FK N   Y   I+G+CK  ++++A        ++G+  DV  Y+ +I+G C   
Sbjct: 472 ELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVG 531

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A  LF+KM   G T +++ YN L+    E       + LL  + +     N    +
Sbjct: 532 QVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCT 591

Query: 115 LVIDGLCRVGRWEE 128
           +V+D LC+  ++++
Sbjct: 592 IVVDMLCKDEKYKK 605



 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 46/91 (50%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  ++ ++ GL ++  + +     +++   GL P + T +IL N LC    + EA   + 
Sbjct: 91  ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMA 150

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +  +G  P+  ++ T+I+G  +++    A+
Sbjct: 151 GILRRGYIPNVVTYTTLIKGLCMEHRISEAT 181


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 111/196 (56%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+ +D A++       K I  +V  YSSLI+GLC   ++  A++L D+M 
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G    +VTY+ ++    +     +A+ALL  ++    + N+  Y+++I GLC+ G+ E
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +ARK  + L  KG    V TY ++I G C KG+  EA  LL +M++ GC P++ ++  +I
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429

Query: 188 QGFLVKNETDRASSFL 203
                K+E + A   L
Sbjct: 430 LSLFKKDENEMAEKLL 445



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 101/174 (58%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I + I  DV+ ++ L++G C   R+KEA  +   M+ QGI   +VTYN L+   +  +  
Sbjct: 169 ILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQV 228

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A ++  T+ +     +I+ YS++I+G C++   +EA + L ++  K ++P VVTY+ L
Sbjct: 229 NKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSL 288

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GLCK G I  A KL+ +M ++G  P+  ++++++      ++ D A + L +
Sbjct: 289 IDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQ 342



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 105/192 (54%), Gaps = 7/192 (3%)

Query: 6   QRFKGNFHVYGIRINGMCK---IREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKE 58
           +    + + + I ++G CK   ++E  + +     +GI   V  Y+SL++G     ++ +
Sbjct: 171 ENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNK 230

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M   G++ ++ +Y+ LI+   + +    AM LL+ +   +   N+  YS +ID
Sbjct: 231 AKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLID 290

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC+ G+   A K +D++ ++G  P +VTY+ +++ LCK   +  A  LL QMK +G  P
Sbjct: 291 GLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQP 350

Query: 179 DSTSFNTVIQGF 190
           +  ++  +I+G 
Sbjct: 351 NMYTYTILIKGL 362



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI---------HDNWEKQGRF-SAM 95
           LIN  C    +  A  +  K++  G     +T N LI         HD     G+   A+
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L   +  +    ++  +++++DG C+ GR +EA+  L  +  +G+ PGVVTYN L++G 
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                + +A  +   M + G  PD  S++ +I GF      D A   LK+
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKE 272



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           N + +AV LF++++ Q  T   + +N ++    + +   + + L Q +E    + N+   
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC 100

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+  C++G    A   L ++ + G  P  +T N LI GLC  G I +   ++ ++K+
Sbjct: 101 NILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKD 160

Query: 174 ----------KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
                     +   PD  +F  ++ GF  +     A + L   M
Sbjct: 161 AVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMM 204


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  +K +   Y   I+ +CK + ++ A        +KGI  +V  Y++L+NGLC  +R
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A  L   M+ + IT  ++TY+ L+ D + K G+   A  L + + R   + +I  YS
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC   R +EA +  D +  KG +  VV+YN LING CK   + +  KL  +M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   ++ ++NT+IQGF    + D+A  F  +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + + I IN  C   ++  A+       K G   D     SL+NG C  NR+ +AV 
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L DKMV  G   ++V YN +I    + +    A    + +ER     N+  Y+ +++GLC
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
              RW +A + L  + +K + P V+TY+ L++   K G ++EA +L  +M      PD  
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 182 SFNTVIQGFLVKNETDRAS 200
           +++++I G  + +  D A+
Sbjct: 297 TYSSLINGLCLHDRIDEAN 315



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 42/203 (20%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+C    ID A       + KG   DV  Y++LING C   R+++ ++LF +M 
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 68  AQGITAELVTYNPLIH------DNWEKQGRFS---------------------------- 93
            +G+ +  VTYN LI       D  + Q  FS                            
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELE 417

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ + + +++ + +L+I  Y+ VI G+C+ G+ EEA      LS KGL P +VTY  ++
Sbjct: 418 KALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMM 477

Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
           +GLC KG++ E + L  +MK++G
Sbjct: 478 SGLCTKGLLHEVEALYTKMKQEG 500



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +++   N   Y   ++   K  ++  A       ++  I  D+  YSSLINGLC  +
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA ++FD MV++G  A++V+YN LI+   + +     M L + + +     N   Y+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  + G  ++A++   Q+   G+ P + TYNIL+ GLC  G + +A  +   M+++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               D  ++ TVI+G     + + A S  
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLF 458



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ +IN  C   ++  A+ +  KM+  G   + VT   L++    +     A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++L+  +    Y+ +I  Y+ +ID LC+  R  +A     ++  KG+ P VVTY  L+NG
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           LC      +A +LL  M +K   P+  +++ ++  F VKN
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF-VKN 273



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +    +    + L  KM   GI  +L T+N +I+          A+++L  + 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +      +++G CR  R  +A   +D++ E G  P +V YN +I+ LCK   + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +A     +++ KG  P+  ++  ++ G    +    A+  L
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A++LF  MV       +V +N L+    + +     ++L + +E      ++  ++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VI+  C   +   A   L ++ + G  P  VT   L+NG C++  + +A  L+ +M E 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N +I         + A  F K+
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING CK + +D A+       +K +   +  YSSLI+GLC   R+    +L 
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLI 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +G  A ++TY+ LI D   K G    A+AL   ++      N   +++++DGLC+
Sbjct: 398 DEMHDRGQPANVITYSSLI-DGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++    L  KG    V TYN++I+G CK+G++ EA  +L +M++ GC PD+ +
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVT 516

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F  +I     K+E      F KK
Sbjct: 517 FEIIIIALFKKDENGGNVGFDKK 539



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 42/230 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNR 55
           L  Q F+ N   YG  ING+CKI +  +AIK    +D       V +YS++I+ LC +  
Sbjct: 155 LLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +M  +GI+A++VTY+ LI+    +     A+ LL  +       N+  Y++
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 116 VIDGLCRVGRWEEARKKL-----------------------------------DQLSEKG 140
           ++D LC+ G+ +EA+  L                                   + +S  G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + P V TY ILING CK  M+ EA  L  +M +K   P   +++++I G 
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++ +CK   ++E  S +    K  +  DV  YS+L++G      +K+A  +F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M   G+T ++ TY  LI+   + +    A+ L + + +      I  YS +IDGLC+ 
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR       +D++ ++G    V+TY+ LI+GLCK G +  A  L  +MK++G  P++ +F
Sbjct: 388 GRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTF 447

Query: 184 NTVIQGF 190
             ++ G 
Sbjct: 448 TILLDGL 454



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 56/246 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   I+ +CK + +  A         KGI  DV  YS+LI G C   +LKEA+ 
Sbjct: 196 KPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIG 255

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR------------------------------ 91
           L ++MV + I   + TYN L+ D   K+G+                              
Sbjct: 256 LLNEMVLKTINPNVYTYNILV-DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 92  ------------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                       F+AM+L+          ++  Y+++I+G C+    +EA     ++ +K
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTP------DVHTYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +VPG+VTY+ LI+GLCK G I     L+ +M ++G   +  +++++I G       DRA
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRA 428

Query: 200 SSFLKK 205
            +   K
Sbjct: 429 IALFNK 434



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 44/212 (20%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            L  Q F+ N   YG  ING+CKI +  +AIK       +    DV +Y+++I+ LC    
Sbjct: 1022 LLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQL 1081

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + +A  LF +M  +GI+A++VTYN LI+                                
Sbjct: 1082 VSKAYGLFFEMNVKGISADVVTYNTLIY-------------------------------- 1109

Query: 116  VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG--MIMEADKLLVQMKE 173
               G C VG+ +EA   L+++  K + P V TYNIL++ LCK+G  ++ E+  +L +M++
Sbjct: 1110 ---GFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMED 1166

Query: 174  KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC  ++ +F  +I     K+E D+    L +
Sbjct: 1167 NGCKANAVTFEIIISALFEKDENDKVEKLLHE 1198



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G   D    ++LI GLC   ++K+A+   DK++AQ
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V+Y  LI+   +     +A+ LLQ ++    + N+ +YS +ID LC+     EA
Sbjct: 159 GFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEA 218

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTY+ LI G C +G + EA  LL +M  K   P+  ++N ++  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 190 FLVKNETDRASSFL 203
              + +   A S L
Sbjct: 279 LCKEGKVKEAKSVL 292



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 17   IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            I IN  C + +I          +K+G   D   +++LINGLC   ++ +A+   DK++AQ
Sbjct: 966  ILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQ 1025

Query: 70   GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            G     V+Y  LI+   +     +A+ LL+ ++    + ++ +Y+ +ID LC+     +A
Sbjct: 1026 GFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKA 1085

Query: 130  RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                 +++ KG+   VVTYN LI G C  G + EA  LL +M  K   P+  ++N ++  
Sbjct: 1086 YGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDA 1145

Query: 190  FLV--KNETDRASSFLKK 205
                 K+  D + S L K
Sbjct: 1146 LCKEGKDLLDESLSMLSK 1163



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query: 34   KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            KGI  D+F  + LIN  C   ++     +  K++ +G   + +T+  LI+    K     
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 94   AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            A+     L    ++LN   Y  +I+G+C++G    A K L ++  +   P VV YN +I+
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 154  GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LCK  ++ +A  L  +M  KG   D  ++NT+I GF +  +   A   L K
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNK 1126



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  D+   + LIN  C   ++     +  K++ +G   + VT N LI     K     
Sbjct: 88  KGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKK 147

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     L    ++LN   Y  +I+G+C++G    A K L ++  +   P VV Y+ +I+
Sbjct: 148 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIID 207

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LCK  ++ EA  L  +M  KG   D  +++T+I GF ++ +   A   L +
Sbjct: 208 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNE 259



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           +   + +AV  F++M+    T  ++ +N ++ D++ K   +S A++L   LE    + ++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKIL-DSFAKMKHYSTAVSLSHRLELKGIQPDL 94

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++I+  C +G+       L ++ ++G  P  VT N LI GLC KG + +A    DK
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   +  S+ T+I G     +T  A   L+K
Sbjct: 155 LLAQ----GFQLNQVSYGTLINGVCKIGDTRAAIKLLQK 189



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 66   MVAQGITAE----LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            M  +G+T+      + +NP+ H  +      S    L+ ++ D + LNI     +I+  C
Sbjct: 920  MAERGVTSVGAYIRIPHNPMKH--YSTAVSLSHRLELKGIQPDLFTLNI-----LINCFC 972

Query: 122  RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DKLLVQMKEKGCF 177
             +G+       L ++ ++G  P  +T+  LINGLC KG + +A    DKLL Q    G  
Sbjct: 973  HMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQ----GFQ 1028

Query: 178  PDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  S+ T+I G     +T  A   L+K
Sbjct: 1029 LNQVSYGTLINGVCKIGDTRAAIKLLRK 1056


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I ING CK + ID A       I +G   +   Y++LI+GLC   RL+EA +
Sbjct: 252 KPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQD 311

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M   G    L TY  L+ D + KQG    A  L + ++    + N+ +Y+++++ +
Sbjct: 312 LFKNMHTNGNLPNLYTYAILL-DGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  ++AR+   +L   GL P V  Y  +INGLCK+G++ EA +    M++ GC PD 
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDE 430

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+N +I+GFL   +  RA
Sbjct: 431 FSYNVIIRGFLQHKDESRA 449



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK R ++ A+        K I   +F Y+SLI GLC F+R KEA  L 
Sbjct: 114 NVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALL 173

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M +  I   +VT+N L+ D + K+G+  +A  +L+T+     E ++  Y+ ++ G   
Sbjct: 174 NEMTSLNIMPNVVTFNVLV-DTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSM 232

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
                EARK  D +  KG  P V +Y+ILING CK   I EA +L  +M  +G  P++ S
Sbjct: 233 WTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVS 292

Query: 183 FNTVIQGF 190
           +NT+I G 
Sbjct: 293 YNTLIHGL 300



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+ K+ +        D  + +G   D + Y+++INGLC       A  LF KM   G 
Sbjct: 52  INGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGC 111

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTY+ LIH   + +    A+ +   ++       I  Y+ +I GLC   RW+EA  
Sbjct: 112 QLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASA 171

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L++++   ++P VVT+N+L++  CK+G ++ A+ +L  M E G  PD  ++N+++ G+ 
Sbjct: 172 LLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYS 231

Query: 192 VKNETDRA 199
           +  E   A
Sbjct: 232 MWTEVVEA 239



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +  + + + Y   ING+CKI E   A        + G  L+V  YS+LI+ LC + 
Sbjct: 70  DMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYR 129

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA+++F  M A+ I+  + TY  LI           A ALL  +       N+  ++
Sbjct: 130 RVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFN 189

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++D  C+ G+   A   L  ++E G+ P VVTYN L+ G      ++EA KL   M  K
Sbjct: 190 VLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITK 249

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  S++ +I G+      D A     +
Sbjct: 250 GCKPDVFSYSILINGYCKAKRIDEAKQLFNE 280



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N    +++I+  C++ R +     L +  + GL P +VT+  LINGL K G   +A +L 
Sbjct: 9   NTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELF 68

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M  +GC PD  ++ T+I G     ET  A+   KK
Sbjct: 69  DDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKK 105



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G++    T N LI+   + Q      ++L    +   +  I  ++ +I+GL +VG+
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           + +A +  D +  +G  P   TY  +INGLCK G    A  L  +M+E GC  +  +++T
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 186 VIQGF 190
           +I   
Sbjct: 121 LIHSL 125



 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 8   FKGNFHVYGIRINGMCK------IREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +Y I +N MCK       RE+ S +   G+  +V +Y+++INGLC    L EA+
Sbjct: 356 LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEAL 415

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           E F  M   G   +  +YN +I    + +    A+ L+  + RD+
Sbjct: 416 EAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEM-RDR 459


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 113/197 (57%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING CK + ++ A +       K +  D   YS+L+ GLC   R +EA+ LF
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLF 434

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M + G+  +L+ Y+ L+ D + K G    A+ LL+ +   + + NI +Y+++I G+  
Sbjct: 435 KEMCSSGLLPDLMAYSILL-DGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E A++   +LS  G+ P + TYN++I GL K+G+  EA +   +M++ G  PDS S
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCS 553

Query: 183 FNTVIQGFLVKNETDRA 199
           +N +IQGFL   ++  A
Sbjct: 554 YNVIIQGFLQNQDSSTA 570



 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + + R K N   Y   I+ +CK R ++ A++       +GI  DV  Y+++++G C+  +
Sbjct: 227 MEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQ 286

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L EA  LF +MV + +  + VT+N L+ D   K+G  S A  + +T+     E N   Y+
Sbjct: 287 LNEATRLFKEMVGRNVMPDTVTFNILV-DGLCKEGMVSEARCVSETMTEKGAEPNAYTYN 345

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C   + +EA K L  +  KG  P + +YNILING CK   + EA +LL +M EK
Sbjct: 346 ALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEK 405

Query: 175 GCFPDSTSFNTVIQGF 190
              PD+ +++T++QG 
Sbjct: 406 NLTPDTVTYSTLMQGL 421



 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 107/187 (57%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   + IN +C++  +D A+       K GI  D   +++LINGLC   ++KEAV LF
Sbjct: 130 NVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLF 189

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++MV  G    +++YN +I+   +      A+ + + +E+++ + N+  Y+ +ID LC+ 
Sbjct: 190 NEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKD 249

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               EA + L ++ ++G+ P VVTYN +++G C  G + EA +L  +M  +   PD+ +F
Sbjct: 250 RLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTF 309

Query: 184 NTVIQGF 190
           N ++ G 
Sbjct: 310 NILVDGL 316



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE+  + N + Y   ++G C   ++D AIK       KG   ++  Y+ LING C   R
Sbjct: 332 MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR 391

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  L  +M  + +T + VTY+ L+    +      A+ L + +       ++  YS+
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSI 451

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+ G  +EA K L ++ E+ + P ++ Y ILI G+   G +  A +L  ++   G
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADG 511

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N +I+G L +  +D A  F +K
Sbjct: 512 IRPDIWTYNVMIKGLLKEGLSDEAYEFFRK 541



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ++G+CK   +  A        +KG   + + Y++L++G C  N++ EA+++   M
Sbjct: 308 TFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G    L +YN LI+   + +    A  LL  +       +   YS ++ GLC+VGR 
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA     ++   GL+P ++ Y+IL++G CK G + EA KLL +M E+   P+   +  +
Sbjct: 428 REALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTIL 487

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G  +  + + A     K
Sbjct: 488 IRGMFIAGKLEVAKELFSK 506



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+  F +MV       +V +   +    +K+   SA++L   +  D + +   VYSL
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQM--DLFGVTHNVYSL 134

Query: 116 --VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I+ LCR+   + A   + ++ + G+ P  +T+N LINGLC +G I EA  L  +M  
Sbjct: 135 NVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVW 194

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  S+NTVI G      T  A    +K
Sbjct: 195 SGHEPNVISYNTVINGLCKNGNTIMAVRVFRK 226



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 42/181 (23%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G CK   +D A+K       + I  ++ +Y+ LI G+    +L+ A ELF K+
Sbjct: 448 AYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKL 507

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A GI  ++ TYN                                   ++I GL + G  
Sbjct: 508 SADGIRPDIWTYN-----------------------------------VMIKGLLKEGLS 532

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +   ++ + G +P   +YN++I G  +      A +L+ +M  K    DS++F  +
Sbjct: 533 DEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML 592

Query: 187 I 187
           +
Sbjct: 593 L 593


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y   I+G+CK + +D A       +  G   DV  YS L +GLC   R
Sbjct: 71  MAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA EL  +M   G T  LVTYN LI    +      A  LL+TL    +  ++  Y++
Sbjct: 131 IDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTI 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+ GR ++A K ++ + ++G  P V+TY  L+ GLC+ G + EA  +  +M  K 
Sbjct: 191 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 250

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C  D+ ++ +++ G+   + T  A
Sbjct: 251 CTADALAYVSLVNGYCKSSRTKEA 274



 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L    F  +   Y I ++G+CK   +D A+K       +G    V  Y++L+ GLC   R
Sbjct: 176 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR 235

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  +F +MV++  TA+ + Y  L++   +      A  ++  +    Y   I+VY+ 
Sbjct: 236 VDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY---IDVYNA 292

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+ GR +E     + ++ +G VP + TYNI+++GLCK G + EA   L  M   G
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 352

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD  S+N +I G    ++   A   L +
Sbjct: 353 CVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382



 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E++   +   Y I I+G+CK  + D A       + +G+  D   ++S+++GLC   +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A  L   M  +       TYN LI    ++Q    A  L+       +  ++  YS+
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           + DGLC+ GR +EA + + ++S  G  P +VTYN LI+GLCK     +A +LL  +   G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  ++  ++ G   +   D+A
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKA 204



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 48/239 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G+CK  ++D A          G   DV  Y+ +I+GL   ++ KEA ++ 
Sbjct: 321 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 380

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER------------------- 103
           D+M+  GI  + VTYN L+   + K+ RF  A+ +L+ + +                   
Sbjct: 381 DQMIQAGIPPDAVTYNTLMA-QFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439

Query: 104 -----DKYELNIEV------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                D YEL  E+            Y+ +ID LC+ G  ++A   +D ++  G+    V
Sbjct: 440 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 499

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYNI I+ LCK+G + EA  LL +M       D  S+ TVI G     + DRAS   ++
Sbjct: 500 TYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRASKLARE 555



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 19  INGMCKIREIDSAIK--KGICLDVF--VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +NG CK      A K   GI    +  VY++L++G C   RL E   +F+ M  +G    
Sbjct: 262 VNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 321

Query: 75  LVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           + TYN ++ D   K G+   A   L+++       ++  Y+++IDGL +  + +EAR+ L
Sbjct: 322 IKTYN-IVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 380

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           DQ+ + G+ P  VTYN L+   CK+    +A  +L  M + G  PD+ ++NT+I G    
Sbjct: 381 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 440

Query: 194 N 194
           N
Sbjct: 441 N 441



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 41/237 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I  +G+CK   ID A +        G   ++  Y++LI+GLC  ++ ++A 
Sbjct: 111 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAY 170

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL + +V+ G   ++VTY  +I D   K+GR   A+ +++ + +     ++  Y+ +++G
Sbjct: 171 ELLETLVSSGFVPDVVTYT-IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 229

Query: 120 LCRVGRWEEARK----------KLDQLSEKGLV----------------------PGVVT 147
           LCR GR +EA              D L+   LV                      P +  
Sbjct: 230 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV 289

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           YN L++G CK+G + E   +   M  +GC P+  ++N V+ G     + D A  FL+
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLE 346



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 70/207 (33%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++ +  DVF Y+ LI+GLC  ++  +A E+  +MV +G+T + VT+N             
Sbjct: 3   ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNS------------ 50

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                                  ++DGLC+ G++E A   L  ++E+   P   TYN LI
Sbjct: 51  -----------------------IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLI 87

Query: 153 -----------------------------------NGLCKKGMIMEADKLLVQMKEKGCF 177
                                              +GLCK+G I EA +L+ +M   GC 
Sbjct: 88  SGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCT 147

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           P+  ++NT+I G    ++T++A   L+
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLE 174



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKE 58
           +T    + N   Y I I+ +CK   +D A     +     D   Y+++I GLC   +L  
Sbjct: 489 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDR 548

Query: 59  AVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
           A +L  +MVA +G+     T+N LI D + K  R   A+ LL+ + +     ++  Y++V
Sbjct: 549 ASKLAREMVAVKGLCITSHTFNLLI-DAFTKTKRLDEALTLLELMVQRGCSPSVITYNMV 607

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I  LC++ + ++A +  D+++ +G+V   V+Y +LI GLC +G   EA ++L +M    C
Sbjct: 608 ITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 667

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             D      +      +   + A+  L++
Sbjct: 668 EIDDLKCRKLYLALRGQGRGEEAAELLRR 696



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++E+ + P V TYNILI+GLCK     +A ++L +M ++G  PD+ +FN+++ G     +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 196 TDRASSFL 203
            +RA S L
Sbjct: 61  FERAHSLL 68


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 114/200 (57%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C+ + ++ A       +  G+  DV  +S+LI G C   +   A ELF
Sbjct: 305 NIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELF 364

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G   +L T   ++   ++      AM+L + LE+   +L+I +YS++++G+C  
Sbjct: 365 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSS 424

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A +    LS KG+   VVTYNI+INGLCK+G++ +A+ LL++M+E GC PD  ++
Sbjct: 425 GKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY 484

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N  +QG L + E  +++ +L
Sbjct: 485 NVFVQGLLRRYEISKSTKYL 504



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + I IN +C++         +    K G+   +  +++++NGLC    + +A+ 
Sbjct: 58  KPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 117

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             D +   G  ++  T   +I+   +     +A++ L+ +E     L++  YS V+DGLC
Sbjct: 118 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLC 177

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G   EA     Q++ KG+ P + TYN LI+GLC      EA  LL  M  KG  PD  
Sbjct: 178 KDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQ 237

Query: 182 SFNTVIQGFLVKNETDRASS 201
           +FN +   FL      RA S
Sbjct: 238 TFNVIAGRFLKTGMISRAKS 257



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 17/213 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L +  ++ + +  G  ING+CK+    +A+       ++   LDV  YS++++GLC    
Sbjct: 122 LKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGM 181

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNI 110
           + EA++LF +M  +GI   L TYN LIH     D W++     A  LL  + R     ++
Sbjct: 182 VFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKE-----AAPLLANMMRKGIMPDV 236

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           + ++++     + G    A+     +   G+   VVTYN +I   C    + +A ++   
Sbjct: 237 QTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDL 296

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M  KGC P+  ++N++I G+      ++A  FL
Sbjct: 297 MIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFL 329



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    +   Y   ++G+CK   +  A+        KGI  ++F Y+ LI+GLC F+R
Sbjct: 157 MEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDR 216

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  L   M+ +GI  ++ T+N +I   + K G  S A ++   +     E N+  Y+
Sbjct: 217 WKEAAPLLANMMRKGIMPDVQTFN-VIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYN 275

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN------------------------- 149
            +I   C + + ++A +  D +  KG +P +VTYN                         
Sbjct: 276 SIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNN 335

Query: 150 ----------ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                      LI G CK G  + A +L   M + G  PD  +   ++ G    +    A
Sbjct: 336 GLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEA 395

Query: 200 SSFLKK 205
            S  ++
Sbjct: 396 MSLFRE 401



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 43/198 (21%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           FK +FH        M   RE++   K    LD+ +YS ++NG+C+  +L +A+ELF  + 
Sbjct: 387 FKCHFHS-----EAMSLFRELE---KMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLS 438

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  ++VT                                   Y+++I+GLC+ G  +
Sbjct: 439 SKGVKIDVVT-----------------------------------YNIMINGLCKEGLLD 463

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   L ++ E G  P   TYN+ + GL ++  I ++ K L+ MK KG   ++T+   +I
Sbjct: 464 DAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLI 523

Query: 188 QGFLVKNETDRASSFLKK 205
             F    E      FL+K
Sbjct: 524 NYFSANKENRAFQVFLQK 541



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +V  ++ +IN LC  N       +   M   G+   +VT+  +++    +     A
Sbjct: 56  GVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQA 115

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +  +  L+   YE +      +I+GLC+VG    A   L ++ E+     V  Y+ +++G
Sbjct: 116 IRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDG 175

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LCK GM+ EA  L  QM  KG  P+  ++N +I G    +    A+  L   M
Sbjct: 176 LCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMM 228



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 73/147 (49%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A++ + KMV       +  +N L     + +   +A++L++ +     + N+  +++VI+
Sbjct: 10  ALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVIN 69

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LCR+         L  + + G+ P +VT+  ++NGLC +G + +A + +  +K+ G   
Sbjct: 70  CLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYES 129

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  +   +I G      +  A S+LKK
Sbjct: 130 DRYTRGAIINGLCKVGHSSAALSYLKK 156


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 16/178 (8%)

Query: 19  INGMCK---IREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           ++ +CK   I+ +D A+       ++G+  D   Y++LI+GLC   RL++A+ LF +MV 
Sbjct: 192 VDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVV 251

Query: 69  QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            G   +LVTY  ++ D   K  R + AM LL+ +E    + +I +YS+V+DG+CR G  E
Sbjct: 252 YGQIPDLVTYR-ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELE 310

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            AR    +LS KGL P V TY I+INGLC++G++ EA KL  +M E     D  S++T
Sbjct: 311 AARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN----DIESYST 364



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 13/217 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD +T + F+ +   YG  ING+CK R++  A+        KGI  + F YSSLI+GLC 
Sbjct: 103 FDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCI 162

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS----AMALLQTLERDKYEL 108
               KEA+ LF  M+ + I  + +T+N L+ D   K+G       AM L + + +     
Sbjct: 163 LGHWKEAIRLFYAMIHRKIMPDQLTFNTLV-DALCKEGMIQIMDKAMGLFEEMSQQGLIP 221

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y+ +I GLC VGR  +A     ++   G +P +VTY IL + LCK   + EA  LL
Sbjct: 222 DTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLL 281

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             ++     PD   ++ V+ G     E + A     K
Sbjct: 282 KVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSK 318



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G       +++LI GLC   ++ EA++LF
Sbjct: 44  NTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLF 103

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM  +G   +++TY  LI+   + +    A++L   +       N   YS +I GLC +
Sbjct: 104 DKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCIL 163

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK---LLVQMKEKGCFPDS 180
           G W+EA +    +  + ++P  +T+N L++ LCK+GMI   DK   L  +M ++G  PD+
Sbjct: 164 GHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDT 223

Query: 181 TSFNTVIQGF 190
            ++NT+I G 
Sbjct: 224 VTYNTLIHGL 233



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L+  +         + L+ +M + GI     T N LI+          A ++L  + 
Sbjct: 13  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL 72

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y+ +   ++ +I GLC  G+  EA +  D+++ +G  P V+TY  LINGLCK   + 
Sbjct: 73  KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLT 132

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           EA  L   M  KG  P++ +++++I G  +
Sbjct: 133 EALSLFSDMLAKGISPNNFTYSSLIHGLCI 162



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +  + Y LNI     +I+  C + R   A   L  + + G  P   T+  LI GLC +G 
Sbjct: 41  IPHNTYTLNI-----LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGK 95

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I EA +L  +M  +G  PD  ++ T+I G     +   A S   
Sbjct: 96  IGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFS 139



 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 40/93 (43%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +S ++  + R+  +        Q+   G+     T NILIN  C    +  A  +L  + 
Sbjct: 13  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL 72

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  P + +F T+I+G  V+ +   A     K
Sbjct: 73  KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDK 105


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  DV  Y +LI GLC    +  AVEL ++M   GI   +V Y+ L+H  + K GR+ +
Sbjct: 124 GVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLH-GYCKTGRWES 182

Query: 95  MA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           +  + + +     E ++ +Y+ +ID LCR G+ ++A + +D ++E+GL P VVTYN+LIN
Sbjct: 183 VGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLIN 242

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +CK+G + EA  L   M EKG  PD  ++NT+I G     E D A + L++ M
Sbjct: 243 SMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMM 296



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   + N   + + I G+ ++ ++  A++        G+  D F YS LING C   +
Sbjct: 332 MAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQ 391

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++ A     +M  QG+  E V Y PL+    ++     A  L   ++R+  +L+   YS 
Sbjct: 392 VERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-CKLDAAAYST 450

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G  + G  + A + L  + ++GL+P  VTY+I IN   K G +  A+++L QM   G
Sbjct: 451 MIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASG 510

Query: 176 CFPDSTSFNTVIQGFLVKNETDR 198
             PD   F+++IQG+  K +T++
Sbjct: 511 FVPDVAVFDSLIQGYGAKGDTEK 533



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E   + N  VY   ++G CK    +S  K       +GI  DV +Y++LI+ LC   
Sbjct: 154 EMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHG 213

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++K+A  + D M  +G+   +VTYN LI+   ++     A+ L + +     + ++  Y+
Sbjct: 214 KVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYN 273

Query: 115 LVIDGLCRVGRWEEARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +I GL  V   +EA   L+++   E  + P ++T+N +I+GLCK G + +A ++   M 
Sbjct: 274 TLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMA 333

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E GC  +  +FN +I G L  ++  +A   +
Sbjct: 334 ENGCRCNLVAFNLLIGGLLRVHKVKKAMELM 364



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 9/201 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+ +C+        R +D   ++G+  +V  Y+ LIN +C    ++EA++L   M
Sbjct: 201 MYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNM 260

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVG 124
             +G+  ++VTYN LI           AMALL+ + + +  +  ++  ++ VI GLC++G
Sbjct: 261 SEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG 320

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              +A +    ++E G    +V +N+LI GL +   + +A +L+ +M   G  PDS +++
Sbjct: 321 WMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYS 380

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I GF    + +RA S+L +
Sbjct: 381 ILINGFCKMRQVERAESYLSE 401



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 80/282 (28%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + N   Y + IN MCK   +  A+       +KG+  DV  Y++LI GL +   
Sbjct: 225 MTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLE 284

Query: 56  LKEAVELFDKMVAQG---ITAELVTYNPLIHD----NWEKQG-----------------R 91
           + EA+ L ++M+ QG   +  +L+T+N +IH      W +Q                   
Sbjct: 285 MDEAMALLEEMM-QGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVA 343

Query: 92  FS--------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           F+              AM L+  +     + +   YS++I+G C++ + E A   L ++ 
Sbjct: 344 FNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEA--------------------------------- 164
            +G+ P  V Y  L+  +C +GM+ +A                                 
Sbjct: 404 HQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKI 463

Query: 165 -DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++ L  M ++G  PD+ +++  I  F    +   A   LK+
Sbjct: 464 AEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQ 505



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE---LVTYNPLIHDNWEKQGRFSAM 95
           D   Y++++  LC    L  A+ L   M  +   A     ++Y  L+      +    A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            LL++++      ++  Y  +I GLC     + A + L+++ E G+ P VV Y+ L++G 
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           CK G      K+  +M  +G  PD   +  +I       +  +A+  +
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVM 222



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 8/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++     + +   Y I ING CK+R+++ A         +G+  +   Y  L+  +C   
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A +LF++M  +    +   Y+ +IH  ++   +  A   L+ +  +    +   YS
Sbjct: 426 MMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYS 484

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + I+   + G    A + L Q++  G VP V  ++ LI G   KG   +  +L  +M  K
Sbjct: 485 IPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAK 544

Query: 175 GCFPDSTSFNTVIQGF 190
               D    +T++   
Sbjct: 545 DVALDPKIISTIVTSL 560



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLV---PGVVTYNILINGLCKKGMIMEADKLLV 169
           Y+ V+  LCR G  + A   L  +S +  +   P  ++Y  L+  LC      +A  LL 
Sbjct: 59  YNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLR 118

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            M++ G  PD  ++ T+I+G     + D A   L +
Sbjct: 119 SMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNE 154


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  +K +   Y   I+ +CK + ++ A        +KGI  +V  Y++L+NGLC  +R
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A  L   M+ + IT  ++TY+ L+ D + K G+   A  L + + R   + +I  YS
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLC   R +EA +  D +  KG +  VV+YN LING CK   + +  KL  +M ++
Sbjct: 300 SLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   ++ ++NT+IQGF    + D+A  F  +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + + I IN  C   ++  A+       K G   D     SL+NG C  NR+ +AV 
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L DKMV  G   ++V YN +I    + +    A    + +ER     N+  Y+ +++GLC
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
              RW +A + L  + +K + P V+TY+ L++   K G ++EA +L  +M      PD  
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 182 SFNTVIQGFLVKNETDRAS 200
           ++++++ G  + +  D A+
Sbjct: 297 TYSSLVNGLCLHDRIDEAN 315



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 42/203 (20%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+C    ID A       + KG   DV  Y++LING C   R+++ ++LF +M 
Sbjct: 298 YSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 68  AQGITAELVTYNPLIH------DNWEKQGRFS---------------------------- 93
            +G+ +  VTYN LI       D  + Q  FS                            
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELE 417

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ + + +++ + +L+I  Y+ VI G+C+ G+ EEA      LS KGL P +VTY  ++
Sbjct: 418 KALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMM 477

Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
           +GLC KG++ E + L  +MK++G
Sbjct: 478 SGLCTKGLLHEVEALYTKMKQEG 500



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +++   N   Y   ++   K  ++  A       ++  I  D+  YSSL+NGLC  +
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHD 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA ++FD MV++G  A++V+YN LI+   + +     M L + + +     N   Y+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  + G  ++A++   Q+   G+ P + TYNIL+ GLC  G + +A  +   M+++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               D  ++ TVI+G     + + A S  
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLF 458



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ +IN  C   ++  A+ +  KM+  G   + VT   L++    +     A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++L+  +    Y+ +I  Y+ +ID LC+  R  +A     ++  KG+ P VVTY  L+NG
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           LC      +A +LL  M +K   P+  +++ ++  F VKN
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF-VKN 273



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +    +    + L  KM   GI  +L T+N +I+          A+++L  + 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +      +++G CR  R  +A   +D++ E G  P +V YN +I+ LCK   + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +A     +++ KG  P+  ++  ++ G    +    A+  L
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A++LF  MV       +V +N L+    + +     ++L + +E      ++  ++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VI+  C   +   A   L ++ + G  P  VT   L+NG C++  + +A  L+ +M E 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N +I         + A  F K+
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 111/196 (56%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+  D+A+        + I  +V  Y+SLI+GLC   ++  A++L D+M 
Sbjct: 292 YNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMH 351

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   +++TY+ L+    +      A+ALL  L+    + N+  Y+++I+GLC+ GR E
Sbjct: 352 DRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPE 411

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A+   + L  KG    V TY ++I+  C  GM  EA  +L +M+E GC P++ ++  +I
Sbjct: 412 DAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIII 471

Query: 188 QGFLVKNETDRASSFL 203
           +    K+E D+A   L
Sbjct: 472 RSLFDKDENDKAEKLL 487



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 92/161 (57%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           + +KKG   +V  YSSL++G C    + +A  +F+ M   G+  ++ +YN LI+   + +
Sbjct: 244 AMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIK 303

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              +AM L + +   K   N+  Y+ +IDGLC+ G+   A K +D++ ++G  P ++TY+
Sbjct: 304 MTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYS 363

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            L++ LCK     +A  LL ++K++G  P+  ++  +I G 
Sbjct: 364 SLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGL 404



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 37  CLDVFVYSSL-----INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           C   F++  L     ++  C   ++KEA  +F  M+ +G    +VTY+ L+      +  
Sbjct: 211 CFVSFMFQYLGMMAPVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEV 270

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A ++   + +     +I+ Y+++I+G C++   + A    +++  + ++P VVTYN L
Sbjct: 271 NKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSL 330

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GLCK G I  A KL+ +M ++G  PD  ++++++      +  D+A + L K
Sbjct: 331 IDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTK 384


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G C+  + D A++       + +  DVF Y+ LI+GLC  ++  +A E+  +M
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEM 287

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+T + VT+N ++ D   K G+F  A +LL  +       +   Y+ +I GLC+   
Sbjct: 288 VDRGVTPDTVTFNSIM-DGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQN 346

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A+  +D+    G VP VVTY+IL +GLCK+G I EA +L+ +M  KGC P+  ++NT
Sbjct: 347 VDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNT 406

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G    ++T++A   L+
Sbjct: 407 LIDGLCKASKTEKAYELLE 425



 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y   I+G+CK + +D A       +  G   DV  YS L +GLC   R
Sbjct: 322 MAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGR 381

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA EL  +M  +G T  LVTYN LI    +      A  LL++L    +  ++  Y++
Sbjct: 382 IDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTI 441

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+ GR ++A K ++ + ++G  P V+TY  L+ GLC+ G + EA  +  +M  K 
Sbjct: 442 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 501

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C  D+ ++ +++ G+   + T  A
Sbjct: 502 CTADALAYVSLVNGYCKSSRTKEA 525



 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L    F  +   Y I ++G+CK   +D A+K       +G    V  Y++L+ GLC   R
Sbjct: 427 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR 486

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  +F +MV++  TA+ + Y  L++   +      A  ++  +    Y   I+VY+ 
Sbjct: 487 VDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY---IDVYNA 543

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+ GR +E     + ++ +G VP + TYNI+++GLCK G + EA   L  M   G
Sbjct: 544 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD  S+N +I G    ++   A   L +
Sbjct: 604 CVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 11/203 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  + + Y + I  +C++ +ID A         +G   +V VY+ L    C   RLK+A+
Sbjct: 156 YAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDAL 215

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+F  +     + + + YN +IH +  K     A+  L+ +   K   ++  Y+++IDGL
Sbjct: 216 EIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGL 271

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + ++A + L ++ ++G+ P  VT+N +++GLCK G    A  LL  M E+ C P  
Sbjct: 272 CKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSC 331

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++NT+I G   +   DRA   +
Sbjct: 332 CTYNTLISGLCKQQNVDRAKDLV 354



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E++   +   Y I I+G+CK  + D A       + +G+  D   ++S+++GLC   
Sbjct: 251 EMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAG 310

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A  L   M  +       TYN LI    ++Q    A  L+       +  ++  YS
Sbjct: 311 KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYS 370

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ DGLC+ GR +EA + + ++S KG  P +VTYN LI+GLCK     +A +LL  +   
Sbjct: 371 ILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS 430

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++  ++ G   +   D+A
Sbjct: 431 GFVPDVVTYTIIVDGLCKEGRLDKA 455



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 41/237 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I  +G+CK   ID A +       KG   ++  Y++LI+GLC  ++ ++A 
Sbjct: 362 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAY 421

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL + +V+ G   ++VTY  +I D   K+GR   A+ +++ + +     ++  Y+ +++G
Sbjct: 422 ELLESLVSSGFVPDVVTYT-IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 480

Query: 120 LCRVGRWEEARK----------KLDQLSEKGLV----------------------PGVVT 147
           LCR GR +EA              D L+   LV                      P +  
Sbjct: 481 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV 540

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           YN L++G CK+G + E   +   M  +GC P+  ++N V+ G     + D A  FL+
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLE 597



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 19  INGMCKIREIDSAIK--KGICLDVF--VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +NG CK      A K   GI    +  VY++L++G C   RL E   +F+ M  +G    
Sbjct: 513 VNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 572

Query: 75  LVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           + TYN ++ D   K G+   A   L+++       ++  Y+++IDGL +  + +EAR+ L
Sbjct: 573 IKTYN-IVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 631

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           DQ+ + G+ P  VTYN L+   CK+    +A  +L  M + G  PD+ ++NT+I G    
Sbjct: 632 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 691

Query: 194 N 194
           N
Sbjct: 692 N 692



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 48/239 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G+CK  ++D A          G   DV  Y+ +I+GL   ++ KEA ++ 
Sbjct: 572 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 631

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER------------------- 103
           D+M+  GI  + VTYN L+   + K+ RF  A+ +L+ + +                   
Sbjct: 632 DQMIQAGIPPDAVTYNTLMA-QFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690

Query: 104 -----DKYELNIEV------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                D YEL  E+            Y+ +ID LC+ G  ++A   +D ++  G+    V
Sbjct: 691 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 750

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYNI I+ LCK+G + EA  LL +M       D  S+ TVI G     + DRAS   ++
Sbjct: 751 TYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRASKLARE 806



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKE 58
           +T    + N   Y I I+ +CK   +D A     +     D   Y+++I GLC   +L  
Sbjct: 740 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDR 799

Query: 59  AVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
           A +L  +MVA +G+     T+N LI D + K  R   A+ LL  + +     ++  Y++V
Sbjct: 800 ASKLAREMVAVKGLCITSHTFNLLI-DAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMV 858

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I  LC++ + ++A +  D+++ +G+V   V+Y +LI GLC +G   EA ++L +M    C
Sbjct: 859 ITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 918



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 31/173 (17%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F++M+  G   +  TY+ +I    +      A  +L   +   ++  + VY+++    C
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 122 RVGRWEEA-----------------------RKK--------LDQLSEKGLVPGVVTYNI 150
           + GR ++A                       RK         L +++E+ + P V TYNI
Sbjct: 207 KTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LI+GLCK     +A ++L +M ++G  PD+ +FN+++ G     + +RA S L
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 319



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 35/183 (19%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQT 100
            Y+++I+ LC    LK+A+ L D M   G+ A  VTYN  I D   K+GR   A +LL  
Sbjct: 716 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFI-DRLCKEGRLDEASSLLSE 774

Query: 101 LE--RDKYE-------------------------------LNIEVYSLVIDGLCRVGRWE 127
           ++  RD+                                 +    ++L+ID   +  R +
Sbjct: 775 MDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLD 834

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  + ++G  P V+TYN++I  LCK   + +A +L  +M  +G    S S+  +I
Sbjct: 835 EALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI 894

Query: 188 QGF 190
            G 
Sbjct: 895 YGL 897


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 8/203 (3%)

Query: 11   NFHVYGIRINGMCKIREIDSAIK-------KGICL-DVFVYSSLINGLCTFNRLKEAVEL 62
            N  ++ + I G+C  R++DSA++        G C  DVF YS++++ L    ++ +A  L
Sbjct: 911  NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRL 970

Query: 63   FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             + MV++G +  +VTY+ L+H   +      A ALLQ + R     NI  Y+ +IDG C+
Sbjct: 971  VEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK 1030

Query: 123  VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            +GR +EA   L+++ + G  P VVTY +L++  CK G   +A  L+  M EKG  P+  +
Sbjct: 1031 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 183  FNTVIQGFLVKNETDRASSFLKK 205
            +N+++  F  K+E +RA   L  
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSS 1113



 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 109/199 (54%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK + +  A       +K     DV  Y+S+++GLC   R+ +A  LFD+M
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A G+  ++VTY+ +IH   +     SA  +L+ ++  K   ++  YS +I+GLC+ G  
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++   G  P +VTYN LI+GLCK   + +A ++L  M+++ C PDS ++  +
Sbjct: 597 DKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCL 656

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G    +  + A   L++
Sbjct: 657 INGLCNASRLEEAWRVLRE 675



 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 4/174 (2%)

Query: 18   RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
            +++  C++  ++  + KG   +V  YSSL++GLC   +L EA  L  +M   G +  +VT
Sbjct: 963  KVDDACRL--VEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVT 1020

Query: 78   YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            YN +I D   K GR   A  LL+ +     + N+  Y++++D  C+ G+ E+A   ++ +
Sbjct: 1021 YNTII-DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 1079

Query: 137  SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             EKG VP + TYN L++  CKK  +  A +LL  M +KGC P+  S+NTVI G 
Sbjct: 1080 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133



 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 9/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +  F  N   Y   ++G CK   +++A       + +G   DV  Y+++INGLC  +
Sbjct: 255 EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLD 314

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ EA  + DKM+ +G    ++TY  L+ D + + G    A+ L++ +    Y  N   Y
Sbjct: 315 QVDEACRVMDKMIQRGCQPNVITYGTLV-DGFCRVGDLDGAVELVRKMTERGYRPNAITY 373

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++   CR    E A + L  + + G  P  + Y+ +I+G CK G + EA  LL QM  
Sbjct: 374 NNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR 433

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +GC PD    +T+I         D A   L+ ++
Sbjct: 434 RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 8/205 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
            + E     N   Y   ++G+CK R  D A         K+G   D+  Y+++I+GLC   
Sbjct: 1184 IQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSK 1243

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            R+  A +LF +M++ G+  + VTY+ +I    + +    A  +L+ + ++ ++     Y 
Sbjct: 1244 RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 1303

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +IDG C+ G  ++A + L  L  KG  P VVT++I I+ L K+G + +A +LL  M   
Sbjct: 1304 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA 1363

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PD+ ++NT+++GF   + T+ A
Sbjct: 1364 GLVPDTVTYNTLLKGFCDASLTEDA 1388



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 108/199 (54%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+ K   +D AI+        G   +VF Y+++++G C  NR++ A+ L ++M
Sbjct: 232 TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 291

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   ++V+Y  +I+   +      A  ++  + +   + N+  Y  ++DG CRVG  
Sbjct: 292 VTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 351

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + + +++E+G  P  +TYN +++  C++  +  A ++L  M + GC PD+ +++T+
Sbjct: 352 DGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF    +   A   L++
Sbjct: 412 ISGFCKAGKLREAHDLLEQ 430



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNR 55
           ++  +  K +  V+   + G+C   +   A+       K    D   Y+++INGL   +R
Sbjct: 186 EMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDR 245

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A+ L ++MV  G    + +YN ++H   +     +A+ LL+ +       ++  Y+ 
Sbjct: 246 LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTT 305

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GLC++ + +EA + +D++ ++G  P V+TY  L++G C+ G +  A +L+ +M E+G
Sbjct: 306 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             P++ ++N ++  F  +N+ +RA   L+
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQ 394



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 12/211 (5%)

Query: 1    FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLING 49
            + L E+   G    N   Y + ++  CK  + + AI       +KG   ++F Y+SL++ 
Sbjct: 1038 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 1097

Query: 50   LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
             C  + ++ A +L   M+ +G    +V+YN +I    +       + LL+ +  +    +
Sbjct: 1098 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157

Query: 110  IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
            I  ++ +ID +C+  R + A +  + + E G  P +VTYN L++GLCK     +A+ LL 
Sbjct: 1158 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLR 1217

Query: 170  QM-KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M +++GC PD  ++NTVI G       DRA
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 1248



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CK   +RE    ++  I++G   DV   S+LI+ LC    +  A EL    +
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                 ++V Y+ LIH   + +    A + L  + +++   ++  Y+ V+DGLC+  R  
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    D++   G++P VVTY+I+I+  CK   +  A K+L +MKE  C PD  +++ +I
Sbjct: 528 DAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALI 587

Query: 188 QGFLVKNETDRA 199
            G       D+A
Sbjct: 588 NGLCKAGTVDKA 599



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+ ++ N   Y   ++  C+  +++ A       I+ G   D   YS++I+G C   +
Sbjct: 361 MTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGK 420

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+EA +L ++M+ +G   ++   + LI    +     SA  LL+         ++  YS+
Sbjct: 421 LREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSI 480

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LC+  R  EA   LD + +    P VVTYN +++GLCK   I +A  L  +M+  G
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  +++ VI  F   N  D A   L++
Sbjct: 541 VMPDVVTYSIVIHSFCKDNNLDSAFKMLER 570



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 11   NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            N   Y   I G+CK  ++   +             D+  ++++I+ +C   R+  A ELF
Sbjct: 1122 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 1181

Query: 64   DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCR 122
            + +   G T  LVTYN L+H   + +    A  LL+ + R +    +I  Y+ VIDGLC+
Sbjct: 1182 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK 1241

Query: 123  VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
              R + A K   Q+   GL P  VTY+I+I+ LCK   + EA+ +L  M + G  P + +
Sbjct: 1242 SKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT 1301

Query: 183  FNTVIQGFLVKNETDRASSFLK 204
            + T+I GF      D+A   L+
Sbjct: 1302 YGTLIDGFCKTGNLDKALEILQ 1323



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 8/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           E ++ G+   Y   I+G  +  +I       D   +KG+     V+ S++ GLC   +  
Sbjct: 154 EGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCS 213

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +AV  F +M ++    + VTYN +I+   +      A+ LL+ +  + +  N+  Y+ V+
Sbjct: 214 DAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G C+  R E A   L+Q+  +G  P VV+Y  +INGLCK   + EA +++ +M ++GC 
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  ++ T++ GF    + D A   ++K
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRK 360



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
            +T      N   Y   I+G CK+  ID A       +  G   +V  Y+ L++  C   +
Sbjct: 1009 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             ++A+ L + MV +G    L TYN L+    +K     A  LL ++ +     N+  Y+ 
Sbjct: 1069 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 1128

Query: 116  VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            VI GLC+  +  E    L+Q+     VP +VT+N +I+ +CK   +  A +L   ++E G
Sbjct: 1129 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 1188

Query: 176  CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P+  ++N+++ G       D+A   L++
Sbjct: 1189 CTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 1218



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 10/191 (5%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I+G+CK + +D A K        G+  D   YS +I+ LC +  + EA  + + M
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            +  G     +TY  LI D + K G    A+ +LQ L       ++  +S+ ID L + GR
Sbjct: 1291 LKNGFDPGAITYGTLI-DGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              +A + L+ +   GLVP  VTYN L+ G C   +  +A  L   M++ GC PD+ ++ T
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTT 1409

Query: 186  VIQGFLVKNET 196
            ++ G LV  ++
Sbjct: 1410 LV-GHLVDKKS 1419



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 1/168 (0%)

Query: 39   DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            ++F ++ LI+GLC    +  A EL  +M   G+   ++ +N +I      +   SA+ L 
Sbjct: 876  NMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELF 935

Query: 99   QTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + +E       ++  YS ++D L + G+ ++A + ++ +  KG  P VVTY+ L++GLCK
Sbjct: 936  KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCK 995

Query: 158  KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G + EA  LL +M   GC P+  ++NT+I G       D A   L++
Sbjct: 996  AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEE 1043



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+  CK   +DSA      +K+  C+ DV  YS+LINGLC    + +A ++F +M
Sbjct: 547 TYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEM 606

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G    LVTYN LI    +      A  +L+ + +     +   Y+ +I+GLC   R 
Sbjct: 607 LGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRL 666

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           EEA + L ++ +KG +P  +TY  L+  L K   +   ++LL +M+
Sbjct: 667 EEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 10/195 (5%)

Query: 19   INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV-AQG 70
            I+ MCK   +D A +        G   ++  Y+SL++GLC   R  +A  L  +M   QG
Sbjct: 1165 IDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG 1224

Query: 71   ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
             + +++TYN +I D   K  R   A  L   +  D    +   YS+VI  LC+    +EA
Sbjct: 1225 CSPDIITYNTVI-DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 130  RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
               L+ + + G  PG +TY  LI+G CK G + +A ++L  +  KG +PD  +F+  I  
Sbjct: 1284 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDW 1343

Query: 190  FLVKNETDRASSFLK 204
               +    +A   L+
Sbjct: 1344 LSKRGRLRQAGELLE 1358



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++F  + L+N L   ++  +A +LF   +      + VTY+ LI           A  L 
Sbjct: 125 EIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELF 184

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + R   + +  V+  ++ GLC  G+  +A     ++S K   P  VTYN +INGL K 
Sbjct: 185 DEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKS 243

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + +A +LL +M + G  P+  S+NTV+ GF   N  + A   L++
Sbjct: 244 DRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 290



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CKI +++ A        K+    D   Y+ LINGLC  +RL+EA  + 
Sbjct: 614 NLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVL 673

Query: 64  DKMVAQGITAELVTYNPLI 82
            +M  +G   + +TY  L+
Sbjct: 674 REMKDKGCLPDRMTYGTLL 692



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + T+ ILI+GLC+ G I  A +LL +M   G   +    N VI+G     + D A   
Sbjct: 875 PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 203 LKK 205
            K+
Sbjct: 935 FKE 937



 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 121  CRVGRWEEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C  G  + A  +   +S + GL PGV  ++ +I+ L + G++ EA+ L++ M    C P 
Sbjct: 1533 CHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMP---CKPS 1589

Query: 180  STSFNTVIQGFLVKNETDRA 199
            + ++N ++  + +  + +RA
Sbjct: 1590 AATWNCLLSAYKICGDFERA 1609


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 44/234 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+GMCK + ++ A       + KGI  +V  YS+LI+G  T  +LK+AV+
Sbjct: 224 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVD 283

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---------------------------- 93
           LF+KM+++ I  ++ T+N L+ D + K G+ S                            
Sbjct: 284 LFNKMISENIKPDVYTFNILV-DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342

Query: 94  --------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ALL  L+      N+  Y+++IDGLC  G+ E+AR   + L  KG    V
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITV 402

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           VTY ++  G CKKG+  EA  LL +M+E GC PD+ ++  +      K E D A
Sbjct: 403 VTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMA 456



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C++  I  A       +K G   +   +++LI GLC   ++ +A+   DK+VA 
Sbjct: 127 ILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVAL 186

Query: 70  GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G     ++Y  LI D   K G   +A+ LL+ ++    + N+ +YS +IDG+C+     +
Sbjct: 187 GFQFNQISYGTLI-DGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVND 245

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A     ++  KG+ P VVTY+ LI+G    G + +A  L  +M  +   PD  +FN ++ 
Sbjct: 246 AFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVD 305

Query: 189 GF 190
            F
Sbjct: 306 VF 307



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           LIN  C    +  A  +F K++  G     +T+  LI     K     A+     L    
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           ++ N   Y  +IDGLC+VG    A   L ++  K + P VV Y+ +I+G+CK   + +A 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAF 247

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFL----VKNETDRASSFLKKNM 207
            L  +M  KG  P+  +++ +I GF     +K+  D  +  + +N+
Sbjct: 248 DLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENI 293



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +++  YSS      + N + +AV LF+ ++ Q  T   + +N ++    + +   + + L
Sbjct: 50  INLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYL 109

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + +E    + N+   +++I+  C++G    A     ++ + G  P  +T+  LI GLC 
Sbjct: 110 SKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCL 169

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG I +A     ++   G   +  S+ T+I G     ET  A   L++
Sbjct: 170 KGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRR 217



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 42/164 (25%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++ +CK   +D A+        +GI  ++  Y+ LI+GLCT  +L++A  +F
Sbjct: 331 NIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIF 390

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + ++ +G    +VTY  + +                                   G C+ 
Sbjct: 391 EDLLVKGYDITVVTYIVMFY-----------------------------------GFCKK 415

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           G ++EA   L ++ E G +P   TY ++   L KKG    A+KL
Sbjct: 416 GLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKL 459


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     +F  Y   I G C+ +++DSA K       KG   +   Y+ LI+GLC   R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA++LF KM        + TY  LI      + +  A+ L++ +E    + NI  Y++
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC   ++E+AR+ L Q+ EKGL+P V+TYN LING CK+GMI +A  ++  M+ + 
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++ ++N +I+G+  K+   +A   L K
Sbjct: 424 LSPNTRTYNELIKGY-CKSNVHKAMGVLNK 452



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 43/241 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC------KIREI-DSAIKKGICLDVFVYSSLINGLC--- 51
           ++ E   K N H Y + I+ +C      K RE+    ++KG+  +V  Y++LING C   
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 52  ----------------------TFNRL---------KEAVELFDKMVAQGITAELVTYNP 80
                                 T+N L          +A+ + +KM+ + +  ++VTYN 
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           LI D   + G F +   L +L  D+  +  +  Y+ +ID LC+  R EEA    D L +K
Sbjct: 468 LI-DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VV Y  LI+G CK G + EA  +L +M  K C P+S +FN +I G     +   A
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586

Query: 200 S 200
           +
Sbjct: 587 T 587



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGICLDVFVYSSLINGLCTFNRL 56
           +  ++   N   Y   I G CK      +  ++  +++ +  DV  Y+SLI+G C     
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
             A  L   M  +G+  +  TY  +I    + +    A  L  +LE+     N+ +Y+ +
Sbjct: 479 DSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG C+ G+ +EA   L+++  K  +P  +T+N LI+GLC  G + EA  L  +M + G 
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGL 598

Query: 177 FPDSTSFNTVIQGFLVKNETDRASS 201
            P  ++   +I   L   + D A S
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYS 623



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK + +       DS  +KG+  +V +Y++LI+G C   ++ EA  + +KM
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +++      +T+N LIH          A  L + + +   +  +   +++I  L + G +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A  +  Q+   G  P   TY   I   C++G +++A+ ++ +M+E G  PD  +++++
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G+    +T+ A   LK+
Sbjct: 679 IKGYGDLGQTNFAFDVLKR 697



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  EQ+    N  +Y   I+G CK  ++D A       + K    +   +++LI+GLC 
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +LKEA  L +KMV  G+   + T   LIH    K G F  A +  Q +     + +  
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIH-RLLKDGDFDHAYSRFQQMLSSGTKPDAH 638

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+  I   CR GR  +A   + ++ E G+ P + TY+ LI G    G    A  +L +M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
           ++ GC P   +F ++I+  L
Sbjct: 699 RDTGCEPSQHTFLSLIKHLL 718



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 42/228 (18%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E ++K     Y   +N + +   +D         ++  +C +++ Y+ ++NG C    ++
Sbjct: 176 ELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVE 235

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------------------------ 93
           EA +   K+V  G+  +  TY  LI    +++   S                        
Sbjct: 236 EANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295

Query: 94  -----------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                      AM L   ++ D+    +  Y+++I  LC   R  EA   + ++ E G+ 
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P + TY +LI+ LC +    +A +LL QM EKG  P+  ++N +I G+
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMAL 97
           Y++L+N L  F  + E  +++ +M+   +   + TYN +++      N E+  ++ +  +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              L+ D +      Y+ +I G C+    + A K  +++  KG     V Y  LI+GLC 
Sbjct: 246 EAGLDPDFF-----TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCV 300

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              I EA  L V+MK+  CFP   ++  +I+          A + +K+
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKE 348



 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA-QGITAELVTYNPLIHDNW 86
           ++  ++  +  +   Y  LI G+C    L+ A ++FD M   +GI+   + +N L+    
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + +    A  ++  +    +   +E   ++I GL + G  E        L + G     +
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + I+I+G+ K+G++    +L   M++ GC   S +++ +I+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 50  LCTFNRLKE---AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY 106
           LC  + + E    VEL +KMV   +T    +Y  LI    E      A  +   ++R++ 
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791

Query: 107 ELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
               E V++ ++   C++ +  EA K +D +   G +P + +  +LI GL KKG      
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGT 851

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQG 189
            +   + + G + D  ++  +I G
Sbjct: 852 SVFQNLLQCGYYEDELAWKIIIDG 875



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E     N   Y   I G+C++  +  A K        +GI     V+++L++  C   
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  EA ++ D M+  G   +L +   LI   ++K  +    ++ Q L +  Y  +   + 
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWK 870

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++IDG+ + G  E   +  + + + G      TY++LI G
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 111/201 (55%), Gaps = 8/201 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD + E+    N   Y   ING CK+R +D A+        K +  D   Y+ L++GL  
Sbjct: 339 FDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSK 398

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R     +L + M A G  A+L+TYN L+ D ++ +    A+AL Q +       NI  
Sbjct: 399 SGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRT 458

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++DGLC+ GR + A++    LS KG  P + TYNI+I+GLCK+G + EA+ LL +M 
Sbjct: 459 YNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMV 518

Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
                P+  +F+T+++  LVK
Sbjct: 519 NNNYLPNYITFDTIVRAILVK 539



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CKI +   AI       K  +  ++ +Y+++I+GLC    + EA  L  +MV
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMV 237

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGR 125
             GI  ++ +YN +IH  +   GRF A   L  + + R K   ++  ++++IDGLC++GR
Sbjct: 238 ENGIELDVYSYNSMIH-GFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGR 296

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA   +  + ++G  P +V+YN L+NG C  G + EA ++  +M E+   P+  S+ T
Sbjct: 297 VSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCT 356

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+      D A   L +
Sbjct: 357 LINGYCKVRMVDEAMVLLTE 376



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G   D   Y ++INGLC   + ++A+++F KM    +   L+ YN +I D   KQG 
Sbjct: 167 VDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVI-DGLCKQGL 225

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYN 149
              A  L   +  +  EL++  Y+ +I G C VGR++ A K LD++  +G V P V T+N
Sbjct: 226 VDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFN 285

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ILI+GLCK G + EA  ++  M ++G  PD  S+N ++ G+ +      A     K
Sbjct: 286 ILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDK 341



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 42/235 (17%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + + I I+G+CK+  +  A       IK+G   D+  Y++L+NG C    + EA ++FDK
Sbjct: 282 YTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDK 341

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV +     +++Y  LI+   + +    AM LL  +       +   Y+ ++DGL + GR
Sbjct: 342 MVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGR 401

Query: 126 -----------------------------------WEEARKKLDQLSEKGLVPGVVTYNI 150
                                              +++A      + E G+ P + TYNI
Sbjct: 402 SLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNI 461

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L++GLCK G +  A ++   +  KGC P+  ++N +I G   +   D A + L K
Sbjct: 462 LLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYK 516



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 42/194 (21%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRL 56
           ++   K +   + I IN   ++ ++  A       +K G  +DV + ++L+ GLC   R+
Sbjct: 97  SKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRV 156

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            EAV L  + V +G                    RF  +                 Y  +
Sbjct: 157 LEAVSLLHEYVDRGF-------------------RFDEVC----------------YGTI 181

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+GLC++G+  +A +   ++ +  + P ++ YN +I+GLCK+G++ EA  L  +M E G 
Sbjct: 182 INGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGI 241

Query: 177 FPDSTSFNTVIQGF 190
             D  S+N++I GF
Sbjct: 242 ELDVYSYNSMIHGF 255



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQT 100
           ++ L++ L    R    V L+  + ++  I   L+T++ LI + + + G+   A +LL  
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILI-NAFAQLGQMGFAFSLLGN 130

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           + +  +++++ + + ++ GLC  GR  EA   L +  ++G     V Y  +INGLCK G 
Sbjct: 131 ILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGK 190

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +A ++  +MK+   +P+   +NTVI G   +   D A
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEA 229



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 88  KQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           K  R++A+  L T+ + K  +  ++  +S++I+   ++G+   A   L  + + G    V
Sbjct: 81  KLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDV 140

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                L+ GLC KG ++EA  LL +  ++G   D   + T+I G     +T  A     K
Sbjct: 141 RILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPK 200


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y I ING CKI+++D A+        K I  DV  Y+SLI+GLC   ++  A++L
Sbjct: 334 ANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKL 393

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            D+M  +G+  + +TYN ++    +      A+ALL  ++ +  + ++  Y+++IDGLC+
Sbjct: 394 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCK 453

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A+   + L  KG    V TY ++I G C   +  +A  LL +M++ GC P++ +
Sbjct: 454 GGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKT 513

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I     K+E D A   L++
Sbjct: 514 YEIIILSLFEKDENDMAEKLLRE 536



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 122/240 (50%), Gaps = 44/240 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+ MCK++ ++ A       + KGI  DV  YS+LI+G C   +L +A+ 
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---------------------------- 93
           LF+KM+++ I  ++ T++ L+ D + K+GR                              
Sbjct: 253 LFNKMISEEINPDVYTFSILV-DGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311

Query: 94  --------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A ++  T+ +     N++ Y+++I+G C++ + +EA     ++  K ++P V
Sbjct: 312 CLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDV 371

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN LI+GLCK G I  A KL+ +M ++G   D  ++N+++      ++ D+A + L K
Sbjct: 372 VTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 431



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  +    + + + I ++G CK   +  A       +K+GI  DV  Y SL++G C   +
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQ 316

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A  +F+ M   G+TA + +YN +I+   + +    AM L + +       ++  Y+ 
Sbjct: 317 VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+ G+   A K +D++ ++G+    +TYN +++ LCK   + +A  LL +MK++G
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 176 CFPDSTSFNTVIQGF 190
             PD  ++  +I G 
Sbjct: 437 IQPDMYTYTILIDGL 451



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 102/201 (50%), Gaps = 46/201 (22%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  ING+CK+ +  +A++       K +  +V +Y+++I+ +C    + EA 
Sbjct: 157 FHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L+ +MV++GI+ ++VTY+ LI                                    G 
Sbjct: 217 DLYSEMVSKGISPDVVTYSALI-----------------------------------SGF 241

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C +G+  +A    +++  + + P V T++IL++G CK+G + EA  +L  M ++G  PD 
Sbjct: 242 CILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDV 301

Query: 181 TSFNTVIQGFLVKNETDRASS 201
            ++ +++ G+ +  + ++A S
Sbjct: 302 VTYCSLMDGYCLVKQVNKAKS 322



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG   +    ++LI GLC   ++ +A+   DK+VA G     V Y  LI+   +    
Sbjct: 118 LKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQT 177

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ LL+ ++    + N+ +Y+ +ID +C+V    EA     ++  KG+ P VVTY+ L
Sbjct: 178 SAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSAL 237

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I+G C  G + +A  L  +M  +   PD  +F+ ++ GF  +     A + L   M
Sbjct: 238 ISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMM 293



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +CK  ++D AI        +GI  D++ Y+ LI+GLC   RLK+A  +F+ ++
Sbjct: 409 YNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLL 468

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G    + TY  +I    +      A+ALL  +E +    N + Y ++I  L      +
Sbjct: 469 VKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDEND 528

Query: 128 EARKKLDQLSEKGLVPG 144
            A K L ++  +GL+ G
Sbjct: 529 MAEKLLREMIARGLLFG 545



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 53/113 (46%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A++L + +E +    ++  ++++I+   ++G    +      + +KG  P  +T   LI
Sbjct: 74  TAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLI 133

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GLC KG I +A     ++   G   +   + T+I G     +T  A   L++
Sbjct: 134 KGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRR 186



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  L ++  ++ A     ++   G+   +VT+NILIN   + G    +  +   + +KG
Sbjct: 62  ILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKG 121

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++ +  T+I+G  +K +  +A  F  K
Sbjct: 122 YEPNAITLTTLIKGLCLKGQIHQALHFHDK 151


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 115/198 (58%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK + +D A+        K +  +   Y+SLI+GL  + R+ +A +L ++M 
Sbjct: 347 YSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMH 406

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G  A+++TY+ L+    +      A+ L+  ++    + NI  Y++++DGLC+ GR +
Sbjct: 407 NRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLK 466

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A+     L  KG    V  YN+++NGLCK+G+  EA  L+ +M++ GC PD+ ++ T++
Sbjct: 467 DAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLV 526

Query: 188 QGFLVKNETDRASSFLKK 205
           +     ++ D+A   L++
Sbjct: 527 RALFENDKNDKAVKLLRE 544



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 9/191 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   I+ +CK + +  A       I K I  DV  Y++LI G     RLKEAV 
Sbjct: 201 QPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVG 260

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF++M+ + I  ++ T+N L+ D   K+G    A  +L  + +   + NI  Y+ ++DG 
Sbjct: 261 LFNQMLLKNIKPDVYTFNILV-DGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
             V +  +A    + ++ +G+ P V +Y+I+INGLCK  M+ EA  L  +M  K   P++
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNT 379

Query: 181 TSFNTVIQGFL 191
            ++N++I G L
Sbjct: 380 VTYNSLIDGLL 390



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 2/194 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG  I G  K  +   +  + K I  DV+ ++ L++GLC    +K+A  +   M+ QG+
Sbjct: 246 IYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGV 305

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            + +VTYN L+   +  +    A  +  T+ R     +++ YS++I+GLC+    +EA  
Sbjct: 306 DSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVN 365

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  K + P  VTYN LI+GL K G I +A  L+ +M  +G   D  ++++++    
Sbjct: 366 LFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALC 425

Query: 192 VKNETDRASSFLKK 205
             ++ D+A + + K
Sbjct: 426 KNHQVDKAITLITK 439



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 12/214 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRIN----GMC---KIREI----DSAIKKGICLDVFVYSSLING 49
           F +  + FK  FH   + I     G+C   K+RE     D  I KG  LD   Y +LING
Sbjct: 119 FSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLING 178

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC     + A+++  K+    +   +V YN +I    + +    A  L   +   +   +
Sbjct: 179 LCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPD 238

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I G   VGR +EA    +Q+  K + P V T+NIL++GLCK+G + +A  +L 
Sbjct: 239 VVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLA 298

Query: 170 QMKEKGCFPDSTSFNTVIQG-FLVKNETDRASSF 202
            M ++G   +  ++N+++ G FLVK E      F
Sbjct: 299 VMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  K + + + I ++G+CK  E+  A       IK+G+  ++  Y+SL++G     +  +
Sbjct: 268 KNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENK 327

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M  +G+T ++ +Y+ +I+   + +    A+ L + +       N   Y+ +ID
Sbjct: 328 ATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLID 387

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR  +A   ++++  +G    V+TY+ L++ LCK   + +A  L+ ++K++G  P
Sbjct: 388 GLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQP 447

Query: 179 DSTSFNTVIQGFLVKN 194
           +  ++  ++ G L KN
Sbjct: 448 NIYTYTILVDG-LCKN 462



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L ++  +  A     Q+  K + P + T+NILIN  C  G +  A  +L ++ 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           + G  PD+ +  T+I+G  +  +   A  F
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHF 156


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CKI+ I+ A       IK G   DV  +++LI G C   R   A ELF  M 
Sbjct: 359 YTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMH 418

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G    L T   ++    + Q    A++L   +E+   +LNI +YS+++DG+C  G+  
Sbjct: 419 KYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLN 478

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +    L  KGL   V  Y I+ING  K+G++ +A+ LL  M+E GC PDS ++N  +
Sbjct: 479 TALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFV 538

Query: 188 QGFLVKNETDRASSFL 203
           QG + + E  R+  +L
Sbjct: 539 QGLVAEREIARSIKYL 554



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 15  YGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I ING+C        +  +D   K G   DV  Y  LINGLC   +  EAV    KM 
Sbjct: 149 FTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKME 208

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +     +V Y+ ++ D   K G  S A+ L   +     + N+  Y+ +I GLC  GRW
Sbjct: 209 ERNWNPNVVVYSTVM-DGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRW 267

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA   LD++ + G++P + + NIL++ LCK+G IM+A  ++  M   G  PD  ++N++
Sbjct: 268 KEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSL 327

Query: 187 IQGFLVKNETDRAS 200
           I  + ++N+ D A+
Sbjct: 328 IDRYCLQNQMDEAT 341



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 9/187 (4%)

Query: 9   KGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +  +  + IN +C ++ +        + +K G+   V  ++ LINGLC    +  AVE
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVE 167

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L D +   G  +++ TY  LI +   K G+ S A+  L+ +E   +  N+ VYS V+DGL
Sbjct: 168 LVDHVEKTGYRSDVKTYGVLI-NGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGL 226

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   EA     ++S KG+ P +VTY  LI GLC  G   EA  LL +M + G  PD 
Sbjct: 227 CKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDL 286

Query: 181 TSFNTVI 187
            S N ++
Sbjct: 287 QSLNILV 293



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++E+ S++  GI  D F+ + +IN LC    +     +   M+  G+   +VT+  LI+ 
Sbjct: 98  VKEMHSSL--GIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILING 155

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              K     A+ L+  +E+  Y  +++ Y ++I+GLC++G+  EA   L ++ E+   P 
Sbjct: 156 LCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPN 215

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           VV Y+ +++GLCK G++ EA  L ++M  KG  P+  ++  +IQG         A S L 
Sbjct: 216 VVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLD 275

Query: 205 KNM 207
           + M
Sbjct: 276 EMM 278



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 107/208 (51%), Gaps = 17/208 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ +   YG+ ING+CK+ +   A+       ++    +V VYS++++GLC    + EA+
Sbjct: 177 YRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEAL 236

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            L  +M  +GI   LVTY  LI        W++ G     +LL  + +     +++  ++
Sbjct: 237 GLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAG-----SLLDEMMKMGVMPDLQSLNI 291

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D LC+ G+  +A+  +  +   G VP V TYN LI+  C +  + EA ++   M  +G
Sbjct: 292 LVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRG 351

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C PD  ++ ++I G+      ++A   L
Sbjct: 352 CLPDIVAYTSLIHGWCKIKNINKAMHLL 379



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ +  N  VY   ++G+CK   +  A+        KGI  ++  Y+ LI GLC F R
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGR 266

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            KEA  L D+M+  G+  +L + N L+ D   K+G+   A +++  +       ++  Y+
Sbjct: 267 WKEAGSLLDEMMKMGVMPDLQSLNILV-DVLCKEGKIMQAKSVIGFMILVGEVPDVFTYN 325

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID  C   + +EA +  + +  +G +P +V Y  LI+G CK   I +A  LL +M + 
Sbjct: 326 SLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKV 385

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++ T+I GF
Sbjct: 386 GFTPDVVTWTTLIGGF 401



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 86/161 (53%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+SLI+  C  N++ EA  +F+ MV++G   ++V Y  LIH   + +    AM LL
Sbjct: 320 DVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLL 379

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + +  +  ++  ++ +I G C+VGR   A++    + + G VP + T  I+++GLCK 
Sbjct: 380 DEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKS 439

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++ EA  L   M++     +   ++ ++ G     + + A
Sbjct: 440 QLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA 480



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y I ++GMC   ++++A++       KG+ ++V+ Y+ +ING      L +A +L 
Sbjct: 460 NIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLL 519

Query: 64  DKMVAQGITAELVTYNPLIH 83
             M   G   +  TYN  + 
Sbjct: 520 SNMEENGCMPDSCTYNVFVQ 539


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 13/202 (6%)

Query: 11  NFHVYGIRINGMC---KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           NF    I IN +C   ++RE  SA+    ++G   DV  Y+SLI GLC  +R+ EA  LF
Sbjct: 125 NFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLF 184

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL--ERDKYEL----NIEVYSLVI 117
            +M   G    +VTY  LI           A+ L Q +      Y +    NI  Y+++I
Sbjct: 185 IRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIII 244

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D LC++G+W+EA++  +++ ++G+ P VVT++ LI+ LCK+GM++EA K L  M  +G  
Sbjct: 245 DELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIV 304

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD  +F ++I+GF +  + D A
Sbjct: 305 PDLFTFTSLIEGFCLVGDLDSA 326



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 42/229 (18%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C + ++DSA         KG   DV  Y+ LI G C    ++EA++L+++M+  G 
Sbjct: 314 IEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGK 373

Query: 72  TAELVTYNPLIH----------------------------------DNWEKQG-RFSAMA 96
             ++ T+  L+                                   D   K G  F AM 
Sbjct: 374 WPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAME 433

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   L+    +L+IE ++ +IDGLC+  + E A +  ++LS++GL P VVTY I+ING C
Sbjct: 434 LFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFC 493

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K G +  A+ L   M+E GC P+  +++ ++ GF   N+ +     L K
Sbjct: 494 KNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHK 542



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------KGICL-------DVFVYSSLINGLCTFNRLK 57
           N   YG  I G+C+   I+ A+K       G          ++F Y+ +I+ LC   + K
Sbjct: 195 NVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWK 254

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLV 116
           EA  LF++MV QG+  ++VT++ LI D   K+G    A   L+T+       ++  ++ +
Sbjct: 255 EAKRLFNEMVDQGVRPDVVTFSALI-DTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSL 313

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+G C VG  + A++    +  KG  P V++Y +LI G CK   + EA KL  +M   G 
Sbjct: 314 IEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGK 373

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
           +PD  +F  +++G  +  +   A
Sbjct: 374 WPDMKTFCVLLKGLFLAGKVGDA 396



 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q  + +   +   I+ +CK        + +++ + +GI  D+F ++SLI G C   
Sbjct: 262 EMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVG 321

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ELF  M ++G   ++++Y  LI+   +      AM L   + R     +++ + 
Sbjct: 322 DLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFC 381

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++ GL   G+  +A+K    +    +   +   ++ ++GLCK G + EA +L  ++K  
Sbjct: 382 VLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSY 441

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               D  SFN +I G     + + A    +K
Sbjct: 442 NMKLDIESFNCLIDGLCKARKLETAWELFEK 472



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++++ S  ++GLC    L EA+ELF+++ +  +  ++ ++N LI    + +   +A  L 
Sbjct: 411 NLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELF 470

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + L ++  + ++  Y ++I+G C+ G+ + A      + E G  P ++TY+ L++G  K 
Sbjct: 471 EKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKN 530

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
             + E  KLL +M +K     + S  T+++  + K+E  R
Sbjct: 531 NKLEEVVKLLHKMIQKD-VSLAASIYTIVEDMVSKDEKCR 569



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A++ FD M+       ++++N L+    + +      +L + +       N    +++I
Sbjct: 79  QALQFFDLMMRS-----IISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILI 133

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           + LC V R  E    +  +  +G +P VVTY  LI GLC +  I EA +L ++M++ GC+
Sbjct: 134 NCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCW 193

Query: 178 PDSTSFNTVIQGF 190
           P+  ++ T+I+G 
Sbjct: 194 PNVVTYGTLIKGL 206



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQGRFSA 94
            +  ++ L+  L       +   L+ KM   G++    T N LI+     N  ++G  SA
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREG-LSA 148

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           MA    + R  Y  ++  Y+ +I GLC   R  EA +   ++ + G  P VVTY  LI G
Sbjct: 149 MA---GIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKG 205

Query: 155 LCKKGMIMEADKLLVQMKEK------GCFPDSTSFNTVI 187
           LC+ G I  A KL  +M          C P+  S+N +I
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIII 244



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L     K +   +   I+G+CK R++++A        ++G+  DV  Y  +ING C   
Sbjct: 437 ELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNG 496

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A  LF  M   G T  L+TY+ L+H  ++       + LL  + +    L   +Y+
Sbjct: 497 QVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYT 556

Query: 115 LVIDGLCRVGRWEEARKKLDQL 136
           +V D    V + E+ R+ LD L
Sbjct: 557 IVED---MVSKDEKCREWLDIL 575



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K+G  ++   LQ    D    +I  ++L++  L ++  + +      ++   GL P   T
Sbjct: 71  KKGNITSTQALQFF--DLMMRSIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFT 128

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            NILIN LC    + E    +  +  +G  PD  ++ ++I+G  +++    A+
Sbjct: 129 LNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEAT 181


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G CK + +D  +       ++G+  +   Y++LI GL        A E+F +MV
Sbjct: 399 YSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMV 458

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+ G+ 
Sbjct: 459 SDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+       LS KG+ P VV YN +I+G C+KG   EAD L  +MKE G  P+S  +NT+
Sbjct: 518 EDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 577

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+  L   + + ++  +K+
Sbjct: 578 IRARLRDGDREASAELIKE 596



 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING C    +D A       + K    DV  YS+LI G C   R+ E +ELF +M
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM 422

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTY  LI   ++      A  + + +  D    NI  Y+ ++DGLC+ G+ 
Sbjct: 423 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A    + L    + P + TYNI+I G+CK G + +   L   +  KG  PD  ++NT+
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 542

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K   + A +  K+
Sbjct: 543 ISGFCRKGSKEEADALFKE 561



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C  + I  A+         G   +   +++LI+GL   N+  EAV L D+MVA+G 
Sbjct: 158 LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGC 217

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A  LL  +E+ K E  + +Y+ +IDGLC+    ++A  
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALN 277

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M E+   PD  +F+ +I  F+
Sbjct: 278 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + +D A+        KGI  +V  YSSLI+ LC + R  +A  L   M
Sbjct: 258 IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I  ++ T++ LI D + K+G+   A  L   + +   + +I  YS +I+G C   R
Sbjct: 318 IERKINPDVFTFSALI-DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA++  + +  K   P VV+Y+ LI G CK   + E  +L  +M ++G   ++ ++ T
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +IQG     + D A    K+
Sbjct: 437 LIQGLFQAGDCDMAQEIFKE 456



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G   ++   SSL+NG C   R+ EAV L 
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G     VT+N LIH  +       A+AL+  +     + ++  Y +V++GLC+ 
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKR 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++ +  L PGV+ Y  +I+GLCK   + +A  L  +M+ KG  P+  ++
Sbjct: 235 GDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 184 NTVIQ 188
           +++I 
Sbjct: 295 SSLIS 299



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  + + YS LIN  C  ++L  A+ +  KM+  G    +VT + L++     +    A
Sbjct: 111 GMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y+ N   ++ +I GL    +  EA   +D++  KG  P +VTY +++NG
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK+G    A  LL +M++    P    + T+I G       D A +  K+
Sbjct: 231 LCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKE 281



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKY 106
           NGL    +L +AV LF +MV       ++ ++ L+     K  +F   ++L + ++    
Sbjct: 55  NGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLL-SAIAKMNKFDVVISLGEQMQNLGM 112

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N   YS++I+  CR  +   A   L ++ + G  P +VT + L+NG C    I EA  
Sbjct: 113 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+ QM   G  P++ +FNT+I G  + N+   A + + +
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDR 211



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 42/183 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK  +++ A+       +  +   ++ Y+ +I G+C   ++++  +LF
Sbjct: 465 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +  +G+  ++V YN +                                   I G CR 
Sbjct: 525 CNLSLKGVKPDVVAYNTM-----------------------------------ISGFCRK 549

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  G   D+++ 
Sbjct: 550 GSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 609

Query: 184 NTV 186
             V
Sbjct: 610 GLV 612


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 10/200 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCT 52
           FD + +QR   N   YG  I+ +CK+  +D A+ K       G+  D+FV+SSL+ GLCT
Sbjct: 365 FDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCT 424

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
            ++ ++A ELF +++ QGI  + V +N L+  N  ++GR   A  L+  + R     ++ 
Sbjct: 425 VDKWEKAEELFFEVLDQGIRLDTVFFNTLMC-NLCREGRVMEAQRLIDLMLRVGVRPDVI 483

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++DG C  GR +EA K LD +   GL P  VTYN L++G CK   I +A  L  +M
Sbjct: 484 SYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREM 543

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
             KG  PD  ++NT++ G  
Sbjct: 544 LMKGLTPDVVTYNTILHGLF 563



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C    ID A K        G+  D   Y++L++G C   R+ +A  LF +M+
Sbjct: 485 YNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREML 544

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV--- 123
            +G+T ++VTYN ++H  ++  GRFS A  L  ++   + ++NI  Y+++I+GLC+    
Sbjct: 545 MKGLTPDVVTYNTILHGLFQ-TGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFV 603

Query: 124 --------------------------------GRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                           GR E+A      +S  GLVP V TY ++
Sbjct: 604 DEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLI 663

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              L K+G + E D+L   M+E G  P+S   N +++  L + + +RA ++L K
Sbjct: 664 AENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSK 717



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 42/244 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFN 54
           +++    + + ++Y + ++ +CK       R I DS I+KGI  +V +Y  L++G  T  
Sbjct: 262 EMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEG 321

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E     D MV  G++ +   +N +     +K     AM +   + + +   NI  Y 
Sbjct: 322 SLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYG 381

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------------------- 145
            +ID LC++GR ++A  K +Q+ ++G+ P +                             
Sbjct: 382 ALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQ 441

Query: 146 ------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 V +N L+  LC++G +MEA +L+  M   G  PD  S+NT++ G  +    D A
Sbjct: 442 GIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEA 501

Query: 200 SSFL 203
           +  L
Sbjct: 502 AKLL 505



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           ++   + G+C  + +D A         + G   DVF YS L+ G C   R +EA+EL   
Sbjct: 130 IFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSM 189

Query: 66  MVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           M   G    T  +VTY  +I    + Q    A  + Q +       N   Y+ +I G   
Sbjct: 190 MADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLS 249

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G+W+E  + L ++S  GL P    Y +L++ LCK G   EA  +   +  KG  P+ T 
Sbjct: 250 IGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTI 309

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  ++ G+  +       SFL
Sbjct: 310 YGILLHGYATEGSLSEMHSFL 330



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 10/201 (4%)

Query: 15  YGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           Y I + G C  +  + A++               +V  Y+++I+GLC    +  A  +F 
Sbjct: 167 YSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQ 226

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            M+ +G+     TY  LIH           + +LQ +     + +  +Y++++D LC+ G
Sbjct: 227 HMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNG 286

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  EAR   D +  KG+ P V  Y IL++G   +G + E    L  M   G  PD   FN
Sbjct: 287 RCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFN 346

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +   +  K   D A     K
Sbjct: 347 IMFCAYAKKAMIDEAMHIFDK 367



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFSAM-ALL 98
           F Y+ LI   C   RLK     F  ++  G    + V ++ L+    + +    A   LL
Sbjct: 93  FTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILL 152

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG---LVPGVVTYNILINGL 155
           + +       ++  YS+++ G C   R EEA + L  +++ G     P VVTY  +I+GL
Sbjct: 153 RRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGL 212

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           CK  M+  A  +   M +KG  P++ ++  +I G+L
Sbjct: 213 CKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYL 248



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--- 112
           L +A++LFD+M+     A +  +N L+      +   ++  ++    R   E +I+V   
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 113 ---YSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEA-DKL 167
              Y+++I   CR+GR +        + + G  V   V ++ L+ GLC    + EA D L
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDIL 151

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           L +M E GC PD  S++ +++GF  +   + A   L 
Sbjct: 152 LRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLS 188



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
             +   R + N + Y I ING+CK   +D A K       K + LD+F  + +I  L   
Sbjct: 576 LSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKG 635

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEV 112
            R ++A++LF  + A G+  ++ TY  LI +N  K+G    +  L   +E +    N  +
Sbjct: 636 GRKEDAMDLFATISAYGLVPDVETY-CLIAENLIKEGSLEELDELFSAMEENGTAPNSRM 694

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            + ++  L   G    A   L +L EK       T ++LI+ +  +G   E  +L   + 
Sbjct: 695 LNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLIS-IYSRG---EYQQLAKSLP 750

Query: 173 EKGCFP 178
           EK  FP
Sbjct: 751 EKYHFP 756


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 7/199 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     +F  Y   I G C+ +++DSA K       KG   +   Y+ LI+GLC   R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA++LF KM        + TY  LI      + +  A+ L++ +E    + NI  Y++
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC   + E+AR+ L Q+ EKGL+P V+TYN LING CK+GMI +A  ++  M+ + 
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 176 CFPDSTSFNTVIQGFLVKN 194
             P++ ++N +I+G+  +N
Sbjct: 424 LRPNTRTYNELIKGYCKRN 442



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 43/241 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC------KIREI-DSAIKKGICLDVFVYSSLINGLC--- 51
           ++ E+  K N H Y + I+ +C      K RE+    ++KG+  +V  Y++LING C   
Sbjct: 348 EMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 52  ----------------------TFNRL---------KEAVELFDKMVAQGITAELVTYNP 80
                                 T+N L          +A+ + +KM+ + +  ++VTYN 
Sbjct: 408 MIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 81  LIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           LI D   + G F SA  LL  +       +   Y+ +ID LC+  R EEA    D L +K
Sbjct: 468 LI-DGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++P VV Y  LI+G CK G + EA  +L +M  K C P+S +FN +I G     +   A
Sbjct: 527 DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586

Query: 200 S 200
           +
Sbjct: 587 T 587



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK + +       DS  +K +  +V +Y++LI+G C   ++ EA  + +KM
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +++      +T+N LIH          A  L + + +   +  +   +++I  L + G +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A ++  Q+   G  P   TY   I   C++G + +A+ ++ +MKE G  PD  +++++
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G+     T+ A   LK+
Sbjct: 679 IKGYGDLGRTNSAFVVLKR 697



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 9/206 (4%)

Query: 2   DLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +L E R  + N   Y   I G CK R +  A       +++ +  DV  Y+SLI+G C  
Sbjct: 417 ELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
                A  L   M  +G+  +  TY  +I    + +    A  L  +LE+     N+ +Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C+ G+  EA   L+++  K  +P  +T+N LI+GLC  G + EA  L  +M +
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVK 595

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
               P  ++   +I   L   + D A
Sbjct: 596 IDLQPTVSTDTILIHRLLKDGDFDHA 621



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  EQ+    N  +Y   I+G CK  +++ A       + K    +   +++LI+GLCT
Sbjct: 520 FDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCT 579

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +LKEA  L +KMV   +   + T   LIH    K G F  A    Q +     + +  
Sbjct: 580 DGKLKEATLLEEKMVKIDLQPTVSTDTILIH-RLLKDGDFDHAYRRFQQMLSSGTKPDAH 638

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+  I   CR GR ++A   + ++ E G+ P + TY+ LI G    G    A  +L +M
Sbjct: 639 TYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRM 698

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            + GC P   +F ++I+  L
Sbjct: 699 HDTGCEPSQHTFLSLIKHLL 718



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 42/228 (18%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E ++K     Y   +N + +   +D         ++  +C +++ Y+ ++NG C    ++
Sbjct: 176 ELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVE 235

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------------------------ 93
           EA +    +V  G+  +  TY  LI    +++   S                        
Sbjct: 236 EANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLI 295

Query: 94  -----------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                      AM L   ++ D     +  Y+++I  LC   R  EA   + ++ EKG+ 
Sbjct: 296 HGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIK 355

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P + TY +LI+ LC +  + +A +LL QM EKG  P+  ++N +I G+
Sbjct: 356 PNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGY 403



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 10/189 (5%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           +C+    D + +    L +  Y++L+N L  F  + E  +++ +M+   +   + TYN +
Sbjct: 165 LCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224

Query: 82  IHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           ++      N E+  ++ +M +   L+ D +      Y+ +I G C+    + A K   ++
Sbjct: 225 VNGYCKVGNVEEANQYVSMIVEAGLDPDFF-----TYTSLIMGYCQRKDLDSAFKVFKEM 279

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             KG     V Y  LI+GLC +  I EA  L V+MK+  C+P   ++  +I+        
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERK 339

Query: 197 DRASSFLKK 205
             A + +K+
Sbjct: 340 SEALNLVKE 348



 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA-QGITAELVTYNPLIHDNW 86
           ++  ++ G+  +   Y  L+ G+C    L+ A ++FD M   +GI+   + +N L+    
Sbjct: 748 LEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCC 807

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + +    A  ++  +    +   +E   ++I  L + G  E        L + G     +
Sbjct: 808 KLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDEL 867

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + I+I+G+ K+G++    +L   M++ GC   S +++ +I+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 39/160 (24%)

Query: 49  GLCTFNRLKE---AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           G+C  + + E    VEL +KMV  G+T                                 
Sbjct: 731 GVCVMSNMMEFDIVVELLEKMVEHGVTP-------------------------------- 758

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEA 164
              N + Y  ++ G+C +G    A K  D + +K G+ P  + +N L++  CK     EA
Sbjct: 759 ---NAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEA 815

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            K++  M   G  P   S   +I     K E +R +S  +
Sbjct: 816 AKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQ 855



 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
           + E     N   Y   + G+C+I  +  A         K+GI     V+++L++  C   
Sbjct: 751 MVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLE 810

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  EA ++ D M+  G   +L +   LI   ++K  +    ++ Q L +  Y  +   + 
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWK 870

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++IDG+ + G  E   +  + + + G      TY++LI G
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 114/204 (55%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+G   + E+  A        ++G+  DV  Y+++INGLC    + EA+ 
Sbjct: 299 KPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMS 358

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF++M  + +  ++VTYN LI    +      A+AL + ++    + ++  Y++++DGLC
Sbjct: 359 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLC 418

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR E+A++   +L  KG    V  Y +LIN LCK G   EA  L  +M++KGC PD+ 
Sbjct: 419 KSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAV 478

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +F+ +I+    K+E D+A   L++
Sbjct: 479 TFDIIIRALFEKDENDKAEKILRE 502



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L     K +  +Y   IN +CK + +  A       I KGI  DV  Y++LI+G C    
Sbjct: 188 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGH 247

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           LKEA  L ++M  + I   + T+N LI D   K+G+   A  LL  + +   + ++  Y+
Sbjct: 248 LKEAFSLLNEMKLKNINPNVCTFNILI-DALSKEGKMKEAKILLAVMMKACIKPDVFTYN 306

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG   V   + A+     ++++G+ P V  Y  +INGLCK  M+ EA  L  +MK K
Sbjct: 307 SLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHK 366

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++N++I G    +  +RA +  K+
Sbjct: 367 NMIPDIVTYNSLIDGLCKNHHLERAIALCKR 397



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 9/183 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           + + ++    +   Y   ING+CK + +D A+        K +  D+  Y+SLI+GLC  
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN 385

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
           + L+ A+ L  +M  QGI  ++ +Y  L+ D   K GR   A  + Q L    Y LN+  
Sbjct: 386 HHLERAIALCKRMKEQGIQPDVYSYTILL-DGLCKSGRLEDAKEIFQRLLAKGYHLNVHA 444

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++I+ LC+ G ++EA     ++ +KG +P  VT++I+I  L +K    +A+K+L +M 
Sbjct: 445 YTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMI 504

Query: 173 EKG 175
            +G
Sbjct: 505 ARG 507



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRIN----GMCKIREI-------DSAIKKGICLDVFVYSSLING 49
           F +     K  FH   I +N    G+C   EI       D  + +G  LD   Y +LING
Sbjct: 112 FSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLING 171

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC     K    L  K+    +  ++V YN +I+   + +    A  +   +       +
Sbjct: 172 LCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 231

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I G C +G  +EA   L+++  K + P V T+NILI+ L K+G + EA  LL 
Sbjct: 232 VVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLA 291

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            M +    PD  ++N++I G+ + +E   A
Sbjct: 292 VMMKACIKPDVFTYNSLIDGYFLVDEVKHA 321



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            I IN  C    I  A       +K+G   +    ++LI GLC    +K+A+   D++VA
Sbjct: 96  SILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVA 155

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           QG   + V+Y  LI +   K G   A+A LL+ LE    + ++ +Y+ +I+ LC+     
Sbjct: 156 QGFQLDQVSYGTLI-NGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLG 214

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A     ++  KG+ P VVTY  LI+G C  G + EA  LL +MK K   P+  +FN +I
Sbjct: 215 DACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILI 274

Query: 188 QGF 190
              
Sbjct: 275 DAL 277



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D+   S LIN  C    +  A  +F  ++ +G     +T N LI     +     A
Sbjct: 87  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKA 146

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     L    ++L+   Y  +I+GLC+ G  +   + L +L    + P VV YN +IN 
Sbjct: 147 LYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINS 206

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LCK  ++ +A  +  +M  KG  PD  ++ T+I GF +      A S L
Sbjct: 207 LCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLL 255



 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 39/87 (44%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  L     +        Q    G+ P + T +ILIN  C +  I  A  +   + ++G
Sbjct: 63  ILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRG 122

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             P++ + NT+I+G   + E  +A  F
Sbjct: 123 FHPNAITLNTLIKGLCFRGEIKKALYF 149


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 112/193 (58%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK++E+D A       + KG+  DVF ++SLI G C   +   A ELF  M   G 
Sbjct: 366 IHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQ 425

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              L T   ++    +      A+ L + + +   +L+I +Y++++DG+C++G+  +ARK
Sbjct: 426 VPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARK 485

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L  +  KGL     TYNI+I GLC++G++ +A++LL +MKE GC P+  S+N  +QG L
Sbjct: 486 LLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLL 545

Query: 192 VKNETDRASSFLK 204
            K +  R+  +L+
Sbjct: 546 RKYDIARSRKYLQ 558



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 21/214 (9%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  N   YG  +NG+CKI +   A       +K+ +  +V VY+++++GLC    + EA+
Sbjct: 176 YHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEAL 235

Query: 61  ELFDKMVAQGITAELVTYNPLIHD------NW-EKQGRFSAMALLQTLERDKYELNIEVY 113
            L  +M    +   +VTYN LI         W E  G F+ M   + +  D     ++ +
Sbjct: 236 GLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPD-----VQTF 290

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL--LVQM 171
           S+++DG C+ G    A   +  +   G+ P VVTYN LI G C +  + EA ++  L+  
Sbjct: 291 SILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVR 350

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +GC P   + N++I G+    E D+A S L +
Sbjct: 351 EGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSE 384



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 104/191 (54%), Gaps = 11/191 (5%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+C   +++ A+         G   +   Y +L+NGLC       A+E   KMV + +
Sbjct: 152 VNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNL 211

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC-RVGRWEEA 129
              +V YN ++ D   K+G    A+ LL  +     E N+  Y+ +I GLC   G W E 
Sbjct: 212 GPNVVVYNAIL-DGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREG 270

Query: 130 RKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
               +++ +EKG+VP V T++IL++G CK+G+++ A+ ++  M   G  P+  ++N++I 
Sbjct: 271 VGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIA 330

Query: 189 GFLVKNETDRA 199
           G+ ++++ + A
Sbjct: 331 GYCLRSQMEEA 341



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV   +  IN LC   +      +   M   G+   LVT N +++    +     A+ L+
Sbjct: 109 DVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLV 168

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +E   Y  N   Y  +++GLC++G    A + L ++ ++ L P VV YN +++GLCK+
Sbjct: 169 EKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKR 228

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G++ EA  LL +M      P+  ++N +IQG 
Sbjct: 229 GLVGEALGLLHEMGVVNVEPNVVTYNCLIQGL 260



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 9/194 (4%)

Query: 17  IRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN +C +R+       +    K G+   +   ++++NGLC    +  A+ L +KM   
Sbjct: 115 IAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENL 174

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G      TY  L++   +      A+  L+ + +     N+ VY+ ++DGLC+ G   EA
Sbjct: 175 GYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEA 234

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQM-KEKGCFPDSTSFNTVI 187
              L ++    + P VVTYN LI GLC + G   E   L  +M  EKG  PD  +F+ ++
Sbjct: 235 LGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILV 294

Query: 188 QGFLVKNETDRASS 201
            GF  +    RA S
Sbjct: 295 DGFCKEGLLLRAES 308



 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYSLVI 117
           AV+ F +M+       +  +N L     + Q   +A++L++ L        ++   ++ I
Sbjct: 58  AVDFFHRMLTLTPFPCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAI 117

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           + LC + +       L  +++ GL P +VT N ++NGLC +G +  A  L+ +M+  G  
Sbjct: 118 NCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYH 177

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++ ++  ++ G     +T  A   LKK
Sbjct: 178 CNARTYGALVNGLCKIGDTSGALECLKK 205



 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 58/134 (43%)

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +A++ T N  I+     +      A+L  + +   E  +   + +++GLC  G    A  
Sbjct: 107 SADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALW 166

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            ++++   G      TY  L+NGLCK G    A + L +M ++   P+   +N ++ G  
Sbjct: 167 LVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLC 226

Query: 192 VKNETDRASSFLKK 205
            +     A   L +
Sbjct: 227 KRGLVGEALGLLHE 240


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 117/208 (56%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E   + + + Y   I G+C        +  +D  +++    DV  Y+ L+   C  + 
Sbjct: 23  VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSG 82

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            K+A++L D+M  +G T ++VTYN +++   ++     A+  L+ L     E N   Y++
Sbjct: 83  YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 142

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GLC   RWE+A + + ++ +KG  P VVT+N+LI+ LC+KG++  A ++L Q+ + G
Sbjct: 143 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 202

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C P+S S+N ++  F  + + D+A +FL
Sbjct: 203 CTPNSLSYNPLLHAFCKQKKMDKAMAFL 230



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C   ++D+A     +  +  D + Y++LI GLC   R   A+ + D+M+ +
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRR 61

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               ++VTY  L+    ++ G   AM LL  +       +I  Y++V++G+C+ GR ++A
Sbjct: 62  RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDA 121

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  L   G  P  V+YNI++ GLC      +A++L+ +M +KGC P+  +FN +I  
Sbjct: 122 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF 181

Query: 190 FLVKNETDRASSFLKK 205
              K   + A   L++
Sbjct: 182 LCRKGLVEPALEVLEQ 197



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D AI+        G   +   Y+ ++ GLCT
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 149

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A EL  +M  +G    +VT+N LI     K     A+ +L+ + +     N   
Sbjct: 150 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 209

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + ++A   LD +  +G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 210 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 269

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T  A   L +
Sbjct: 270 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 302



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+C     + A        +KG   +V  ++ LI+ LC    ++ A+E+ 
Sbjct: 136 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 195

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++   G T   ++YNPL+H   +++    AMA L  +       +I  Y+ ++  LCR 
Sbjct: 196 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 255

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  KG  PD  ++
Sbjct: 256 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 315

Query: 184 NTVIQGFLVKNETDRA 199
           +T+  G   ++  + A
Sbjct: 316 STIAAGLCREDRIEDA 331



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       + +G   D+  Y++L+  LC    +  AVEL 
Sbjct: 206 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 265

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G    L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 266 HQLKDKGCAPVLISYNTVI-DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 324

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R E+A +   ++ + G+ P  V YN +I GLCK+     A  L   M   GC P+ ++
Sbjct: 325 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 384

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I+G   +     A   L +
Sbjct: 385 YTILIEGLAYEGLIKEARDLLDE 407



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   + + I+ +C+   ++ A+       K G   +   Y+ L++  C   
Sbjct: 162 EMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQK 221

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A+   D MV++G   ++V+YN L+           A+ LL  L+       +  Y+
Sbjct: 222 KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 281

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGL + G+ +EA + L+++  KGL P ++TY+ +  GLC++  I +A +   ++++ 
Sbjct: 282 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 341

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P++  +N +I G   + ET  A
Sbjct: 342 GIRPNTVLYNAIILGLCKRRETHSA 366



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C+  E+D A++       KG    +  Y+++I+GL    + KEA+EL ++MV
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +++TY+ +      +     A+     ++      N  +Y+ +I GLC+     
Sbjct: 305 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            A      +   G +P   TY ILI GL  +G+I EA  LL ++
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + KG+  D+  YS++  GLC  +R+++A+  F K+   GI    V YN +I    +
Sbjct: 300 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 359

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           ++   SA+ L   +  +    N   Y+++I+GL   G  +EAR  LD+L  + 
Sbjct: 360 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 117/208 (56%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E   + + + Y   I G+C        +  +D  +++    DV  Y+ L+   C  + 
Sbjct: 149 VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSG 208

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            K+A++L D+M  +G T ++VTYN +++   ++     A+  L+ L     E N   Y++
Sbjct: 209 YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 268

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GLC   RWE+A + + ++ +KG  P VVT+N+LI+ LC+KG++  A ++L Q+ + G
Sbjct: 269 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 328

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C P+S S+N ++  F  + + D+A +FL
Sbjct: 329 CTPNSLSYNPLLHAFCKQKKMDKAMAFL 356



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +   Y   + G C   ++D+A     +  +  D + Y++LI GLC   R   A+ + D+M
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEM 184

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +    ++VTY  L+    ++ G   AM LL  +       +I  Y++V++G+C+ GR 
Sbjct: 185 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 244

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + L  L   G  P  V+YNI++ GLC      +A++L+ +M +KGC P+  +FN +
Sbjct: 245 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 304

Query: 187 IQGFLVKNETDRASSFLKK 205
           I     K   + A   L++
Sbjct: 305 ISFLCRKGLVEPALEVLEQ 323



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D AI+        G   +   Y+ ++ GLCT
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A EL  +M  +G    +VT+N LI     K     A+ +L+ + +     N   
Sbjct: 276 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 335

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + ++A   LD +  +G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 336 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 395

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T  A   L +
Sbjct: 396 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 428



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+C     + A        +KG   +V  ++ LI+ LC    ++ A+E+ 
Sbjct: 262 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 321

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++   G T   ++YNPL+H   +++    AMA L  +       +I  Y+ ++  LCR 
Sbjct: 322 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 381

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  KG  PD  ++
Sbjct: 382 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 441

Query: 184 NTVIQGFLVKNETDRA 199
           +T+  G   ++  + A
Sbjct: 442 STIAAGLCREDRIEDA 457



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       + +G   D+  Y++L+  LC    +  AVEL 
Sbjct: 332 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G    L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 392 HQLKDKGCAPVLISYNTVI-DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 450

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R E+A +   ++ + G+ P  V YN +I GLCK+     A  L   M   GC P+ ++
Sbjct: 451 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 510

Query: 183 FNTVIQGF----LVKNETD 197
           +  +I+G     L+K   D
Sbjct: 511 YTILIEGLAYEGLIKEARD 529



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I+ +C+   ++ A+       K G   +   Y+ L++  C   ++ +A+   
Sbjct: 297 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 356

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV++G   ++V+YN L+           A+ LL  L+       +  Y+ VIDGL + 
Sbjct: 357 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 416

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + L+++  KGL P ++TY+ +  GLC++  I +A +   ++++ G  P++  +
Sbjct: 417 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 476

Query: 184 NTVIQGFLVKNETDRA 199
           N +I G   + ET  A
Sbjct: 477 NAIILGLCKRRETHSA 492



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C+  E+D A++       KG    +  Y+++I+GL    + KEA+EL ++MV
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +++TY+ +      +     A+     ++      N  +Y+ +I GLC+     
Sbjct: 431 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 490

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            A      +   G +P   TY ILI GL  +G+I EA  LL ++  +G
Sbjct: 491 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + KG+  D+  YS++  GLC  +R+++A+  F K+   GI    V YN +I    +
Sbjct: 426 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 485

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           ++   SA+ L   +  +    N   Y+++I+GL   G  +EAR  LD+L  +G+V
Sbjct: 486 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I  L   GR  EAR+ L         P V+ YN ++ G C  G +  A +L+ +M  
Sbjct: 100 AALIKKLSASGRTAEARRVLAACG-----PDVMAYNAMVAGYCGAGQLDAARRLVAEMPV 154

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +   PD+ ++NT+I+G   +  T  A + L
Sbjct: 155 E---PDAYTYNTLIRGLCGRGRTANALAVL 181


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N  +Y   +NG CKI+ +D AI        + I  +V  YSSLI+GLC   R+  A++L
Sbjct: 339 ANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            D+M  +G    +VTY+ ++    +      A+ALL  L+      ++  Y+++I GLC+
Sbjct: 399 VDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQ 458

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR E+A+   + L  KG    V  Y ++I G C KG   +A  LL +M++ GC P++ +
Sbjct: 459 SGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKT 518

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  VI     K+E D A   L++
Sbjct: 519 YELVILSLFEKDENDTAEKLLRE 541



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C I ++       DS    G+  +V +Y++++NG C    + EA+ LF++M 
Sbjct: 309 YNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMR 368

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + I   +VTY+ LI D   K GR F A+ L+  +       NI  YS ++D LC+    
Sbjct: 369 CRKIIPNVVTYSSLI-DGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHV 427

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L  L ++G+ P + TY ILI GLC+ G + +A  +   +  KG   D  ++  +
Sbjct: 428 DKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVM 487

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQGF  K   D+A + L K
Sbjct: 488 IQGFCDKGFFDKALALLSK 506



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 105/185 (56%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+ MCK + ++ A       + K IC DVF Y++LI+G    ++L  A++LF+KM
Sbjct: 203 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKM 262

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             + I   + T+N L+ D + K+G+ + A  +L  + +D  + ++  Y+ ++DG C + +
Sbjct: 263 KKENINPNVYTFNILV-DGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINK 321

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A+   D ++  G++  V  Y  ++NG CK  M+ EA  L  +M+ +   P+  ++++
Sbjct: 322 VNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 186 VIQGF 190
           +I G 
Sbjct: 382 LIDGL 386



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 11/199 (5%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  ING+CK+  I +A++       K +  +  +Y+ +I+ +C    + +A 
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 221

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L+ +MVA+ I  ++ TYN LI           A+ L   ++++    N+  +++++DG 
Sbjct: 222 DLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGF 281

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  +A+  L  + +  + P VVTYN L++G C    + +A  +   M   G   + 
Sbjct: 282 CKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANV 341

Query: 181 TSFNTVIQGFLVKNETDRA 199
             + T++ GF      D A
Sbjct: 342 QIYTTMVNGFCKIKMVDEA 360



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 11/210 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRIN----GMCKIREI-------DSAIKKGICLDVFVYSSLING 49
           F +  +  K  +H   I  N    G+C    I       D  + +G  LD   Y +LING
Sbjct: 116 FSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLING 175

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   R+  A++L  ++  + +    V YN +I +  + +    A  L   +   +   +
Sbjct: 176 LCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I G   V +   A    +++ ++ + P V T+NIL++G CK+G + +A  +L 
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLA 295

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            M +    PD  ++N+++ G+   N+ ++A
Sbjct: 296 IMMKDDIKPDVVTYNSLMDGYCSINKVNKA 325



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 2/173 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG       +++LI GLC    + +A+   DK+VAQG   + V+Y  LI +   K GR
Sbjct: 123 LKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLI-NGLCKVGR 181

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + A+ LL+ ++    + N  +Y+++ID +C+     +A     Q+  K + P V TYN 
Sbjct: 182 ITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNA 241

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LI+G      +  A  L  +MK++   P+  +FN ++ GF  + + + A   L
Sbjct: 242 LISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVL 294



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D F ++ LIN          +  +F K++ +G     +T+N LI     K     A
Sbjct: 91  GIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQA 150

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     +    + L+   Y  +I+GLC+VGR   A + L ++  K + P  V YN++I+ 
Sbjct: 151 LHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDN 210

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +CK  ++ +A  L  QM  K   PD  ++N +I GF   ++ + A     K
Sbjct: 211 MCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNK 261



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 7/139 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++ +CK   +D AI        +GI  D++ Y+ LI GLC   RL++A  +F
Sbjct: 410 NIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVF 469

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + ++ +G   ++  Y  +I    +K     A+ALL  +E +    N + Y LVI  L   
Sbjct: 470 EDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEK 529

Query: 124 GRWEEARKKLDQLSEKGLV 142
              + A K L ++  +GL+
Sbjct: 530 DENDTAEKLLREMIVRGLL 548



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 44/93 (47%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L +      A     Q+   G+     T+NILIN   + G+   +  +  ++ 
Sbjct: 64  FNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKIL 123

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KG  P + +FNT+I+G  +K    +A  F  K
Sbjct: 124 KKGYHPTAITFNTLIKGLCLKGHIHQALHFHDK 156


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 115/200 (57%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C+I+ ++ A       +  G+  ++  +++LI G C   +   A ELF
Sbjct: 357 NIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELF 416

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G   +L T   ++   ++      AM+L + LE+   +L+I +YS++++G+C  
Sbjct: 417 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSS 476

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A +    LS KG+   VVTYNI+INGLCK+G++ +A+ LL++M+E GC PD  ++
Sbjct: 477 GKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY 536

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N  +QG L + E  +++ +L
Sbjct: 537 NVFVQGLLRRYEISKSTKYL 556



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + I IN +C++         +    K G+   +  +++++NGLC    + +A+ 
Sbjct: 110 KPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 169

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             D +   G  ++  T   +I+   +     +A++ L+ +E     L++  Y+ V+DGLC
Sbjct: 170 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLC 229

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G   EA     Q++ KG+ P + TYN LI+GLC      EA  LL  M  KG  PD  
Sbjct: 230 KDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQ 289

Query: 182 SFNTVIQGFLVKNETDRASS 201
           +FN +   FL      RA S
Sbjct: 290 TFNVIGGRFLKTGMISRAKS 309



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 42/230 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L +  ++ + +  G  ING+CK+    +A+       ++   LDV  Y+++++GLC    
Sbjct: 174 LKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGM 233

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQ--------------------- 89
           + EA +LF +M  +GI  +L TYN LIH     D W++                      
Sbjct: 234 VFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNV 293

Query: 90  --GRF-------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
             GRF        A ++   +     E ++  YS +I   C + + ++A +  D +  KG
Sbjct: 294 IGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKG 353

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +P +VTY  LI+G C+   + +A   L +M   G  P+  ++NT+I GF
Sbjct: 354 CLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGF 403



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + EQ    +   Y   ++G+CK   +  A         KGI  D+F Y+ LI+GLC F+R
Sbjct: 209 MEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDR 268

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---------------------- 93
            KEA  L   M+ +GI  ++ T+N +I   + K G  S                      
Sbjct: 269 WKEAAPLLANMMRKGIMPDVQTFN-VIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYS 327

Query: 94  --------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                         AM +   + R     NI  Y+ +I G C +    +A   L ++   
Sbjct: 328 SIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNN 387

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P +VT+N LI G CK G  + A +L   M + G  PD  +   ++ G    +    A
Sbjct: 388 GLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEA 447

Query: 200 SSFLKK 205
            S  ++
Sbjct: 448 MSLFRE 453



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +V  ++ +IN LC  N       +   M   G+   +VT+  +++    +     A
Sbjct: 108 GVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQA 167

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +  +  L+   YE +      +I+GLC+VG    A   L ++ E+     V  YN +++G
Sbjct: 168 IRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDG 227

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LCK GM+ EA  L  QM  KG  PD  ++N +I G    +    A+  L   M
Sbjct: 228 LCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMM 280



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 43/198 (21%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           FK +FH        M   RE++   K    LD+ +YS ++NG+C+  +L +A+ELF  + 
Sbjct: 439 FKCHFHS-----EAMSLFRELE---KMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLS 490

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  ++VT                                   Y+++I+GLC+ G  +
Sbjct: 491 SKGVKIDVVT-----------------------------------YNIMINGLCKEGLLD 515

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   L ++ E G  P   TYN+ + GL ++  I ++ K L+ MK KG   ++T+   +I
Sbjct: 516 DAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLI 575

Query: 188 QGFLVKNETDRASSFLKK 205
             F    E      FL+K
Sbjct: 576 NYFSANKENRAFQVFLQK 593



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 73/147 (49%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A++ + KMV       +  +N L     + +   +A++L++ +     + N+  +++VI+
Sbjct: 62  ALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVIN 121

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LCR+         L  + + G+ P +VT+  ++NGLC +G + +A + +  +K+ G   
Sbjct: 122 CLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYES 181

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  +   +I G      +  A S+LKK
Sbjct: 182 DRYTRGAIINGLCKVGHSSAALSYLKK 208


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           + R   N   Y + I+G+CK   +  A++       +G   DV  Y+ L++GLC  +++ 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A E+  +M+  G    LVTYN L+H     +    A+AL++ +       N+  Y  +I
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+VGR ++A   L  + +KG  P ++ YN+LINGLCK   + E+  LL +    G  
Sbjct: 304 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIK 363

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
           PD  ++++VI G    N  D A   L
Sbjct: 364 PDVVTYSSVIYGLCRSNRLDEACRLL 389



 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDS-------AIKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    +  +Y + ING+CK  ++D        A+  GI  DV  YSS+I GLC  N
Sbjct: 321 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSN 380

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL EA  L   + ++G   +++ Y+ LI D   K G+   A  L + +  D  + ++  Y
Sbjct: 381 RLDEACRLLLYVKSRGCPPDVILYSTLI-DGLCKAGKVDEAFDLYEVMAGDGCDADVVTY 439

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGLC+ GR +EA   L ++   G  P  +TYN LI GLC    + EA +L+ +M+ 
Sbjct: 440 STLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 499

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P + ++N +I G       D A   L++
Sbjct: 500 SNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ 531



 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+T +    N   YG  I+G+CK+  +  A       I KG   D+ +Y+ LINGLC  +
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 345

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ E++ L  + V+ GI  ++VTY+ +I+          A  LL  ++      ++ +YS
Sbjct: 346 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 405

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ G+ +EA    + ++  G    VVTY+ LI+GLCK G + EA  LL +M   
Sbjct: 406 TLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 465

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + ++N++I+G    N  D A   +++
Sbjct: 466 GTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 496



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+C+ R +  A+        +G   +V  Y +LI+GLC   R+K+A  + 
Sbjct: 260 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 319

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+ +G T +L+ YN LI+   +      ++ALL+       + ++  YS VI GLCR 
Sbjct: 320 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 379

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R +EA + L  +  +G  P V+ Y+ LI+GLCK G + EA  L   M   GC  D  ++
Sbjct: 380 NRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTY 439

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G       D A   L +
Sbjct: 440 STLIDGLCKAGRVDEAHLLLAR 461



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 12/189 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK  ++D A          G   DV  YS+LI+GLC   R+ EA  L  +M
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G     +TYN LI    +      A+ L++ +ER     +   Y+++I G+CR+ R 
Sbjct: 463 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERV 522

Query: 127 EEARKKLDQLSEKGLVPG-----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + A   L+Q   + +  G      + Y+ LI+GLCK G + EA     +M + G  PD  
Sbjct: 523 DSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHI 582

Query: 182 SFNTVIQGF 190
           +++ +++G 
Sbjct: 583 TYSILLEGL 591



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 9/193 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   I G+C+   +D A +       +G   DV +YS+LI+GLC   ++ EA 
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L++ M   G  A++VTY+ LI D   K GR   A  LL  + R     +   Y+ +I G
Sbjct: 422 DLYEVMAGDGCDADVVTYSTLI-DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC +   +EA + ++++      P  VTYNILI+G+C+   +  A  LL Q K +     
Sbjct: 481 LCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAG 540

Query: 180 STSFNTVIQGFLV 192
            T+ +T+    L+
Sbjct: 541 GTALDTIAYSSLI 553



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 49/246 (19%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + Y   + G C+  EID A +       K +  +VF+ S LI+GLC   R  +A+ 
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            F  M   GI A+ V Y  L+   W+++    A+A+L  +     E N+  Y+ +IDGLC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 122 -----------------------------------RVGRWEEA----RKKLDQLS---EK 139
                                              R G+ E A    ++ LD+ S   + 
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDD 185

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P V+TY++LI+GLCK   + +A +LL  MK +GC PD  ++  ++ G   +++   A
Sbjct: 186 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAA 245

Query: 200 SSFLKK 205
              L++
Sbjct: 246 WEVLRE 251



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   +D A       ++ G       Y+SLI GLC  N L EA+EL ++M 
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 498

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-----TLERDKYELNIEVYSLVIDGLCR 122
                   VTYN LIH     +   SA+ LL+      +      L+   YS +IDGLC+
Sbjct: 499 RSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCK 558

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV-QMKEKG 175
            GR  EA     ++ + G++P  +TY+IL+ GL K   + E   L++ QM + G
Sbjct: 559 AGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F   + R   N   Y + I+G+CK   +  A++       +G   DV  Y+ L++GLC  
Sbjct: 102 FRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 161

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           +++  A E+  +M+  G    LVTYN L+H     +    A+AL++ +       N+  Y
Sbjct: 162 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 221

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +IDGLC+VGR ++A   L  + +KG  P ++ YN+LINGLCK   + E+  LL +   
Sbjct: 222 GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVS 281

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G  PD  ++++VI G    N  D A   L
Sbjct: 282 GGIKPDVVTYSSVIYGLCRSNRLDEACRLL 311



 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDS-------AIKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    +  +Y + ING+CK  ++D        A+  GI  DV  YSS+I GLC  N
Sbjct: 243 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSN 302

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL EA  L   + ++G   +++ Y+ LI D   K G+   A  L + +  D  + ++  Y
Sbjct: 303 RLDEACRLLLYVKSRGCPPDVILYSTLI-DGLCKAGKVDEAFDLYEVMTGDGCDADVVTY 361

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGLC+ GR +EA   L ++   G  P  +TYN LI GLC    + EA +L+ +M+ 
Sbjct: 362 STLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 421

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRAS 200
             C P + ++N +I G       D A+
Sbjct: 422 SNCAPSAVTYNILIHGMCRMERVDSAA 448



 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+T +    N   YG  I+G+CK+  +  A       I KG   D+ +Y+ LINGLC  +
Sbjct: 208 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 267

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ E++ L  + V+ GI  ++VTY+ +I+          A  LL  ++      ++ +YS
Sbjct: 268 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 327

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ G+ +EA    + ++  G    VVTY+ LI+GLCK G + EA  LL +M   
Sbjct: 328 TLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 387

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + ++N++I+G    N  D A   +++
Sbjct: 388 GTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 418



 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+C+ R +  A+        +G   +V  Y +LI+GLC   R+K+A  + 
Sbjct: 182 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+ +G T +L+ YN LI+   +      ++ALL+       + ++  YS VI GLCR 
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 301

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R +EA + L  +  +G  P V+ Y+ LI+GLCK G + EA  L   M   GC  D  ++
Sbjct: 302 NRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTY 361

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G       D A   L +
Sbjct: 362 STLIDGLCKAGRVDEAHLLLAR 383



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 4/168 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           +V  Y+SLI+GLC  N    A ELF+ M +   +  +VTYN L+ D   + G+   AMAL
Sbjct: 9   NVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLL-DGLFRTGKLERAMAL 67

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            Q +  D+   ++  +++++ GLCR G+ E A +   ++ ++   P V+TY++LI+GLCK
Sbjct: 68  FQEM-LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCK 125

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              + +A +LL  MK +GC PD  ++  ++ G   +++   A   L++
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 173



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK  ++D A          G   DV  YS+LI+GLC   R+ EA  L  +M
Sbjct: 325 LYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 384

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G     +TYN LI    +      A+ L++ +ER     +   Y+++I G+CR+ R 
Sbjct: 385 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERV 444

Query: 127 EEAR-KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV-QMKEKG 175
           + A      ++ + G++P  +TY+IL+ GL K   + E   L++ QM + G
Sbjct: 445 DSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 495



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E N+  Y+ +IDGLC+    + A++  + +      P +VTYN L++GL + G +  A  
Sbjct: 7   EPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMA 66

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L  +M ++    D  SFN ++ G     + + A  F +K
Sbjct: 67  LFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRK 104



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + + G  P VVTYN LI+GLCK      A +L   MK   C P   ++NT++ G     +
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 196 TDRASSFLKK 205
            +RA +  ++
Sbjct: 61  LERAMALFQE 70


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMC---------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           +Y + ++G C         KIR  D  +++G  LDV  Y++++NGLC    L +A +LFD
Sbjct: 143 IYTVLMHGYCRNGNMLEALKIR--DEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 200

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +MV +G   +  T+  LIH + +      A++L  T+ +   + +I  Y+ +IDG C+VG
Sbjct: 201 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 260

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E+A +  D +  + + P  +TY ILIN  C  G + EA +L   M EKG  P   + N
Sbjct: 261 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 320

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           TVI+G+    ++ +A  FL +
Sbjct: 321 TVIKGYCRSGDSSKADEFLGR 341



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K +   Y   ING+CK      A       +  G+  D   Y++L+   C  + 
Sbjct: 27  MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 86

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E+F +M+ QG+  +LV+++ L+      +    A+   + +++     +  +Y++
Sbjct: 87  FSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G CR G   EA K  D++ E+G V  V+ YN ++NGLCK+ M+ +ADKL  +M E+G
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 206

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  +F T+I G        +A S  
Sbjct: 207 ALPDFYTFTTLIHGHCQDGNMTKALSLF 234



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I   CR G  EEA + ++ +++KGL P + TYN +INGLCKKG    A  +L++M
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 172 KEKGCFPDSTSFNTVI 187
              G  PD+T++NT++
Sbjct: 63  LNIGLSPDTTTYNTLL 78



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 37/185 (20%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQT 100
            Y++LI   C    L+EA E+ + M  +G+   L TYN +I +   K+GR++ A  +L  
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAII-NGLCKKGRYARAKGILIE 61

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEAR----------------------------KK 132
           +       +   Y+ ++   CR   + EA+                            + 
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRH 121

Query: 133 LDQ-------LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           LDQ       + + GLVP  V Y +L++G C+ G ++EA K+  +M E+GC  D  ++NT
Sbjct: 122 LDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 181

Query: 186 VIQGF 190
           ++ G 
Sbjct: 182 ILNGL 186



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +F+ +   I+G C+   +  A+       ++ I  D+  Y++LI+G C   
Sbjct: 201 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 260

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A EL+D M+++ I    +TY  LI+          A  L   +     +  +   +
Sbjct: 261 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 320

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            VI G CR G   +A + L ++  KG+ P  ++YN LIN
Sbjct: 321 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YGI IN  C +  +  A       I+KGI   +   +++I G C      +A E  
Sbjct: 280 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 339

Query: 64  DKMVAQGITAELVTYNPLIHD 84
            +M+A+G+  + ++YN LI+D
Sbjct: 340 GRMIAKGVAPDHISYNTLIND 360


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMC---------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           +Y + ++G C         KIR  D  +++G  LDV  Y++++NGLC    L +A +LFD
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIR--DEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +MV +G   +  T+  LIH + +      A++L  T+ +   + +I  Y+ +IDG C+VG
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E+A +  D +  + + P  +TY ILIN  C  G + EA +L   M EKG  P   + N
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 472

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           TVI+G+    ++ +A  FL +
Sbjct: 473 TVIKGYCRSGDSSKADEFLGR 493



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K +   Y   ING+CK      A       +  G+  D   Y++L+   C  + 
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 238

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E+F +M+ QG+  +LV+++ LI      +    A+   + +++     +  +Y++
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G CR G   EA K  D++ E+G V  V+ YN ++NGLCK+ M+ +ADKL  +M E+G
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  +F T+I G        +A S  
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLF 386



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 7/207 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T++  K +   Y   I+G CK+ E++ A       I + I  +   Y  LIN  C+   
Sbjct: 389 MTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGH 448

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  L+D M+ +GI   LVT N +I           A   L  +       +   Y+ 
Sbjct: 449 VSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 508

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G  R    ++A   ++++ ++GL+P ++TYN+++NG C++G + EA+ +L +M EKG
Sbjct: 509 LINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG 568

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             PD +++  +I G + ++  + A  F
Sbjct: 569 INPDRSTYTALINGHVTQDNLNEAFRF 595



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YGI IN  C +  +  A       I+KGI   +   +++I G C      +A E  
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+A+G+  + ++YN LI+    +     A   +  +E++    +I  Y++V++G CR 
Sbjct: 492 GRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQ 551

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           GR +EA   L ++ EKG+ P   TY  LING   +  + EA +   +M ++G  PD
Sbjct: 552 GRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A +    KG  + +   +SL+ GL   + ++ A E+  ++V  GI   + T N
Sbjct: 63  KLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLN 122

Query: 80  PLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            ++ +   K G+F  + + L  +E +    ++  Y+ +I   CR G  EEA + ++ +++
Sbjct: 123 IMV-NALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMAD 181

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           KGL P + TYN +INGLCKKG    A  +L++M   G  PD+T++NT++
Sbjct: 182 KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLL 230



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           + G+ KI  ++ A       ++ GI L+V+  + ++N LC   +  +      +M   GI
Sbjct: 90  LGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGI 149

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            A++VTYN LI     +     A  ++ ++     + ++  Y+ +I+GLC+ GR+  A+ 
Sbjct: 150 YADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKG 209

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L ++   GL P   TYN L+   C++    EA ++  +M  +G  PD  SF+++I  F 
Sbjct: 210 ILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFS 269

Query: 192 VKNETDRASSFLK 204
                D+A  + +
Sbjct: 270 RNRHLDQALVYFR 282



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +F+ +   I+G C+   +  A+       ++ I  D+  Y++LI+G C   
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A EL+D M+++ I    +TY  LI+          A  L   +     +  +   +
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 472

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI G CR G   +A + L ++  KG+ P  ++YN LING  ++  + +A   + +M+++
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N V+ GF  +     A   L+K
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRK 563



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++G+  D+  +SSLI        L +A+  F  M   G+  + V Y  L+H        
Sbjct: 250 LRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNM 309

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ +   +      L++  Y+ +++GLC+     +A K  D++ E+G +P   T+  L
Sbjct: 310 LEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 369

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           I+G C+ G + +A  L   M ++   PD  ++NT+I GF    E ++AS  
Sbjct: 370 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 44/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I +N +CK  + D            GI  D+  Y++LI   C    L+EA E+ 
Sbjct: 117 NVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIM 176

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + M  +G+   L TYN +I +   K+GR++ A  +L  +       +   Y+ ++   CR
Sbjct: 177 NSMADKGLKPSLFTYNAII-NGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCR 235

Query: 123 VGRWEEAR----------------------------KKLDQ-------LSEKGLVPGVVT 147
              + EA+                            + LDQ       + + GLVP  V 
Sbjct: 236 RDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVI 295

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y +L++G C+ G ++EA K+  +M E+GC  D  ++NT++ G 
Sbjct: 296 YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGL 338



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 5/191 (2%)

Query: 17  IRINGMCKIREIDSAIKKGIC----LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           IR +G+ ++ E+  A+   +C     +  V+  LI       +L+E  E F  + ++G  
Sbjct: 22  IRRSGVSRV-EVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYL 80

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             +   N L+    +      A  + + + R   ELN+   +++++ LC+ G++++ +  
Sbjct: 81  VSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSF 140

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           L ++   G+   +VTYN LI   C++G++ EA +++  M +KG  P   ++N +I G   
Sbjct: 141 LSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCK 200

Query: 193 KNETDRASSFL 203
           K    RA   L
Sbjct: 201 KGRYARAKGIL 211


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 13/192 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK +++D  ++       +G+  D   YS+LI G C   +L  A ++F +M
Sbjct: 407 TYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEM 466

Query: 67  VAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           V+QG+   ++TY  L+    DN E +    A+ +L  + + K EL+I +Y+++I G+C  
Sbjct: 467 VSQGVHPGIMTYAILLDGLCDNGELE---EALGILDQMHKCKMELDIGIYNIIIHGMCNA 523

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + ++A      L  KG+   + +YNI+++GLCK+  + EAD L  +MKE G  PD  ++
Sbjct: 524 NKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTY 583

Query: 184 NTVIQGFLVKNE 195
           NT+I+  L  N+
Sbjct: 584 NTLIRAHLRGND 595



 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  ++ K +   Y I I+ +CK   +D A+        KGI  +VF Y+SLI   C+F R
Sbjct: 256 MEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +  +L   M+ + IT  +VT++ LI D+  K+G+ + A  L   +     E N   Y+
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALI-DSLVKEGKLTEAKDLYNEMITRGIEPNTITYN 374

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC   R +EA + +D +  KG  P + TYNILING CK   + +  +L  +M  +
Sbjct: 375 SLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR 434

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D+ +++T+IQGF
Sbjct: 435 GMIADTVTYSTLIQGF 450



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   YG  +N MCK     SA+        + I   V  Y+ +I+ LC   RL +A+ 
Sbjct: 227 QPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALS 286

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
            F +M  +GI A + TYN LI  ++   GR+   A LL+ +   K   N+  +S +ID L
Sbjct: 287 FFSEMETKGIKANVFTYNSLIG-SFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSL 345

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+  EA+   +++  +G+ P  +TYN LI GLC    + EA++++  M  KGC PD 
Sbjct: 346 VKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDI 405

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I GF    + D      +K
Sbjct: 406 WTYNILINGFCKAKQVDDGMRLFRK 430



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C  + +D A       + KG   D++ Y+ LING C   ++ + + LF
Sbjct: 369 NTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLF 428

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM  +G+ A+ VTY+ LI    + +    A  + Q +        I  Y++++DGLC  
Sbjct: 429 RKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDN 488

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  EEA   LDQ+ +  +   +  YNI+I+G+C    + +A  L   +  KG   D  S+
Sbjct: 489 GELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSY 548

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++ G   ++    A +  +K
Sbjct: 549 NIMLSGLCKRSSLSEADALFRK 570



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 7/191 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAV 60
           ++ N   +   +NG+C    +  A++   C+       D+   ++++NGLC  +R+ EAV
Sbjct: 156 YEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAV 215

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L  +M+A G      TY P+++   +     SA+ LL+ +E  K + ++  Y+++ID L
Sbjct: 216 DLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNL 275

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ GR ++A     ++  KG+   V TYN LI   C  G   +  +LL  M  +   P+ 
Sbjct: 276 CKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNV 335

Query: 181 TSFNTVIQGFL 191
            +F+ +I   +
Sbjct: 336 VTFSALIDSLV 346



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN  C+ R++  A        K G   +   +++L+NGLC   R+ EAVEL 
Sbjct: 124 DLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV 183

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV      +L+T N +++    K     A+ L+  +  +  + N   Y  +++ +C+ 
Sbjct: 184 DCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKS 243

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   L ++  + + P VVTY I+I+ LCK G + +A     +M+ KG   +  ++
Sbjct: 244 GNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTY 303

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N++I  F      D  +  L+
Sbjct: 304 NSLIGSFCSFGRWDDGAQLLR 324



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 5/185 (2%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
            +CK  E+     KGI  D++  + +IN  C   +L  A     K+   G     VT+N 
Sbjct: 111 ALCKQMEL-----KGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNT 165

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L++    +   F A+ L+  +   ++  ++   + +++GLC   R  EA   + ++   G
Sbjct: 166 LLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANG 225

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P   TY  ++N +CK G    A  LL +M+ +   P   ++  +I         D A 
Sbjct: 226 CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDAL 285

Query: 201 SFLKK 205
           SF  +
Sbjct: 286 SFFSE 290



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +AV LF  M+       ++ +N L       +     +AL + +E      ++   +++I
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMI 132

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +  CR  +   A   + ++ + G  P  VT+N L+NGLC +G + EA +L+  M      
Sbjct: 133 NCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHV 192

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           PD  + NT++ G  +K+    A   + + M
Sbjct: 193 PDLITLNTIVNGLCLKDRVSEAVDLIARMM 222


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 115/200 (57%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC  +RL +A +L ++M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEM 393

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+T +L T+  LIH  + +QG F +A+ L  TL R +   ++  Y+ +IDG+CR G 
Sbjct: 394 EERGVTPDLCTFTTLIH-GYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGD 452

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A +  D +  + ++P  +TY+ILI+  C+KG + +A   L +M +KG  P+  ++N+
Sbjct: 453 LAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+G+       +   FL+K
Sbjct: 513 IIKGYCRSGNVKKGQQFLQK 532



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D  +Y+ +I G C    + EA+ + D+MV  G   ++VTYN L++   ++     A
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  +E      ++  ++ +I G CR G +E A +  D L  + L P VVTYN LI+G
Sbjct: 387 EKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDG 446

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +C+KG + +A++L   M  +   P+  +++ +I     K + + A  FL +
Sbjct: 447 MCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDE 497



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+       ++  D+ +++ +  DV  Y+SLI+G+C    L +A EL+D M A+ I
Sbjct: 409 IHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TY+ LI  + EK     A   L  + +     NI  Y+ +I G CR G  ++ ++
Sbjct: 469 LPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            L ++ +  + P ++T+N LI+G  K+  +  A  +   M+++   PD+ ++N +I GF
Sbjct: 529 FLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGF 587



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I ++  CK  E D A        K+ +  DV  ++ LI+       +  A+ L 
Sbjct: 156 NAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M  +G+   +VTYN ++     K  RF  A  + +T+++     ++  ++++I G CR
Sbjct: 216 DSMANRGLKPGIVTYNSVL-KGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG  +EA K   ++  + + P VV+++ LI    ++G +  A   L +MK  G  PD   
Sbjct: 275 VGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVI 334

Query: 183 FNTVIQGF 190
           +  VI GF
Sbjct: 335 YTMVIGGF 342



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  +++ A       +KKG   ++  Y+S+I G C   
Sbjct: 462 DMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSG 521

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K+  +   KM    +  +L+T+N LIH   +++    A  +   +E++    +   Y+
Sbjct: 522 NVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYN 581

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G    G  ++A +    + + G+ P   TY  LING    G   +A +L  +M  +
Sbjct: 582 MIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641

Query: 175 GCFPD 179
           G  PD
Sbjct: 642 GFAPD 646



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 88/168 (52%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++ +  + +++  C       A  +  +M  + +  ++VT+N LI   +      +A+AL
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++     +  I  Y+ V+ GLC+  R+++A++    + +  + P V ++NILI G C+
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA K   +M+ +   PD  SF+ +I  F  + E D A ++L++
Sbjct: 275 VGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS   +G+   +  Y+S++ GLC   R  +A E+F  M    +  ++ ++N LI     
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+   + ++      ++  +S +I    R G  + A   L ++   GLVP  V 
Sbjct: 275 VGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVI 334

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y ++I G C+ G + EA ++  +M   GC PD  ++NT++ G 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGL 377


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 41/232 (17%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EI++A+    +  +  DV  Y++++  LC   +LK+A+E+ D+M+ +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 70  -----------------------------------GITAELVTYNPLIHDNWEKQGRFS- 93
                                              G T ++VTYN L+ +   K+GR   
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV-NGICKEGRLDE 292

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+  L  +     + N+  +++++  +C  GRW +A K L  +  KG  P VVT+NILIN
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LC+KG++  A  +L +M + GC P+S S+N ++ GF  + + DRA  +L++
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFN 54
           D+     + N   + I +  MC   R +D+       ++KG    V  ++ LIN LC   
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A+++ +KM   G     ++YNPL+H   +++    A+  L+ +       +I  Y+
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++  LC+ G+ E+A + L+QLS KG  P ++TYN +I+GL K G   +A KLL +M+ K
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ ++++++ G   + + D A  F  +
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  + F  +   + I IN +C+   +  AI       + G   +   Y+ L++G C   
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A+E  ++MV++G   ++VTYN ++    +      A+ +L  L        +  Y+
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGL + G+  +A K LD++  K L P  +TY+ L+ GL ++G + EA K   + +  
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P++ +FN+++ G     +TDRA  FL
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R +G   +   Y + +NG+CK   +D AIK        G   +V  ++ ++  +C+
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R  +A +L   M+ +G +  +VT+N LI+    K     A+ +L+ + +   + N   
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C+  + + A + L+++  +G  P +VTYN ++  LCK G + +A ++L Q+ 
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            KGC P   ++NTVI G     +T +A   L
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +   + N   Y   ++G CK +++D AI+       +G   D+  Y++++  LC   +
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +++AVE+ +++ ++G +  L+TYN +I D   K G+   A+ LL  +     + +   YS
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVI-DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL R G+ +EA K   +    G+ P  VT+N ++ GLCK      A   LV M  +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548

Query: 175 GCFPDSTSFNTVIQGF 190
           GC P+ TS+  +I+G 
Sbjct: 549 GCKPNETSYTILIEGL 564



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 32/180 (17%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+E  +  + MV  G   +++    LI           A  +L+ LE      ++  Y++
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177

Query: 116 VIDGLCRV--------------------------------GRWEEARKKLDQLSEKGLVP 143
           +I G C+                                 G+ ++A + LD++ ++   P
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V+TY ILI   C+   +  A KLL +M+++GC PD  ++N ++ G   +   D A  FL
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR+G+  +A K L+ L   G VP V+TYN++I+G CK G I  A  +L +M  
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               PD  ++NT+++      +  +A   L +
Sbjct: 201 S---PDVVTYNTILRSLCDSGKLKQAMEVLDR 229



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 16/193 (8%)

Query: 21  GMCKIREIDSAIKKGICLDVF------VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           G C I++     K+G  LDV       + S +  G    NRL   V    K+ + G+   
Sbjct: 13  GFCLIQQFHREYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLV-LVSAASKVESSGLNGR 71

Query: 75  LVTYNPLI--HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
              +  L   + N    G +S++     LE    E N  +  +V     R G  EE  K 
Sbjct: 72  AQKFETLSSGYSNSNGNGHYSSVNSSFALE--DVESNNHLRQMV-----RTGELEEGFKF 124

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           L+ +   G VP ++    LI G C+ G   +A K+L  ++  G  PD  ++N +I G+  
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184

Query: 193 KNETDRASSFLKK 205
             E + A S L +
Sbjct: 185 AGEINNALSVLDR 197


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 9/202 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC  +RL +A EL ++M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM 393

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+T +L T+  LIH  + + G F  A+ L  TL   +   ++  Y+ +IDG+CR G 
Sbjct: 394 KERGVTPDLCTFTTLIH-GYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGD 452

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A +  D +  + + P  VTY+ILI+  C+KG + EA   L +M  KG  P+  ++N+
Sbjct: 453 LAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNS 512

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I+G+       +   FL+K M
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMM 534



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 91/169 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D  +Y+ +I G C    + EA+ + D+MV  G   ++VTYN L++   ++     A
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  ++      ++  ++ +I G CR G +E+A +  D L  + L P VV YN LI+G
Sbjct: 387 EELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDG 446

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +C+KG + +A++L   M  +  FP+  +++ +I     K + + A  FL
Sbjct: 447 MCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFL 495



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 7/194 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+       ++  D+ + + +  DV  Y+SLI+G+C    L +A EL+D M A+ I
Sbjct: 409 IHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               VTY+ LI  + EK     A   L  +       NI  Y+ +I G CR G  ++ ++
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L ++ +  ++P ++T+N LI+G  K+  +  A  +   M+++   PD+ ++N +I GF 
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFS 588

Query: 192 VKNETDRASSFLKK 205
            +   + A    KK
Sbjct: 589 EQGNMEEAGRVFKK 602



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  +++ A       + KG   ++  Y+S+I G C   
Sbjct: 462 DMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSG 521

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K+  +   KM+   I  +L+T+N LIH   +++    A  +   +E++  + +   Y+
Sbjct: 522 NVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYN 581

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G    G  EEA +   ++   G+ P   TY  LING    G   EA +L  +M  +
Sbjct: 582 MIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641

Query: 175 GCFPD 179
           G  PD
Sbjct: 642 GFAPD 646



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 92/168 (54%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++ +  + +++  C      +A  +  +M  + +  ++VT+N LI   +      +A+AL
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++     +  I  ++ V+ GLC+  R+++A++    + +  + P V ++NILI G C+
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA K   +M+++G  PD  SF+ +I  F  + + D A+++L++
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I ++  CK  E D A        K+ +  DV  ++ LI+       +  A+ L 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M  +G+   +VT+N ++     K  RF  A  + + +++     ++  ++++I G CR
Sbjct: 216 DSMANKGLKPGIVTFNSVL-KGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG  EEA K   ++ ++G+ P VV+++ LI     +G +  A   L +MK  G  PD   
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI 334

Query: 183 FNTVIQGF 190
           +  VI GF
Sbjct: 335 YTMVIGGF 342



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS   KG+   +  ++S++ GLC   R  +A E+F  M    +  ++ ++N LI     
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 AM   + +++     ++  +S +I      G+ + A   L ++   GLVP  V 
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI 334

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y ++I G C+ G + EA ++  +M   GC PD  ++NT++ G 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGL 377


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 122/214 (57%), Gaps = 10/214 (4%)

Query: 1   FDLTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGL 50
           FDL  +  +G   +   Y   I+G CK+++++ A       + KG+  DVF ++SLI G 
Sbjct: 318 FDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGF 377

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
               +   A ELF  M  QG    L T   ++   ++      AM L + +E+   +L+I
Sbjct: 378 FEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDI 437

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +Y++++DG+C++G+  +ARK L  +  KGL     T+NI+I GLC++G++ +A++LL +
Sbjct: 438 VIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRK 497

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           MKE GC P+  S+N  +QG L K +  R+  +L+
Sbjct: 498 MKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQ 531



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           + I  G+C+        +NGLC       A+E   KMV + +   +V YN ++ D   K+
Sbjct: 151 NTIANGLCI--------VNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAIL-DGLCKR 201

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLC-RVGRWEEARKKLDQL-SEKGLVPGVV 146
           G    A+ L   +     E N+  Y+ +I GLC  VG W E     +++ +EKG+VP V 
Sbjct: 202 GLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQ 261

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           T++IL+NG CK+G+++ A+ ++  M   G   +  ++N++I G+ ++N  + A
Sbjct: 262 TFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEA 314



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 46/218 (21%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+CKI +   A       +K+ +  +V VY+++++GLC    + EA+ LF +M    +
Sbjct: 160 VNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNV 219

Query: 72  TAELVTYNPLIH------DNW-EKQGRFSAMAL-------LQTLE--------------- 102
              +VTYN LI         W E  G F+ M         +QT                 
Sbjct: 220 EPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRA 279

Query: 103 --------RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE--KGLVPGVVTYNILI 152
                   R   ELN+  Y+ +I G C   R EEA +  D +    +G +P VVTYN LI
Sbjct: 280 ESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLI 339

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +G CK   + +A  LL +M  KG  PD  ++ ++I GF
Sbjct: 340 HGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGF 377



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 39  DVFVYSSLINGLCTFNRLKEAV----ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           D    + L+N + T      AV    + F +M+       +  +N L     + Q   +A
Sbjct: 36  DAAARTRLLNSIRTLQSADAAVSVSVDFFHRMLTLNPFPCIQDFNLLFGIVAKSQHFATA 95

Query: 95  MALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL-- 151
           ++L++TL    YE+ ++   +++I+ LCR+ +       L  +++ GL P +VT N +  
Sbjct: 96  ISLIKTLHSLGYEIADVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIAN 155

Query: 152 ----INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               +NGLCK G    A + L +M ++   P+   +N ++ G 
Sbjct: 156 GLCIVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGL 198



 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++GMCK+ +++ A K       KG+ +D + ++ +I GLC    L +A EL  KM
Sbjct: 439 IYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKM 498

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
              G      +YN  +     K     +   LQ ++   + ++     L+I
Sbjct: 499 KENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLI 549


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  YS+LI G C   
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWE------------------- 87
           R++E +ELF +M  +G+    VTY  LIH        DN +                   
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472

Query: 88  -------KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                  K G+ + AM + + L+R   E +I  Y+++I+G+C+ G+ E+  +    LS K
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P V+ YN +I+G C+KG   EAD LL +MKE G  P+S ++NT+I+  L   + + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592

Query: 200 SSFLKK 205
           +  +K+
Sbjct: 593 AELIKE 598



 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + +  +Y   I+G+CK + +D A+        KGI  DVF YSSLI+ LC + R  +A
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT++ LI D + K+G+   A  L   + +   + +I  YS +I+
Sbjct: 313 SRLLSDMIERKINPNVVTFSALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA+   + +  K   P VVTY+ LI G CK   + E  +L  +M ++G   
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++ T+I GF    + D A    K+
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQ 458



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C  + I       D  ++ G   D F +++LI+GL   N+  EAV L D+MV +G 
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A++LL+ +E+ K E ++ +Y+ +IDGLC+    ++A  
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P V TY+ LI+ LC  G   +A +LL  M E+   P+  +F+ +I  F+
Sbjct: 280 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   N   +   I+   K  ++       D  IK+ I  D+F YSSLING C  +
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA  +F+ M+++     +VTY+ LI    + +     M L + + +     N   Y+
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYT 437

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI------------- 161
            +I G  +    + A+    Q+   G+ P ++TYNIL++GLCK G +             
Sbjct: 438 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 497

Query: 162 -MEAD---------------------KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ME D                     +L   +  KG  P+  ++NT+I GF  K   + A
Sbjct: 498 TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557

Query: 200 SSFLKK 205
            S LKK
Sbjct: 558 DSLLKK 563



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I IN  C+  ++  A+       K G   D+   SSL+NG C   R+ +AV L 
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   +  T+  LIH  +       A+AL+  + +   + ++  Y  V++GLC+ 
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L ++ +  +   VV YN +I+GLCK   + +A  L  +M  KG  PD  ++
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY 296

Query: 184 NTVIQ 188
           +++I 
Sbjct: 297 SSLIS 301



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +   N+ +  + L ++M   GI+ +L TY+  I+    +     A+A+L  + 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   S +++G C   R  +A   +DQ+ E G  P   T+  LI+GL       
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ QM ++GC PD  ++ TV+ G   + + D A S LKK
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKK 248



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ YS  IN  C  ++L  A+ +  KM+  G   ++VT + L++     +    A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y+ +   ++ +I GL    +  EA   +DQ+ ++G  P +VTY  ++NG
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LCK+G I  A  LL +M++     D   +NT+I G       D A
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I+G  + R+ D+A       +  G+  ++  Y+ L++GLC   
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH---------DNWEKQGRFSAMALLQTLERDK 105
           +L +A+ +F+ +    +  ++ TYN +I          D WE         L   L    
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE---------LFCNLSLKG 533

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              N+  Y+ +I G CR G  EEA   L ++ E G +P   TYN LI    + G    + 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593

Query: 166 KLLVQMKEKGCFPDSTSFNTV 186
           +L+ +M+  G   D+++   V
Sbjct: 594 ELIKEMRSCGFAGDASTIGLV 614



 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 35/145 (24%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L N L    ++ +AV+LF  MV       +V +N L+          SA+A     + +K
Sbjct: 54  LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLL----------SAVA-----KMNK 98

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +EL I +                     +Q+   G+   + TY+I IN  C++  +  A 
Sbjct: 99  FELVISLG--------------------EQMQTLGISHDLYTYSIFINCFCRRSQLSLAL 138

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
            +L +M + G  PD  + ++++ G+
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGY 163


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 41/232 (17%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EI++A+    +  +  DV  Y++++  LC   +LK+A+E+ D+M+ +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 70  -----------------------------------GITAELVTYNPLIHDNWEKQGRFS- 93
                                              G T ++VTYN L+ +   K+GR   
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLV-NGICKEGRLDE 292

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+  L  +     + N+  +++++  +C  GRW +A K L  +  KG  P VVT+NILIN
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LC+KG++  A  +L +M + GC P+S S+N ++ GF  + + DRA  +L++
Sbjct: 353 FLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  + F  +   + I IN +C+   +  AI       K G   +   Y+ L++G C   
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEK 393

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A+E  ++MV++G   ++VTYN ++    +      A+ +L  L        +  Y+
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGL + G+  +A K LD++  K L P  +TY+ L+ GL ++G + EA K   + +  
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P++ +FN+++ G     +TDRA  FL
Sbjct: 514 GVRPNAVTFNSIMLGLCKTRQTDRAIDFL 542



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFN 54
           D+     + N   + I +  MC   R +D+       ++KG    V  ++ LIN LC   
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A+++ +KM   G     ++YNPL+H   +++    A+  L+ +       +I  Y+
Sbjct: 359 LLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++  LC+ G+ E+A + L+QLS KG  P ++TYN +I+GL K G   +A KLL +M+ K
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ ++++++ G   + + D A  F  +
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R +G   +   Y + +NG+CK   +D AIK        G   +V  ++ ++  +C+
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R  +A +L   M+ +G +  +VT+N LI+    K     A+ +L+ + +   + N   
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLS 381

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C+  + + A + L+++  +G  P +VTYN ++  LCK G + +A ++L Q+ 
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            KGC P   ++NTVI G     +T +A   L
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C++ +   A K        G   DV  Y+ +I+G C    +  A+ + D+M    +
Sbjct: 144 IRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SV 200

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           + ++VTYN ++    +      AM +L + L+RD Y  ++  Y+++I+  CR     +A 
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP-DVITYTILIEATCRDSGVGQAM 259

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K LD++ ++G  P VVTYN+L+NG+CK+G + EA K L  M   GC P+  + N +++  
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK +++D AI+       +G   D+  Y++++  LC   ++++AVE+ +++ 
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  +     + +   YS ++ GL R G+ 
Sbjct: 442 SKGCSPVLITYNTVI-DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K   +    G+ P  VT+N ++ GLCK      A   LV M  +GC P  TS+  +
Sbjct: 501 DEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTIL 560

Query: 187 IQGF 190
           I+G 
Sbjct: 561 IEGL 564



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 32/180 (17%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+E  +  + MV  G   +++    LI           A  +L+ LE      ++  Y++
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNV 177

Query: 116 VIDGLCRV--------------------------------GRWEEARKKLDQLSEKGLVP 143
           +I G C+                                 G+ ++A + LD++ ++   P
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V+TY ILI   C+   + +A KLL +M+++GC PD  ++N ++ G   +   D A  FL
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR+G+  +A K L+ L   G VP V+TYN++I+G CK G I  A  +L +M  
Sbjct: 141 TTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               PD  ++NT+++      +  +A   L +
Sbjct: 201 S---PDVVTYNTILRSLCDSGKLKQAMEVLDR 229



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 14/192 (7%)

Query: 21  GMCKIREIDSAIKKGICLDVF--VYSSLINGLCTFNRLKEAVELFD---KMVAQGITAEL 75
           G C I++     K+G  LDV      S+ + +  ++R +  + L     ++ + G+    
Sbjct: 13  GFCLIQQFHRECKRGNKLDVSGRTTRSISSKVPLWSRKRNRLVLVSAASQVESSGLNGRA 72

Query: 76  VTYNPLI--HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
             ++ L   H N    G FS+      LE    E N  +  LV     R G  EE  K L
Sbjct: 73  QKFDTLASGHSNSNGNGHFSSANSSFVLE--DVESNNHLRQLV-----RTGELEEGFKFL 125

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           + +   G VP ++    LI G C+ G   +A K+L  ++  G  PD  ++N +I G+   
Sbjct: 126 ENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKA 185

Query: 194 NETDRASSFLKK 205
            E + A S L +
Sbjct: 186 GEINNALSVLDR 197


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   + G+C  R    A+         G+  DV  Y +LI GLC  + L  A+E
Sbjct: 120 RPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALE 179

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L D+M   G+   +V Y+ L+   + + GR+  +  + + + R   + ++ +++ +ID L
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLR-GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDL 238

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  +A K  D + ++GL P VVTYN+LIN LCK+G + EA  L  +M +KG  PD 
Sbjct: 239 CKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDV 298

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I G     E D A SFL++
Sbjct: 299 VTYNTLIAGLSGVLEMDEAMSFLEE 323



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 8/195 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G  ++ ++  A+         G+  D F YS LING      +  A +  
Sbjct: 369 NLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFL 428

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +GI AEL  Y PL+    ++     AM L   ++++   L+   YS +I G C+ 
Sbjct: 429 CTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKN-CGLDAIAYSTMIHGACKS 487

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +  ++ +  + ++GL P  VTY++LIN   K G + EA+++L QM   G  PD   F
Sbjct: 488 GDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVF 547

Query: 184 NTVIQGFLVKNETDR 198
           +++I+G+  + +TD+
Sbjct: 548 DSLIKGYSAEGQTDK 562



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D++ +  K +  ++   I+ +CK        +  D  +++G+  +V  Y+ LIN LC   
Sbjct: 218 DMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEG 277

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEV 112
            ++EA+ L  +M  +G+  ++VTYN LI           AM+ L+ + +     E ++  
Sbjct: 278 SVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVT 337

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ VI GLC++GR  +A K  + ++E+G +  +VTYN LI G  +   +  A  L+ ++ 
Sbjct: 338 FNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELA 397

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             G  PDS +++ +I GF    E DRA  FL
Sbjct: 398 ISGLEPDSFTYSILINGFSKMWEVDRAEKFL 428



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 11/192 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  I G+C   E+D+A++        G+  +V VYS L+ G C   R ++  +
Sbjct: 155 RADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGK 214

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGL 120
           +F+ M  +GI  +++ +  LI D+  K+G+    A ++ +   +  E N+  Y+++I+ L
Sbjct: 215 VFEDMSRRGIKPDVIMFTGLI-DDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSL 273

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF--P 178
           C+ G   EA     ++ +KG+ P VVTYN LI GL     + EA   L +M +      P
Sbjct: 274 CKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEP 333

Query: 179 DSTSFNTVIQGF 190
           D  +FN+VI G 
Sbjct: 334 DVVTFNSVIHGL 345



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 8/181 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING  K+ E+D A K       +GI  ++F Y  L+  +C    ++ A+ LF++M 
Sbjct: 408 YSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEM- 466

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +    + + Y+ +IH   +     +   L+Q +  +    +   YS++I+   ++G  E
Sbjct: 467 DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLE 526

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L Q++  G VP V  ++ LI G   +G   +  KL+ +M+ K    D    +T+I
Sbjct: 527 EAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586

Query: 188 Q 188
           +
Sbjct: 587 R 587



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 43/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIK------KGICL---DVFVYSSLINGLCTFNRLKEAVELFDK 65
           Y   I G+  + E+D A+       +G  +   DV  ++S+I+GLC   R+ +AV++ + 
Sbjct: 301 YNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREM 360

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G    LVTYN LI           AM L+  L     E +   YS++I+G  ++  
Sbjct: 361 MAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWE 420

Query: 126 WEEARKKLDQLSEKGL-------VP---------------------------GVVTYNIL 151
            + A K L  + ++G+       +P                             + Y+ +
Sbjct: 421 VDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTM 480

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G CK G +    +L+  M ++G  PD+ +++ +I  +    + + A   LK+
Sbjct: 481 IHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQ 534



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 39  DVFVYSSLINGLCTF--NRLKEAVELFDKMVAQGITAE---LVTYNPLIHDNWEKQGRFS 93
           D   Y++++  LC    + L++A  L   M  +   A     V+Y  ++      +    
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL++++      ++  Y  +I GLC     + A + LD++   G+ P VV Y+ L+ 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           G C+ G   +  K+   M  +G  PD   F  +I     + +T +A+
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAA 248



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 113 YSLVIDGLCRVG--RWEEARKKLDQLSEKG---LVPGVVTYNILINGLCKKGMIMEADKL 167
           Y+ V+  LCR G     +AR  L  +S +      P  V+Y  ++ GLC      EA  L
Sbjct: 86  YNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVAL 145

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L  M+  G   D  ++ T+I+G    +E D A   L
Sbjct: 146 LRSMQASGVRADVVTYGTLIRGLCDASELDAALELL 181


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           + + N  +Y   I+G+CK + +D A         KGI  DVF Y+SLI+ LC + R  +A
Sbjct: 251 KIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDA 310

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT+N LI D + K+G+   A  L   + +   + NI  Y+ +I+
Sbjct: 311 SRLLSDMIERKINPNVVTFNSLI-DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 369

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA++    +  K  +P VVTYN LI G CK   + E  +L  +M ++G   
Sbjct: 370 GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 429

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++NT+IQG     + D A    KK
Sbjct: 430 NTVTYNTLIQGLFQAGDCDMAQKIFKK 456



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 115/242 (47%), Gaps = 44/242 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   ING C    +D A       + K    DV  Y++LI G C   
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAK 410

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------------------------------- 83
           R++E +ELF +M  +G+    VTYN LI                                
Sbjct: 411 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 470

Query: 84  ---DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              D   K G+   A+ + + L++ K E NI  Y+++I+G+C+ G+ E+       LS K
Sbjct: 471 ILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P V+ Y  +I+G C+KG+  EAD L  +MKE G  PDS  +NT+I+  L   + D+A
Sbjct: 531 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL--RDGDKA 588

Query: 200 SS 201
           +S
Sbjct: 589 AS 590



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 104/180 (57%), Gaps = 2/180 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MVA+G
Sbjct: 159 NGYCHGKRISEAVAL--VDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARG 216

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +L TY  +++   ++     A++LL+ +E+ K E N+ +Y+ +IDGLC+    ++A 
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              +++  KG+ P V TYN LI+ LC  G   +A +LL  M E+   P+  +FN++I  F
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID  + +G   D+F Y +++NGLC    +  A+ L  KM    I A +V YN +I    +
Sbjct: 209 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCK 268

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A  L   +E    + ++  Y+ +I  LC  GRW +A + L  + E+ + P VVT
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI+   K+G ++EA+KL  +M ++   P+  ++N++I GF + +  D A
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 380



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I +N  C+  ++  A+       K G   D+   SSL+NG C   R+ EAV L 
Sbjct: 115 NHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + VT+N LIH  +       A+AL+  +     + ++  Y  V++GLC+ 
Sbjct: 175 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L ++ +  +   VV YN +I+GLCK   + +A  L  +M+ KG  PD  ++
Sbjct: 235 GDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 184 NTVIQ 188
           N++I 
Sbjct: 295 NSLIS 299



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   N   +   I+   K  ++       D  I++ I  ++  Y+SLING C  +
Sbjct: 316 DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 375

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA ++F  MV++    ++VTYN LI    + +     M L + + +     N   Y+
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 435

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL + G  + A+K   ++   G+ P ++TY+IL++GLCK G + +A  +   +++ 
Sbjct: 436 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 495

Query: 175 GCFPDSTSFNTVIQG 189
              P+  ++N +I+G
Sbjct: 496 KMEPNIYTYNIMIEG 510



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I G+ +  + D A       +  G+  D+  YS L++GLC + 
Sbjct: 421 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 480

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +   + TYN +I    +         L  +L     + N+ +Y+
Sbjct: 481 KLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 540

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  
Sbjct: 541 TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC 600

Query: 175 GCFPDSTSFNTVIQ 188
           G   D+++ + VI 
Sbjct: 601 GFVGDASTISMVIN 614



 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 35/147 (23%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+AL   + + +   +I  +S ++  + ++ +++      +Q+   G+     TY+IL+N
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLN 124

Query: 154 GLCKKGM-----------------------------------IMEADKLLVQMKEKGCFP 178
             C++                                     I EA  L+ QM E G  P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKP 184

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ +FNT+I G  + N+   A + + +
Sbjct: 185 DTVTFNTLIHGLFLHNKASEAVALIDR 211


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I G CK  EID A+    +  +  DV  Y++++  LC   +LKEA+E+ D+ + +
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQR 237

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               +++TY  LI       G   AM LL  + +   + ++  Y+++I+G+C+ GR +EA
Sbjct: 238 ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEA 297

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ +   G  P V+T+NI++  +C  G  M+A++LL  M  KGC P   +FN +I  
Sbjct: 298 IKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINF 357

Query: 190 FLVKNETDRASSFLKK 205
              K    RA   L+K
Sbjct: 358 LCRKRLLGRAIDVLEK 373



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 5/200 (2%)

Query: 6   QRFKGNFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + F  N H+  +  NG  +  ++ ++  I +G   DV   +SLI G C   + K+A  + 
Sbjct: 105 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIM 164

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + +   G   +++TYN LI   + K G       L+ LER     ++  Y+ ++  LC  
Sbjct: 165 EILENSGAVPDVITYNVLI-GGYCKSGEIDKA--LEVLERMSVAPDVVTYNTILRSLCDS 221

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + LD+  ++   P V+TY ILI   C    + +A KLL +M++KGC PD  ++
Sbjct: 222 GKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 281

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +I G   +   D A  FL
Sbjct: 282 NVLINGICKEGRLDEAIKFL 301



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+ R +  AI       K G   +   Y+ L++G C   ++  A+E  + M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G   ++VTYN L+    +     +A+ +L  L        +  Y+ VIDGL +VG+ 
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L+++  KGL P ++TY+ L+ GL ++G + EA K+   M+     P + ++N +
Sbjct: 470 EYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAI 529

Query: 187 IQGFLVKNETDRASSFL 203
           + G     +T RA  FL
Sbjct: 530 MLGLCKAQQTSRAIDFL 546



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 9   KGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + I +  MC         R +   ++KG    V  ++ LIN LC    L  A++
Sbjct: 310 KPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAID 369

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +KM   G     ++YNPL+H   +++    A+  L+ +       +I  Y+ ++  LC
Sbjct: 370 VLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC 429

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ + A + L+QLS KG  P ++TYN +I+GL K G    A +LL +M+ KG  PD  
Sbjct: 430 KDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDII 489

Query: 182 SFNTVIQGFLVKNETDRA 199
           +++T+++G   + + D A
Sbjct: 490 TYSTLLRGLGREGKVDEA 507



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + ING+CK   +D AIK        G   +V  ++ ++  +C+
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCS 325

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R  +A  L   M+ +G +  +VT+N LI+    K+    A+ +L+ + +     N   
Sbjct: 326 TGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLS 385

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C+  + + A + L+ +  +G  P +VTYN L+  LCK G +  A ++L Q+ 
Sbjct: 386 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KGC P   ++NTVI G     +T+ A   L++
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEE 478



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C+ +++D AI+       +G   D+  Y++L+  LC   ++  AVE+ +++ 
Sbjct: 386 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL+ + R   + +I  YS ++ GL R G+ 
Sbjct: 446 SKGCSPVLITYNTVI-DGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKV 504

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    +    + P  VTYN ++ GLCK      A   L  M EKGC P   ++  +
Sbjct: 505 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTIL 564

Query: 187 IQGF 190
           I+G 
Sbjct: 565 IEGI 568



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 98  LQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L+ LER  Y+ +I      + +I G CR G+ ++A + ++ L   G VP V+TYN+LI G
Sbjct: 126 LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGG 185

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            CK G   E DK L  ++     PD  ++NT+++      +   A   L + +
Sbjct: 186 YCKSG---EIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQL 235



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +++  NI +  LV     R G  EE  K L+++  +G +P V+    LI G C+ G   +
Sbjct: 105 EEFASNIHLRKLV-----RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKK 159

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A +++  ++  G  PD  ++N +I G+    E D+A   L++
Sbjct: 160 ATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLER 201


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK   +  A       +  G+ LD   Y+ LI+  C   RL EA  +FD M
Sbjct: 512 TYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGM 571

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           VA G++  +VTY   IH    +   + A    + +  +  E N   Y++++  LCR+GR 
Sbjct: 572 VASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRT 631

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +   ++ E+GLVP   TY +LI+G CK+G  + A +L  +M +KG  PD  + N +
Sbjct: 632 ESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNAL 691

Query: 187 IQGF 190
            +GF
Sbjct: 692 FKGF 695



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++TE+    +   Y I +NG C +R +       D  + KG+  D F Y++ I+   T  
Sbjct: 430 EMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIG 489

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            +  A +L ++M+ +GI+++ VTYN LI D   K G    A  L   +  D   L+   Y
Sbjct: 490 AITNAFQLREEMMLRGISSDTVTYNVLI-DGLCKTGSLKDAYVLWMKMVTDGLRLDCVTY 548

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  GR  EA+   D +   GL P VVTY I I+  C++G +  A     +M E
Sbjct: 549 TCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLE 608

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  P+  ++N ++        T+ A
Sbjct: 609 EGVEPNEVTYNVLMHALCRMGRTESA 634



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICL--DVFVYSSLINGLC 51
           D+ +   + +   Y   ++  CK   +D A+        +   CL  DV  Y+ +INGL 
Sbjct: 219 DMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDV-TYNVVINGLA 277

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               L++A +L D M      A   TYNPLI     +     A ALL  +E +     + 
Sbjct: 278 RKGELEKAAQLVDIMRLSK-KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVV 336

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +IDGL + G  E A+ K D++  KGL+P ++TYN LING CK G + +A  L   +
Sbjct: 337 TYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDL 396

Query: 172 KEKGCFPDSTSFNTVIQGF 190
           K  G  P   ++N +I G+
Sbjct: 397 KRAGLGPTVLTYNILIDGY 415



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y  RI+    I  I +A +       +GI  D   Y+ LI+GLC    LK+A  L+ KM
Sbjct: 477 AYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKM 536

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+  + VTY  LIH + E+     A  +   +       ++  Y++ I   CR G  
Sbjct: 537 VTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNL 596

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A     ++ E+G+ P  VTYN+L++ LC+ G    A +   +M E+G  P+  ++  +
Sbjct: 597 YLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLL 656

Query: 187 IQG 189
           I G
Sbjct: 657 IDG 659



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   V  Y++LI+GL      + A   FD+M A+G+  +L+TYN LI+   +      
Sbjct: 329 EGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQ 388

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   L+R      +  Y+++IDG CR+G  E AR+  ++++E+  +P V TY IL+N
Sbjct: 389 ALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMN 448

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G C    +        +M  KG  PD  ++NT I   L 
Sbjct: 449 GSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELT 487



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFN 54
           DL           Y I I+G C++ +++ A      + +  CL DV  Y+ L+NG C   
Sbjct: 395 DLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVR 454

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L      FD+M+++G+  +   YN  I          +A  L + +       +   Y+
Sbjct: 455 NLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGLC+ G  ++A     ++   GL    VTY  LI+  C++G ++EA  +   M   
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P   ++   I  +  +     A  + +K
Sbjct: 575 GLSPSVVTYTIFIHTYCRRGNLYLAYGWFRK 605



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 15/160 (9%)

Query: 51  CTFNRLKEAVE------LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER 103
           C    L++A        ++  M+  G+   + TYN L+ D++ K GR   A+ALL+ +E 
Sbjct: 199 CVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLL-DSFCKAGRMDQAVALLKDMEA 257

Query: 104 DKYEL--NIEVYSLVIDGLCRVGRWEEARKKLD--QLSEKGLVPGVVTYNILINGLCKKG 159
                  N   Y++VI+GL R G  E+A + +D  +LS+K       TYN LI GL  + 
Sbjct: 258 RAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKA---SAFTYNPLITGLLARD 314

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + +A  LL++M+ +G  P   ++NT+I G       + A
Sbjct: 315 FVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAA 354



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCFPDS 180
             RW++ R     + + G+ P + TYN L++  CK G + +A  LL  M+ +  GC P+ 
Sbjct: 207 AARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPND 266

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N VI G   K E ++A+  +
Sbjct: 267 VTYNVVINGLARKGELEKAAQLV 289


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 15/210 (7%)

Query: 11  NFHVYGIRINGMCK---IREIDSAIKKGI--CLDVFV----------YSSLINGLCTFNR 55
           N + + I ++ +CK   I+E  + I K +   L++F           Y++LI+G C   R
Sbjct: 386 NVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGR 445

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A +L D+M  +G    ++TYN L+H   +      A+AL+   +    + ++  Y+ 
Sbjct: 446 LSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNT 505

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+ GR ++A+     L  KG      TYNI+INGLC +G++ EA+ LL +M++ G
Sbjct: 506 LVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNG 565

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD  ++ T+I     K+E D+A   +++
Sbjct: 566 CIPDVVTYQTIIHALFEKDENDKAEKLVRE 595



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 29/207 (14%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   YGI ING+CK+ +  +A++       K +  +V +YS++I+GLC    + +A 
Sbjct: 292 FHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAY 351

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L+ +M+ + I   +VT              F A +L   +       N+  +++++D L
Sbjct: 352 GLYSEMIVKRIPPTVVT--------------FKAFSLFHEMVLKNINPNVYTFNILVDAL 397

Query: 121 CRVGRWEEAR--------KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           C+ G+ +EA+        + L+  +E    P  V+YN LI+G CK G +  A KLL QM+
Sbjct: 398 CKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMR 457

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++G  P+  ++N+++      +  D+A
Sbjct: 458 DRGQPPNVITYNSLLHALCKNHHVDKA 484



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            TE   K N   Y   I+G CK   +  A K       +G   +V  Y+SL++ LC  + 
Sbjct: 421 FTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHH 480

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + +A+ L +    QGI  ++ TYN L+ D   KQGR   A  + Q L    Y L    Y+
Sbjct: 481 VDKAIALVNNFKDQGIQPDMHTYNTLV-DGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYN 539

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           ++I+GLC  G  +EA   L ++ + G +P VVTY  +I+ L +K    +A+KL+ ++
Sbjct: 540 IMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVREL 596



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G   +    ++LI GLC   ++ EA+   D ++A G     VTY  LI+   +     
Sbjct: 254 KMGYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTR 313

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCR-------VGRWEE--------------ARK 131
           +A+ +L+ +E      N+ +YS VIDGLC+        G + E              A  
Sbjct: 314 AALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAFS 373

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--------KEKGCFPDSTSF 183
              ++  K + P V T+NIL++ LCK G I EA  ++++M         E  C P++ S+
Sbjct: 374 LFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSY 433

Query: 184 NTVIQGF 190
           NT+I GF
Sbjct: 434 NTLIDGF 440


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EI SA+    +  +  DV  Y++++  LC   +LKEA+E+ D+ + +
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR 241

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               +++TY  LI    ++ G   AM LL  +     + ++  Y+++I+G+C+ GR +EA
Sbjct: 242 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEA 301

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L+ +   G  P V+T+NI++  +C  G  M+A+K L +M  KGC P   +FN +I  
Sbjct: 302 IRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINF 361

Query: 190 FLVKNETDRASSFLKK 205
              K    RA   L+K
Sbjct: 362 LCRKGLIGRAIDVLEK 377



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   I  AI       + G   +   Y+ L++ LC   +++ A+E  D M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G   ++VTYN L+     K G+   A+ +L  L        +  Y+ VIDGL +VG+
Sbjct: 414 VSRGCYPDIVTYNTLL-TALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGK 472

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A K LD++  KGL P ++TY+ L+ GL ++G + EA      ++E G  P++ ++N+
Sbjct: 473 TDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNS 532

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G     +T RA  FL
Sbjct: 533 IMLGLCKARQTVRAIDFL 550



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 3/176 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + +G   D+   +SLI GLC   +  +A  + + +   G   +++TYN LI   + 
Sbjct: 133 LEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLI-SGYC 191

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K G   +   LQ L+R     ++  Y+ ++  LC  G+ +EA + LD+  ++   P V+T
Sbjct: 192 KTGEIGSA--LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVIT 249

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           Y ILI   CK+  + +A KLL +M++KGC PD  ++N +I G   +   D A  FL
Sbjct: 250 YTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFL 305



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + ING+CK   +D AI+        G   +V  ++ ++  +C+
Sbjct: 270 LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCS 329

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R  +A +   +M+ +G +  +VT+N LI+    K     A+ +L+ + +     N   
Sbjct: 330 TGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLS 389

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++  LC+  + E A + LD +  +G  P +VTYN L+  LCK G +  A ++L Q+ 
Sbjct: 390 YNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            KGC P   ++NTVI G     +TD A   L
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDAIKLL 480



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +CK ++++ AI+       +G   D+  Y++L+  LC   ++  AVE+ +++ 
Sbjct: 390 YNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  ++    + +I  YS ++ GL R G+ 
Sbjct: 450 SKGCSPVLITYNTVI-DGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKV 508

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA      L E G+ P  +TYN ++ GLCK    + A   L  M  +GC P  TS+  +
Sbjct: 509 DEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMIL 568

Query: 187 IQGF 190
           I+G 
Sbjct: 569 IEGL 572



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 9/183 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +  +CK  ++D A++       KG    +  Y+++I+GL    +  +A++L D+M
Sbjct: 424 TYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEM 483

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +++TY+ L+     ++G+   A+A    LE    + N   Y+ ++ GLC+  +
Sbjct: 484 KGKGLKPDIITYSTLV-GGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQ 542

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A   L  +  +G  P   +Y ILI GL  +G+  EA +LL ++  +G    S++   
Sbjct: 543 TVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQV 602

Query: 186 VIQ 188
           V++
Sbjct: 603 VVK 605



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ G+  +A + ++ L + G VP V+TYN+LI+G CK G I  A +LL +M    
Sbjct: 151 LIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVS- 209

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             PD  ++NT+++      +   A   L + M
Sbjct: 210 --PDVVTYNTILRTLCDSGKLKEAMEVLDRQM 239



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R G  EE  K L+ +  +G +P ++    LI GLCK G   +A +++  +++ G  PD
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +I G+    E   A   L +
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDR 205


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + +  +C  R  D A+         G+  DV  Y +LI GLC    + +AVE
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L  +M   GI   +V Y+ L+   + K GR+  +  +   +     E ++ +Y+ +ID L
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQ-GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG+ ++A   +D +  +GL P VVTYN+LIN +CK+G + EA  +L +M EKG  PD 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I+G     E D A   L++
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEE 315



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 14/191 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            + +   YG  I G+C   E+D A++        GI  +V VYSSL+ G C   R ++  
Sbjct: 146 VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVG 205

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           ++F +M  +GI  ++V Y  LI D+  K G+   A  ++  + R   E N+  Y+++I+ 
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLI-DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE--KGCF 177
           +C+ G  +EA   L ++SEKG+ P VVTYN LI GL     ++E D+ +  ++E  +G  
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD---VLEMDEAMWLLEEMVRGYI 321

Query: 178 PDSTSFNTVIQ 188
             S+  + + Q
Sbjct: 322 IQSSQQSAIAQ 332



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA---ELVTYNPLIHDNWEKQGRFSAM 95
           D   Y++++  LC       A  L   M  +   A     V+Y  L+      +    A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            LL+++       ++  Y  +I GLC     ++A + + ++ E G+ P VV Y+ L+ G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           CK G   +  K+ V+M EKG  PD   +  +I       +  +A   +
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVM 243


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 111/185 (60%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+G+CK        + +D+   KG   +   Y++LI+GLC   +L +AV L ++M
Sbjct: 259 IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+       VTY  LI+   +++    A+ LL ++E   Y LN  +YS++I GL + G+ 
Sbjct: 319 VSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKA 378

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA     +++EKG  P +V Y++L++GLC++G   EA ++L +M   GC P++ +++++
Sbjct: 379 EEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSL 438

Query: 187 IQGFL 191
           ++GF 
Sbjct: 439 MKGFF 443



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+ +  N H+Y + I+G+ K  + + A+       +KG   ++ VYS L++GLC   +
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E+ ++M+A G      TY+ L+   ++      A+ + + +++     N   YS+
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV 472

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---K 172
           +IDGLC VGR +EA     ++   G+ P  V Y+ +I GLC  G +  A KL  +M   +
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE 532

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E    PD  ++N ++ G  ++ +  RA   L
Sbjct: 533 EPKSQPDVVTYNILLDGLCMQKDISRAVDLL 563



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK--KGI----CL-DVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I  +CK+R +D AI+  +G+    CL D + Y +L++GLC   R+ EAV L D+M 
Sbjct: 190 FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +   V YN LI D   K+G  + +  L+  +       N   Y+ +I GLC  G+ 
Sbjct: 250 SEGCSPSPVIYNVLI-DGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 308

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L+++     +P  VTY  LINGL K+    +A +LL  M+E+G   +   ++ +
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVL 368

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   + + + A S  +K
Sbjct: 369 ISGLFKEGKAEEAMSLWRK 387


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 11/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T +    N   Y I I G CK + +D A+       +K +   +  Y SL++GLC   
Sbjct: 235 EMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSG 294

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+    EL D+M  +GI A+++TYN LI D   K G    A+AL   ++  +++     +
Sbjct: 295 RISYVWELIDEMHDRGIPADVITYNSLI-DGLCKNGHLDRAIALFNKMKDXRFDR--LTF 351

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++DGLC+ GR ++A++    L  K     V  YN++ING CK+G++ EA  +  +M++
Sbjct: 352 TILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMED 411

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P + +F  +I     K+E D+A   L +
Sbjct: 412 NGCIPSAVTFEIIINALFEKDENDKAEKLLHE 443



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 9/183 (4%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CKI +   AIK    +D       V +Y+++I+ LC +  + EA  LF +M 
Sbjct: 178 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 237

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A+GI+A +V+YN +I    + +    A+ L + + +      I  Y  ++DGLC+ GR  
Sbjct: 238 AKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRIS 297

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
              + +D++ ++G+   V+TYN LI+GLCK G +  A  L  +MK+     D  +F  ++
Sbjct: 298 YVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRF--DRLTFTILL 355

Query: 188 QGF 190
            G 
Sbjct: 356 DGL 358



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +F    I +N  C + +I+         +K+G       +++LI GLC   ++ +A+ 
Sbjct: 102 QPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALH 161

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             DK++AQGI  + V+Y  LI+   +      A+ L++ ++    + N+E+Y+ +ID LC
Sbjct: 162 FHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALC 221

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +     EA     +++ KG+   VV+YNI+I G CK  M+ EA  L  +M +K   P   
Sbjct: 222 KYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIV 281

Query: 182 SFNTVIQGF 190
           ++ +++ G 
Sbjct: 282 TYGSLMDGL 290



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 40/167 (23%)

Query: 14  VYGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            Y   I+G+CK   +D AI      K    D   ++ L++GLC   RLK+A E+F     
Sbjct: 317 TYNSLIDGLCKNGHLDRAIALFNKMKDXRFDRLTFTILLDGLCKGGRLKDAQEVF----- 371

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
                                         Q L   +Y+L++  Y+++I+G C+ G  EE
Sbjct: 372 ------------------------------QDLLTKEYDLDVYPYNVMINGYCKQGLLEE 401

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           A     ++ + G +P  VT+ I+IN L +K    +A+KLL +M  +G
Sbjct: 402 ALTMRSKMEDNGCIPSAVTFEIIINALFEKDENDKAEKLLHEMIARG 448



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           +   + +AV  F+ M+    T  ++ +N ++ D++     +S A++L   LE    + + 
Sbjct: 47  SIQNVDDAVSQFNSMLCMRHTPPVIQFNKIL-DSFAXMKHYSTAVSLSHRLELKGIQPDF 105

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++++  C +G+       L ++ ++G  P  +T+  LI GLC KG + +A    DK
Sbjct: 106 FTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDK 165

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   D  S+ T+I G     +T  A   ++K
Sbjct: 166 LLAQ----GIKFDQVSYGTLINGVCKIGDTRGAIKLVRK 200


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I G CK  EID A+    +  +  DV  Y++++  LC   +LKEA+E+ D+ + +
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR 238

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               +++TY  LI       G   AM LL  + +   + ++  Y+++I+G+C+ GR +EA
Sbjct: 239 ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEA 298

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ +   G  P V+T+NI++  +C  G  M+A++LL  M  KGC P   +FN +I  
Sbjct: 299 IKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINF 358

Query: 190 FLVKNETDRASSFLKK 205
              K    RA   L+K
Sbjct: 359 LCRKRLLGRAIDVLEK 374



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 5/200 (2%)

Query: 6   QRFKGNFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + F  N H+  +  NG  +  ++ ++  I +G   DV   +SLI G C   + ++A  + 
Sbjct: 106 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIM 165

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + +   G   +++TYN LI   + K G       LQ LER     ++  Y+ ++  LC  
Sbjct: 166 EILENSGAVPDVITYNVLI-GGYCKSGEIDKA--LQVLERMSVAPDVVTYNTILRSLCDS 222

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + LD+  ++   P V+TY ILI   C    + +A KLL +M++KGC PD  ++
Sbjct: 223 GKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 282

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +I G   +   D A  FL
Sbjct: 283 NVLINGICKEGRLDEAIKFL 302



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 16/209 (7%)

Query: 7   RFKGNFHVYGIRIN---------GMCKI-------REIDSAIKKGICLDVFVYSSLINGL 50
           +F  N  +YG + N          MC         R +   ++KG    V  ++ LIN L
Sbjct: 300 KFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFL 359

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    L  A+++ +KM   G     ++YNPL+H   +++    A+  L+ +       +I
Sbjct: 360 CRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDI 419

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ ++  LC+ G+ + A + L+QLS KG  P ++TYN +I+GL K G    A +LL +
Sbjct: 420 VTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE 479

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           M+ KG  PD  +++T+++G   + + D A
Sbjct: 480 MRRKGLKPDIITYSTLLRGLGCEGKVDEA 508



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+ R +  AI       K G   +   Y+ L++G C   ++  A+E  + M
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G   ++VTYN L+    +     +A+ +L  L        +  Y+ VIDGL +VG+ 
Sbjct: 411 VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 470

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L+++  KGL P ++TY+ L+ GL  +G + EA K+   M+     P + ++N +
Sbjct: 471 EYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAI 530

Query: 187 IQGFLVKNETDRASSFL 203
           + G     +T RA  FL
Sbjct: 531 MLGLCKAQQTSRAIDFL 547



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + ING+CK   +D AIK        G   +V  ++ ++  +C+
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R  +A  L   M+ +G +  +VT+N LI+    K+    A+ +L+ + +     N   
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLS 386

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C+  + + A + L+ +  +G  P +VTYN L+  LCK G    A ++L Q+ 
Sbjct: 387 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLS 446

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KGC P   ++NTVI G     +T+ A+  L++
Sbjct: 447 SKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE 479



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C+ +++D AI+       +G   D+  Y++L+  LC   +   AVE+ +++ 
Sbjct: 387 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLS 446

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A  LL+ + R   + +I  YS ++ GL   G+ 
Sbjct: 447 SKGCSPVLITYNTVI-DGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKV 505

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    +    + P  VTYN ++ GLCK      A   L  M EKGC P   ++  +
Sbjct: 506 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTIL 565

Query: 187 IQGF 190
           I+G 
Sbjct: 566 IEGI 569



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 98  LQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L+ LER  Y+ +I      + +I G CR G+  +A + ++ L   G VP V+TYN+LI G
Sbjct: 127 LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGG 186

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            CK G   E DK L  ++     PD  ++NT+++      +   A   L + M
Sbjct: 187 YCKSG---EIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQM 236



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +++  NI +  LV     R G  EE  K L+++  +G +P V+    LI G C+ G   +
Sbjct: 106 EEFASNIHLRKLV-----RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRK 160

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A +++  ++  G  PD  ++N +I G+    E D+A   L++
Sbjct: 161 ATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLER 202


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 10/209 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI---------KKGICLDVFVYSSLINGL 50
            D  E R    N   Y   I G+C   E++ AI             C +V  Y+ LI+GL
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGL 243

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C     +  +E  D+M+  G      TY  LIH   +K     A  LL  +     EL++
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +Y+ +IDGLC++G  + AR+    + EKG+ P V TY  LI GLC  G++ EA  L+ +
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQE 363

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           M+ KG  P+S ++ T+I GF   + TD A
Sbjct: 364 MRAKGIVPNSVTYTTLINGFTQADRTDHA 392



 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 105/201 (52%), Gaps = 11/201 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y  +ING+CK  +I  A++       KG   D F Y+ LINGLC   +L+  V L D+M 
Sbjct: 94  YSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQ 153

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           A+G +  +VTY  LIH  +   GR  +AM +L  +E      N   Y+ +I GLC  G  
Sbjct: 154 ARGFSPTVVTYTTLIH-GFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEV 212

Query: 127 EEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           E A   L ++  +G    P VVTY  LI+GLC+KG+     + L +M   GCFP++ ++ 
Sbjct: 213 ERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYT 272

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I G   K     A+  L +
Sbjct: 273 ALIHGLCQKGSFLEAAVLLNE 293



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 2/169 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  YS  INGLC   ++ EA+E+F +M  +G   +  TYN LI+   +       ++L+
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             ++   +   +  Y+ +I G C  GR + A   LD++  +G+ P  VTY  LI GLC  
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 159 GMIMEADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A  +L +MK +G  C P+  ++  +I G   K   +    FL +
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDE 258



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 44/248 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y I ING+CK  +++  +        +G    V  Y++LI+G CT  
Sbjct: 116 EMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAG 175

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEV 112
           R+  A+++ D+M  +GIT   VTY  LI    +      A+ +L+ ++    E   N+  
Sbjct: 176 RVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVT 235

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---------------------------- 144
           Y+ +I GLC+ G +E   + LD++   G  P                             
Sbjct: 236 YTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMV 295

Query: 145 -------VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                  VV YN LI+GLCK G +  A ++ + M EKG  PD  ++ ++IQG       D
Sbjct: 296 AIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLD 355

Query: 198 RASSFLKK 205
            A   +++
Sbjct: 356 EALGLMQE 363



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 3   LTEQRFKGN-----FHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGL 50
           L E + +GN        Y   I+G+C+       +  +D  I  G   +   Y++LI+GL
Sbjct: 219 LKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGL 278

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELN 109
           C      EA  L ++MVA G   ++V YN LI D   K G       +Q L  +K    +
Sbjct: 279 CQKGSFLEAAVLLNEMVAIGCELDVVIYNSLI-DGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I GLC  G  +EA   + ++  KG+VP  VTY  LING  +      A +L+ 
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVN 397

Query: 170 QMKEKGCFP 178
           +MK  G  P
Sbjct: 398 EMKSNGLMP 406



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%)

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           ++G  S++ + +    +  + ++  YS  I+GLC+ G+  EA +   ++ EKG  P   T
Sbjct: 69  RRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFT 128

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YNILINGLCK   +     L+ +M+ +G  P   ++ T+I GF      D A   L +
Sbjct: 129 YNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDE 186



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 7/152 (4%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+C+          ++  +  G  LDV +Y+SLI+GLC    L  A E+ 
Sbjct: 267 NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQ 326

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV +G+  ++ TY  LI    +      A+ L+Q +       N   Y+ +I+G  + 
Sbjct: 327 ILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQA 386

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            R + A + ++++   GL+P    Y IL   L
Sbjct: 387 DRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   I+G CK + I+  +       K G   DV  +++LI G C   R   A ELF  M
Sbjct: 359 VFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNM 418

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G    L T   +I D   K    S A++L + +E+   +LNI +YS+++DG+C  G+
Sbjct: 419 HKYGQVPNLQTC-AVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGK 477

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A +    L  KGL   V TY I+I GLCK+G + +A+ LL+ M+E GC PD+ ++N 
Sbjct: 478 LNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNV 537

Query: 186 VIQGFLVKNETDRASSFL 203
            +QG L K E  R+  +L
Sbjct: 538 FVQGLLTKKEIARSIKYL 555



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 109/215 (50%), Gaps = 17/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + + R+  + + YG+ ING+CK  +  +A++       +    +V VYS++++GLC    
Sbjct: 173 MEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGL 232

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNI 110
           + EA+ L  +M  +G+   LVTY  LI        W++ G     +LL  + +    L++
Sbjct: 233 VSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETG-----SLLDEMIKMGMRLDL 287

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           +  ++++D  C+ G+  +A+  +  +   G  P V TYN LI+  C +  + EA ++   
Sbjct: 288 QTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHL 347

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +GC PD   F ++I G+      ++    L++
Sbjct: 348 MVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEE 382



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 19  INGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+C        +  +D   K    LDV+ Y  LINGLC       AVE   KM  +  
Sbjct: 154 INGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNW 213

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +V Y+  I D   K G  S A+ L   +       N+  Y+ +I GLC  GRW+E  
Sbjct: 214 KPNVVVYST-IMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETG 272

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             LD++ + G+   + T NIL++  CK+G +M+A  ++  M   G  PD  ++N++I  +
Sbjct: 273 SLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY 332

Query: 191 LVKNETDRA 199
            ++N+ + A
Sbjct: 333 CLQNKMNEA 341



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN +C+++ +        +  K G+   V   ++LINGLC    + +AV L D M   
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKM 176

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               ++ TY  LI+   +     +A+  L+ +E   ++ N+ VYS ++DGLC+ G   EA
Sbjct: 177 RYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++S KG+ P +VTY  LI GLC  G   E   LL +M + G   D  + N ++  
Sbjct: 237 LNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDA 296

Query: 190 FLVKNETDRASSFL 203
           F  + +  +A S +
Sbjct: 297 FCKEGKVMQAKSVI 310



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ +K N  VY   ++G+CK   +  A+        KG+  ++  Y+ LI GLC F R
Sbjct: 208 MEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGR 267

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            KE   L D+M+  G+  +L T N L+ D + K+G+   A +++  +       ++  Y+
Sbjct: 268 WKETGSLLDEMIKMGMRLDLQTLNILV-DAFCKEGKVMQAKSVIGFMILTGEGPDVFTYN 326

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C   +  EA +    +  +G +P +V +  LI+G CK   I +   LL +M + 
Sbjct: 327 SLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKM 386

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++ T+I GF
Sbjct: 387 GFVPDVVTWTTLIGGF 402



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ I S++  GI  D    + +IN LC    +     +   M   G+   ++T   LI+ 
Sbjct: 99  VKHIFSSL--GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALING 156

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A+ L+  +E+ +Y L++  Y ++I+GLC+ G    A + L ++ E+   P 
Sbjct: 157 LCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPN 216

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VV Y+ +++GLCK G++ EA  L  +M  KG  P+  ++  +IQG 
Sbjct: 217 VVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGL 262



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 76/136 (55%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+SLI+  C  N++ EA+ +F  MV++G   ++V +  LIH   + +     M LL
Sbjct: 321 DVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLL 380

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + + +  +  ++  ++ +I G C+ GR   A++    + + G VP + T  ++++GLCK 
Sbjct: 381 EEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKG 440

Query: 159 GMIMEADKLLVQMKEK 174
            ++ EA  L   M++ 
Sbjct: 441 NLLSEAVSLAEAMEKS 456



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERD 104
           +++GLC  N L EAV L + M    +   +V Y+ L+ D     G+  +A  L  +L   
Sbjct: 433 ILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILL-DGMCSAGKLNAAWELFSSLPGK 491

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             ++N+  Y+++I GLC+ G  ++A   L  + E G +P   TYN+ + GL  K  I  +
Sbjct: 492 GLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARS 551

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K L  M++KG   D+ +    I  +L  NE D
Sbjct: 552 IKYLTIMRDKGFSVDAATTEITIN-YLSTNEGD 583



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 50  LCTFNRLK---EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL----- 101
           LC   ++K   EA++LF  M +      +  +  L+      +   +A++L++ +     
Sbjct: 48  LCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLG 107

Query: 102 -ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
            E D   LNI     VI+ LCR+         L  + + GL P V+T   LINGLC +G 
Sbjct: 108 IEADTITLNI-----VINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGN 162

Query: 161 IMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +A  L+  M EK  +P D  ++  +I G     +T  A  +L+K
Sbjct: 163 VAQAVGLVDHM-EKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRK 207



 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y I ++GMC   ++++A +       KG+ ++V+ Y+ +I GLC    L +A +L 
Sbjct: 461 NIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLL 520

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
             M   G   +  TYN  +     K+    ++  L T+ RDK
Sbjct: 521 INMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYL-TIMRDK 561


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ F+ +   Y   I+G+CK  ++  A++       KG+  DV  Y+ +++ LC   +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA ELF KM+ +G +A  V YN LI+   + +    A  LL+ +    YE +   Y+ 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL--VQMKE 173
           ++ GLCR+G+  EA++  D +  +G  P VV YN L++ L K+G + EA  L   + M +
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +   PD  ++NT+I GF    +TD A    K
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFK 211



 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            D+ +++   +   Y   I+G C++ + D A+K       KG   D   Y+S++ GL   
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 235

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           + + EA E+F KMV  G      TY+ ++  +         + L + +   ++  ++ + 
Sbjct: 236 SNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLC 295

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VID LC+  + ++A K L+++S+ G VP VVTYNIL++GLCK  ++ +A +L   M +
Sbjct: 296 NAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 355

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC PD  S++ V+ G    N+   A
Sbjct: 356 NGCAPDIVSYSVVLNGLCKTNKVHDA 381



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+RF  +  +    I+ +CK +++D A        K G   DV  Y+ L++GLC  N
Sbjct: 282 EMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTN 341

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A ELF  MV  G   ++V+Y+ +++   +      A  L   +   K   ++  ++
Sbjct: 342 LVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFN 401

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGLC+ G+ +EA+  LD +SE  ++P  VT   L++GLC+     EA +L   M EK
Sbjct: 402 ILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEK 461

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G   D    N V+ G   + +  +A  F K
Sbjct: 462 GTVADVLPHNIVLAGLCREGKLAQALLFFK 491



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + +NG+CK  ++       D  I++ +  DV  ++ L++GLC   +L EA +L D M 
Sbjct: 365 YSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMS 424

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +  + VT   L+H     +    A+ L Q +       ++  +++V+ GLCR G+  
Sbjct: 425 EHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLA 484

Query: 128 EARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +A      +  S+    P VVTY  L+N L + G + +A     QM   GC PD  ++NT
Sbjct: 485 QALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNT 544

Query: 186 VIQGFLVKN---ETDRASSFLKK 205
           ++ G   +    + DR +  +K+
Sbjct: 545 LMNGLRKQGRHIQADRLTQAMKE 567



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 46/248 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y   ING+CK   I+ A K       KG   D   Y+++++GLC   +
Sbjct: 71  MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGK 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD--KYELNIEV 112
           + EA + FD M ++G + ++V YN L+ D   K+G+ + A  L +T++    K   ++  
Sbjct: 131 VSEAKQFFDSMPSRGYSPDVVAYNGLL-DALYKEGKVAEAWGLFKTMDMADRKVAPDLIT 189

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN----------------------- 149
           Y+ +IDG CRV + +EA K    +  KG +P  VTYN                       
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 150 ------------ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                       I+++G C+ G +    +L  +M EK   PD    N VI       + D
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVD 309

Query: 198 RASSFLKK 205
            A   L++
Sbjct: 310 DAHKVLEE 317



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 12/190 (6%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD + E++   +   + I ++G+CK  ++D A        +  +  D    ++L++GLC 
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCR 444

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             R  EAV LF  MV +G  A+++ +N ++     ++G+ + A+   +++ +   E + +
Sbjct: 445 DKRTDEAVRLFQYMVEKGTVADVLPHN-IVLAGLCREGKLAQALLFFKSMVKSDGEFSPD 503

Query: 112 V--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           V  Y+ +++ L   GR ++A     Q++  G  P  V YN L+NGL K+G  ++AD+L  
Sbjct: 504 VVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQ 563

Query: 170 QMKEKGCFPD 179
            MKEKG   D
Sbjct: 564 AMKEKGFLSD 573



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 64/100 (64%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +E ++  YS +I GLC+ G+  EA + +++++EKG+ P V TY I+++ LC+ G + EAD
Sbjct: 6   FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +L  +M E+GC  ++ ++N +I G       +RA   L++
Sbjct: 66  ELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 105



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++EKG  P VVTY+ +I+GLCK G + EA +++ +M EKG  PD  ++  ++       +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 196 TDRASSFLKK 205
            D A     K
Sbjct: 61  VDEADELFHK 70


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EID+A+    +  +  DV  Y++++  LC   +LK+A+E+ D+ + +
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 188

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               +++TY  LI    ++ G   AM LL  +     + ++  Y+++I+G+C+ GR +EA
Sbjct: 189 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 248

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ +   G  P V+T+NI++  +C  G  M+A+KLL  M  KGC P   +FN +I  
Sbjct: 249 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 308

Query: 190 FLVKNETDRASSFLKK 205
              +    RA   L+K
Sbjct: 309 LCRQGLLGRAIDILEK 324



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   +  AI         G   +   Y+ L++G C   ++  A+E  D M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G   ++VTYN L+     K G+   A+ +L  L        +  Y+ VIDGL +VG+
Sbjct: 361 VSRGCYPDIVTYNTLL-TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 419

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A K LD++  KGL P ++TY+ L++GL ++G + EA K    ++  G  P++ ++N+
Sbjct: 420 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 479

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G     +TDRA  FL
Sbjct: 480 IMLGLCKSRQTDRAIDFL 497



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++S + +G   D+   +SLI G C   + K+A  + + +   G   +++TYN LI   + 
Sbjct: 80  LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI-SGYC 138

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K G       LQ L+R     ++  Y+ ++  LC  G+ ++A + LD+  +K   P V+T
Sbjct: 139 KSGEIDNA--LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVIT 196

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           Y ILI   CK+  + +A KLL +M+ KG  PD  ++N +I G   +   D A  FL
Sbjct: 197 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK +++D AI+       +G   D+  Y++L+  LC   ++  AVE+ +++ 
Sbjct: 337 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 396

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  + R   + +I  YS ++ GL R G+ 
Sbjct: 397 SKGCSPVLITYNTVI-DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 455

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    L   G+ P  +TYN ++ GLCK      A   L  M  K C P   ++  +
Sbjct: 456 DEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTIL 515

Query: 187 IQGF 190
           I+G 
Sbjct: 516 IEGI 519



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G CR+G+ ++A   ++ L + G VP V+TYN+LI+G CK G I  A ++L +M    
Sbjct: 98  LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN--- 154

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             PD  ++NT+++      +  +A   L + +
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R G  E+  K L+ +  +G +P ++    LI G C+ G   +A  ++  +++ G  PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +I G+    E D A   L +
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDR 152


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E R K +  +Y   I+G CK   +++A+       + G+  D   Y+SL+ GLC   R
Sbjct: 165 MEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGR 224

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
             +A  L   MV + I   ++T+  LI + + ++G+F  A    + + R   + ++  Y+
Sbjct: 225 RSDAARLMRDMVMRDIVPNVITFTALI-NAFVREGKFLEAKKFYEEMIRRCIDPDVFTYN 283

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC  G+ +EA++ LD +  KG  P VVTYN LING CK   + E  KL+ +M ++
Sbjct: 284 SMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQR 343

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   D+ +FNT+IQG+      D A     +
Sbjct: 344 GLVVDTVTFNTIIQGYFQAGRPDAAQEIFSR 374



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I IN +C+       +  +   +K G   DV   SSLING C  NR+  AV+L 
Sbjct: 103 DLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLV 162

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC- 121
            KM       ++V YN +I D + K G   +A+ L   +ERD    +   Y+ ++ GLC 
Sbjct: 163 SKMEEMRCKLDVVIYNTII-DGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCC 221

Query: 122 ----------------------------------RVGRWEEARKKLDQLSEKGLVPGVVT 147
                                             R G++ EA+K  +++  + + P V T
Sbjct: 222 SGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFT 281

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN +I+GLC  G + EA ++L  M  KGCFPD  ++NT+I GF      D  +  +++
Sbjct: 282 YNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVRE 339



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 39/203 (19%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C   ++D A       + KG   DV  Y++LING C   R+ E  +L  +M 
Sbjct: 282 YNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMS 341

Query: 68  AQGITAELVTYNPLIHDNWEK------QGRFS--------------------------AM 95
            +G+  + VT+N +I   ++       Q  FS                          A+
Sbjct: 342 QRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKAL 401

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L +++++ + EL+I  Y++VI G+C +G  E+A      LS KGL P VVTY  +I+G 
Sbjct: 402 VLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGF 461

Query: 156 CKKGMIMEADKLLVQMKEKGCFP 178
           C+K +  +AD L  +M+E G  P
Sbjct: 462 CRKRLWDKADFLYRKMQEDGLLP 484



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 33/211 (15%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD---- 84
           +  I++ I  DVF Y+S+I+GLC   ++ EA ++ D MV +G   ++VTYN LI+     
Sbjct: 268 EEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKT 327

Query: 85  -------------------------NWEKQGRFSAM---ALLQTLERDKYELNIEVYSLV 116
                                    N   QG F A    A  +   R     NI  YS++
Sbjct: 328 KRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSIL 387

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + GLC   R E+A    + + +  +   + TYNI+I+G+C  G + +A  L   +  KG 
Sbjct: 388 LYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGL 447

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            PD  ++ T+I GF  K   D+A  FL + M
Sbjct: 448 EPDVVTYTTMISGFCRKRLWDKA-DFLYRKM 477



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ Y+ +IN LC  +R   A+ +  KM+  G   ++VT + LI+   +    F A
Sbjct: 99  GIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGA 158

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +E  + +L++ +Y+ +IDG C+ G    A     ++   G+    VTYN L+ G
Sbjct: 159 VDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTG 218

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC  G   +A +L+  M  +   P+  +F  +I  F+ + +   A  F ++
Sbjct: 219 LCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEE 269



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA++LF  M+       +V ++ L+ +  + +     ++L   +E      ++  Y++
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+ LCR  R+  A   + ++ + G  P VVT + LING C+   +  A  L+ +M+E  
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 176 CFPDSTSFNTVIQGF 190
           C  D   +NT+I GF
Sbjct: 170 CKLDVVIYNTIIDGF 184


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EID+A+    +  +  DV  Y++++  LC   +LK+A+E+ D+ + +
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 245

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               +++TY  LI    ++ G   AM LL  +     + ++  Y+++I+G+C+ GR +EA
Sbjct: 246 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 305

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ +   G  P V+T+NI++  +C  G  M+A+KLL  M  KGC P   +FN +I  
Sbjct: 306 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 365

Query: 190 FLVKNETDRASSFLKK 205
              +    RA   L+K
Sbjct: 366 LCRQGLLGRAIDILEK 381



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   +  AI         G   +   Y+ L++G C   ++  A+E  D M
Sbjct: 358 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 417

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G   ++VTYN L+     K G+   A+ +L  L        +  Y+ VIDGL +VG+
Sbjct: 418 VSRGCYPDIVTYNTLL-TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 476

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A K LD++  KGL P ++TY+ L++GL ++G + EA K    ++  G  P++ ++N+
Sbjct: 477 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 536

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G     +TDRA  FL
Sbjct: 537 IMLGLCKSRQTDRAIDFL 554



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK +++D AI+       +G   D+  Y++L+  LC   ++  AVE+ +++ 
Sbjct: 394 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 453

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  + R   + +I  YS ++ GL R G+ 
Sbjct: 454 SKGCSPVLITYNTVI-DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 512

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    L   G+ P  +TYN ++ GLCK      A   L  M  K C P   ++  +
Sbjct: 513 DEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTIL 572

Query: 187 IQGF 190
           I+G 
Sbjct: 573 IEGI 576



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++S + +G   D+   +SLI G C   + K+A  + + +   G   +++TYN LI   + 
Sbjct: 137 LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI-SGYC 195

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K G       LQ L+R     ++  Y+ ++  LC  G+ ++A + LD+  +K   P V+T
Sbjct: 196 KSGEIDNA--LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVIT 253

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           Y ILI   CK+  + +A KLL +M+ KG  PD  ++N +I G   +   D A  FL
Sbjct: 254 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G CR+G+ ++A   ++ L + G VP V+TYN+LI+G CK G I  A ++L +M    
Sbjct: 155 LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN--- 211

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             PD  ++NT+++      +  +A   L + +
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R G  E+  K L+ +  +G +P ++    LI G C+ G   +A  ++  +++ G  PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +I G+    E D A   L +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDR 209


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 106/178 (59%), Gaps = 2/178 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++K    DV  Y+ LI   C  + + +A++L D+M ++G   ++VTYN L+ +   
Sbjct: 4   LDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLV-NGMC 62

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K+GR   A+  L ++     + N+  +++++  +C  GRW +A K L ++  KG  P VV
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           T+NILIN LC+KG++  A  +L +M   GC P+S S+N ++ GF  + + DRA  +L+
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y + +NGMCK   +D AIK        G   +V  ++ ++  +C+  R  +A +
Sbjct: 48  KPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEK 107

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +MV +G +  +VT+N LI+    K     A+ +L+ +       N   Y+ ++ G C
Sbjct: 108 LLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFC 167

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  + + A + L+ +  +G  P +VTYN ++  LCK G +  A +LL Q+  KGC P   
Sbjct: 168 KEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLI 227

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++NTVI G     +TD+A   L +
Sbjct: 228 TYNTVIDGLSKVGKTDQAVELLHE 251



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I +  MC   R +D+       ++KG    V  ++ LIN LC    L  A+++ 
Sbjct: 85  NVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDIL 144

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM   G T   ++YNPL+H   +++    A+  L+ +       +I  Y+ ++  LC+ 
Sbjct: 145 EKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKD 204

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A + L+QLS KG  P ++TYN +I+GL K G   +A +LL +M+ KG  PD  ++
Sbjct: 205 GKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITY 264

Query: 184 NTVIQGFLVKNETDRASSFL 203
           +++I G   + + + A  F 
Sbjct: 265 SSLIAGLSREGKVEEAIKFF 284



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           LTE   KG   +   + I IN +C+   +  AI         G   +   Y+ L++G C 
Sbjct: 109 LTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCK 168

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  A++  + MV++G   ++VTYN ++    +     +A+ LL  L        +  
Sbjct: 169 EKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLIT 228

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ VIDGL +VG+ ++A + L ++  KGL P V+TY+ LI GL ++G + EA K    ++
Sbjct: 229 YNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVE 288

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             G  P++ ++N+++ G     +TDRA  FL
Sbjct: 289 GFGVKPNAFTYNSIMFGLCKAQQTDRAIDFL 319



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK +++D AI+       +G   D+  Y++++  LC   ++  AVEL +++ 
Sbjct: 159 YNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLS 218

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  +     + ++  YS +I GL R G+ 
Sbjct: 219 SKGCSPVLITYNTVI-DGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA K    +   G+ P   TYN ++ GLCK      A   L  M  KGC P   S+  +
Sbjct: 278 EEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTIL 337

Query: 187 IQGF 190
           I+G 
Sbjct: 338 IEGI 341



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 80/146 (54%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +E+ D+ + +    +++TY  LI     + G   AM LL  +     + ++  Y+++++G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C+ GR +EA K L+ +   G  P V+T+NI++  +C  G  M+A+KLL +M  KGC P 
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             +FN +I     K    RA   L+K
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEK 146



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 94/182 (51%), Gaps = 9/182 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +CK  ++D+A++       KG    +  Y+++I+GL    +  +AVEL  +M 
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+  +++TY+ LI     ++G+   A+     +E    + N   Y+ ++ GLC+  + 
Sbjct: 254 GKGLKPDVITYSSLIA-GLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQT 312

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L  +  KG  P  V+Y ILI G+  +G+  EA +LL ++  +G    S++   V
Sbjct: 313 DRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVV 372

Query: 187 IQ 188
           ++
Sbjct: 373 VR 374


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
             Y   I+G CK  EID A         + G   D F YS LINGLC  + L++A EL  
Sbjct: 157 QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQ 216

Query: 65  KMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +M+  +   A +V +N L+    + Q    A  LL ++       ++  YS +IDGLCR 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++    L+++  +G  P VVTY +L+ GLCK G ++EA +L+ +M E GC P++ ++
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTY 336

Query: 184 NTVIQGFLVKNETDRASSFL 203
           + V  G    ++ D A+  L
Sbjct: 337 SLVFDGLCKIDKLDMANDLL 356



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 14  VYGIRINGMCK---IREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y I ING+CK   +R+ D  +     +K  C  V  +++L++G C    L  A EL   
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS 253

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+  G   ++VTY+ +I D   + G      ALL+ +     + ++  Y++++ GLC+ G
Sbjct: 254 MLEHGCAPDVVTYSTII-DGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  EA + + ++ E G  P  VTY+++ +GLCK   +  A+ LL  +++KG   D  +F 
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFE 372

Query: 185 TVIQGFLVKNETDRAS 200
            ++   + K   DRA+
Sbjct: 373 ALLLS-VKKRLLDRAA 387



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 4/169 (2%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMA 96
            D + Y  L+   C    L+ A++L  +M  Q G+      YN  +H   +      AM 
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAME 75

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ ++    + ++  ++ +I GLC+ GR +EA++ LD++   G    +VTYN LINGL 
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   EA   ++ M+     PD+ ++N +I GF    E DRA  FL++
Sbjct: 136 SAGRSGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEE 181



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 13  HVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y + +   C   E+ +A+        + G+     +Y+  ++ LC   ++ EA+E+  
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVK 78

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            M       ++VT+N LI     K GR   A  +L  +ER  +  N+  Y+ +I+GL   
Sbjct: 79  NMKDGACKPDVVTFNTLIA-GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSA 137

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTS 182
           GR  EA   +  ++     P   TYN +I+G CK G I  A   L +MK++ GC PD+ +
Sbjct: 138 GRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFT 194

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++ +I G    +   +A   L++
Sbjct: 195 YSILINGLCKSSNLRKADELLQE 217


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 10/198 (5%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            YG  +NG+CKI  +D+A      I K    ++ ++++LI+G  T  RL +A  +   MV
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIPKP---EIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI  ++ TYN LI+  W++     A+ +L  +     + N+  Y++++DG C++G+ 
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA   L+++S  GL P  V +N LI+  CK+  I EA ++  +M  KGC PD  +FN++
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 187 IQGFLVKNETDRASSFLK 204
           I G    +E   A   L+
Sbjct: 501 ISGLCEVDEIKHALWLLR 518



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++    K N   +   I+  CK   I  A+       +KG   DV+ ++SLI+GLC  +
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K A+ L   M+++G+ A  VTYN LI+    +     A  L+  +      L+   Y+
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLCR G  ++AR   +++   G  P  ++ NILINGLC+ GM+ EA +   +M  +
Sbjct: 569 SLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  +FN++I G 
Sbjct: 629 GSTPDIVTFNSLINGL 644



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + + +   I+G+C++ EI  A       I +G+  +   Y++LIN       +KEA +
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++MV QG   + +TYN LI           A +L + + RD +  +    +++I+GLC
Sbjct: 551 LVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G  EEA +   ++  +G  P +VT+N LINGLC+ G I +   +  +++ +G  PD+ 
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 182 SFNTVIQ 188
           +FNT++ 
Sbjct: 671 TFNTLMS 677



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +  K N + Y I ++G CK+ +ID A          G+  +   ++ LI+  C  +
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EAVE+F +M  +G   ++ T+N LI    E      A+ LL+ +  +    N   Y+
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+   R G  +EARK ++++  +G     +TYN LI GLC+ G + +A  L  +M   
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + S N +I G       + A  F K+
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKE 624



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 49/249 (19%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           +D+  ++       +G+ +   C + EIDSA+       K G   +  +Y +LI+ L   
Sbjct: 206 YDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYEL 108
           NR+ EA++L ++M   G   +  T+N +I      D   +  +     L++    D    
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDI-- 323

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKL--------------------------------DQL 136
               Y  +++GLC++GR + A+                                   D +
Sbjct: 324 ---TYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +  G+VP V TYN LI G  K+G++  A ++L  M+ KGC P+  S+  ++ GF    + 
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 197 DRASSFLKK 205
           D A + L +
Sbjct: 441 DEAYNVLNE 449



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+CK   I+ A K       +G   D   Y  L+NGLC   R+  A +LF ++     
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK--- 350

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEA 129
             E+V +N LIH  +   GR      + +     Y +  +V  Y+ +I G  + G    A
Sbjct: 351 -PEIVIFNTLIH-GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  +  KG  P V +Y IL++G CK G I EA  +L +M   G  P++  FN +I  
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468

Query: 190 FLVKNETDRASSFLKK 205
           F  ++    A    ++
Sbjct: 469 FCKEHRIPEAVEIFRE 484



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ ++  L + N  K A  +F  M+++ I   L T+  ++          SA++LL+ + 
Sbjct: 185 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT 244

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +     N  +Y  +I  L +  R  EA + L+++   G VP   T+N +I GLCK   I 
Sbjct: 245 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA K++ +M  +G  PD  ++  ++ G       D A     +
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           VY  LI  L      K    L  +M  +GI  +   +  ++ D ++K G       L   
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRD-YDKAGFPGQTTRLMLE 171

Query: 102 ERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            R+ Y  E   + Y++V++ L      + A      +  + + P + T+ +++   C   
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN 231

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            I  A  LL  M + GC P+S  + T+I      N  + A   L++
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
             Y   I+G CK  EID A         + G   D F YS LINGLC  + L++A EL  
Sbjct: 157 QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQ 216

Query: 65  KMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +M+  +   A +V +N L+    + Q    A  LL ++       ++  YS +IDGLCR 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++    L+++  +G  P VVTY +L+ GLCK G ++EA +L+ +M E GC P++ ++
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTY 336

Query: 184 NTVIQGFLVKNETDRASSFL 203
           + V  G    ++ D A+  L
Sbjct: 337 SLVFDGLCKIDKLDMANDLL 356



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 14  VYGIRINGMCK---IREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y I ING+CK   +R+ D  +     +K  C  V  +++L++G C    L  A EL   
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS 253

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+  G   ++VTY+ +I D   + G      ALL+ +     + ++  Y++++ GLC+ G
Sbjct: 254 MLEHGCAPDVVTYSTII-DGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  EA + + ++ E G  P  VTY+++ +GLCK   +  A+ LL  +++KG   D  +F 
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFE 372

Query: 185 TVIQGFLVKNETDRAS 200
           T++   + K   DRA+
Sbjct: 373 TLLLS-VKKRLLDRAA 387



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 4/169 (2%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMA 96
            D + Y  L+   C    L+ A++L  +M  Q G+      YN  +H   +      AM 
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAME 75

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ ++    + ++  ++ +I GLC+ GR +EA++ LD++   G    +VTYN LINGL 
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   EA   ++ M+     PD+ ++N +I GF    E DRA  FL++
Sbjct: 136 SAGRSGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEE 181



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 13  HVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y + +   C   E+ +A+        + G+     +Y+  ++ LC   ++ EA+E+  
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVK 78

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            M       ++VT+N LI     K GR   A  +L  +ER  +  N+  Y+ +I+GL   
Sbjct: 79  NMKDGACKPDVVTFNTLIA-GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSA 137

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTS 182
           GR  EA   +  ++     P   TYN +I+G CK G I  A   L +MK++ GC PD+ +
Sbjct: 138 GRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFT 194

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++ +I G    +   +A   L++
Sbjct: 195 YSILINGLCKSSNLRKADELLQE 217


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+    +  N   Y   +NG+CK  +       I+S + KG+  DV  YS L++  C  +
Sbjct: 248 DMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 307

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWE--------------------------- 87
           R+ EA+EL   M ++G T  +VT+N +I    +                           
Sbjct: 308 RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFN 367

Query: 88  -------KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                  K G F  A AL + +     + ++  +  +IDGLC+ G+ E AR  LD +   
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VVTYN+L++GLCK G I E  + L +M   GC P+S ++ +++      + TD A
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487

Query: 200 SSFLKK 205
              + K
Sbjct: 488 LQLVSK 493



 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 14/198 (7%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y I +  +C+  E   A+        + G+   +  Y+++INGLC  N L   +ELF+++
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G   ++VTYN LI D+  K G    A  L   +       N+  YS++I+GLC+VGR
Sbjct: 108 VKRGHHPDVVTYNTLI-DSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR 166

Query: 126 WEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDST 181
            +EAR+ + +++ K   ++P ++TYN  ++GLCK+ M  EA +L+  +++      PD+ 
Sbjct: 167 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 226

Query: 182 SFNTVIQGFLVKNETDRA 199
           +F+T+I G     +TD A
Sbjct: 227 TFSTLIDGLCKCGQTDEA 244



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 3/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELF-DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y+ ++  LC       A+E+F  +M   G+   +VTYN +I+   +     + M L + L
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  +  ++  Y+ +ID LC+ G  EEAR+    +S +G VP VVTY++LINGLCK G I
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 162 MEADKLLVQMKEKGC--FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA +L+ +M  K C   P+  ++N+ + G   ++ T  A   ++ 
Sbjct: 168 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 13/200 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGIC---LDVFVYSSLINGLCTFNRLKEAVE 61
           N   Y + ING+CK+  ID A      + +  C    ++  Y+S ++GLC  +   EA E
Sbjct: 150 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 209

Query: 62  LFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           L   +      ++ + VT++ LI D   K G+ +  A    +    Y  N+  Y+ +++G
Sbjct: 210 LMRSLRDGSLRVSPDTVTFSTLI-DGLCKCGQ-TDEACNDDMIAGGYVPNVVTYNALVNG 267

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+  + E A   ++ + +KG+ P V+TY++L++  CK   + EA +LL  M  +GC P+
Sbjct: 268 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 327

Query: 180 STSFNTVIQGFLVKNETDRA 199
             +FN++I G    + +  A
Sbjct: 328 VVTFNSIIDGLCKSDRSGEA 347



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 15/210 (7%)

Query: 11  NFHVYGIRINGMCKIR------EIDSAIKKG---ICLDVFVYSSLINGLCTFNRLKEAVE 61
           N   Y   ++G+CK        E+  +++ G   +  D   +S+LI+GLC   +  EA  
Sbjct: 187 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 246

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             D M+A G    +VTYN L++   +      A A+++++       ++  YS+++D  C
Sbjct: 247 --DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 304

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R +EA + L  ++ +G  P VVT+N +I+GLCK     EA ++ +Q+  +   PD  
Sbjct: 305 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKV 364

Query: 182 SFNTVIQGFLVKNETDRASSFLK----KNM 207
           +FN +I G       ++AS+  +    KNM
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNM 394



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 100/193 (51%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +  + +   +G  I+G+CK  ++++A          G+  +V  Y+ L++GLC   
Sbjct: 388 EMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSG 447

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++E  E  ++MV+ G   E +TY  L++          A+ L+  L+   ++ +   Y+
Sbjct: 448 RIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYN 507

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGL + G+ E+A   L+++  KG  P   T+     GL + G +    +LL  +  K
Sbjct: 508 ILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAK 567

Query: 175 GCFPDSTSFNTVI 187
           G  PD+T+ ++++
Sbjct: 568 GMLPDATTCSSIL 580



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---------------- 51
           Y + ++  CK   +D A++       +G   +V  ++S+I+GLC                
Sbjct: 296 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVY 355

Query: 52  ---------TFNRL----------KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
                    TFN L          ++A  LF++MVA+ +  +++T+  LI D   K G+ 
Sbjct: 356 NRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI-DGLCKAGQV 414

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A  +L  +       N+  Y++++ GLC+ GR EE  + L+++   G VP  +TY  L
Sbjct: 415 EAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSL 474

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  LC+     +A +L+ ++K  G  PD+ ++N ++ G     +T++A + L++
Sbjct: 475 VYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEE 528



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I I G CK    + A       + K +  DV  + +LI+GLC   +++ A ++ D M 
Sbjct: 366 FNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMG 425

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G+   +VTYN L+H    K GR       L+ +           Y  ++  LCR  R 
Sbjct: 426 NLGVPPNVVTYNVLVH-GLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + + +L   G  P  VTYNIL++GL K G   +A  +L +M  KG  PDS +F   
Sbjct: 485 DDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 544

Query: 187 IQGF 190
             G 
Sbjct: 545 FGGL 548


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 110/181 (60%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CK++ +D  +K       +G+  +   YS L+ G C   +L+ A ELF +MV+ G+
Sbjct: 352 IKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGV 411

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TY  L+ D     G+   A+ + + L++ K  L+I +Y+++I+G+C+ G+ E+A 
Sbjct: 412 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAW 470

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                L  KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G  P+  ++NT+I+  
Sbjct: 471 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAH 530

Query: 191 L 191
           L
Sbjct: 531 L 531



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ +   +   ING+C   ++  A+       + G   +V  Y+S++NG+C       A+
Sbjct: 131 YEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLAL 190

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           +L  KM  + + A++ TY+ +I D+  + G   +A++L + +E    + ++  Y+ ++ G
Sbjct: 191 DLLRKMDERNVKADVFTYSTII-DSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGG 249

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G+W +  + L  ++ + ++P V+T+N+LI+   K+G + EA++L  +M  KG  P+
Sbjct: 250 LCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPN 309

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
           + ++N+++ G+ ++N    A++ L
Sbjct: 310 TITYNSLMDGYCMQNRLSEANNML 333



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E   + N   Y   +NG+CK  +   A+       ++ +  DVF YS++I+ LC    
Sbjct: 161 MVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGC 220

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +  A+ LF +M  +GI + LVTYN L+     K G+++  + LL+ +   K   N+  ++
Sbjct: 221 IDAAISLFKEMETKGIKSSLVTYNSLVG-GLCKAGKWNDGVQLLKDMTSRKIIPNVITFN 279

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   + G+ +EA +   ++  KG+ P  +TYN L++G C +  + EA+ +L  M   
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRN 339

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C PD  +F ++I+G+      D      +K
Sbjct: 340 NCSPDIVTFTSLIKGYCKVKRVDEGMKLFRK 370



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y   I+ +C+   ID+AI        KGI   +  Y+SL+ GLC    
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TFN          +L+EA EL+ +M+ +GI+   +TYN 
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D +  Q R S A  +L  + R+    +I  ++ +I G C+V R +E  K   ++S++
Sbjct: 316 LM-DGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKR 374

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTY+IL+ G C+ G +  A++L  +M   G  PD  ++  ++ G     + ++A
Sbjct: 375 GLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKA 434



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+  +       +   +K G   D   +++LINGLC  +++ EAV L 
Sbjct: 99  NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MV  G    +VTYN +++   +      A+ LL+ ++    + ++  YS +ID LCR 
Sbjct: 159 ARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRD 218

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A     ++  KG+   +VTYN L+ GLCK G   +  +LL  M  +   P+  +F
Sbjct: 219 GCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITF 278

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I  F+ + +   A+   K+
Sbjct: 279 NVLIDVFVKEGKLQEANELYKE 300



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+T ++   N   + + I+   K  ++  A       I KGI  +   Y+SL++G C  N
Sbjct: 265 DMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQN 324

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA  + D MV    + ++VT+  LI    + +     M L + + +     N   YS
Sbjct: 325 RLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYS 384

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++ G C+ G+ E A +   ++   G++P V+TY IL++GLC  G + +A ++   +++ 
Sbjct: 385 ILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 444

Query: 175 GCFPDSTSFNTVIQGF 190
               D   +  +I+G 
Sbjct: 445 KMNLDIVMYTIIIEGM 460



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++++    N   Y I + G C+  +++ A       +  G+  DV  Y  L++GLC   +
Sbjct: 371 ISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGK 430

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A+E+F+ +    +  ++V Y  +I    +      A  L  +L     + N+  Y++
Sbjct: 431 LEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 490

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ G   EA   L ++ E G  P   TYN LI    + G +  + KL+ +MK  G
Sbjct: 491 MISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 550

Query: 176 CFPDSTSFNTVI 187
              D++S   VI
Sbjct: 551 FSADASSIKMVI 562



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI ++G+C   +++ A+       K  + LD+ +Y+ +I G+C   ++++A  LF  +
Sbjct: 417 TYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSL 476

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   ++TY  +I    +K     A  LL+ +E D  E N   Y+ +I    R G  
Sbjct: 477 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDL 536

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL 155
             + K ++++   G      +  ++I+ L
Sbjct: 537 TASAKLIEEMKSCGFSADASSIKMVIDML 565



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL + +   +  +Y I I GMCK  +++ A         KG+  +V  Y+ +I+GLC   
Sbjct: 440 DLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 499

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA  L  KM   G      TYN LI  +       ++  L++ ++   +  +     
Sbjct: 500 SLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 559

Query: 115 LVIDGLCRVGRW-EEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +VID L     W +E R+       +G    ++ +N +   L
Sbjct: 560 MVIDMLSSAVWWFKEPRRSPGVKRFRGTQAYLMPFNTITASL 601



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 51/106 (48%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L Q + R +   ++  +S    G+    ++        ++   G+   + T NI+IN
Sbjct: 49  AIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMIN 108

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             C+      A  +L ++ + G  PD+T+FNT+I G  ++++   A
Sbjct: 109 CFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEA 154


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 18/202 (8%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I IN +CKI+ ++ A+       +K +  +   Y+SLI+GLC   R+  A +L D+M 
Sbjct: 338 YNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMH 397

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALL-----QTLERDKYELNIEVYSLVIDGLC 121
            +G  A ++TYN LI +   K G+   A+AL+     Q ++ D Y LNI ++ L    LC
Sbjct: 398 DRGHHANVITYNSLI-NGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGL----LC 452

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R + A+     L +KG  P V TYNI+I G CK+G++ EA  L  +M++ GC P++ 
Sbjct: 453 KGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAI 512

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           +F  +I   L K ETD+A   L
Sbjct: 513 TFKIIICALLEKGETDKAEKLL 534



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 71/273 (26%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------------------------- 33
           L  Q F+ +   YG  ING+CKI E  +AI+                             
Sbjct: 159 LLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKL 218

Query: 34  -------------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
                        KGI  +V  YS++I+G C   +L EA+   ++MV + I  ++  YN 
Sbjct: 219 VSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNT 278

Query: 81  LIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG-------------------- 119
           L+ D   K+G+   A  +L  + +   + N+  Y+ +IDG                    
Sbjct: 279 LV-DALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWS 337

Query: 120 -------LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
                  LC++ R EEA     ++ +K +VP  VTYN LI+GLCK G I  A  L+ +M 
Sbjct: 338 YNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMH 397

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++G   +  ++N++I G     + D+A + + K
Sbjct: 398 DRGHHANVITYNSLINGLCKNGQLDKAIALINK 430



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 4/200 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            K N   Y   I+G  K    ++    G+  DV+ Y+ +IN LC   R++EA+ L+ +M 
Sbjct: 304 LKPNVITYNTLIDGYAK-HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMH 362

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + +    VTYN LI D   K GR S A  L+  +    +  N+  Y+ +I+GLC+ G+ 
Sbjct: 363 QKNMVPNTVTYNSLI-DGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQL 421

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++A   ++++ ++G+ P + T NIL++GL CK   +  A  L   + +KG  P+  ++N 
Sbjct: 422 DKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNI 481

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G   +   D A +   K
Sbjct: 482 IIYGHCKEGLLDEAYALQSK 501



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   I+G+CK   I       D    +G   +V  Y+SLINGLC   
Sbjct: 360 EMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNG 419

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +L +A+ L +KM  QGI  ++ T N L+H    K  R  +A  L Q L    Y  N+  Y
Sbjct: 420 QLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTY 479

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C+ G  +EA     ++ + G  P  +T+ I+I  L +KG   +A+KLL +M  
Sbjct: 480 NIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIA 539

Query: 174 KG 175
           +G
Sbjct: 540 RG 541



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 40/231 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +    N   Y   I+G C + ++  A       + K I  DV++Y++L++ L    
Sbjct: 228 EMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEG 287

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-- 112
           ++KEA  +   +V   +   ++TYN LI D + K   F+A+ L+  +  D +  NI +  
Sbjct: 288 KVKEAKNVLAVIVKTCLKPNVITYNTLI-DGYAKH-VFNAVGLM-GVTPDVWSYNIMINR 344

Query: 113 ----------------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                                       Y+ +IDGLC+ GR   A   +D++ ++G    
Sbjct: 345 LCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHAN 404

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           V+TYN LINGLCK G + +A  L+ +MK++G  PD  + N ++ G L K +
Sbjct: 405 VITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGK 455



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  + +F    I IN  C + +I+ A       +K G   D    ++LI GLC   ++K+
Sbjct: 92  KAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKK 151

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+   DK++AQG   + V+Y  LI+   +     +A+ LL+ ++    E N+ +Y+ +ID
Sbjct: 152 ALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIID 211

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+     EA     ++S KG+   VVTY+ +I+G C  G + EA   L +M  K   P
Sbjct: 212 CLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINP 271

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           D   +NT++     + +   A + L
Sbjct: 272 DVYIYNTLVDALHKEGKVKEAKNVL 296



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNI 110
           +F  + +A+  F +M+    T  ++ +N ++ D++ K   + + ++L + LE    + + 
Sbjct: 40  SFENVDDALFQFHRMLCMRHTPPIIQFNKIL-DSFAKMKHYPTVVSLSRRLELKAIQPDF 98

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DK 166
              +++I+  C +G+   A   L ++ + G  P  VT   LI GLC KG + +A    DK
Sbjct: 99  FTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDK 158

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL Q    G   D  S+ T+I G     ET  A   L++
Sbjct: 159 LLAQ----GFRLDQVSYGTLINGVCKIGETRAAIQLLRR 193


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 18/202 (8%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCT 52
           FD + ++ F+ N   YG  ING+CK+    +AI+      +G C  DV +Y+S+I+ LC 
Sbjct: 138 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 197

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             ++ EA  LF +MV QGI+ ++ TY  L+H       W+         LL  +   K  
Sbjct: 198 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH-----VTTLLNQMVNSKIL 252

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            ++ ++S V+D LC+ G+  EA + +D + ++G+ P VVTY  L++G C +  + EA K+
Sbjct: 253 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 312

Query: 168 LVQMKEKGCFPDSTSFNTVIQG 189
              M  KG  PD  S+ T+I  
Sbjct: 313 FDMMVRKGFAPDVISYTTLINA 334



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C +  +  A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 79  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 138

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DKM+ +G    +VTY  LI+   +     +A+ LL+++E+   + ++ +Y+ +ID LC+ 
Sbjct: 139 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 198

Query: 123 -------------VGR---------------------WEEARKKLDQLSEKGLVPGVVTY 148
                        VG+                     W+     L+Q+    ++P VV +
Sbjct: 199 RQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIF 258

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +++ LCK+G + EA +++  M ++G  PD  ++ T++ G  +++E D A
Sbjct: 259 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA 309



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 95/180 (52%), Gaps = 20/180 (11%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   ++ +CK   + E    +D  I++G+  DV  Y++L++G C  + + EAV++FD M
Sbjct: 257 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 316

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR- 125
           V +G   ++++Y  LI+   +  G   ++  +  L +       E    V  G   V R 
Sbjct: 317 VRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVK-------ETPDAVKGGAVEVIRK 369

Query: 126 -----WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
                +E+ R  L+++    ++P VV ++ +++ LCK+G +MEA  ++  M ++G  P++
Sbjct: 370 DKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNA 429



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  + ++  +        Q+   G+ P V T NILIN  C    +  A  +L ++ 
Sbjct: 48  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 107

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  PD T+F T+I+G  V+ +   A     K
Sbjct: 108 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 140


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 10/197 (5%)

Query: 15  YGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           YG  +NG+CKI  +D+A      I K   +   ++++LI+G  T  RL +A  +   MV 
Sbjct: 319 YGYLMNGLCKIGRVDAAKDLFYRIPKPTSV---IFNTLIHGFVTHGRLDDAKAVLSDMVT 375

Query: 69  Q-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  ++ TYN LI+  W+K     A+ +L+ +     + N+  Y++++DG C++G+ +
Sbjct: 376 SYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKID 435

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L+++S  GL P  V +N LI+  CK+  I EA ++  +M  KGC PD  +FN++I
Sbjct: 436 EAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 495

Query: 188 QGFLVKNETDRASSFLK 204
            G    +E   A   L+
Sbjct: 496 SGLCEVDEIKHALWLLR 512



 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++    K N   +   I+  CK   I  A+       +KG   DV+ ++SLI+GLC  +
Sbjct: 443 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 502

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K A+ L   M+++G+ A  VTYN LI+    +     A  L+  +      L+   Y+
Sbjct: 503 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYN 562

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLCR G  ++AR   +++   GLVP  ++ NILINGLC+ GM+ EA +   +M  +
Sbjct: 563 SLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLR 622

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  +FN++I G 
Sbjct: 623 GSTPDIVTFNSLINGL 638



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +  K N + Y I ++G CK+ +ID A          G+  +   ++ LI+  C  +
Sbjct: 408 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEH 467

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EAVE+F +M  +G   ++ T+N LI    E      A+ LL+ +  +    N   Y+
Sbjct: 468 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 527

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+   R G  +EARK ++++  +G +   +TYN LI GLC+ G + +A  L  +M   
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P S S N +I G       + A  F K+
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKE 618



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 49/249 (19%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           +D+  ++       +G+ +  +C + E+DSA+       K G   +  +Y +LI+ L   
Sbjct: 200 YDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKC 259

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYEL 108
           NR+ EA++L ++M   G   +  T+N +I      D   +  +     L++    D    
Sbjct: 260 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDI-- 317

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKL--------------------------------DQL 136
               Y  +++GLC++GR + A+                                   D +
Sbjct: 318 ---TYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMV 374

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +  G+VP V TYN LI G  KKG++  A ++L  M+ KGC P+  S+  ++ GF    + 
Sbjct: 375 TSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKI 434

Query: 197 DRASSFLKK 205
           D A + L +
Sbjct: 435 DEAYNLLNE 443



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 7/208 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y   IN   +  EI  A K       +G  LD   Y+SLI GLC   
Sbjct: 513 DMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAG 572

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A  LF+KM+  G+    ++ N LI+          A+   + +       +I  ++
Sbjct: 573 EVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFN 632

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLCR GR E+      +L  +G+ P  VTYN L++ LCK G + +A  LL +  E 
Sbjct: 633 SLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIED 692

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
           G  P+  +++ ++Q  + +   DR + +
Sbjct: 693 GFVPNDRTWSILLQSLVPQETLDRRTFY 720



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ ++  L + N  K A  +F  M+++ I   L T+  ++          SA+++L+ + 
Sbjct: 179 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMT 238

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +     N  +Y  +I  L +  R  EA + L+++   G VP   T+N +I GLCK   I 
Sbjct: 239 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 298

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA K++ +M  +G  PD  ++  ++ G       D A     +
Sbjct: 299 EAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYR 341



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           VY  LI  L +    K    L  +M  +GI  +   +  ++ D ++K G       L   
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRD-YDKAGFPGQTTRLMLE 165

Query: 102 ERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            R+ Y  E   + Y++V++ L      + A      +  + + P + T+ +++  LC   
Sbjct: 166 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVN 225

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +  A  +L  M + GC P+S  + T+I      N  + A   L++
Sbjct: 226 EVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 271


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  + F  N   Y   I+G CK + I+ A       +  G+  DV  +S+LI G C   +
Sbjct: 343 MIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGK 402

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A ELF  M        L T   ++   ++ Q    A++L + +E+   ELN+ +Y++
Sbjct: 403 PEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNI 462

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+DG+C  G+  +A++    L  KG+   VV Y  +I GLCK+G++ +A+ LL++M+E G
Sbjct: 463 VLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENG 522

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C P+  ++N  ++G L + +  R++ +L
Sbjct: 523 CLPNEFTYNVFVRGLLQRYDISRSTKYL 550



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 43/196 (21%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGIC-LDVFV-YSSLINGLCTF 53
            L +   + N + YG  ING+CK  +   AI      K   C LDV + YS++++ LC  
Sbjct: 166 SLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKD 225

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             + EA+ LF  M ++GI  +LV YN LIH                              
Sbjct: 226 GMVCEALNLFSGMTSKGIQPDLVAYNSLIH------------------------------ 255

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                GLC  GRW+EA   L  +  KG++P V T+N+L++  CK GMI  A  ++  M  
Sbjct: 256 -----GLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVH 310

Query: 174 KGCFPDSTSFNTVIQG 189
            G  PD  ++N+VI G
Sbjct: 311 VGVEPDVVTYNSVISG 326



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 8/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + +   I IN +C +         +    K G+   V  +++LINGLC    +  A  
Sbjct: 103 KPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAAR 162

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGL 120
             D +   G  +   TY  +I+   +      A+  L+ ++    +L++ + YS ++D L
Sbjct: 163 FADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSL 222

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   EA      ++ KG+ P +V YN LI+GLC  G   EA  LL  M  KG  P+ 
Sbjct: 223 CKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNV 282

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            +FN ++  F       RA + +
Sbjct: 283 QTFNVLVDNFCKDGMISRAKTIM 305



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 1/174 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+  + +IN LC  N       +   M   G+   +VT+  LI+    +     A
Sbjct: 101 GIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARA 160

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILIN 153
                +LE   ++ N   Y  +I+GLC+ G    A   L+++  +   +  V+ Y+ +++
Sbjct: 161 ARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMD 220

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            LCK GM+ EA  L   M  KG  PD  ++N++I G         A++ L   M
Sbjct: 221 SLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMM 274



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 100 TLERDKYELNI--EVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +L +  Y L I  +VY+L  +I+ LC +         L  + + G+ P VVT+  LINGL
Sbjct: 92  SLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGL 151

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C +G +  A +    +++ G   +S ++  +I G     +T  A  +L+K
Sbjct: 152 CAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEK 201


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 115/205 (56%), Gaps = 9/205 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y   I+ +CK  +++ A +       KGI  DV  ++SLI GLC  N  + A+
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           ELF++M  +G   +  TYN LI D+   +GR   A++LL+ +E      N+  Y+ +IDG
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLI-DSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDG 500

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+  R EEA +  D++  +G+   VVTYN LI+GLCK   + EA +L+ QM  +G  PD
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
             ++N+++  F    +  +A+  ++
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQ 585



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           +++ + F+ +   +   +NG+C+I  +       D  +++G   D+F Y+SLI GLC   
Sbjct: 306 EMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLG 365

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++EAVE+ ++M+ +  +   VTYN LI    ++     A  L + L       ++  ++
Sbjct: 366 EVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 425

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC       A +  +++  KG  P   TYN+LI+ LC +G + EA  LL +M+  
Sbjct: 426 SLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESS 485

Query: 175 GCFPDSTSFNTVIQGF 190
           GC  +  ++NT+I GF
Sbjct: 486 GCSRNVVTYNTLIDGF 501



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 17  IRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + ++G CK   I E    ID    +G   D F ++SL+NGLC    +K A+E+ D M+ +
Sbjct: 286 VLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQE 345

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++ TYN LI    +      A+ +L  +    +  N   Y+ +I  LC+  + EEA
Sbjct: 346 GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA 405

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +    L+ KG++P V T+N LI GLC       A +L  +MK KGC PD  ++N +I  
Sbjct: 406 TELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDS 465

Query: 190 FLVKNETDRASSFLKK 205
              +   + A S LK+
Sbjct: 466 LCSRGRLEEALSLLKE 481



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ F  +   Y   I G+CK+ E++ A++       +    +   Y++LI+ LC  N+
Sbjct: 342 MLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQ 401

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA EL   + ++GI  ++ T+N LI           AM L + ++      +   Y++
Sbjct: 402 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNM 461

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC  GR EEA   L ++   G    VVTYN LI+G CK   I EA+++  +M+ +G
Sbjct: 462 LIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQG 521

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +  ++NT+I G       + A+  + +
Sbjct: 522 ISRNVVTYNTLIDGLCKNRRVEEAAQLMDQ 551



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK + I+ A +       +GI  +V  Y++LI+GLC   R++EA +L 
Sbjct: 490 NVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM 549

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +G+  +  TYN L+           A  ++QT+  +  E +   Y  +I GL + 
Sbjct: 550 DQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKA 609

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR E A + L  +  KG+V    TYN +I  L ++    EA +L  +M EKG  PD+ ++
Sbjct: 610 GRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTY 669

Query: 184 NTVIQGF 190
             V +G 
Sbjct: 670 KVVFRGL 676



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 1   FDLTE-QRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  E Q    N   Y   I+G+CK R ++ A +       +G+  D F Y+SL+   C 
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              +K+A ++   M + G   + VTY  LI     K GR   A  LL+T++     L  +
Sbjct: 574 AGDIKKAADIVQTMTSNGCEPDSVTYGTLIL-GLSKAGRVELASRLLRTVQLKGMVLAPQ 632

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEADKLLVQ 170
            Y+ VI  L R  R  EA +   ++ EKG  P  VTY ++  GLC   G I EA   LV+
Sbjct: 633 TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVE 692

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M +KG  PD +SF  + +G 
Sbjct: 693 MTDKGFLPDFSSFLMLAEGL 712



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 107/204 (52%), Gaps = 9/204 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   + I I  +C+  +I  AI         G+  D   +++L+ G      +  A+ 
Sbjct: 208 KPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALR 267

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           + ++MVA G  +  VT N L+H  + K+GR    ++ +  +  + +  +   ++ +++GL
Sbjct: 268 IREQMVAAGCPSSNVTVNVLVH-GYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGL 326

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR+G  + A + LD + ++G  P + TYN LI GLCK G + EA ++L QM  +   P++
Sbjct: 327 CRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNT 386

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++NT+I     +N+ + A+   +
Sbjct: 387 VTYNTLISTLCKENQVEEATELAR 410



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +C    ++ A+         G   +V  Y++LI+G C   R++EA E+FD+M
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517

Query: 67  VAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             QGI+  +VTYN LI     +   E+  +     L++ L+ DK+      Y+ ++   C
Sbjct: 518 ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKF-----TYNSLLTYFC 572

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G  ++A   +  ++  G  P  VTY  LI GL K G +  A +LL  ++ KG      
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ 632

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           ++N VI+    +  T  A    ++ M
Sbjct: 633 TYNPVIKALFREKRTSEAVRLFREMM 658



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 92/174 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +GI  DV  ++ LI  LC  ++++ A+ + ++M + G++ +  T+  L+    E+   
Sbjct: 203 VSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNM 262

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ + + +       +    ++++ G C+ GR EE    +D++S +G  P   T+N L
Sbjct: 263 NGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSL 322

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +NGLC+ G +  A ++L  M ++G  PD  ++N++I G     E + A   L +
Sbjct: 323 VNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQ 376



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 88  KQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGV 145
           K G F +M  +LQ ++    E+    + ++I+   +   ++EA   +D + E+ GL    
Sbjct: 117 KDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDA 176

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            TYN L+N L     +   + +  +M  +G  PD T+FN +I+  
Sbjct: 177 FTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKAL 221


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C ++ +D  +K       +G+  +   YS L+ G C   ++K A ELF +MV+ G+
Sbjct: 365 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 424

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TY  L+ D     G+   A+ + + L++ K +L I +Y+ +I+G+C+ G+ E+A 
Sbjct: 425 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 483

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                L  KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G  P+  ++NT+I+  
Sbjct: 484 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 543

Query: 191 L 191
           L
Sbjct: 544 L 544



 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y   I+ +C+   ID+AI        KGI   V  Y+SL+ GLC    
Sbjct: 209 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TFN          +L+EA EL+ +M+ +GI+  ++TYN 
Sbjct: 269 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 328

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D +  Q R S A  +L  + R+K   +I  ++ +I G C V R ++  K    +S++
Sbjct: 329 LM-DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 387

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTY+IL+ G C+ G I  A++L  +M   G  PD  ++  ++ G     + ++A
Sbjct: 388 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 447



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++ G   DV  Y+S++NG+C       A++L  KM  + + A++ TY+ +I D+  
Sbjct: 171 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-DSLC 229

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G   +A++L + +E    + ++  Y+ ++ GLC+ G+W +    L  +  + +VP V+
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 289

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           T+N+L++   K+G + EA++L  +M  +G  P+  ++NT++ G+ ++N    A++ L
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+  +       +   +K G   D   +++LI GL    ++ EAV L 
Sbjct: 112 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 171

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   ++VTYN +++          A+ LL+ +E    + ++  YS +ID LCR 
Sbjct: 172 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 231

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A     ++  KG+   VVTYN L+ GLCK G   +   LL  M  +   P+  +F
Sbjct: 232 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 291

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++  F+ + +   A+   K+
Sbjct: 292 NVLLDVFVKEGKLQEANELYKE 313



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++    N   Y I + G C+  +I  A       +  G+  DV  Y  L++GLC   
Sbjct: 383 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 442

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+F+ +    +   +V Y  +I    +      A  L  +L     + N+  Y+
Sbjct: 443 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 502

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA   L ++ E G  P   TYN LI    + G +  + KL+ +MK  
Sbjct: 503 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 562

Query: 175 GCFPDSTSFNTVIQGFL 191
           G   D++S   VI   L
Sbjct: 563 GFSADASSIKMVIDMLL 579



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +++  + +IN  C   +   A  +  K++  G   +  T+N LI   + +     A
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +  +  + ++  Y+ +++G+CR G    A   L ++ E+ +   V TY+ +I+ 
Sbjct: 168 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 227

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LC+ G I  A  L  +M+ KG      ++N++++G 
Sbjct: 228 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 263



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 16  GIRINGMCKIREIDSAIKKGICLDVFVYSSLING-LCTFNRLK---------EAVELFDK 65
            +R + +C I    S+ ++        +SS+ NG +C   RL+         +A+ LF +
Sbjct: 16  SLRTDLLCTISSFFSSCERD-------FSSISNGNVCFRERLRSGIVDIKKDDAIALFQE 68

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+       LV ++         +     +   + LE +    NI   +++I+  CR  +
Sbjct: 69  MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 128

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A   L ++ + G  P   T+N LI GL  +G + EA  L+ +M E GC PD  ++N+
Sbjct: 129 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 188

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +T  A   L+K
Sbjct: 189 IVNGICRSGDTSLALDLLRK 208



 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           I++GI  +   YSSLI+G C  NRL EA ++ D MV +G
Sbjct: 726 IQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 122 RVGRWEEARKKLD---------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           R GR     +K+          ++ ++G+ P  +TY+ LI+G CK+  + EA+++L  M 
Sbjct: 702 RAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMV 761

Query: 173 EKG 175
            KG
Sbjct: 762 TKG 764


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+ E     N   Y   ING CK+  +D A+       +     DVF Y+ LI+G C   
Sbjct: 127 DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQE 186

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R ++  +L  +MV  G     +TYN L+ D+  K G++  A  L Q + R   + +   +
Sbjct: 187 RPQDGAKLLQEMVKYGCEPNFITYNTLM-DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTF 245

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +L+ID  C+VG+ + A +    ++++G +P + TYNI+I+G C+   I +A +LL +M E
Sbjct: 246 NLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTE 305

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC PD  ++N+++ G    ++ D A
Sbjct: 306 AGCPPDVVTYNSIVSGLCKASQVDEA 331



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   + + I+  CK+ ++D A +       +G   D++ Y+ +I+G C  NR+ +A +
Sbjct: 239 KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 298

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M   G   ++VTYN ++    +      A  + + L    Y L++   S +IDGLC
Sbjct: 299 LLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 358

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R ++A K L ++   G  P VV Y ILI+G CK   + ++     +M +KGC P   
Sbjct: 359 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVI 418

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           +++ VI   L K+   R    L K M
Sbjct: 419 TYSIVIDK-LCKSARVRDGCMLLKTM 443



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 35  GIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           G+C  D   YS+LING C     ++A  L D+M  +GI      YN +I    +     S
Sbjct: 27  GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 86

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + ++R     ++  Y++++D LC+  R  +A   L+ + E G  P VVTYN LIN
Sbjct: 87  ALVHYRDMQR-HCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLIN 145

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G CK G + EA  L  QM E  C PD  ++N +I G+  +      +  L++
Sbjct: 146 GFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQE 197



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 11/189 (5%)

Query: 14  VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CK R+       +D   K+GI     VY+++I GLC   R+  A+  +  M
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +     ++TY  L+ D   K  R S A  +L+ +       N+  Y+ +I+G C++G 
Sbjct: 95  -QRHCAPSVITYTILV-DALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGN 152

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA    +Q+ E    P V TYNILI+G CK+    +  KLL +M + GC P+  ++NT
Sbjct: 153 MDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 212

Query: 186 VIQGFLVKN 194
           ++   LVK+
Sbjct: 213 LMDS-LVKS 220



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 98/180 (54%), Gaps = 7/180 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T++    + + Y I I+G C+   ID A        + G   DV  Y+S+++GLC  ++
Sbjct: 268 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 327

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA E+++ +   G   ++VT + LI    + +    A  LL+ +ER+    ++  Y++
Sbjct: 328 VDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTI 387

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  + +++     ++ +KG VP V+TY+I+I+ LCK   + +   LL  M E+G
Sbjct: 388 LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           VY   I G+C    +DSA+      ++     V  Y+ L++ LC   R+ +A  + + M+
Sbjct: 70  VYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMI 129

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G    +VTYN LI+   +      A+ L   +  +    ++  Y+++IDG C+  R +
Sbjct: 130 EAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQ 189

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +  K L ++ + G  P  +TYN L++ L K G  ++A  L   M  + C P   +FN +I
Sbjct: 190 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 249

Query: 188 QGFLVKNETDRA 199
             F    + D A
Sbjct: 250 DMFCKVGQLDLA 261



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + +EA +LF   +    + + +TY+ LI+   + +    A  LL  +E+     +  VY+
Sbjct: 13  KAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 72

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC  GR + A      + ++   P V+TY IL++ LCK   I +A  +L  M E 
Sbjct: 73  TIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMIEA 131

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+  ++NT+I GF      D A
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEA 156



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE     +   Y   ++G+CK  ++D A +        G  LDV   S+LI+GLC   R
Sbjct: 303 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRR 362

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A +L  +M   G   ++V Y  LIH   +      ++A    +        +  YS+
Sbjct: 363 LDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSI 422

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGL 141
           VID LC+  R  +    L  + E+G+
Sbjct: 423 VIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + +  +Y   I+ +CK R +D A+        KGI  DVF YSSLI+ LC + R  +A
Sbjct: 235 KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 294

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT+N LI D + K+G+   A  L   + +   + NI  Y+ +I+
Sbjct: 295 SRLLSDMLERKINPNVVTFNSLI-DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 353

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA++    +  K  +P VVTYN LING CK   +++  +L   M  +G   
Sbjct: 354 GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++ T+I GF   ++ D A    K+
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQ 440



 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 11/196 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CK +++   +       ++G+  +   Y++LI+G    +    A  +F +M
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V+ G+   ++TYN L+ D   K G+   AM + + L++ K E +I  Y+++ +G+C+ G+
Sbjct: 442 VSDGVHPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+       LS KG+ P V+ YN +I+G CKKG+  EA  L ++MKE G  PDS ++NT
Sbjct: 501 VEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNT 560

Query: 186 VIQGFLVKNETDRASS 201
           +I+  L   + D+A+S
Sbjct: 561 LIRAHL--RDGDKAAS 574



 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   ING C    +D A       + K    DV  Y++LING C   
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ + +ELF  M  +G+    VTY  LIH  ++     +A  + + +  D    NI  Y+
Sbjct: 395 KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN 454

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DGLC+ G+ E+A    + L +  + P + TYNI+  G+CK G + +   L   +  K
Sbjct: 455 TLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK 514

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++NT+I GF  K   + A +   K
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 42/223 (18%)

Query: 19  INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C   +I E    +D  ++ G   D   +++L++GL   N+  EAV L ++MV +G 
Sbjct: 142 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 201

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR--------- 122
             +LVTY  +I+   ++     A+ LL  +E+ K E ++ +YS VID LC+         
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261

Query: 123 --------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
                                      GRW +A + L  + E+ + P VVT+N LI+   
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K+G ++EA+KL  +M ++   P+  ++N++I GF + +  D A
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   N   +   I+   K  ++       D  I++ I  ++  Y+SLING C  +
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA ++F  MV++    ++VTYN LI+   + +     M L + + R     N   Y+
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  +    + A+    Q+   G+ P ++TYN L++GLCK G + +A  +   +++ 
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479

Query: 175 GCFPDSTSFNTVIQG 189
              PD  ++N + +G
Sbjct: 480 KMEPDIYTYNIMSEG 494



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L++ +    +    +   +KM   G++  L TYN +I+    +     A+A+L  + 
Sbjct: 68  FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMM 127

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y  +I   + +++G C   R  EA   +DQ+ E G  P  VT+  L++GL +     
Sbjct: 128 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 187

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  KGC PD  ++  VI G   + E D A + L K
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 42/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN +C+  ++  A+       K G    +   +SL+NG C  NR+ EAV L 
Sbjct: 99  NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + VT+  L+H                                   GL + 
Sbjct: 159 DQMVEMGYQPDTVTFTTLVH-----------------------------------GLFQH 183

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA   ++++  KG  P +VTY  +INGLCK+G    A  LL +M++     D   +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243

Query: 184 NTVIQGFLVKNETDRA 199
           +TVI         D A
Sbjct: 244 STVIDSLCKYRHVDDA 259



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +L EAV+LF +MV       +V ++ L+     K  +F   ++  + +E      N+  Y
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLL-SAIAKMKKFDLVISFGEKMEILGVSHNLYTY 103

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+ LCR  +   A   L ++ + G  P +VT N L+NG C    I EA  L+ QM E
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  PD+ +F T++ G    N+   A + +++
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVER 195



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D++ +   GN   Y   I+G  +  + D+A       +  G+  ++  Y++L++GLC   
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +L++A+ +F+ +    +  ++ TYN ++ +   K G+      L  +L     + ++  Y
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYN-IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+ G  EEA     ++ E G +P   TYN LI    + G    + +L+ +M+ 
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583

Query: 174 KGCFPDSTSFNTV 186
                D++++  V
Sbjct: 584 CRFAGDASTYGLV 596



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNR 55
           L + + + + + Y I   GMCK  +++       S   KG+  DV  Y+++I+G C    
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +EA  LF KM   G   +  TYN LI  +     + ++  L++ +   ++  +   Y L
Sbjct: 536 KEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGL 595

Query: 116 VIDGL 120
           V D L
Sbjct: 596 VTDML 600



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           E ++ N L+H   ++     A+ L   + + +   +I  +S ++  + ++ +++      
Sbjct: 34  EKLSRNALLHLKLDE-----AVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFG 88

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           +++   G+   + TYNI+IN LC++  +  A  +L +M + G  P   + N+++ GF   
Sbjct: 89  EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query: 194 NETDRASSFLKK 205
           N    A + + +
Sbjct: 149 NRISEAVALVDQ 160


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+ E     N   Y   ING CK+  +D A+       +     DVF Y+ LI+G C   
Sbjct: 261 DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQE 320

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R ++  +L  +MV  G     +TYN L+ D+  K G++  A  L Q + R   + +   +
Sbjct: 321 RPQDGAKLLQEMVKYGCEPNFITYNTLM-DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTF 379

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +L+ID  C+VG+ + A +    ++++G +P + TYNI+I+G C+   I +A +LL +M E
Sbjct: 380 NLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTE 439

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC PD  ++N+++ G    ++ D A
Sbjct: 440 AGCPPDVVTYNSIVSGLCKASQVDEA 465



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T++    + + Y I I+G C+   ID A        + G   DV  Y+S+++GLC  ++
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 461

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA E+++ +   G   ++VT + LI    + +    A  LL+ +ER+    ++  Y++
Sbjct: 462 VDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTI 521

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  + +++     ++ +KG VP V+TY+I+I+ LCK   + +   LL  M E+G
Sbjct: 522 LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 581

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             PD+  + +VI G    +  D A    K
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYK 610



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   + + I+  CK+ ++D A +       +G   D++ Y+ +I+G C  NR+ +A +
Sbjct: 373 KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 432

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M   G   ++VTYN ++    +      A  + + L    Y L++   S +IDGLC
Sbjct: 433 LLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 492

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R ++A K L ++   G  P VV Y ILI+G CK   + ++     +M +KGC P   
Sbjct: 493 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVI 552

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           +++ VI   L K+   R    L K M
Sbjct: 553 TYSIVIDK-LCKSARVRDGCMLLKTM 577



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 35  GIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           G+C  D   YS+LING C     ++A  L D+M  +GI      YN +I    +     S
Sbjct: 161 GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 220

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + ++R+    ++  Y++++D LC+  R  +A   L+ + E G  P VVTYN LIN
Sbjct: 221 ALVHYRDMQRNCAP-SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLIN 279

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G CK G + EA  L  QM E  C PD  ++N +I G+  +      +  L++
Sbjct: 280 GFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQE 331



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 42/239 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE     +   Y   ++G+CK  ++D A +        G  LDV   S+LI+GLC   R
Sbjct: 437 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRR 496

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A +L  +M   G   ++V Y  LIH   +      ++A    +        +  YS+
Sbjct: 497 LDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSI 556

Query: 116 VIDGLCRVGR-----------------------------------WEEARKKLDQLSEKG 140
           VID LC+  R                                   ++EA +    + + G
Sbjct: 557 VIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG 616

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             P VVTYN+L++ LCK   + EA  LL  M+  GC PD+ ++N+V  GF    E D+A
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKA 675



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G CK  ++D ++        KG    V  YS +I+ LC   R+++   L   M
Sbjct: 518 AYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 577

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+T + + Y  +I    +      A  L + +++      +  Y++++D LC+V R 
Sbjct: 578 LERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRL 637

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA   L+ +   G +P  VTYN + +G  K     +A +L   MK +GC P    ++ +
Sbjct: 638 DEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLL 697

Query: 187 IQGFLVKNETDRA 199
           +   + + + D+A
Sbjct: 698 LTKLVAEEKMDQA 710



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           VY   I G+C    +DSA+      ++     V  Y+ L++ LC   R+ +A  + + M+
Sbjct: 204 VYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMI 263

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G    +VTYN LI+   +      A+ L   +  +    ++  Y+++IDG C+  R +
Sbjct: 264 EAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQ 323

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +  K L ++ + G  P  +TYN L++ L K G  ++A  L   M  + C P   +FN +I
Sbjct: 324 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 383

Query: 188 QGFLVKNETDRA 199
             F    + D A
Sbjct: 384 DMFCKVGQLDLA 395



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F  + L++      + +EA +LF        + + +TY+ LI+   + +    A  LL  
Sbjct: 133 FTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDE 192

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +E+     +  VY+ +I GLC  GR + A      + ++   P V+TY IL++ LCK   
Sbjct: 193 MEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDALCKSAR 251

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I +A  +L  M E GC P+  ++NT+I GF      D A
Sbjct: 252 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           L E + +G F     + + ING+CK        + +D+   KG   +   Y+++INGLC 
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 289

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L +AV L D+MVA       VTY  LI +   KQGR    + LL +LE   +  N  
Sbjct: 290 KGKLDKAVSLLDRMVASKCVPNDVTYGTLI-NGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS +I GL +  + EEA     ++ EKG  P +V Y+ LI+GLC++G + EA ++L +M
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             KGC P++ +++++I+GF     + +A
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKA 436



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I  MCK+  +D AI+       +    DVF Y +L++GLC  +R+ EAV L 
Sbjct: 171 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 230

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G     VT+N LI+   +K        L+  +       N   Y+ +I+GLC  
Sbjct: 231 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 290

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A   LD++     VP  VTY  LINGL K+G  ++   LL  ++E+G   +  ++
Sbjct: 291 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 350

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G   + +++ A    KK
Sbjct: 351 STLISGLFKEEKSEEAMGLWKK 372



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E+    N + Y   I+G+ K  + + A       ++KG   ++ VYS+LI+GLC   +
Sbjct: 338 LEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGK 397

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA E+  +MV +G T    TY+ LI   ++      A+ + + + ++    N   YS+
Sbjct: 398 LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSV 457

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +I GLC  G+  EA      +  +GL P VV Y+ +I+GLC  G +    KL  +M  +E
Sbjct: 458 LIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 517

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N +++    +N    A   L
Sbjct: 518 SDSQPDVVTYNILLRALCKQNSISHAIDLL 547



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVA--QGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           ++S++N +        A+E ++  V     I+  ++++N +I    +      A+ + + 
Sbjct: 138 FNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFRE 197

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +   K E ++  Y  ++DGLC+  R +EA   LD++  +G  P  VT+N+LINGLCKKG 
Sbjct: 198 MAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGD 257

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++   KL+  M  KGC P+  ++NT+I G  +K + D+A S L +
Sbjct: 258 MVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDR 302



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N  VY   I+G+C+  ++D A       + KG   + F YSSLI G      
Sbjct: 373 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 432

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A+ ++ +M         + Y+ LIH   E      AM +   +       ++  YS 
Sbjct: 433 SQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 492

Query: 116 VIDGLCRVGRWEEARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +I GLC  G  E   K  +++   E    P VVTYNIL+  LCK+  I  A  LL  M +
Sbjct: 493 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 552

Query: 174 KGCFPDSTSFNTVIQGFLVK-NETDRASSFL 203
           +GC PD  + N  +     K N       FL
Sbjct: 553 RGCNPDLITCNIFLNALREKLNPPQDGREFL 583


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           L E + +G F     + + ING+CK        + +D+   KG   +   Y+++INGLC 
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 305

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L +AV L D+MVA       VTY  LI +   KQGR    + LL +LE   +  N  
Sbjct: 306 KGKLDKAVSLLDRMVASKCVPNDVTYGTLI-NGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS +I GL +  + EEA     ++ EKG  P +V Y+ LI+GLC++G + EA ++L +M
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             KGC P++ +++++I+GF     + +A
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKA 452



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I  MCK+  +D AI+       +    DVF Y +L++GLC  +R+ EAV L 
Sbjct: 187 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 246

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G     VT+N LI+   +K        L+  +       N   Y+ +I+GLC  
Sbjct: 247 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 306

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A   LD++     VP  VTY  LINGL K+G  ++   LL  ++E+G   +  ++
Sbjct: 307 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 366

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G   + +++ A    KK
Sbjct: 367 STLISGLFKEEKSEEAMGLWKK 388



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            L E+    N + Y   I+G+ K  + + A       ++KG   ++ VYS+LI+GLC   
Sbjct: 353 SLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREG 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L EA E+  +MV +G T    TY+ LI   ++      A+ + + + ++    N   YS
Sbjct: 413 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 472

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--K 172
           ++I GLC  G+  EA      +  +GL P VV Y+ +I+GLC  G +    KL  +M  +
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 532

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E    PD  ++N +++    +N    A   L
Sbjct: 533 ESDSQPDVVTYNILLRALCKQNSISHAIDLL 563



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVA--QGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           ++S++N +        A+E ++  V     I+  ++++N +I    +      A+ + + 
Sbjct: 154 FNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFRE 213

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +   K E ++  Y  ++DGLC+  R +EA   LD++  +G  P  VT+N+LINGLCKKG 
Sbjct: 214 MAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGD 273

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++   KL+  M  KGC P+  ++NT+I G  +K + D+A S L +
Sbjct: 274 MVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDR 318



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N  VY   I+G+C+  ++D A       + KG   + F YSSLI G      
Sbjct: 389 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 448

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A+ ++ +M         + Y+ LIH   E      AM +   +       ++  YS 
Sbjct: 449 SQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 508

Query: 116 VIDGLCRVGRWEEARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +I GLC  G  E   K  +++   E    P VVTYNIL+  LCK+  I  A  LL  M +
Sbjct: 509 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 568

Query: 174 KGCFPDSTSFNTVIQGFLVK-NETDRASSFL 203
           +GC PD  + N  +     K N       FL
Sbjct: 569 RGCNPDLITCNIFLNALREKLNPPQDGREFL 599


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + +  +C  R  D A+         G+  DV  Y +LI GLC    + +AVE
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L  +M   GI   +V Y+ L+   + K GR+  +  +   +     E ++ +Y+ +ID L
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQ-GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG+ ++A   +D +  +GL P VVTYN+LIN +CK+G + EA  +L +M EKG  PD 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I+G     E D A   L++
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEE 315



 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 116/212 (54%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++E+  + +  +Y   I+ +CK+ +       +D  +++G+  +V  Y+ LIN +C   
Sbjct: 210 EMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEG 269

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEV 112
            +KEA+ +  KM  +G+  ++VTYN LI    +      AM LL+ + R K   + N+  
Sbjct: 270 SVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVT 329

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ VI GLC +GR  +A +    + E G +  +VTYN+LI GL +   + +A +L+ +M 
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT 389

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             G  PDS +++ +I+GF    + DRA   L 
Sbjct: 390 SLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS 421



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+ ++ ++       D     G+  D F YS LI G C   ++  A +L 
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +GI  EL  Y PL+    E+     A  L   ++ + + L++  YS +I G C+ 
Sbjct: 421 STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKA 479

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A++ L  + ++GL P  VTY+I+IN   K G +  A+ +L QM   G  PD   F
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVF 539

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +++IQG+  K E ++    +++
Sbjct: 540 DSLIQGYSTKGEINKVLELIRE 561



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 11/192 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  I G+C   E+D A++        GI  +V VYSSL+ G C   R ++  +
Sbjct: 147 RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGK 206

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F +M  +GI  ++V Y  LI D+  K G+   A  ++  + R   E N+  Y+++I+ +
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLI-DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCF-P 178
           C+ G  +EA   L ++SEKG+ P VVTYN LI GL     + EA  LL +M + K    P
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325

Query: 179 DSTSFNTVIQGF 190
           +  +FN+VIQG 
Sbjct: 326 NVVTFNSVIQGL 337



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 10/215 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
            D+  +R  + N   Y + IN MCK   +  AI       +KG+  DV  Y++LI GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 53  FNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
              + EA+ L ++MV     +   +VT+N +I    +      A  +   +E     +N+
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+L+I GL RV +  +A + +D+++  GL P   TY+ILI G CK   +  A+ LL  
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M+++G  P+   +  ++     +   +RA +   +
Sbjct: 423 MRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNE 457



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEV 112
           L EA  L D + +     + V+YN ++     +     A ALL+ +  + +     N   
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++  LC     ++A   L  +   G+   VVTY  LI GLC    + +A +L+ +M 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 173 EKGCFPDSTSFNTVIQGF 190
           E G  P+   +++++QG+
Sbjct: 178 ESGIEPNVVVYSSLLQGY 195



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLS---EKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           Y+ V+  LCR G  + A   L  +S        P  V+Y +L+  LC   +  +A  LL 
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            M+  G   D  ++ T+I+G     E D+A   +
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMCK---------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           +Y I ING C+         IR  D  +++G  LDV  Y++++NGLC    L +A  LFD
Sbjct: 362 IYTILINGYCRNGMMSEALEIR--DKMLEQGCALDVVAYNTILNGLCKKKLLADANALFD 419

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +MV +G+  +  T+  LIH + ++     A++L   + +   + +I  Y+++IDG C+  
Sbjct: 420 EMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTT 479

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E+A +  +++  + + P  ++Y IL+NG C  G + EA +L  +M  KG  P   + N
Sbjct: 480 EMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCN 539

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           TVI+G+    +  +A  FL K
Sbjct: 540 TVIKGYCRSGDLSKADEFLGK 560



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 7/207 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T++  K +   Y I I+G CK  E++ A       I + I  +   Y+ L+NG C    
Sbjct: 456 MTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGF 515

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  L+D+M+ +GI   LVT N +I           A   L  +  +    +   Y+ 
Sbjct: 516 VSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNT 575

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G  +    ++A   ++++  KGL P VVTYN+++NG C++G + EA+ +L +M E+G
Sbjct: 576 LINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERG 635

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             PD +++ T+I G++ ++    A  F
Sbjct: 636 IDPDRSTYTTLINGYVSQDNLKEAFRF 662



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    +   Y   IN  C+          ++S   KG+   +F Y+++INGLC   
Sbjct: 210 DMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKG 269

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R   A  +F++M++ G++ +  TYN L+ ++        A  +   +       ++  +S
Sbjct: 270 RYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFS 329

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I    R G  ++A      +   GLVP  V Y ILING C+ GM+ EA ++  +M E+
Sbjct: 330 SLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQ 389

Query: 175 GCFPDSTSFNTVIQGFLVK 193
           GC  D  ++NT++ G   K
Sbjct: 390 GCALDVVAYNTILNGLCKK 408



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  ++   N   Y I +NG C +       R  D  I+KGI   +   +++I G C   
Sbjct: 490 EMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSG 549

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L +A E   KM+++G+  + +TYN LI+   + +    A  L+  +E    + ++  Y+
Sbjct: 550 DLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYN 609

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G CR GR +EA   L ++ E+G+ P   TY  LING   +  + EA +   +M ++
Sbjct: 610 VILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQR 669

Query: 175 GCFPD 179
           G  PD
Sbjct: 670 GFVPD 674



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 85/156 (54%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D  +Y+ LING C    + EA+E+ DKM+ QG   ++V YN +++   +K+    A
Sbjct: 355 GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADA 414

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            AL   +       +   ++ +I G C+ G   +A      +++K + P +VTYNILI+G
Sbjct: 415 NALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDG 474

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK   + +A++L  +M  +  FP+  S+  ++ G+
Sbjct: 475 FCKTTEMEKANELWNEMISRKIFPNHISYAILVNGY 510



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 3/191 (1%)

Query: 14  VYGIRINGMCKIREIDS-AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           V   R N   + ++I S  + +G+  D+  +SSLI        L +A+  F  M   G+ 
Sbjct: 298 VESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLV 357

Query: 73  AELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            + V Y  LI + + + G  S A+ +   +      L++  Y+ +++GLC+     +A  
Sbjct: 358 PDNVIYTILI-NGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANA 416

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D++ E+G+VP   T+  LI+G CK+G + +A  L   M +K   PD  ++N +I GF 
Sbjct: 417 LFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFC 476

Query: 192 VKNETDRASSF 202
              E ++A+  
Sbjct: 477 KTTEMEKANEL 487



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 17  IRINGMCKIREIDSAIK-KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           IR +G+ ++  ++S I     C +D  V+  LI       +L E  + F  +  +G    
Sbjct: 90  IRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVS 149

Query: 75  LVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           +   N L+     K G    A  +   + R   ELN+   +++++ LC+  + ++ +  L
Sbjct: 150 INACNSLL-GGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFL 208

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
             + +KG+   +VTYN LIN  C++G++ EA +++  M  KG  P   ++N VI G   K
Sbjct: 209 IDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKK 268

Query: 194 NETDRA 199
               RA
Sbjct: 269 GRYVRA 274


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + +  +C  R  D A+         G+  DV  Y +LI GLC    + +AVE
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L  +M   GI   +V Y+ L+   + K GR+  +  +   +     E ++ +Y+ +ID L
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQ-GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG+ ++A   +D +  +GL P VVTYN+LIN +CK+G + EA  +L +M EKG  PD 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I+G     E D A   L++
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEE 315



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 116/212 (54%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++E+  + +  +Y   I+ +CK+ +       +D  +++G+  +V  Y+ LIN +C   
Sbjct: 210 EMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEG 269

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEV 112
            +KEA+ +  KM  +G+  ++VTYN LI    +      AM LL+ + R K   + N+  
Sbjct: 270 SVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVT 329

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ VI GLC +GR  +A +    + E G +  +VTYN+LI GL +   + +A +L+ +M 
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT 389

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             G  PDS +++ +I+GF    + DRA   L 
Sbjct: 390 SLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS 421



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+ ++ ++       D     G+  D F YS LI G C   ++  A +L 
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +GI  EL  Y PL+    E+     A  L   ++ + + L++  YS +I G C+ 
Sbjct: 421 STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKA 479

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A++ L  + ++GL P  VTY+I+IN   K G +  A+ +L QM   G  PD   F
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVF 539

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +++IQG+  K E ++    +++
Sbjct: 540 DSLIQGYSTKGEINKVLELIRE 561



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 11/192 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  I G+C   E+D A++        GI  +V VYSSL+ G C   R ++  +
Sbjct: 147 RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGK 206

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F +M  +GI  ++V Y  LI D+  K G+   A  ++  + R   E N+  Y+++I+ +
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLI-DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCF-P 178
           C+ G  +EA   L ++SEKG+ P VVTYN LI GL     + EA  LL +M + K    P
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325

Query: 179 DSTSFNTVIQGF 190
           +  +FN+VIQG 
Sbjct: 326 NVVTFNSVIQGL 337



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  +  + N   Y + IN MCK   +  AI       +KG+  DV  Y++LI GL     
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 56  LKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           + EA+ L ++MV     +   +VT+N +I    +      A  +   +E     +N+  Y
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +L+I GL RV +  +A + +D+++  GL P   TY+ILI G CK   +  A+ LL  M++
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 174 KGCFPD 179
           +G  P+
Sbjct: 426 RGIEPE 431



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEV 112
           L EA  L D + +     + V+YN ++     +     A ALL+ +  + +     N   
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++  LC     ++A   L  +   G+   VVTY  LI GLC    + +A +L+ +M 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 173 EKGCFPDSTSFNTVIQGF 190
           E G  P+   +++++QG+
Sbjct: 178 ESGIEPNVVVYSSLLQGY 195



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLS---EKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           Y+ V+  LCR G  + A   L  +S        P  V+Y +L+  LC   +  +A  LL 
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            M+  G   D  ++ T+I+G     E D+A   +
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK + ++  +       ++G+  +   Y+ LI GL        A E+F +M
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V+ G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+ G+
Sbjct: 458 VSDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+       LS KG+ P VV YN +I+G C+KG   EAD L  +MKE G  P+S  +NT
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 576

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+  L   + + ++  +K+
Sbjct: 577 LIRARLRDGDREASAELIKE 596



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING C    +D A       + K    DV  Y++LI G C + R++E +E+F +M
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTYN LI   ++      A  + + +  D    NI  Y+ ++DGLC+ G+ 
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A    + L    + P + TYNI+I G+CK G + +   L   +  KG  PD  ++NT+
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 542

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K   + A +  K+
Sbjct: 543 ISGFCRKGSKEEADALFKE 561



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + +D A+        KGI  +V  YSSLI+ LC + R  +A  L   M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I  ++ T++ LI D + K+G+   A  L   + +   + +I  YS +I+G C   R
Sbjct: 318 IERKINPDVFTFSALI-DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA++  + +  K   P VVTYN LI G CK   + E  ++  +M ++G   ++ ++N 
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +IQG     + D A    K+
Sbjct: 437 LIQGLFQAGDCDMAQEIFKE 456



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C  + I  A+         G   +   +++LI+GL   N+  EA+ L D+MVA+G 
Sbjct: 158 LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGC 217

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A  LL  +E+ K E  + +Y+ +IDGLC+    ++A  
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 277

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M E+   PD  +F+ +I  F+
Sbjct: 278 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G   ++   SSL+NG C   R+ EAV L 
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G     VT+N LIH  +       AMAL+  +     + ++  Y +V++GLC+ 
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++ +  L PGV+ YN +I+GLCK   + +A  L  +M+ KG  P+  ++
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 184 NTVIQ 188
           +++I 
Sbjct: 295 SSLIS 299



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  + + YS LIN  C  ++L  A+ +  KM+  G    +VT + L++     +    A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y+ N   ++ +I GL    +  EA   +D++  KG  P +VTY +++NG
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK+G    A  LL +M++    P    +NT+I G       D A +  K+
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y I I G+ +  + D A       +  G+  ++  Y++L++GLC   
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +   + TYN +I    +         L   L     + ++  Y+
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600

Query: 175 GCFPDSTSFNTV 186
           G   D+++   V
Sbjct: 601 GFAGDASTIGLV 612


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  Y++LING C   
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ E VELF +M  +G+    VTY  LIH  ++ +   +A  + + +  D    NI  Y+
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DGLC+ G+ E+A    + L    + P + TYNI+I G+CK G + +   L   +  K
Sbjct: 475 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 534

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD   +NT+I GF  K   + A +  +K
Sbjct: 535 GVKPDVIIYNTMISGFCRKGLKEEADALFRK 565



 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK + ID  +       ++G+  +   Y++LI+G         A  +F
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV+ G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+
Sbjct: 459 KQMVSDGVHPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+       LS KG+ P V+ YN +I+G C+KG+  EAD L  +M+E G  PDS +
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + N  +Y   I+ +CK R  D A+        KG+  +V  YSSLI+ LC + R  +A
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDA 314

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT+N LI D + K+G+   A  L   + +   + +I  YS +I+
Sbjct: 315 SRLLSDMIERKINPNVVTFNALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA+   + +  K   P VVTYN LING CK   I E  +L  +M ++G   
Sbjct: 374 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++ T+I GF    + D A    K+
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQ 460



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 2/181 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G
Sbjct: 163 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               LVTY  +++   ++     A  LL  +E  K E N+ +YS VID LC+    ++A 
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               ++  KG+ P V+TY+ LI+ LC      +A +LL  M E+   P+  +FN +I  F
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340

Query: 191 L 191
           +
Sbjct: 341 V 341



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  +I  A+       K G    +   SSL+NG C   R+ +AV L 
Sbjct: 119 NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + +T+  LIH  +       A+AL+  + +   + N+  Y +V++GLC+ 
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++    +   VV Y+ +I+ LCK     +A  L  +M+ KG  P+  ++
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298

Query: 184 NTVIQ 188
           +++I 
Sbjct: 299 SSLIS 303



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM K R + S         +F ++ L++ +    +    + L +KM   GI+  L TYN 
Sbjct: 75  GMVKSRPLPS---------IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI+    +     A+ALL  + +  YE +I   S +++G C   R  +A   +DQ+ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P  +T+  LI+GL       EA  L+ +M ++GC P+  ++  V+ G   + + D A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245

Query: 201 SFLKK 205
           + L K
Sbjct: 246 NLLNK 250



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +++ Y+ LIN  C  +++  A+ L  KM+  G    +VT + L++     +    A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y  +   ++ +I GL    +  EA   +D++ ++G  P +VTY +++NG
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LCK+G I  A  LL +M+      +   ++TVI         D A
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 114/199 (57%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G CK + +D  +       ++G+  +   Y++LI+G         A  +F
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV+ G+  +++TY+ L+ D     G+  +A+ + + L+R K E +I  Y+++I+G+C+
Sbjct: 455 KQMVSDGVLPDIMTYSILL-DGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+       LS KG+ P VVTY  +++G C+KG+  EAD L  +MKE+G  PDS +
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 574 YNTLIRAHL--RDGDKAAS 590



 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  Y++LI G C   
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ E +ELF +M  +G+    VTY  LIH  ++ +   +A  + + +  D    +I  YS
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGLC  G+ E A    + L    + P + TYNI+I G+CK G + +   L   +  K
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++ T++ GF  K   + A +  ++
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C    I  A+       + G   D F +++LI+GL   NR  EAV L D+MV +G 
Sbjct: 158 LNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC 217

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A++LL+ +E+ K E  + +Y+ +ID LC      +A  
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALN 277

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P VVTYN LI  LC  G   +A +LL  M E+   P+  +F+ +I  F+
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+ +C  + ++ A+        KGI  +V  Y+SLI  LC + R  +A  L   M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I   +VT++ LI D + K+G+   A  L   + +   + +I  YS +I+G C   R
Sbjct: 318 IERKINPNVVTFSALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA+   + +  K   P VVTYN LI G CK   + E  +L  +M ++G   ++ ++ T
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I GF    E D A    K+
Sbjct: 437 LIHGFFQARECDNAQIVFKQ 456



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G   D+   +SL+NG C  NR+ +AV L 
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MV  G   +  T+N LIH  +       A+AL+  +     + ++  Y +V++GLC+ 
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L ++ +  + PGVV YN +I+ LC    + +A  L  +M  KG  P+  ++
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294

Query: 184 NTVIQ 188
           N++I+
Sbjct: 295 NSLIR 299



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L++ +   N+    + L ++M   GI+  L TY+ LI+    +     A+A+L  + 
Sbjct: 84  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   + +++G C   R  +A   + Q+ E G  P   T+N LI+GL +     
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  KGC PD  ++  V+ G   + + D A S LKK
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 10/210 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I+G  + RE D+A       +  G+  D+  YS L++GLC   
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+ +F+ +    +  ++ TYN +I    +         L  +L     + N+  Y+
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G  EEA     ++ E+G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               D+++   ++   L     D+  SFLK
Sbjct: 601 RFVGDASTIG-LVTNMLHDGRLDK--SFLK 627



 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 55/110 (50%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   + + +   +I  +S ++  + ++ +++      +Q+   G+   + TY+ILIN
Sbjct: 65  AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             C++  +  A  +L +M + G  PD  + N+++ GF   N    A S +
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK R ++ A+        KGI  ++F Y+SLI GLC F+R +EA  + ++M
Sbjct: 47  TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 106

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++  I   +VT++ LI+   ++   F A  +L+T+     E N+  YS +++G       
Sbjct: 107 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 166

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EARK  D +  KG  P V +YNILING CK   I EA +L  +M  +G  PD  S+NT+
Sbjct: 167 FEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 226

Query: 187 IQGF 190
           I G 
Sbjct: 227 IDGL 230



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 103/195 (52%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  + ++ + H Y   ING+CKI E  +A        + G   DV  YS++I+ LC   R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+++F  M A+GI+  + TYN LI           A A+L  +       NI  +SL
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+  C+ G   EAR  L  ++E G+ P VVTY+ L+NG   +  + EA KL   M  KG
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 176 CFPDSTSFNTVIQGF 190
           C PD  S+N +I G+
Sbjct: 181 CKPDVFSYNILINGY 195



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           +TE   + N   Y   +NG     E+       D  I KG   DVF Y+ LING C   R
Sbjct: 141 MTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 200

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA +LF++M+ QG+T ++V+YN LI D   + GR   A  L + +  +    ++  YS
Sbjct: 201 IGEAKQLFNEMIHQGLTPDIVSYNTLI-DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYS 259

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DG C+ G   +A +    +    L P +V YNILI+ +CK   + EA KL  ++  +
Sbjct: 260 ILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ 319

Query: 175 GCFPD 179
           G  P+
Sbjct: 320 GLQPN 324



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 9/145 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I ING CK + I  A       I +G+  D+  Y++LI+GLC   RL+EA +
Sbjct: 182 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 241

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF  M+  G   +L TY+ L+ D + KQG  + A  L + ++    + N+ +Y+++ID +
Sbjct: 242 LFKNMLTNGNLPDLCTYSILL-DGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 300

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGV 145
           C+    +EARK   +L  +GL P +
Sbjct: 301 CKSRNLKEARKLFSELFVQGLQPNM 325



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y+ ++  Y+ +I+GLC++G    A     ++ E G  P VVTY+ +I+ LCK   + EA 
Sbjct: 6   YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +   MK KG  P+  ++N++IQG    +    AS+ L + M
Sbjct: 66  DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMM 107



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 35/173 (20%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G   DV  Y+++INGLC       A  LF KM   G   ++VTY             
Sbjct: 2   VARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTY------------- 48

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                 S +ID LC+  R  EA      +  KG+ P + TYN L
Sbjct: 49  ----------------------STIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSL 86

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I GLC      EA  +L +M      P+  +F+ +I  F  +     A   LK
Sbjct: 87  IQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLK 139


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C ++ +D  +K       +G+  +   YS L+ G C   ++K A ELF +MV+ G+
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TY  L+ D     G+   A+ + + L++ K +L I +Y+ +I+G+C+ G+ E+A 
Sbjct: 435 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                L  KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G  P+  ++NT+I+  
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 191 L 191
           L
Sbjct: 554 L 554



 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y   I+ +C+   ID+AI        KGI   V  Y+SL+ GLC    
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TFN          +L+EA EL+ +M+ +GI+  ++TYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D +  Q R S A  +L  + R+K   +I  ++ +I G C V R ++  K    +S++
Sbjct: 339 LM-DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 397

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTY+IL+ G C+ G I  A++L  +M   G  PD  ++  ++ G     + ++A
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++ G   DV  Y+S++NG+C       A++L  KM  + + A++ TY+ +I D+  
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-DSLC 239

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G   +A++L + +E    + ++  Y+ ++ GLC+ G+W +    L  +  + +VP V+
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           T+N+L++   K+G + EA++L  +M  +G  P+  ++NT++ G+ ++N    A++ L
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+  +       +   +K G   D   +++LI GL    ++ EAV L 
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   ++VTYN +++          A+ LL+ +E    + ++  YS +ID LCR 
Sbjct: 182 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A     ++  KG+   VVTYN L+ GLCK G   +   LL  M  +   P+  +F
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++  F+ + +   A+   K+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKE 323



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++    N   Y I + G C+  +I  A       +  G+  DV  Y  L++GLC   
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+F+ +    +   +V Y  +I    +      A  L  +L     + N+  Y+
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA   L ++ E G  P   TYN LI    + G +  + KL+ +MK  
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 572

Query: 175 GCFPDSTSFNTVIQGFL 191
           G   D++S   VI   L
Sbjct: 573 GFSADASSIKMVIDMLL 589



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +++  + +IN  C   +   A  +  K++  G   +  T+N LI   + +     A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +  +  + ++  Y+ +++G+CR G    A   L ++ E+ +   V TY+ +I+ 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LC+ G I  A  L  +M+ KG      ++N++++G 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 273



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 16  GIRINGMCKIREIDSAIKKGICLDVFVYSSLING-LCTFNRLK---------EAVELFDK 65
            +R + +C I    S+ ++        +SS+ NG +C   RL+         +A+ LF +
Sbjct: 26  SLRTDLLCTISSFFSSCERD-------FSSISNGNVCFRERLRSGIVDIKKDDAIALFQE 78

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+       LV ++         +     +   + LE +    NI   +++I+  CR  +
Sbjct: 79  MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 138

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A   L ++ + G  P   T+N LI GL  +G + EA  L+ +M E GC PD  ++N+
Sbjct: 139 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 198

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +T  A   L+K
Sbjct: 199 IVNGICRSGDTSLALDLLRK 218


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 111/206 (53%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +K N  +Y   I+G+CK +++D+A+       K GI  DV  Y+SLI+GLC+  R  +A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            +   M  + I  ++ T+N LI D   K+GR S A    + + R   + +I  YSL+I G
Sbjct: 242 RMVSCMTKREIYPDVFTFNALI-DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC   R +EA +    +  KG  P VVTY+ILING CK   +    KL  +M ++G   +
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + ++  +IQG+    + + A    ++
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRR 386



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 7/173 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK ++++  +K       +G+  +   Y+ LI G C   +L  A E+F +M
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRM 387

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+   ++TYN L+H   +      A+ +L  ++++  + +I  Y+++I G+C+ G  
Sbjct: 388 VFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            +A      L+ +GL+P + TY  ++ GL KKG+  EAD L  +MKE G  P+
Sbjct: 448 ADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I +N  C+  ++  A       IK G    +  + SL+NG C  +R+ +A+ +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G    +V YN +I    + +   +A+ LL  +E+D    ++  Y+ +I GLC  
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GRW +A + +  ++++ + P V T+N LI+   K+G + EA++   +M  +   PD  ++
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294

Query: 184 NTVIQGFLVKNETDRA 199
           + +I G  + +  D A
Sbjct: 295 SLLIYGLCMYSRLDEA 310



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 92/168 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ +  D+  YS LI GLC ++RL EA E+F  MV++G   ++VTY+ LI+   + +  
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              M L   + +     N   Y+++I G CR G+   A +   ++   G+ P ++TYN+L
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVL 402

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++GLC  G I +A  +L  M++ G   D  ++N +I+G     E   A
Sbjct: 403 LHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA 450



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G+C    +D A       + KG   DV  YS LING C   +++  ++LF +M
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+    VTY  LI   + + G+ + A  + + +       NI  Y++++ GLC  G+
Sbjct: 353 SQRGVVRNTVTYTILIQ-GYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+A   L  + + G+   +VTYNI+I G+CK G + +A  +   +  +G  PD  ++ T
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTT 471

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G   K     A +  +K
Sbjct: 472 MMLGLYKKGLRREADALFRK 491



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N  C  ++L  A+    KM+  G    +VT+  L++        + A+ +   +    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y+ N+ +Y+ +IDGLC+  + + A   L+++ + G+ P VVTYN LI+GLC  G   +A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +++  M ++  +PD  +FN +I   + +     A  F ++
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   I+G CK + I+ A+       K G   DV  +++LI G C   R   A ELF  M
Sbjct: 359 VFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNM 418

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G    L T   +I D   K+   S A++L + +E+   +LNI +YS+++DG+C  G+
Sbjct: 419 HKYGQVPNLQTC-AVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGK 477

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A +    L  KGL   V  Y I+I GLCK+G + +A+ LL+ M+E GC P++ ++N 
Sbjct: 478 LNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNV 537

Query: 186 VIQGFLVKNETDRASSFL 203
            +QG L K E  R+  +L
Sbjct: 538 FVQGLLTKKEIARSIKYL 555



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 17  IRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN +C+++ +        +  K G+   V   ++LINGLC    + +AV L D M   
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKM 176

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               ++ TY  LI+   +     +A+  L+ +E   ++ N+ VYS ++DGLC+ G   EA
Sbjct: 177 WYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+ P +VTY  LI GLC  G   EA  LL +M + G  PD    N ++  
Sbjct: 237 LNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDA 296

Query: 190 FLVKNETDRASSFL 203
           F  + +  +A S +
Sbjct: 297 FCKEGKVMQAKSVI 310



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+C    +  A+       K    LDV+ Y  LINGLC       AV    KM  +  
Sbjct: 154 INGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNW 213

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +V Y+  I D   K G  S A+ L   +       N+  Y+ +I GLC  GRW+EA 
Sbjct: 214 KPNVVVYST-IMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAG 272

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             LD++ + G+ P +   NIL++  CK+G +M+A  ++  M   G  PD  ++N++I  +
Sbjct: 273 SLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY 332

Query: 191 LVKNETDRA 199
            ++N+ + A
Sbjct: 333 CLQNKMNEA 341



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ +K N  VY   ++G+CK   +  A+        KG+  ++  Y+ LI GLC F R
Sbjct: 208 MEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGR 267

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            KEA  L D+M+  G+  +L   N L+ D + K+G+   A +++  +       ++  Y+
Sbjct: 268 WKEAGSLLDEMMKMGMRPDLQMLNILV-DAFCKEGKVMQAKSVIGFMILTGEGPDVFTYN 326

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C   +  EA +    +  +G +P +V +  LI+G CK   I +A  LL +M + 
Sbjct: 327 SLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKM 386

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++ T+I GF
Sbjct: 387 GFVPDVATWTTLIGGF 402



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + YG+ ING+CK  +  +A+       ++    +V VYS++++GLC    + EA+ L 
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 64  DKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            +M  +G+   LVTY  LI        W++ G     +LL  + +     ++++ ++++D
Sbjct: 241 SEMNGKGVRPNLVTYACLIQGLCNFGRWKEAG-----SLLDEMMKMGMRPDLQMLNILVD 295

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G+  +A+  +  +   G  P V TYN LI+  C +  + EA ++   M  +G  P
Sbjct: 296 AFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLP 355

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D   F ++I G+      ++A   L++
Sbjct: 356 DIVVFTSLIHGWCKDKNINKAMHLLEE 382



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +   + +  +  I ++  CK  ++  A       I  G   DVF Y+SLI+  C  N
Sbjct: 277 EMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQN 336

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA+ +F  MV++G   ++V +  LIH   + +    AM LL+ + +  +  ++  ++
Sbjct: 337 KMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWT 396

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+ GR   A++    + + G VP + T  ++++GLCK+ ++ EA  L   M++ 
Sbjct: 397 TLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKS 456



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D    + +IN LC    +     +   M   G+   ++T   LI+    +     A
Sbjct: 107 GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQA 166

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +E+  Y L++  Y ++I+GLC+ G    A   L ++ E+   P VV Y+ +++G
Sbjct: 167 VGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDG 226

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LCK G++ EA  L  +M  KG  P+  ++  +IQG         A S L + M
Sbjct: 227 LCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMM 279



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERD 104
           +++GLC  N L EAV L   M    +   +V Y+ L+ D     G+  +A  L  +L   
Sbjct: 433 ILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILL-DGMCSAGKLNAAWELFSSLPGK 491

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             ++N+ +Y+++I GLC+ G  ++A   L  + E G +P   TYN+ + GL  K  I  +
Sbjct: 492 GLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARS 551

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K L  M++KG   D+ +   +I  +L  NE D
Sbjct: 552 IKYLTIMRDKGFSVDAATTEFIIN-YLSTNEGD 583



 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILI 152
           A+ L Q + R K   +++ ++L++  + R+  +  A   +  + S  G+    +T NI+I
Sbjct: 60  ALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVI 119

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N LC+  ++     +L  M + G  P   +  T+I G  V+    +A
Sbjct: 120 NCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQA 166


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK + ++  +       ++G+  +   Y+ LI GL        A E+F +M
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 252

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V+ G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+ G+
Sbjct: 253 VSDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 311

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+       LS KG+ P VV YN +I+G C+KG   EAD L  +MKE G  P+S  +NT
Sbjct: 312 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 371

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+  L   + + ++  +K+
Sbjct: 372 LIRARLRDGDREASAELIKE 391



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING C    +D A       + K    DV  Y++LI G C + R++E +E+F +M
Sbjct: 158 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 217

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTYN LI   ++      A  + + +  D    NI  Y+ ++DGLC+ G+ 
Sbjct: 218 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 277

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A    + L    + P + TYNI+I G+CK G + +   L   +  KG  PD  ++NT+
Sbjct: 278 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 337

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K   + A +  K+
Sbjct: 338 ISGFCRKGSKEEADALFKE 356



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA------IKKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG+ +NG+CK  + D A      +++G +   V +Y+++I+GLC +  + +A+ LF +M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +GI   +VTY+ LI       GR+S A  LL  +   K   ++  +S +ID   + G+
Sbjct: 78  ETKGIRPNVVTYSSLIS-CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 136

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA K  D++ ++ + P +VTY+ LING C    + EA ++   M  K CFPD  ++NT
Sbjct: 137 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 196

Query: 186 VIQGF 190
           +I+GF
Sbjct: 197 LIKGF 201



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + +D A+        KGI  +V  YSSLI+ LC + R  +A  L   M
Sbjct: 53  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 112

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I  ++ T++ LI D + K+G+   A  L   + +   + +I  YS +I+G C   R
Sbjct: 113 IERKINPDVFTFSALI-DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 171

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA++  + +  K   P VVTYN LI G CK   + E  ++  +M ++G   ++ ++N 
Sbjct: 172 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 231

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +IQG     + D A    K+
Sbjct: 232 LIQGLFQAGDCDMAQEIFKE 251



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 89/177 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID  + KG   D+  Y  ++NGLC       A  L +KM    +   ++ YN +I    +
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L + +E      N+  YS +I  LC  GRW +A + L  + E+ + P V T
Sbjct: 64  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 123

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           ++ LI+   K+G ++EA+KL  +M ++   P   +++++I GF + +  D A    +
Sbjct: 124 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 74/130 (56%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L D+MVA+G   +LVTY  +++   ++     A  LL  +E+ K E  + +Y+ +IDGLC
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +    ++A     ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M E+   PD  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 182 SFNTVIQGFL 191
           +F+ +I  F+
Sbjct: 123 TFSALIDAFV 132



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y I I G+ +  + D A       +  G+  ++  Y++L++GLC   
Sbjct: 216 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 275

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +   + TYN +I    +         L   L     + ++  Y+
Sbjct: 276 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 335

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  
Sbjct: 336 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 395

Query: 175 GCFPDSTSFNTV 186
           G   D+++   V
Sbjct: 396 GFAGDASTIGLV 407



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 56/94 (59%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           MAL+  +     + ++  Y +V++GLC+ G  + A   L+++ +  L PGV+ YN +I+G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           LCK   + +A  L  +M+ KG  P+  +++++I 
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 94



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           +D++  KG  P +VTY +++NGLCK+G    A  LL +M++    P    +NT+I G   
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 193 KNETDRASSFLKK 205
               D A +  K+
Sbjct: 64  YKHMDDALNLFKE 76


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 106/176 (60%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++    DV  Y+ L+   C  +  K+A++L D+M  +G T ++VTYN +++   +
Sbjct: 183 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 242

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A+  L+ L     E N   Y++V+ GLC   RWE+A + + ++ +KG  P VVT
Sbjct: 243 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 302

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +N+LI+ LC+KG++  A ++L Q+ + GC P+S S+N ++  F  + + D+A +FL
Sbjct: 303 FNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 4/199 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +   Y   + G C   ++D+A     ++ +  D +   +LI GLC   R   A+ + D+M
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEM 186

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +    ++VTY  L+    ++ G   AM LL  +       +I  Y++V++G+C+ GR 
Sbjct: 187 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 246

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + L  L   G  P  V+YNI++ GLC      +A++L+ +M +KGC P+  +FN +
Sbjct: 247 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 306

Query: 187 IQGFLVKNETDRASSFLKK 205
           I     K   + A   L++
Sbjct: 307 ISFLCRKGLVEPALEVLEQ 325



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D AI+        G   +   Y+ ++ GLCT
Sbjct: 218 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 277

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A EL  +M  +G    +VT+N LI     K     A+ +L+ + +     N   
Sbjct: 278 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLS 337

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + ++A   LD +  +G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 338 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 397

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T  A   L +
Sbjct: 398 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 430



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       + +G   D+  Y++L+  LC    +  AVEL 
Sbjct: 334 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 393

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G    L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 394 HQLKDKGCAPVLISYNTVI-DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 452

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R E+A +   ++ + G+ P  V YN +I GLCK+     A  L   M   GC P+ ++
Sbjct: 453 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 512

Query: 183 FNTVIQGF----LVKNETD 197
           +  +I+G     L+K   D
Sbjct: 513 YTILIEGLAYEGLIKEARD 531



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+C     + A        +KG   +V  ++ LI+ LC    ++ A+E+ 
Sbjct: 264 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 323

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++   G +   ++YNPL+H   +++    AMA L  +       +I  Y+ ++  LCR 
Sbjct: 324 EQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 383

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  KG  PD  ++
Sbjct: 384 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 443

Query: 184 NTVIQGFLVKNETDRA 199
           +T+  G   ++  + A
Sbjct: 444 STIAAGLCREDRIEDA 459



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I+ +C+   ++ A+       K G   +   Y+ L++  C   ++ +A+   
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV++G   ++V+YN L+           A+ LL  L+       +  Y+ VIDGL + 
Sbjct: 359 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 418

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + L+++  KGL P ++TY+ +  GLC++  I +A +   ++++ G  P++  +
Sbjct: 419 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 478

Query: 184 NTVIQGFLVKNETDRA 199
           N +I G   + ET  A
Sbjct: 479 NAIILGLCKRRETHSA 494



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C+  E+D A++       KG    +  Y+++I+GL    + KEA+EL ++MV
Sbjct: 373 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 432

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +++TY+ +      +     A+     ++      N  +Y+ +I GLC+     
Sbjct: 433 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 492

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            A      +   G +P   TY ILI GL  +G+I EA  LL ++  +G
Sbjct: 493 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 7/201 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R       YG  I+G+ KI  +D A         KGI L+V VYSSLI+G     R+ E
Sbjct: 630 KRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  + ++M+ +G+T  + T+N L+    + +    A+   Q+++  K   N   YS++I+
Sbjct: 690 AYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILIN 749

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLCRV ++ +A     ++ ++GLVP VVTY  +I GL K G I +A  L  + K  G  P
Sbjct: 750 GLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTP 809

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           D+ SFN +I+G    N    A
Sbjct: 810 DAASFNALIEGMSHANRAIEA 830



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE  S      ++G  LD   Y+++++G C   
Sbjct: 556 DIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSG 615

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +L +A E+ ++M  + +   + TY  +I D   K  R   A  L +  +    ELN+ VY
Sbjct: 616 KLDKAYEVLEEMKVKRVPPTVATYGSII-DGLAKIDRLDEAYMLFEEAKSKGIELNVIVY 674

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 675 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKE 734

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P++ +++ +I G     + ++A  F ++
Sbjct: 735 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQE 766



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            + Y+++I G  +  + + A +L D++  +G    +V++N ++    +K+    A+ L +
Sbjct: 322 AYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE 381

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++D  E N   Y+++ID LC  G+ EEA    D++   GL P ++T NI+++ LCK  
Sbjct: 382 AMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAK 440

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               A ++     ++GC P+S ++ ++I G   K   D A
Sbjct: 441 KFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDA 480



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y + I  M + R+ + A++        G  + V ++++L+  L    R++ A
Sbjct: 177 KFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGA 236

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D++    +  ++V YN  I D + K G    A      L+    + +   Y+ +I 
Sbjct: 237 LALVDEVKGSCLEPDIVLYNVCI-DCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIW 295

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  EA +   Q+  +  VP    YN +I G    G    A KLL Q+KE+GC P
Sbjct: 296 VLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIP 355

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
              SFN+++     K + D A +  +
Sbjct: 356 SVVSFNSILTCLGKKRKVDEALTLFE 381



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK ++ +       +A ++G   +   Y SLI+GL     + +A  LF
Sbjct: 425 NLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLF 484

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+  G  A  V Y  LI + +    +     + + + R   + ++ + +  +D + + 
Sbjct: 485 ENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKA 544

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   + +   G +P V +Y+ILI+GL K G   E   +   MK++G   D+ ++
Sbjct: 545 GDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF    + D+A   L++
Sbjct: 605 NAVVDGFCKSGKLDKAYEVLEE 626



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NF ++G + +G    +E++   ++G   D+ + ++ ++ +     +++   +F+ +   G
Sbjct: 505 NFFMHGRKEDGHKIFKEMN---RRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYG 561

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ +Y+ LIH   +        ++   +++  + L+   Y+ V+DG C+ G+ ++A 
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAY 621

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++  K + P V TY  +I+GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 622 EVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 681

Query: 191 LVKNETDRASSFLKKNM 207
                 D A   L++ M
Sbjct: 682 GKVGRIDEAYLILEEMM 698



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           + L++ L    RL +A  +   M           Y  LI    E +    A+ LL+ ++ 
Sbjct: 151 ADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             YE+ + +++ ++  L R GR E A   +D++    L P +V YN+ I+   K G +  
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVI 187
           A K   ++K +G  PD  S+ ++I
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMI 294



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 9/211 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F+  ++  + N   Y I I+ +C   +++ A          G+  ++   + +++ LC  
Sbjct: 380 FEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKA 439

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            + + A E+F+    +G     VTY  LI D   K+G    A  L + +    +  N  V
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLI-DGLGKKGNVDDAYRLFENMLDTGHNANPVV 498

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I      GR E+  K   +++ +G  P +   N  ++ + K G + +   +   +K
Sbjct: 499 YTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIK 558

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             G  PD  S++ +I G     +    SS  
Sbjct: 559 GYGFLPDVRSYSILIHGLTKAGQARETSSIF 589



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E +   N + Y I ING+C++++ + A        K+G+  +V  Y+++I GL     
Sbjct: 732 MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGN 791

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A  LF++  A G T +  ++N LI           A  + +        +N++    
Sbjct: 792 ITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACIS 851

Query: 116 VIDGLCRVGRWEEA 129
           ++D L +    E+A
Sbjct: 852 LLDALNKAECLEQA 865


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C ++ +D  +K       +G+  +   YS L+ G C   ++K A ELF +MV+ G+
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TY  L+ D     G+   A+ + + L++ K +L I +Y+ +I+G+C+ G+ E+A 
Sbjct: 435 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                L  KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G  P+  ++NT+I+  
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 191 L 191
           L
Sbjct: 554 L 554



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y   I+ +C+   ID+AI        KGI   V  Y+SL+ GLC    
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TFN          +L+EA EL+ +M+ +GI+  ++TYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D +  Q R S A  +L  + R+K   +I  ++ +I G C V R ++  K    +S++
Sbjct: 339 LM-DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 397

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTY+IL+ G C+ G I  A++L  +M   G  PD  ++  ++ G     + ++A
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 113/204 (55%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ +   +   ING+C        +  +D  ++ G   D+  Y+S++NG+C       A 
Sbjct: 154 YEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAF 213

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           ++  KM  + + A++ TY+ +I D+  + G   +A++L + +E    + ++  Y+ ++ G
Sbjct: 214 DMLRKMEERNVKADVFTYSTII-DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G+W +    L  +  + +VP V+T+N+L++   K+G + EA++L  +M  +G  P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             ++NT++ G+ ++N    A++ L
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNML 356



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+  +       +   +K G   D   +++LINGLC   ++ +AV L 
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLV 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   ++VTYN +++          A  +L+ +E    + ++  YS +ID LCR 
Sbjct: 182 DRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A     ++  KG+   VVTYN L+ GLCK G   +   LL  M  +   P+  +F
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++  F+ + +   A+   K+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKE 323



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++    N   Y I + G C+  +I  A       +  G+  DV  Y  L++GLC   
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+F+ +    +   +V Y  +I    +      A  L  +L     + N+  Y+
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA   L ++ E G  P   TYN LI    + G +  + KL+ +MK  
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 572

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G   D++S   VI   L+  E D+  SFL
Sbjct: 573 GFSADASSIKMVID-MLLSGELDK--SFL 598



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 17/199 (8%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLING-LCTFNRLK---------EAVELFDKM 66
           +R + +C I    S+ ++        +SS+ NG +C   RL+         +A+ LF +M
Sbjct: 27  LRTDLLCTISSFLSSCERD-------FSSITNGNVCFRERLRSGIVDIKKDDAIALFQEM 79

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +       LV ++         +     +   + LE +    NI   +++I+  CR  + 
Sbjct: 80  IRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 139

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A   L ++ + G  P   T+N LINGLC +G + +A  L+ +M E GC PD  ++N++
Sbjct: 140 CFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSI 199

Query: 187 IQGFLVKNETDRASSFLKK 205
           + G     +T  A   L+K
Sbjct: 200 VNGICRSGDTSLAFDMLRK 218



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           GI  +++  + +IN  C   +   A  +  K++  G   +  T+N LI+     +G+ S 
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIN-GLCLEGKVSK 176

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L+  +  +  + ++  Y+ +++G+CR G    A   L ++ E+ +   V TY+ +I+
Sbjct: 177 AVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIID 236

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            LC+ G I  A  L  +M+ KG      ++N++++G 
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 273


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C ++ +D  +K       +G+  +   YS L+ G C   ++K A ELF +MV+ G+
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TY  L+ D     G+   A+ + + L++ K +L I +Y+ +I+G+C+ G+ E+A 
Sbjct: 435 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                L  KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G  P+  ++NT+I+  
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 191 L 191
           L
Sbjct: 554 L 554



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
           + E+  K +   Y   I+ +C+   ID+AI        KGI   V  Y+SL+ GLC    
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 52  ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
                                TFN          +L+EA EL+ +M+ +GI+  ++TYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D +  Q R S A  +L  + R+K   +I  ++ +I G C V R ++  K    +S++
Sbjct: 339 LM-DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 397

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLV   VTY+IL+ G C+ G I  A++L  +M   G  PD  ++  ++ G     + ++A
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++ G   DV  Y+S++NG+C       A++L  KM  + + A++ TY+ +I D+  
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-DSLC 239

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G   +A++L + +E    + ++  Y+ ++ GLC+ G+W +    L  +  + +VP V+
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           T+N+L++   K+G + EA++L  +M  +G  P+  ++NT++ G+ ++N    A++ L
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  C+  +       +   +K G   D   +++LI GL    ++ EAV L 
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   ++VTYN +++          A+ LL+ +E    + ++  YS +ID LCR 
Sbjct: 182 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A     ++  KG+   VVTYN L+ GLCK G   +   LL  M  +   P+  +F
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++  F+ + +   A+   K+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKE 323



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++    N   Y I + G C+  +I  A       +  G+  DV  Y  L++GLC   
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+F+ +    +   +V Y  +I    +      A  L  +L     + N+  Y+
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G   EA   L ++ E G  P   TYN LI    + G +  + KL+ +MK  
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 572

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G   D++S   VI   L+  E D+  SFL
Sbjct: 573 GFSADASSIKMVID-MLLSGELDK--SFL 598



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +++  + +IN  C   +   A  +  K++  G   +  T+N LI   + +     A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L+  +  +  + ++  Y+ +++G+CR G    A   L ++ E+ +   V TY+ +I+ 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LC+ G I  A  L  +M+ KG      ++N++++G 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 273



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 16  GIRINGMCKIREIDSAIKKGICLDVFVYSSLING-LCTFNRLK---------EAVELFDK 65
            +R + +C I    S+ ++        +SS+ NG +C   RL+         +A+ LF +
Sbjct: 26  SLRTDLLCTISSFFSSCERD-------FSSISNGNVCFRERLRSGIVDIKKDDAIALFQE 78

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+       LV ++         +     +   + LE +    NI   +++I+  CR  +
Sbjct: 79  MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 138

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A   L ++ + G  P   T+N LI GL  +G + EA  L+ +M E GC PD  ++N+
Sbjct: 139 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 198

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +T  A   L+K
Sbjct: 199 IVNGICRSGDTSLALDLLRK 218


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ++G CK+     A++       +G+  DV  +  LI+GLC F  +K A  LF
Sbjct: 251 NVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLF 310

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M+   +T  +  YN LI D + K G  S AMAL   LER +   ++  YS++I GLC 
Sbjct: 311 VNMIKFSVTPNIAVYNSLI-DAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V R EEA    ++++++G++   VTYN LI+G CK+G + +A ++  QM E G  P+  +
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429

Query: 183 FNTVIQGF 190
           F+T+I G+
Sbjct: 430 FSTLIDGY 437



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+  CK+ ++  A+       +  +  DVF YS LI GLC+ +R +EA  +F
Sbjct: 321 NIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIF 380

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +KM  +GI A  VTYN LI D   K+G+   A+ +   +  +  E N+  +S +IDG C+
Sbjct: 381 EKMTKEGILANSVTYNSLI-DGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +   + A     ++  K L P VVTY  +I+G CK G + EA KL   M + G  P+  +
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 183 FNTVIQGF 190
            + ++ G 
Sbjct: 500 ISCLLDGL 507



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 12/206 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFN 54
           E R KG      VY I I G+C   KI E +S  +     G+  +V+ Y++L++G C   
Sbjct: 207 EMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLA 266

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
             K+A+ L+  M+ +G+  ++VT+  LI D   K G   +A  L   + +     NI VY
Sbjct: 267 NAKQALRLYQDMLGEGLVPDVVTFGILI-DGLCKFGEMKAARNLFVNMIKFSVTPNIAVY 325

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +ID  C+VG   EA     +L    + P V TY+ILI GLC      EA  +  +M +
Sbjct: 326 NSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTK 385

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G   +S ++N++I G   + + D+A
Sbjct: 386 EGILANSVTYNSLIDGCCKEGKMDKA 411



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  I+G C+  ++       D    KGI   V VY+ LI GLC+ N+++EA  +   M 
Sbjct: 185 FGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMR 244

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+   + TYN L+    +      A+ L Q +  +    ++  + ++IDGLC+ G  +
Sbjct: 245 EVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMK 304

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            AR     + +  + P +  YN LI+  CK G + EA  L ++++     PD  +++ +I
Sbjct: 305 AARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILI 364

Query: 188 QGFLVKNETDRASSFLKK 205
           +G    + T+ A +  +K
Sbjct: 365 RGLCSVSRTEEAGNIFEK 382



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  +  I  G+   V  + +LI+G C    L  A E+FD+M  +GI   ++ Y  LI   
Sbjct: 168 RIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGL 227

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A ++ + +       N+  Y+ ++DG C++   ++A +    +  +GLVP V
Sbjct: 228 CSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDV 287

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VT+ ILI+GLCK G +  A  L V M +    P+   +N++I  +
Sbjct: 288 VTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAY 332



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T++    N   Y   I+G CK  ++D A++        G+  +V  +S+LI+G C    
Sbjct: 383 MTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRN 442

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ A+ ++ +MV + ++ ++VTY  +I  + +      A+ L   +  +    N    S 
Sbjct: 443 LQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISC 502

Query: 116 VIDGLCRVGRWEEA-------------RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           ++DGLC+ G+  +A             R  +D    K  +   V Y  LI+GLC+ G   
Sbjct: 503 LLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFS 562

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +A KL   M+  G  PD   +  +++G  
Sbjct: 563 KAVKLFSDMRRYGLQPDEVIYVVMLRGLF 591



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQT 100
           VY  LI  LC    ++EA+ ++ K+   G    +   N L++    K GRF  +  + + 
Sbjct: 117 VYGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLY-VLVKTGRFELLWRIYEE 172

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +  +    ++  +  +IDG CR G    A++  D++  KG+VP V+ Y ILI GLC    
Sbjct: 173 MISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNK 232

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I EA+ +   M+E G +P+  ++NT++ G+
Sbjct: 233 IEEAESMHRAMREVGVYPNVYTYNTLMDGY 262



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 53/95 (55%)

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           L I+  ++++  L + GR+E   +  +++   GL P V+T+  LI+G C++G ++ A ++
Sbjct: 145 LTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEM 204

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             +M+ KG  P    +  +I+G    N+ + A S 
Sbjct: 205 FDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESM 239


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + + I I+ +CK   I  A        K+G   D+  Y++L+ G C+   + EA ELF++
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV +G+  +++ YN LI    + +    AM L + L        I  Y+ +IDGLC  GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
               +K LD++      P VVTYNILI+ LCK+G I+EA  +LV M +KG  P+  ++N 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G+ ++N  + A     +
Sbjct: 446 MMDGYCLRNNVNVAKDIFNR 465



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 8/192 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CK   +D AI        K +  D+  Y+SLI+GLC   R+    EL D+M 
Sbjct: 478 YNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMC 537

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + +++TYN L+    + Q    A++L + +    +  +      ++D LC+  + +
Sbjct: 538 DSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP-DFYTNHAIVDNLCKGEKLK 596

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A   L  L   G  P V TY ILIN LCK G   EA  LL +M++    PD+ +F  +I
Sbjct: 597 MAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656

Query: 188 QGFLVKNETDRA 199
              L +NETD+A
Sbjct: 657 GVLLQRNETDKA 668



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I+G CK + +D A+        K +   +  Y+SLI+GLC   R+    +L D+M 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                 ++VTYN LI D   K+GR   A+ +L  + +   + NI  Y+ ++DG C     
Sbjct: 398 GSAQPPDVVTYNILI-DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A+   +++ + GL P ++ YN+LING CK  M+ EA  L  +M+ K   PD  S+N++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 187 IQGF 190
           I G 
Sbjct: 517 IDGL 520



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCK----IREID---SAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N   +   ING C      + +D   + + +G   D F Y +LINGL    ++K A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L  +M    +   LV Y+ LI D   K G  S A+ L   +      L+   Y+ +IDG
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALI-DGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C VGRW+E  + L ++  + + P   T+NILI+ LCK+G I+EA  +L  M ++G  PD
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +++G+  +     A     +
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNR 325



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +   + N  +Y   I+G+CK   +  A+       ++GI LD   Y+SLI+G C+  
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG 244

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
           R +E  +L  KMV + +  +  T+N LI D   K+GR   A  +L  + +   + +I  Y
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILI-DALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +++G C      EAR+  +++ ++GL P V+ YN+LI+G CK  M+ EA  L  ++  
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363

Query: 174 KGCFPDSTSFNTVIQGF 190
           K   P   S+N++I G 
Sbjct: 364 KNLVPTIASYNSLIDGL 380



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ING+ K  +I +A+       K  +  ++ +YS+LI+GLC    + +A+ L  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +GI  + VTYN LI D     GR+  +  LL  + R+  + +   ++++ID LC+ GR
Sbjct: 222 GERGILLDAVTYNSLI-DGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGR 280

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA+  L  +S++G  P +VTYN L+ G C +  + EA +L  +M ++G  PD  ++N 
Sbjct: 281 ILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNV 340

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+      D A    K+
Sbjct: 341 LIDGYCKTKMVDEAMVLFKE 360



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I  A+       KKG+  ++  Y+++++G C  N +  A ++F++M
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+  +++ YN LI+   + +    A+ L + +       +I  Y+ +IDGLC +GR 
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
              ++ LD++ + G  P V+TYNIL++  CK     +A  L  Q+ E G +PD  + + +
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAI 585

Query: 187 I 187
           +
Sbjct: 586 V 586



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLD----VF------VYSSLINGLCTFN 54
             RF G+F       N  C+ R +D A+    C +    VF      V+  L+  +    
Sbjct: 15  SSRFFGHFQPQNPHKN--CRFRNVDDAVT---CFNRMVRVFPPPPTSVFDKLLGAIVRMG 69

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A+ LF ++ ++GI+  + T+  LI+  + +     A +LL T+ +  Y+ N+  ++
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  G   +A      L  +G +    TY  LINGL K G I  A  LL +M++ 
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 175 GCFPDSTSFNTVIQGF 190
              P+   ++ +I G 
Sbjct: 190 SVQPNLVMYSALIDGL 205



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            N ++ A+  F   ++          NP  H N   +    A+     + R        V
Sbjct: 2   LNPIRYAIPKFS--ISSRFFGHFQPQNP--HKNCRFRNVDDAVTCFNRMVRVFPPPPTSV 57

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +  ++  + R+G +  A     QL  KG+ P + T+ ILIN    +     A  LL  + 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATIL 117

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           + G  P+  +FNT+I GF +     +A  F +
Sbjct: 118 KSGYQPNLVTFNTIINGFCINGMIFKALDFCQ 149


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G CK+  I +A K       + I  D   Y+++I GLC   ++ EA ++F+KM
Sbjct: 82  VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKM 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            ++G+  + VTY  LI D + K G    A +L   + +     N+  Y+ + DGLC++G+
Sbjct: 142 FSRGVEPDEVTYTTLI-DGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQ 200

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A + L ++  KGL   + TYN L+NGLCK G I +A KL+ +M+  G +PD+ +F T
Sbjct: 201 VDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT 260

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++  +    E  +A   L++
Sbjct: 261 LMDAYCKTGEMVKAHELLRE 280



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 43/212 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +     N   Y    +G+CK+ ++D+A         KG+ L++  Y+SL+NGLC    
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN 235

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++AV+L ++M   G+  + +T+  L                                  
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTL---------------------------------- 261

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +D  C+ G   +A + L ++ ++GL P V+T+N+L+NG C  GM+ + ++LL  M EKG
Sbjct: 262 -MDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             P++T++N++++ + ++N   R ++ + K M
Sbjct: 321 IMPNTTTYNSLMKQYCIRNNM-RCTTEIYKGM 351



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 92/169 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G   DV  YS++ING C    L++ ++L  +M  +G+   L TYN +I    +      
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L+ +       +  VY+ +IDG C++G  + A K  D++ ++ +VP  + Y  +I 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           GLC+ G +MEADK+  +M  +G  PD  ++ T+I G+    E ++A S 
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +NG C    ++         ++KGI  +   Y+SL+   C  N ++   E++  M
Sbjct: 292 TFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGM 351

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A+G+  +  TYN LI  + + +    A  L + +    + L    Y+ +I G  +  + 
Sbjct: 352 CARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKI 411

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
            EAR+  +++  +G+      YN+ ++
Sbjct: 412 SEARELFEEMRREGMAADAEIYNLFVD 438



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++  CK  E+  A       + +G+   V  ++ L+NG C    L++   L   M+ +GI
Sbjct: 262 MDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGI 321

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
                TYN L+     +        + + +       +   Y+++I G C+    +EA  
Sbjct: 322 MPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWF 381

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
              +++EKG      +YN +I G  KK  I EA +L  +M+ +G   D+  +N  +
Sbjct: 382 LHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFV 437



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y IR N  C          +G+  D   Y+ LI G C    +KEA  L  +M  +G    
Sbjct: 335 YCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLT 394

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
             +YN +I   ++K+    A  L + + R+    + E+Y+L +D     G  E A +  D
Sbjct: 395 ASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCD 454

Query: 135 QLSE 138
           +  E
Sbjct: 455 EAIE 458



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G  P VV+Y+ +ING C  G + +  KL+ +M+ KG  P+  ++N++I       + D 
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 199 ASSFLKK 205
           A   L++
Sbjct: 64  AERVLRE 70


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + + I I+ +CK   I  A        K+G   D+  Y++L+ G C+   + EA ELF++
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV +G+  +++ YN LI    + +    AM L + L        I  Y+ +IDGLC  GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
               +K LD++      P VVTYNILI+ LCK+G I+EA  +LV M +KG  P+  ++N 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G+ ++N  + A     +
Sbjct: 446 MMDGYCLRNNVNVAKDIFNR 465



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 8/192 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CK   +D AI        K +  D+  Y+SLI+GLC   R+    EL D+M 
Sbjct: 478 YNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMC 537

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + +++TYN L+    + Q    A++L + +    +  +      ++D LC+  + +
Sbjct: 538 DSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP-DFYTNHAIVDNLCKGEKLK 596

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A   L  L   G  P V TY ILIN LCK G   EA  LL +M++    PD+ +F  +I
Sbjct: 597 MAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656

Query: 188 QGFLVKNETDRA 199
              L +NETD+A
Sbjct: 657 GVLLQRNETDKA 668



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I+G CK + +D A+        K +   +  Y+SLI+GLC   R+    +L D+M 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                 ++VTYN LI D   K+GR   A+ +L  + +   + NI  Y+ ++DG C     
Sbjct: 398 GSAQPPDVVTYNILI-DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A+   +++ + GL P ++ YN+LING CK  M+ EA  L  +M+ K   PD  S+N++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 187 IQGF 190
           I G 
Sbjct: 517 IDGL 520



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCK----IREID---SAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N   +   ING C      + +D   + + +G   D F Y +LINGL    ++K A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L  +M    +   LV Y+ LI D   K G  S A+ L   +      L+   Y+ +IDG
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALI-DGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C VGRW+E  + L ++  + + P   T+NILI+ LCK+G I+EA  +L  M ++G  PD
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +++G+  +     A     +
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNR 325



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +   + N  +Y   I+G+CK   +  A+       ++GI LD   Y+SLI+G C+  
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG 244

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
           R +E  +L  KMV + +  +  T+N LI D   K+GR   A  +L  + +   + +I  Y
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILI-DALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +++G C      EAR+  +++ ++GL P V+ YN+LI+G CK  M+ EA  L  ++  
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363

Query: 174 KGCFPDSTSFNTVIQGF 190
           K   P   S+N++I G 
Sbjct: 364 KNLVPTIASYNSLIDGL 380



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L  Q +  +   YG  ING+ K  +I +A+       K  +  ++ +YS+LI+GLC   
Sbjct: 150 NLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDG 209

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
            + +A+ L  ++  +GI  + VTYN LI D     GR+  +  LL  + R+  + +   +
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLI-DGCCSVGRWQEVTQLLTKMVRENVDPDDYTF 268

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++ID LC+ GR  EA+  L  +S++G  P +VTYN L+ G C +  + EA +L  +M +
Sbjct: 269 NILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  PD  ++N +I G+      D A    K+
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKE 360



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I  A+       KKG+  ++  Y+++++G C  N +  A ++F++M
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+  +++ YN LI+   + +    A+ L + +       +I  Y+ +IDGLC +GR 
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
              ++ LD++ + G  P V+TYNIL++  CK     +A  L  Q+ E G +PD  + + +
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAI 585

Query: 187 IQGFLVKNETDRASSFLK 204
           +       +   A   LK
Sbjct: 586 VDNLCKGEKLKMAEDALK 603



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLD----VF------VYSSLINGLCTFN 54
             RF G+F       N  C+ R +D A+    C +    VF      V+  L+  +    
Sbjct: 15  SSRFFGHFQPQNPHKN--CRFRNVDDAVT---CFNRMVRVFPPPPTSVFDKLLGAIVRMG 69

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A+ LF ++ ++GI+  + T+  LI+  + +     A +LL T+ +  Y+ N+  ++
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  G   +A      L  +G +    TY  LINGL K G I  A  LL +M++ 
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 175 GCFPDSTSFNTVIQGF 190
              P+   ++ +I G 
Sbjct: 190 SVQPNLVMYSALIDGL 205



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 4/150 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            N ++ A+  F   ++          NP  H N   +    A+     + R        V
Sbjct: 2   LNPIRYAIPKFS--ISSRFFGHFQPQNP--HKNCRFRNVDDAVTCFNRMVRVFPPPPTSV 57

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +  ++  + R+G +  A     QL  KG+ P + T+ ILIN    +     A  LL  + 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATIL 117

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           + G  P+  +FNT+I GF +     +A  F
Sbjct: 118 KSGYQPNLVTFNTIINGFCINGMIFKALDF 147



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y I ++  CK +  D AI       +GI  D +   ++++ LC   +LK A +    ++
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLL 606

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G +  + TY  LI +   K G F  AM LL  +E +    +   + ++I  L +    
Sbjct: 607 MHGCSPNVQTYTILI-NALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNET 665

Query: 127 EEARKKLDQLSEKGLV 142
           ++A K  +++  +GLV
Sbjct: 666 DKAEKLREEMIARGLV 681


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 9/209 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E++   +   Y   ++G CK+ ++D A       + +     V  Y++LI G    +R
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR 317

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L +A  + + M   GI+ +LVTYN L+ D   K G+   A  LL+ +       ++  YS
Sbjct: 318 LADAYRVMEDMFKAGISPDLVTYNCLL-DGLCKAGKLEEAHELLEVMVEKDCAPDVVTYS 376

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GLC++G+ ++AR  L+ + E+G  P +VT+N +I+G CK G + E  K+L  MKE 
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C PD  +++T+I G+   N    A + L
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAIL 465



 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I+K    DV  Y+SL++G C  +++ EA  L + MV +     ++TY  LI   + 
Sbjct: 255 LEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIG-GFS 313

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           +  R + A  +++ + +     ++  Y+ ++DGLC+ G+ EEA + L+ + EK   P VV
Sbjct: 314 RADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVV 373

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           TY+IL+NGLCK G + +A  LL  M E+GC P+  +FNT+I GF    + D     L+
Sbjct: 374 TYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE 431



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 11/201 (5%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           + L ++  + + H    VY   I G+CK+ +ID+A       +++    DV  Y+SLI G
Sbjct: 112 YQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVG 171

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            C  N L EA +L +KM   G+T + V YN L++   ++        LL+ +     E +
Sbjct: 172 CCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPD 231

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y+ V+  LC  G++EEA K L+++ EK   P VVTYN L++G CK   + EA++LL 
Sbjct: 232 TFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLE 291

Query: 170 QMKEKGCFPDSTSFNTVIQGF 190
            M  + C P   ++ T+I GF
Sbjct: 292 DMVGRRCAPTVITYTTLIGGF 312



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 14  VYGIRINGMCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
            Y   I+G CK   +  A    GI  D   YSS++ GLC+  +++EA E+ D M  QG  
Sbjct: 444 TYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCP 503

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
                Y  +I    + +    A+ +LQ +     E N+  YS++I+GLC+  R E+A   
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           LD + EKG VP V TY  LI+G CK   +  A +    M++ GC PD  ++N +I GF  
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623

Query: 193 KNETDRA 199
               ++A
Sbjct: 624 SGNVEKA 630



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRL 56
           ++  +RF  +   +   +   C+I ++D A+     K       F Y  LI+GLC   R+
Sbjct: 49  EMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRI 108

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM--ALLQTLERDKYELNIEVYS 114
            EA +L D+M+ +    +   YN LI     K G+  A    L   LER     ++  Y+
Sbjct: 109 DEAYQLLDEMIQKDCHPDAAVYNCLIA-GLCKMGKIDAARNVLKMMLERSCVP-DVITYT 166

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+    +EARK ++++ E GL P  V YN L+NGLCK+  + E  KLL +M E 
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+ S+NTV+       + + A   L+K
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEK 257



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 13/209 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNR 55
           + E+  + N   +   I+G CK  ++D        +K+  C  DV  YS+LI+G C  NR
Sbjct: 398 MLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANR 457

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A  +       GI+ +  +Y+ ++           A  ++  + +         Y+L
Sbjct: 458 MQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYAL 511

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC V R +EA K L  +SE+G  P + TY+ILINGLCK   + +A  +L  M EKG
Sbjct: 512 IIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKG 571

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           C PD  ++ ++I GF   N+ D A    K
Sbjct: 572 CVPDVATYTSLIDGFCKINKMDAAYQCFK 600



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+C+ + ID A       I+K    D  VY+ LI GLC   ++  A  +   M
Sbjct: 94  TYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMM 153

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +    +++TY  LI    +      A  L++ ++      +   Y+ +++GLC+  + 
Sbjct: 154 LERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQL 213

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EE  K L+++ E G  P   +YN ++  LC+ G   EA K+L +M EK C PD  ++N++
Sbjct: 214 EEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSL 273

Query: 187 IQGFLVKNETDRASSFLK 204
           + GF   ++ D A   L+
Sbjct: 274 MDGFCKVSKMDEAERLLE 291



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E     +   Y   +NG+CK  +++         ++ G   D F Y++++  LC   +
Sbjct: 188 MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK 247

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +EA ++ +KM+ +    ++VTYN L+    +      A  LL+ +   +    +  Y+ 
Sbjct: 248 YEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTT 307

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G  R  R  +A + ++ + + G+ P +VTYN L++GLCK G + EA +LL  M EK 
Sbjct: 308 LIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD 367

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           C PD  +++ ++ G     + D A   L+
Sbjct: 368 CAPDVVTYSILVNGLCKLGKVDDARLLLE 396



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 6/178 (3%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++   K GI  D+  Y+ L++GLC   +L+EA EL + MV +    ++VTY+ L++  
Sbjct: 323 RVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            +      A  LL+ +     + N+  ++ +IDG C+ G+ +E  K L+ + E    P V
Sbjct: 383 CKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDV 442

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           VTY+ LI+G CK   + +A  +L      G  PD  S++++++G     + + A   +
Sbjct: 443 VTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVM 494



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 42/195 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T+Q        Y + I G+C +   D A+K       +G   +++ YS LINGLC   R
Sbjct: 497 MTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKR 556

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A+ + D M+ +G   ++ TY  L                                  
Sbjct: 557 VEDAINVLDVMLEKGCVPDVATYTSL---------------------------------- 582

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            IDG C++ + + A +    + + G  P  + YNILI+G C+ G + +A +++  M EKG
Sbjct: 583 -IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKG 641

Query: 176 CFPDSTSFNTVIQGF 190
           C PD+ ++ ++++  
Sbjct: 642 CNPDAATYFSLMRSL 656


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N   Y I I G+C+ +++D A       I  G   +V  Y SL++GLC   +
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           LKEAV+LF +MV +G   + V YN LI D + K+G    A  L + +        +  Y+
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLI-DGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G  R G +   +     +  +G VP + T+N L++G CK G ++EA +L ++M+  
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  S+NT+I+G   K +   A   L++
Sbjct: 257 GCPPDVVSYNTLIRGMCSKGKPHEAQRLLRE 287



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           HVYG            +  +  G   + + Y  L+  LC   R +EA  +F  M AQG +
Sbjct: 35  HVYGT----------YNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCS 84

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             + +Y+ LI      Q    A  LL  +    ++ N+  Y  ++ GLC++G+ +EA   
Sbjct: 85  PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
             ++  +G  P  V YN+LI+G  KKG + EA +L  +M EKGC P   ++N+++ GF  
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 193 KNETDRASSFLK 204
           K E  R  S  K
Sbjct: 205 KGEFGRVQSLFK 216



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  L    R       ++ M+A G      TY  L+    + Q    A ++ + + 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 N+  YS++I GLCR  + +EA + L+++ + G  P VVTY  L++GLCK G + 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EA  L  +M  +GC PD   +N +I GF  K +   A
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++G   ++F +++L++G C    + EA  LF +M + G   ++V+YN LI     K   
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKP 278

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  LL+ + R     +I  Y+++IDG  + G  + A K   ++ + GL P   +Y+ +
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTI 338

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+ LC+ G +  A  +   M   G  PD+     ++ G 
Sbjct: 339 IDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL 377



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 9/204 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           D+  Q    N   +   ++G CK+ ++  A +        G   DV  Y++LI G+C+  
Sbjct: 217 DMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKG 276

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +  EA  L  +M+  G+  ++V+YN LI D + K G    A+ L   + +   E +   Y
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILI-DGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +ID LCR G+   A      +   G  P       L+ GLC+   + E+ +L   M +
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 174 KGCFPDSTSFNTVIQGFLVKNETD 197
             C P    +N ++        +D
Sbjct: 396 FECVPLIPEYNLLMYKLCKAKRSD 419



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +++ L + GR +      + +   G VP   TY  L+  LC+     EA  +   M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +GC P+  S++ +I G     + D A+  L +
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNE 112


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           RFK +  VY   I+GMCK   I+ AIK        G+  +V  YS +IN LC    ++ A
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF +M  +G  A + T+ PLI   + +   + A+ L + + +D  E N+  Y+ +I G
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  G  EEA +  DQ+   G +P V TY+ILI+G  K G ++ A +   +M   GC P+
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  ++      +  D+A+S ++K
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEK 444



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+  +VF Y+ L+  LC  +R+  A +LF +M  +G   + VTY  ++  +  K G+ 
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMV-SSLCKAGKI 230

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                L      +++ ++ VY+ +IDG+C+ GR E A K L ++ + G+ P VV+Y+ +I
Sbjct: 231 DDARELA----GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           N LC  G +  A  L  QM  +GC  +  +F  +I+G  ++ +   A    K
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 8/205 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++ +CK    D A         +G   +   +++ I GLC   R++ A++
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M   G    + TYN L+   +       A  L Q +E    + N+  Y+ V+ G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-KGCFPDS 180
           R G   EA +   +   +G  P  +TYN +I+  CK+G +  A +L+ ++   K   PD 
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDI 595

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++ ++I G       + A +FL K
Sbjct: 596 ITYTSLIWGACNWMNIEEAMAFLDK 620



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C D+F+   +ING       ++A+++F ++   G    +  YN L+ D    + +F  + 
Sbjct: 108 CEDLFI--CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLL-DALLSENKFQMIN 164

Query: 97  LLQT-LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L T +++D    N+  Y++++  LC+  R + A K   ++S KG  P  VTY  +++ L
Sbjct: 165 PLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           CK G I +A +L  + K     P    +N +I G   +   + A   L + M
Sbjct: 225 CKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEMM 271



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C    ++ A+K        G   ++  Y+ L++ L   N+ +EA  LF ++ A+ +
Sbjct: 461 IKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNL 520

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
              LVTYN +++  + + G    A+ L  + L R     +I  Y+ +I   C+ G+ + A
Sbjct: 521 QPNLVTYNTVLY-GFSRAGMMGEALQLFGKALVRGTAPDSI-TYNTMIHAYCKQGKVKIA 578

Query: 130 RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            + ++++S  K   P ++TY  LI G C    I EA   L +   +G  P+  ++N +++
Sbjct: 579 AQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638

Query: 189 GFL 191
            F 
Sbjct: 639 CFF 641



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  Y+SLI G C +  ++EA+   DK + QGI     T+N L+   ++  G    + +L
Sbjct: 594 DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHIL 653

Query: 99  QTLER 103
             + R
Sbjct: 654 DDILR 658


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           RFK +  VY   I+GMCK   I+ AIK        G+  +V  YS +IN LC    ++ A
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF +M  +G  A + T+ PLI   + +   + A+ L + + +D  E N+  Y+ +I G
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  G  EEA +  DQ+   G +P V TY+ILI+G  K G ++ A +   +M   GC P+
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  ++      +  D+A+S ++K
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEK 444



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+  +VF Y+ L+  LC  +R+  A +LF +M  +G   + VTY  ++  +  K G+ 
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMV-SSLCKAGKI 230

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                L      +++ ++ VY+ +IDG+C+ GR E A K L ++ + G+ P VV+Y+ +I
Sbjct: 231 DDARELA----GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           N LC  G +  A  L  QM  +GC  +  +F  +I+G  ++ +   A    K
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 8/205 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++ +CK    D A         +G   +   +++ I GLC   R++ A++
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M   G    + TYN L+   +       A  L Q +E    + N+  Y+ V+ G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-KGCFPDS 180
           R G   EA +   +   +G  P  +TYN +I+  CK+G +  A +L+ ++   K   PD 
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDI 595

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++ ++I G       + A +FL K
Sbjct: 596 ITYTSLIWGACNWMNIEEAMAFLDK 620



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C D+F+   +ING       ++A+++F ++   G    +  YN L+ D    + +F  + 
Sbjct: 108 CEDLFI--CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLL-DALLSENKFQMIN 164

Query: 97  LLQT-LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L T +++D    N+  Y++++  LC+  R + A K   ++S KG  P  VTY  +++ L
Sbjct: 165 PLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           CK G I +A +L  + K     P    +N +I G   +   + A   L + M
Sbjct: 225 CKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEMM 271



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   I G+C    ++ A+K        G   ++  Y+ L++ L   N+ +EA  LF
Sbjct: 453 NTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLF 512

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL-QTLERDKYELNIEVYSLVIDGLC 121
            ++ A+ +   LVTYN +++  + + G    A+ L  + L R     +I  Y+ +I   C
Sbjct: 513 QEIEARNLQPNLVTYNTVLY-GFSRAGMMGEALQLFGKALVRGTAPDSI-TYNTMIHAYC 570

Query: 122 RVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           + G+ + A + ++++S  K   P ++TY  LI G C    I EA   L +   +G  P+ 
Sbjct: 571 KQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNF 630

Query: 181 TSFNTVIQGFL 191
            ++N +++ F 
Sbjct: 631 ATWNALVRCFF 641



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  Y+SLI G C +  ++EA+   DK + QGI     T+N L+   ++  G    + +L
Sbjct: 594 DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHIL 653

Query: 99  QTLER 103
             + R
Sbjct: 654 DDILR 658


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G  K + +  A+       + G    V  Y++L +GLC   R  EAVE+ D M
Sbjct: 615 TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM 674

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKY-ELNIEVYSLVIDGLCRVG 124
            A+G     +TY+ ++ D   K GR + A+   + + RD+    ++  YS +IDGLC+ G
Sbjct: 675 AARGCAPNAITYSSIV-DGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 733

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +EA + L+++   G +P VVT++ILINGLC  G I    +L   M E+GC  D  ++N
Sbjct: 734 RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I  + +K E   A + L++
Sbjct: 794 AMINAYCLKGEFSAAYALLEE 814



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 111/209 (53%), Gaps = 8/209 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E+  + N   Y   I+G+ K+ ++D A       ++ G   +   YS++++GL    R++
Sbjct: 536 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 595

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +AV +  +M   G   + VTYN LI   +++Q    A+ LL+ +    +  ++  Y+ + 
Sbjct: 596 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 655

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGC 176
            GLCR GR++EA + LD ++ +G  P  +TY+ +++GLCK G + EA     +M +++  
Sbjct: 656 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 715

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P   +++ +I G       D A  FL++
Sbjct: 716 APHVIAYSALIDGLCKAGRIDEAYEFLER 744



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 4/196 (2%)

Query: 11  NFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           N  V G+  +GM +  +  ++  I+ G+  DV  ++S+++GLC   R+ +A  +F + + 
Sbjct: 477 NTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE 536

Query: 69  QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +G    +VTY+ LI D   K  +   A+ LL  +       N   YS V+DGL +VGR E
Sbjct: 537 RGCRPNVVTYSTLI-DGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 595

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   L Q+ + G +P  VTYN LI+G  K+  + EA  LL +M E G  P   ++ T+ 
Sbjct: 596 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 655

Query: 188 QGFLVKNETDRASSFL 203
            G       D A   L
Sbjct: 656 HGLCRSGRFDEAVEIL 671



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING+CK  R  D+      AI+ G    V  YS++I+GLC  N + +  +L ++M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G     VTYN L+ +    QGR   A +LL+ +  +     +  + L+I GLC+ G 
Sbjct: 63  AGRGCAPNAVTYNTLV-NALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A + +D++ ++G VP V  + +L++ LC+ G + EA     Q+   G  PD+ ++NT
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 186 VIQGFLVKNETDRASSFLK 204
           ++ G       + A   L+
Sbjct: 182 MVDGLYKAGRLEAAGMVLQ 200



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 12/199 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +G+ I G+CK  EI++A       + +G   DV +++ L++ LC   R+ EA   F ++
Sbjct: 108 TFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQV 167

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G T + VTYN ++ D   K GR  A  + LQ L        +  +++ +DGL + G 
Sbjct: 168 LLIGFTPDAVTYNTMV-DGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGN 226

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A +  D + + G+ P  VTY+ LI+GLCK G +   D  L  +++K       +F++
Sbjct: 227 LTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKL---DIALGLLRDKNSQAGMFAFSS 283

Query: 186 VIQGFLVKNETDRASSFLK 204
           ++ G    +  + A   LK
Sbjct: 284 LLHGLCQAHRLEEAIQLLK 302



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 115/236 (48%), Gaps = 31/236 (13%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLC 51
           FD + E     +   Y I + G+CK+R I  A +        +G   +V  +S+LI GLC
Sbjct: 333 FDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLC 392

Query: 52  TFNRLKEAVELFDKMVA-QGITAELVTYNPLI----------------HDNWEKQGRFSA 94
              R+ +A E++++MVA +GI+    TY  L+                    E++ R S+
Sbjct: 393 NAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSS 452

Query: 95  MALLQTLERDKYELNI-----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              + + E D   + +       Y+ ++ GL + G   +A   L+ + E GL P V+T+N
Sbjct: 453 SWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFN 512

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +++GLCK+  I++A  +  +  E+GC P+  +++T+I G     + D A   L K
Sbjct: 513 SVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 568



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+     Y   I+G+C+  E+D   K       +G   +   Y++L+N L    R KEA 
Sbjct: 32  FRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAF 91

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
            L ++M A G   EL+T+  LI     K+G   +A  ++  +    +  ++E++++++  
Sbjct: 92  SLLERMAANGCPPELITFG-LIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHA 150

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC +GR +EA     Q+   G  P  VTYN +++GL K G +  A  +L  + E    P 
Sbjct: 151 LCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPT 210

Query: 180 STSFNTVIQGF 190
             +F   + G 
Sbjct: 211 VFTFTIAVDGL 221



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 11/200 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   ID A       I+ G   DV  +S LINGLC   R+   +ELF  M
Sbjct: 721 AYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGM 780

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G  A++  YN +I + +  +G FSA  ALL+ ++      N   + +VI  LC   R
Sbjct: 781 AERGCKADIYAYNAMI-NAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA      + E       ++YN LI  L       +A +LL  M   G  PD+ ++ T
Sbjct: 840 IDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMT 897

Query: 186 VIQGFLVKNETDRASSFLKK 205
           V+ G       + A+  L++
Sbjct: 898 VMDGLFKAGSPEVAAKLLQE 917



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E         + I ++G+ K   +       DS  + G+  +   Y +LI+GLC   +
Sbjct: 202 LAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGK 261

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A+ L     +Q   A +  ++ L+H   +      A+ LL+ +       N+  ++ 
Sbjct: 262 LDIALGLLRDKNSQ---AGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVP---NVVCFNS 315

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-K 174
           +++GLC+  R +EA +  D + E G    V+TYNIL+ GLCK   I EA + +  M+  +
Sbjct: 316 LMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTE 375

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+  +F+T+IQG       ++A
Sbjct: 376 GCSPNVVTFSTLIQGLCNAGRVNQA 400



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   +   I G+C    ++ A +        +GI  + F Y+ L+ GLC     +   + 
Sbjct: 380 NVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQC 439

Query: 63  FDKMV---------------------AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
           F++M+                      Q     LVTYN L+     K G    A+ LL+ 
Sbjct: 440 FEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLV-TGLSKSGMVRDALGLLEF 498

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  ++ V+DGLC+  R  +A     +  E+G  P VVTY+ LI+GL K   
Sbjct: 499 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 558

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA +LL +M E GC  ++ +++TV+ G L     + A   L++
Sbjct: 559 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 603



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K + + Y   IN  C   E  +A          GI  +   +  +I  LC  +R
Sbjct: 780 MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EAV  F  +       + ++YN LI      +    A+ LL+ +  D    +   Y  
Sbjct: 840 IDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMT 897

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+DGL + G  E A K L ++  +G  P + TY I+I+GL K   +  A     +M  K 
Sbjct: 898 VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             PD+  ++++I  F   ++ D A   L+ +
Sbjct: 958 LKPDAIVYSSLIDAFCKADKVDDAWKLLRSS 988



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 8/200 (4%)

Query: 11   NFHVYGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            N   +GI I  +C    ID A+         C D   Y++LI  L    R ++A+EL   
Sbjct: 823  NTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRA 882

Query: 66   MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            MVA G + +   Y  ++   ++      A  LLQ +    +  ++  Y+++I GL +  +
Sbjct: 883  MVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQ 942

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
               A    +++  K L P  + Y+ LI+  CK   + +A KLL   +  G  P  T ++T
Sbjct: 943  LPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIEPTITMYST 999

Query: 186  VIQGFLVKNETDRASSFLKK 205
            ++        TD+A   +++
Sbjct: 1000 MVDSLCKNRGTDKALEVIRE 1019



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 56/94 (59%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+GLC+ GR  +A     +  + G  P VVTY+ +I+GLC+   + +  KLL +M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +GC P++ ++NT++   L +     A S L++
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLER 96



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +VTYN+LINGLCK G + +A     +  + G  P   +++TVI G    NE D+    L+
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 205 K 205
           +
Sbjct: 61  E 61



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
             +G   D+  Y+ +I+GL    +L  A + F++M+ + +  + + Y+ LI    +     
Sbjct: 920  SRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVD 979

Query: 93   SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             A  LL++      E  I +YS ++D LC+    ++A + + ++  K   PG+  +  L 
Sbjct: 980  DAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLA 1036

Query: 153  NGLCKKGMIMEADKLL 168
                 +G + EA KL+
Sbjct: 1037 TAYVAEGRVDEAVKLV 1052


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 115/209 (55%), Gaps = 9/209 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y + I  +C    ID A       I +G   +V  Y+ LI+GLC   +
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGK 351

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           ++EA  +  KMV  GI   ++TYN LI + + K GR   A  LL  +E+   + N+  ++
Sbjct: 352 IEEANGVCRKMVKDGIFPSVITYNALI-NGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLCRVG+  +A   L ++ + GL P +V+YN+LI+GLC++G +  A KLL  M   
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSF 470

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              PD  +F  +I  F  + + D AS+FL
Sbjct: 471 DLEPDCLTFTAIINAFCKQGKADVASAFL 499



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFV-YSSLINGLCTFNRLKEAVELFD 64
           H+    + G C+   +  A+K       +G C    V YS LI+GLC   RL+EA  L D
Sbjct: 231 HIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  +G      TY  LI    ++     A  L   +     + N+  Y+++IDGLCR G
Sbjct: 291 QMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDG 350

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + EEA     ++ + G+ P V+TYN LING CK G ++ A +LL  M+++ C P+  +FN
Sbjct: 351 KIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +++G     +  +A   LK+
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKR 431



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N H Y + I+G+C+  +I+ A       +K GI   V  Y++LING C   R+  A E
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L   M  +     + T+N L+         + A+ LL+ +  +    +I  Y+++IDGLC
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    A K L  ++   L P  +T+  +IN  CK+G    A   L  M  KG   D  
Sbjct: 453 REGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 182 SFNTVIQG 189
           +  T+I G
Sbjct: 513 TGTTLIDG 520



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CK  + D A       ++KGI LD    ++LI+G+C   + ++A+ + + +V   +
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRM 542

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
                + N +I D   K  +    +A+L  + +     ++  Y+ ++DGL R G    + 
Sbjct: 543 LTTPHSLN-VILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSF 601

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+ +   G +P V  Y I+INGLC+ G + EA+KLL  M++ G  P+  ++  +++G+
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661

Query: 191 LVKNETDRA 199
           +   + DRA
Sbjct: 662 VNNGKLDRA 670



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 52/234 (22%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G+ +  +I  + +        G   +V+ Y+ +INGLC F R++EA +L   M 
Sbjct: 584 YTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ 643

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG--LCRVG 124
             G++   VTY  ++   +   G+   A+  ++ +    YELN  +YS ++ G  L + G
Sbjct: 644 DSGVSPNHVTYTVMVK-GYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKG 702

Query: 125 RWE---EARKKLDQLSEK--GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-- 177
             E   E  K+L  + E+  G   G+  +  L+  LCK+G   E++ L+  + + G F  
Sbjct: 703 IRETDPECIKELISVVEQLGGSTSGLCIF--LVTRLCKEGRTDESNGLVQTILKSGVFLE 760

Query: 178 --------------------------------PDSTSFNTVIQGFLVKNETDRA 199
                                           P   SF  VIQG   + +T+RA
Sbjct: 761 KAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERA 814



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 36/144 (25%)

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE------------------------ 127
           F A    + +E D + + +  Y  +++ LC+ G  E                        
Sbjct: 177 FLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSL 236

Query: 128 -----------EARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
                      +A K  D +S +G   P  V+Y+ILI+GLC+ G + EA  L  QM EKG
Sbjct: 237 LLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG 296

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C P + ++  +I+    +   D+A
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKA 320



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 41/89 (46%)

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E   + LN   YS ++  L ++     A     ++   G V G++ Y  ++N LCK G  
Sbjct: 152 EVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYT 211

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             A+  + ++ + G   DS    +++ GF
Sbjct: 212 EAAEMFMCKILKVGFLLDSHIVTSLLLGF 240


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   YG  +NG+CK       IR + S ++K    +V  Y+++I+ LC   ++ EA 
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +M+ +GI+ ++ TYN LIH             LL  +   K   N+ V+S V+D L
Sbjct: 273 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 332

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G    A   +D + ++G+ P VVTY  L++G C +  + EA K+   M  KGC P+ 
Sbjct: 333 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 392

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            S+N +I G+      D+A   L++
Sbjct: 393 RSYNILINGYCQIQRMDKAMGLLEQ 417



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   +   N  V+   ++ +CK   I       D  IK+G+  DV  Y++L++G C  +
Sbjct: 312 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS 371

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EAV++FD MV +G    + +YN LI+   + Q    AM LL+ +       +   Y+
Sbjct: 372 EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYN 431

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VGR + A     ++   G +P +VTY IL++ LCK   + EA  LL  ++  
Sbjct: 432 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 491

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
               D   +N  I G     E + A
Sbjct: 492 NLDADILVYNIAIDGMCRAGELEAA 516



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 7/137 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING C+I+ +D A+        +G+  D   Y++LI+GLC   RL+ A+ LF
Sbjct: 391 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 450

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AM LL+ +E    + +I VY++ IDG+CR 
Sbjct: 451 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 510

Query: 124 GRWEEARKKLDQLSEKG 140
           G  E AR     LS +G
Sbjct: 511 GELEAARDLFSNLSCQG 527



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 43/235 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  + N   Y   I+ +CK R++  A       I KGI  D+F Y+SLI+ LC    
Sbjct: 243 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 302

Query: 56  LKEAVELF-----------------------------------DKMVAQGITAELVTYNP 80
            K    L                                    D M+ +G+  ++VTY  
Sbjct: 303 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 362

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L+  +  +     A+ +  T+       N+  Y+++I+G C++ R ++A   L+Q+S +G
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 422

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           L+   VTYN LI+GLC  G +  A  L  +M   G  PD  ++  ++  +L KN 
Sbjct: 423 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLD-YLCKNH 476



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I IN  C +R +  A       +K G   D   +++LI GLC   ++ EA+ LF
Sbjct: 146 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 205

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DK + +G   ++VTY  L++   +     +A+ LL+++ +     N+  Y+ +ID LC+ 
Sbjct: 206 DKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 265

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILIN------------------------------ 153
            +  EA     ++  KG+ P + TYN LI+                              
Sbjct: 266 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 325

Query: 154 -----GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 LCK+GMI  A  ++  M ++G  PD  ++  ++ G  +++E D A
Sbjct: 326 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 376



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+  + LIN  C   RL  A  +  K++  G   +  T+N LI     +     A
Sbjct: 142 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 201

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L      + ++ ++  Y  +++GLC+VG    A + L  + +K   P V+ YN +I+ 
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 261

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK   + EA  L  +M  KG  PD  ++N++I       E    ++ L +
Sbjct: 262 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 312



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 7/168 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C   E+D A+K       KG   +V  Y+ LING C   R+ +A+ L ++M 
Sbjct: 360 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 419

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG+ A+ VTYN LIH          A+AL   +       ++  Y +++D LC+     
Sbjct: 420 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLA 479

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           EA   L  +    L   ++ YNI I+G+C+ G +  A  L   +  +G
Sbjct: 480 EAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+  +         + L  +M + GI  ++ T N LI+     +    A ++L  L 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 174

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +   + +   ++ +I GLC  G+  EA    D+   +G  P VVTY  L+NGLCK G   
Sbjct: 175 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 234

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            A +LL  M +K C P+  ++NT+I   
Sbjct: 235 AAIRLLRSMVQKNCRPNVIAYNTIIDSL 262



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           FN L +A+  F++M+        V +  L+  +  K   +S +  L T + D + +  +V
Sbjct: 90  FNTLDDALSSFNRMLHMHPPPSTVDFTKLL-TSIAKMKHYSTVLSLST-QMDSFGIPPDV 147

Query: 113 YSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           Y+L  +I+  C + R   A   L +L + G  P   T+N LI GLC +G I EA  L  +
Sbjct: 148 YTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDK 207

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +G  PD  ++ T++ G      T  A   L+ 
Sbjct: 208 TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 242



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  + ++  +        Q+   G+ P V T NILIN  C    +  A  +L ++ 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 174

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           + GC PD+T+FNT+I+G  V+ +   A     K +
Sbjct: 175 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 209


>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 302

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK + +D A+        K +  D+  YSSLI+GLC   ++ +  +L D M  +G 
Sbjct: 2   INGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRGQ 61

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            A+++ Y  L+   ++      A+ALL+ ++    E ++  Y++++DGLC+ GR ++A++
Sbjct: 62  QADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQE 121

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               L  KG       +N++INGLCK+G+  EA  +L +M++ GC PD  ++ T+I+   
Sbjct: 122 VYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRALF 181

Query: 192 VKNETDRASSFLKK 205
             +  D+A   L++
Sbjct: 182 KNDMNDKAVKLLRE 195



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+    +EA     +L  K + P +V Y+ LI+GLCK G I +   L+  M ++G
Sbjct: 1   MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              D   + +++      ++ D+A + LKK
Sbjct: 61  QQADIIIYTSLLDALFKNHQVDKAIALLKK 90


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++D A       +  G   +  VY +LI+G C   ++  A E+F
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G    + TY  LI D   K GR   AM +L  + +D    N+  Y+ +IDGLCR
Sbjct: 503 LQMTKCGYLPSVHTYTSLI-DRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G  E+A K L  + EKG  P VVTY  LI+GL K G I  +  L  QM  KGC P+  +
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D+A   L
Sbjct: 622 YRVLINHLCAAGLLDKARLLL 642



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   +++ A          G+  DV+ Y+ LI+  C   
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A  LF++M + G +  +VTY  LIH   + +    A  +   +       N   Y 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 115 LVIDGLCRVGRWEEA---RKKLDQLSEKG-------------LVPGVVTYNILINGLCKK 158
            ++DGLC+ G   +A     KL   S+               L P VVTY  L++GLCK 
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 457

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +  A +LL  M   GC P+   ++ +I GF    + D A
Sbjct: 458 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498



 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK   I+ A          G    V  Y++LI+      ++ +A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL----------------ERDKY 106
            +MV  G     VTY  L+ D   K G  S A  +   L                +R   
Sbjct: 382 HRMVDAGCRPNDVTYGALV-DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 440

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  ++DGLC+  + + A + LD +   G  P  + Y+ LI+G CK G I  A +
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +QM + G  P   ++ ++I         D A   L +
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 539



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD----NWEK----QGRFS 93
           VY+  I  +C   +L    +L D  +A+ I  E++  N +++     N+ +     G+F 
Sbjct: 214 VYNIFIGSICGQEKLPSP-DLLD--LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 270

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L++ + R  +  +   YS VI  LC   + E+A     ++   G+ P V TY ILI
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  CK G+I +A  L  +M+  GC P   ++  +I  +L   +  +A+    +
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 383



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +  +A +L  +M+ +G   +  TY+ +I           A  L Q ++      +
Sbjct: 263 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 322

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++ID  C+ G  E+A+   +++   G  P VVTY  LI+   K   + +A+ +  
Sbjct: 323 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFH 382

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M + GC P+  ++  ++ G        +A
Sbjct: 383 RMVDAGCRPNDVTYGALVDGLCKAGNISKA 412



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 48/234 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+C+I E + A+K       KG   +V  Y++LI+GL    ++  +++LF
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 64  DKMVAQGITAELVTYNPLIHD--------------------NWEK--QGR---------- 91
            +M  +G +   VTY  LI+                      W K  QG           
Sbjct: 608 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667

Query: 92  -FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---- 146
             +++ +L+ +E         VY ++ID   + GR E A +   ++ E   VP  V    
Sbjct: 668 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDN 724

Query: 147 -TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             Y  LI  LC    + EA +L  +M  +G  P+ + F  +I+G +   + D A
Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++L+  L +  ++     +  +M   G   +  T     H    K+GR++    L  +
Sbjct: 42  TYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAH-ALCKEGRWADA--LDMI 98

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ER+ ++L+  + + +I GL     ++EA   L ++     +P VVTY  L++G  KK  +
Sbjct: 99  EREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
               +++  M  +GC P+ + FN+++  +   NE D A ++
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYC--NEKDYAYAY 197



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           +++E  F  +    G   + +CK       +D   ++   LD  + + +I+GL   +   
Sbjct: 65  EMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFD 124

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA+    +M        +VTY  L+    +K+       ++  +  +    N  +++ ++
Sbjct: 125 EAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLV 184

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              C    +  A K L++++  G  PG V YNI I  +C +  +   D  L+ + EK
Sbjct: 185 HSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD--LLDLAEK 239


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 116/207 (56%), Gaps = 9/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA------IKKGIC--LDVFVYSSLINGLCTFNRLKEA 59
            + N  ++ I +   CK  +IDSA      +KK      ++  YS+LINGLC   RLKEA
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255

Query: 60  VELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           +ELF++MV++  I  + +TYN LI+     +    A+ +++ ++++    N+  YS +++
Sbjct: 256 IELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMN 315

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+ GR EEA++  D++   GL P  V Y  LIN  C+ G + EA +LL  M+E  C  
Sbjct: 316 GFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRA 375

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ +FN ++ G   +   + A   L++
Sbjct: 376 DTVTFNVILGGLCREGRFEEARGMLER 402



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 104/182 (57%), Gaps = 9/182 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING C   ++D A+K        G   +VF YS+L+NG C   RL+EA E+FD+M
Sbjct: 274 TYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEM 333

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G+  + V Y  LI + + + GR   AM LL+ +  +K   +   +++++ GLCR GR
Sbjct: 334 KSLGLKPDTVGYTTLI-NFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGR 392

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +EEAR  L++L  +G+     +Y I++N LC++G + +A +L+  M  +G  P   + N 
Sbjct: 393 FEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNE 452

Query: 186 VI 187
           ++
Sbjct: 453 LL 454


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  +     YG  ++G+ KI  +D A         KGI L+V +YSSLI+G     
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  + ++M+ +G+T  + T+N L+    + +    A+   Q+++  K   N   YS
Sbjct: 417 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLCRV ++ +A      + ++GLVP VVTY  +I+GL K G I +A  L  + K  
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ SFN +I+G    N    A
Sbjct: 537 GGIPDAASFNALIEGMSNANRAMEA 561



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 94/166 (56%), Gaps = 1/166 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            + Y+++I G  +  R ++A +L +++  +G    +V++N ++    +K+    A++L +
Sbjct: 53  AYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 112

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++D  E N   Y+++ID LC  GR EEA + LD++    L P ++T NI+++ LCK  
Sbjct: 113 VMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 171

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA K+     ++GC PD  ++ ++I G   K + D A    +K
Sbjct: 172 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 217



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE  +      ++G  LD   Y+++++G C   
Sbjct: 287 DIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 346

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A E+ ++M  + +   + TY  ++ D   K  R   A  L +  +    ELN+ +Y
Sbjct: 347 KVHKAYEILEEMKEKCVQPTVATYGAIV-DGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 405

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 406 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 465

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             C P++ +++ +I G     + ++A  F
Sbjct: 466 MKCPPNTYTYSILINGLCRVQKYNKAFVF 494



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK R+++       SA ++G   D   Y SLI+GL    ++ EA  LF
Sbjct: 156 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLF 215

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G  A  V Y  LI + +    +     + + L R   + ++ + +  +D + + 
Sbjct: 216 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 275

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   + +   G +P V +Y+ILI+GL K G   E   +   MK++G   D+ ++
Sbjct: 276 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 335

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF    +  +A   L++
Sbjct: 336 NAVVDGFCKSGKVHKAYEILEE 357



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NF ++G + +G    +E+   I++G   D+ + ++ ++ +     +++   +F+ + + G
Sbjct: 236 NFFIHGRKEDGHKIFKEL---IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 292

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ +Y+ LIH   +         +   +++  + L+   Y+ V+DG C+ G+  +A 
Sbjct: 293 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 352

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++ EK + P V TY  +++GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 353 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 412

Query: 191 LVKNETDRASSFLKKNM 207
                 D A   L++ M
Sbjct: 413 GKVGRIDEAYLILEEMM 429



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I  LC+ GR  EA +   Q+  +  VP    YN +I G    G   +A KLL +++
Sbjct: 21  YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 80

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           E+GC P   SFN+++     K + D A S  +
Sbjct: 81  ERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 112



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K   +L  +GL P  V+Y  +I  LCK G + EA++L  QM+ +   P + ++NT+I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 189 GFLVKNETDRASSFLKK 205
           G+      + A   L++
Sbjct: 62  GYGSAGRFEDAYKLLER 78


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 7/197 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I+G+ K  +++ A K        GI      Y+ +I+G+C    L EA+ELF  M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G      T+N LI  + ++     A  LL+ +  D +  ++  YS +I GLC + R +
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +AR  L+ + ++   P VVT N LI+GLCK G I EA ++L  M   G  PD  ++NT++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 188 QGFLVKNETDRASSFLK 204
            G     +T+RA   L 
Sbjct: 368 HGHCRAGQTERARELLS 384



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 47/204 (23%)

Query: 6   QRFKGNFHV-----YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +R   + HV     Y   I+G+C I  +D A       +K+     V   ++LI+GLC  
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+KEA E+ D MV+ G + ++VTYN L+H                              
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVH------------------------------ 368

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                G CR G+ E AR+ L  +  +GL P VVTY  L++GLCK   + EA  +  QMK 
Sbjct: 369 -----GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 423

Query: 174 KGCFPDSTSFNTVIQGFLVKNETD 197
            GC P+  ++  +I GF    + D
Sbjct: 424 SGCAPNLFTYTALILGFCSAGQVD 447



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++ +  D + Y  LI+GL    +L +A +LF K++  G+T   V Y  LIH         
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L   + R     +   Y+++ID  C+ G  EEA   + ++ E G VP VVTYN ++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +GLCK G + EA  L  +M+  GC P+  S NT+I G   +++ D+A
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 169



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    +   YGI I+G+ K  +++ A       +  G+      Y+SLI+GLC  N 
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A ELF  M  +G     VTYN +I  + ++     A  L++ +  D +  ++  Y+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+DGLC+ GR EEA    +++   G  P   ++N +I GLC++  I +A ++  +M+ + 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PDS S+  +I G     + + A    ++
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRR 210



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+  CK   ++ A       I+ G   DV  Y+++++GLC   R++EA+ LF++M
Sbjct: 82  TYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEM 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G T    ++N +I    ++     A  +   +E      +   Y ++IDGL + G+ 
Sbjct: 142 ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKL 201

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++ + G+ P  VTYN++I+G+C    + EA +L   M+ KGC P   +FN +
Sbjct: 202 NEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNIL 261

Query: 187 IQGFLVKNETDRASSFLKK 205
           I     + + D A   LK+
Sbjct: 262 IDAHCKRGKMDEAFRLLKR 280



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   ++ A+       + G   +   ++++I GLC  +++ +A ++F +M
Sbjct: 117 TYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+ I  +  +Y  LI D   K G+ + A  L + +       +   Y++VI G+C    
Sbjct: 177 EARDIPPDSWSYGILI-DGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA +    +  KG  P   T+NILI+  CK+G + EA +LL +M + G  PD  +++T
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G       D A   L+
Sbjct: 296 LISGLCSIARVDDARHLLE 314



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y   ++G+CK   +  A          G   ++F Y++LI G C+  
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--- 111
           ++   ++LF +MV  GI+ + V Y  L  +   K GR SA AL + L   +  L  E   
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTLAAE-LCKSGR-SARAL-EILREGRESLRSEAWG 501

Query: 112 --VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             VY   +DGL   G+ E A   +  +   G +P       L+ GLCK G   EA  +L 
Sbjct: 502 DEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE 561

Query: 170 QM 171
           ++
Sbjct: 562 EI 563


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++D A       +  G   +  VY +LI+G C   ++  A E+F
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G    + TY  LI D   K GR   AM +L  + +D    N+  Y+ +IDGLCR
Sbjct: 503 LQMTKCGYLPSVHTYTSLI-DRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G  E+A K L  + EKG  P VVTY  LI+GL K G I  +  L  QM  KGC P+  +
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D+A   L
Sbjct: 622 YRVLINHLCAAGLLDKARLLL 642



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   +++ A          G+  DV+ Y+ LI+  C   
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A  LF++M + G +  +VTY  LIH   + +    A  +   +       N   Y 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 115 LVIDGLCRVGRWEEA---RKKLDQLSEKG-------------LVPGVVTYNILINGLCKK 158
            ++DGLC+ G   +A     KL   S+               L P VVTY  L++GLCK 
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 457

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +  A +LL  M   GC P+   ++ +I GF    + D A
Sbjct: 458 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK   I+ A          G    V  Y++LI+      ++ +A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL----------------ERDKY 106
            +MV  G     VTY  L+ D   K G  S A  +   L                +R   
Sbjct: 382 HRMVDAGCRPNDVTYGALV-DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 440

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  ++DGLC+  + + A + LD +   G  P  + Y+ LI+G CK G I  A +
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +QM + G  P   ++ ++I         D A   L +
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 539



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD----NWEK----QGRFS 93
           VY+  I  +C   +L    +L D  +A+ I  E++  N +++     N+ +     G+F 
Sbjct: 214 VYNIFIGSICGQEKLPSP-DLLD--LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 270

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L++ + R  +  +   YS VI  LC   + E+A     ++   G+ P V TY ILI
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  CK G+I +A  L  +M+  GC P   ++  +I  +L   +  +A+    +
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 383



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +  +A +L  +M+ +G   +  TY+ +I           A  L Q ++      +
Sbjct: 263 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 322

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++ID  C+ G  E+A+   +++   G  P VVTY  LI+   K   + +A+ +  
Sbjct: 323 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFH 382

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M + GC P+  ++  ++ G        +A
Sbjct: 383 RMVDAGCRPNDVTYGALVDGLCKAGNISKA 412



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 48/234 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+C+I E + A+K       KG   +V  Y++LI+GL    ++  +++LF
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 64  DKMVAQGITAELVTYNPLIHD--------------------NWEK--QGR---------- 91
            +M  +G +   VTY  LI+                      W K  QG           
Sbjct: 608 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667

Query: 92  -FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---- 146
             +++ +L+ +E         VY ++ID   + GR E A +   ++ E   VP  V    
Sbjct: 668 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDN 724

Query: 147 -TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             Y  LI  LC    + EA +L  +M  +G  P+ + F  +I+G +   + D A
Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++L+  L +  ++     +  +M   G   +  T     H    K+GR++    L  +
Sbjct: 42  TYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAH-ALCKEGRWADA--LDMI 98

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ER+ ++L+  + + +I GL     ++EA   L ++     +P VVTY  L++G  KK  +
Sbjct: 99  EREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
               +++  M  +GC P+ + FN+++  +   NE D A ++
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYC--NEKDYAYAY 197



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           +++E  F  +    G   + +CK       +D   ++   LD  + + +I+GL   +   
Sbjct: 65  EMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFD 124

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA+    +M        +VTY  L+    +K+       ++  +  +    N  +++ ++
Sbjct: 125 EAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLV 184

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              C    +  A K L++++  G  PG V YNI I  +C +  +   D  L+ + EK
Sbjct: 185 HSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD--LLDLAEK 239


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++D A       +  G   +  VY +LI+G C   ++  A E+F
Sbjct: 378 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 437

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G    + TY  LI D   K GR   AM +L  + +D    N+  Y+ +IDGLCR
Sbjct: 438 LQMTKCGYLPSVHTYTSLI-DRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 496

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G  E+A K L  + EKG  P VVTY  LI+GL K G I  +  L  QM  KGC P+  +
Sbjct: 497 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 556

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D+A   L
Sbjct: 557 YRVLINHLCAAGLLDKARLLL 577



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   +++ A          G+  DV+ Y+ LI+  C   
Sbjct: 213 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 272

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A  LF++M + G +  +VTY  LIH   + +    A  +   +       N   Y 
Sbjct: 273 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 332

Query: 115 LVIDGLCRVGRWEEA---RKKLDQLSEKG-------------LVPGVVTYNILINGLCKK 158
            ++DGLC+ G   +A     KL   S+               L P VVTY  L++GLCK 
Sbjct: 333 ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKA 392

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +  A +LL  M   GC P+   ++ +I GF    + D A
Sbjct: 393 HKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 433



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK   I+ A          G    V  Y++LI+      ++ +A ++F
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL----------------ERDKY 106
            +MV  G     VTY  L+ D   K G  S A  +   L                +R   
Sbjct: 317 HRMVDAGCRPNDVTYGALV-DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTL 375

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  ++DGLC+  + + A + LD +   G  P  + Y+ LI+G CK G I  A +
Sbjct: 376 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 435

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +QM + G  P   ++ ++I         D A   L +
Sbjct: 436 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 474



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD----NWEK----QGRFS 93
           VY+  I  +C   +L    +L D  +A+ I  E++  N +++     N+ +     G+F 
Sbjct: 149 VYNIFIGSICGQEKLPSP-DLLD--LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 205

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L++ + R  +  +   YS VI  LC   + E+A     ++   G+ P V TY ILI
Sbjct: 206 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  CK G+I +A  L  +M+  GC P   ++  +I  +L   +  +A+    +
Sbjct: 266 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 318



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +  +A +L  +M+ +G   +  TY+ +I           A  L Q ++      +
Sbjct: 198 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 257

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++ID  C+ G  E+A+   +++   G  P VVTY  LI+   K   + +A+ +  
Sbjct: 258 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFH 317

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M + GC P+  ++  ++ G        +A
Sbjct: 318 RMVDAGCRPNDVTYGALVDGLCKAGNISKA 347



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 48/234 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+C+I E + A+K       KG   +V  Y++LI+GL    ++  +++LF
Sbjct: 483 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 542

Query: 64  DKMVAQGITAELVTYNPLIHD--------------------NWEK--QGR---------- 91
            +M  +G +   VTY  LI+                      W K  QG           
Sbjct: 543 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 602

Query: 92  -FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---- 146
             +++ +L+ +E         VY ++ID   + GR E A +   ++ E   VP  V    
Sbjct: 603 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDN 659

Query: 147 -TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             Y  LI  LC    + EA +L  +M  +G  P+ + F  +I+G +   + D A
Sbjct: 660 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 713



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K+GR++    L  +ER+ ++L+  + + +I GL     ++EA   L ++     +P VVT
Sbjct: 22  KEGRWADA--LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 79

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           Y  L++G  KK  +    +++  M  +GC P+ + FN+++  +   NE D A ++
Sbjct: 80  YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC--NEKDYAYAY 132



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK----IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           ++E  F  +    G   + +CK       +D   ++   LD  + + +I+GL   +   E
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE 60

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+    +M        +VTY  L+    +K+       ++  +  +    N  +++ ++ 
Sbjct: 61  AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 120

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             C    +  A K L++++  G  PG V YNI I  +C +  +   D  L+ + EK
Sbjct: 121 SYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD--LLDLAEK 174


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + +  +Y   I+G+CK + ID A         KGI  DVF Y+SLI+ LC + R  +A
Sbjct: 250 KIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDA 309

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT++ LI D + K+G+   A  L   + +   + +I  YS +I+
Sbjct: 310 SRLLSNMIERKINPNVVTFSALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA+   + +  K   P VVTYN LI G CK   + E  +L  +M ++G   
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++NT+IQG     + D A    KK
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKK 455



 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G CK + ++  +       ++G+  +   Y++LI GL        A ++F
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KMV+ G+  +++TY+ L+ D   K G+   A+ + + L++ K E +I  Y+++I+G+C+
Sbjct: 454 KKMVSDGVPPDIITYSILL-DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+       LS KG+ P V+ Y  +I+G C+KG+  EAD L  +MKE G  PDS  
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGC 572

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 573 YNTLIRARL--RDGDKAAS 589



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  Y++LI G C   
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++E +ELF +M  +G+    VTYN LI   ++      A  + + +  D    +I  YS
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGLC+ G+ E+A    + L +  + P + TYNI+I G+CK G + +   L   +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+   + T+I GF  K   + A +  ++
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFRE 560



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C  + I       D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G 
Sbjct: 157 LNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGC 216

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A++LL+ +E+ K E ++ +Y+ +IDGLC+    ++A  
Sbjct: 217 QPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFA 276

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++  KG+ P V TYN LI+ LC  G   +A +LL  M E+   P+  +F+ +I  F+
Sbjct: 277 LFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFV 336



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 7/189 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   + + Y I IN  C+  ++  A+       K G   D+   SSL+NG C   R+ +A
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 169

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           V L D+MV  G   + VT+N LIH  +       A+AL+  + +   + ++  Y  V++G
Sbjct: 170 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNG 229

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G  + A   L ++ +  +   VV YN +I+GLCK   I +A  L  +M+ KG  PD
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 180 STSFNTVIQ 188
             ++N++I 
Sbjct: 290 VFTYNSLIS 298



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I G+ +  + D A       +  G+  D+  YS L++GLC + 
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +  ++ TYN +I    +         L  +L     + N+ +Y+
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 539

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P    YN LI    + G    + +L+ +M+  
Sbjct: 540 TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC 599

Query: 175 GCFPDSTSFNTVI 187
           G   D+++ + VI
Sbjct: 600 GFVGDASTISMVI 612


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  +     YG  ++G+ KI  +D A         KGI L+V +YSSLI+G     
Sbjct: 489 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 548

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  + ++M+ +G+T  + T+N L+    + +    A+   Q+++  K   N   YS
Sbjct: 549 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 608

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLCRV ++ +A      + ++GLVP VVTY  +I+GL K G I +A  L  + K  
Sbjct: 609 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ SFN +I+G    N    A
Sbjct: 669 GGIPDAASFNALIEGMSNANRAMEA 693



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 94/166 (56%), Gaps = 1/166 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            + Y+++I G  +  R ++A +L +++  +G    +V++N ++    +K+    A++L +
Sbjct: 185 AYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 244

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++D  E N   Y+++ID LC  GR EEA + LD++    L P ++T NI+++ LCK  
Sbjct: 245 VMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 303

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA K+     ++GC PD  ++ ++I G   K + D A    +K
Sbjct: 304 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 349



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE  +      ++G  LD   Y+++++G C   
Sbjct: 419 DIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 478

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A E+ ++M  + +   + TY  ++ D   K  R   A  L +  +    ELN+ +Y
Sbjct: 479 KVHKAYEILEEMKEKCVQPTVATYGAIV-DGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 537

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 538 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 597

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             C P++ +++ +I G     + ++A  F
Sbjct: 598 MKCPPNTYTYSILINGLCRVQKYNKAFVF 626



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK R+++       SA ++G   D   Y SLI+GL    ++ EA  LF
Sbjct: 288 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLF 347

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G  A  V Y  LI + +    +     + + L R   + ++ + +  +D + + 
Sbjct: 348 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKA 407

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   + +   G +P V +Y+ILI+GL K G   E   +   MK++G   D+ ++
Sbjct: 408 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 467

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF    +  +A   L++
Sbjct: 468 NAVVDGFCKSGKVHKAYEILEE 489



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y + I  + + R  + A++        G  + V ++++L+  L    ++ +A
Sbjct: 40  KFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADA 99

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D++    +  ++V YN  I D + K G    A      L+    + +   Y+ +I 
Sbjct: 100 LALVDEVKGSCLEPDIVLYNVCI-DCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIW 158

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  EA +   Q+  +  VP    YN +I G    G   +A KLL +++E+GC P
Sbjct: 159 VLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIP 218

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
              SFN+++     K + D A S  +
Sbjct: 219 SVVSFNSILTCLGKKRKVDEALSLFE 244



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NF ++G + +G    +E+   I++G   D+ + ++ ++ +     +++   +F+ + + G
Sbjct: 368 NFFIHGRKEDGHKVFKEL---IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 424

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ +Y+ LIH   +         +   +++  + L+   Y+ V+DG C+ G+  +A 
Sbjct: 425 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 484

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++ EK + P V TY  +++GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 485 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 544

Query: 191 LVKNETDRASSFLKKNM 207
                 D A   L++ M
Sbjct: 545 GKVGRIDEAYLILEEMM 561


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  +     YG  ++G+ KI  +D A         KGI L+V +YSSLI+G     
Sbjct: 623 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 682

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  + ++M+ +G+T  + T+N L+    + +    A+   Q+++  K   N   YS
Sbjct: 683 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 742

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLCRV ++ +A      + ++GLVP VVTY  +I+GL K G I +A  L  + K  
Sbjct: 743 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ SFN +I+G    N    A
Sbjct: 803 GGIPDAASFNALIEGMSNANRAMEA 827



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 94/166 (56%), Gaps = 1/166 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            + Y+++I G  +  R ++A +L +++  +G    +V++N ++    +K+    A++L +
Sbjct: 319 AYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 378

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++D  E N   Y+++ID LC  GR EEA + LD++    L P ++T NI+++ LCK  
Sbjct: 379 VMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 437

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA K+     ++GC PD  ++ ++I G   K + D A    +K
Sbjct: 438 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 483



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---RE---IDSAIKK-GICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE   I  A+K+ G  LD   Y+++++G C   
Sbjct: 553 DIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 612

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           ++ +A E+ ++M  + +   + TY  ++ D   K  R   A  L +  +    ELN+ +Y
Sbjct: 613 KVHKAYEILEEMKEKCVQPTVATYGAIV-DGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 671

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 672 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 731

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             C P++ +++ +I G     + ++A  F
Sbjct: 732 MKCPPNTYTYSILINGLCRVQKYNKAFVF 760



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK R+++       SA ++G   D   Y SLI+GL    ++ EA  LF
Sbjct: 422 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLF 481

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G  A  V Y  LI + +    +     + + L R   + ++ + +  +D + + 
Sbjct: 482 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 541

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   + +   G +P V +Y+ILI+GL K G   E   +   MK++G   D+ ++
Sbjct: 542 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 601

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF    +  +A   L++
Sbjct: 602 NAVVDGFCKSGKVHKAYEILEE 623



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y + I  + + R  + A++        G  + V ++++L+  L    ++ +A
Sbjct: 174 KFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADA 233

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D++    +  ++V YN  I D + K G    A      L+    + +   Y+ +I 
Sbjct: 234 LALVDEVKGSCLEPDIVLYNVCI-DCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIW 292

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  EA +   Q+  +  VP    YN +I G    G   +A KLL +++E+GC P
Sbjct: 293 VLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIP 352

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
              SFN+++     K + D A S  +
Sbjct: 353 SVVSFNSILTCLGKKRKVDEALSLFE 378



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NF ++G + +G    +E+   I++G   D+ + ++ ++ +     +++   +F+ + + G
Sbjct: 502 NFFIHGRKEDGHKIFKEL---IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 558

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ +Y+ LIH   +         +   +++  + L+   Y+ V+DG C+ G+  +A 
Sbjct: 559 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 618

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++ EK + P V TY  +++GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 619 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 678

Query: 191 LVKNETDRASSFLKKNM 207
                 D A   L++ M
Sbjct: 679 GKVGRIDEAYLILEEMM 695


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 26/210 (12%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++ +    N   Y I IN  CKI+ +D A+K       K I  +V  YSSLI+GLC   R
Sbjct: 372 MSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGR 431

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+EL D+M  +G   +++T                   L + L+      N+  Y++
Sbjct: 432 ISYALELNDEMHDRGQQPDIIT-------------------LTRQLKDQGIRPNMFTYTI 472

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+ GR E+AR   + L  KG    V TY ++I+G C KG+  EA  LL +MK+  
Sbjct: 473 LIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNC 532

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P++ ++  +I+     +E D+A +F  K
Sbjct: 533 CIPNAVTYEIIIRSLFDNDENDKAENFFVK 562



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 19/196 (9%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N  +Y   I+ MCK +  + A       + K I  DV  Y++LING C   +LK+A+
Sbjct: 237 LQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAI 296

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------AMALLQTLERDKYELNIEVYS 114
            LF+KM ++ I  ++ T+N L+ D + K+GR        AM + Q ++ D     +  Y+
Sbjct: 297 GLFNKMTSENINPDVYTFNILV-DAFCKEGRVKEAKNGLAMMMKQGIKPD-----VVTYN 350

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D  C V    +A+   + +S +G+   V +Y+I+IN  CK  M+ +A KL  +M  K
Sbjct: 351 SLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHK 410

Query: 175 GCFPDSTSFNTVIQGF 190
             FP+  +++++I G 
Sbjct: 411 QIFPNVITYSSLIDGL 426



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +R   + + Y   ING C + ++  AI        + I  DV+ ++ L++  C   
Sbjct: 266 EMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG 325

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+KEA      M+ QGI  ++VTYN L+           A ++  T+       N+  YS
Sbjct: 326 RVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYS 385

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+  C++   ++A K   ++  K + P V+TY+ LI+GLCK G I  A +L  +M ++
Sbjct: 386 IMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDR 445

Query: 175 GCFPD 179
           G  PD
Sbjct: 446 GQQPD 450



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 78/147 (53%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +  ++L  ++  + +   LV YN +I    + +    A  L   +   +   ++  Y+ +
Sbjct: 223 RAPLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNAL 282

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+G C VG+ ++A    ++++ + + P V T+NIL++  CK+G + EA   L  M ++G 
Sbjct: 283 INGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGI 342

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  ++N+++  + + NE ++A S  
Sbjct: 343 KPDVVTYNSLMDRYCLVNEVNKAKSIF 369



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 88  KQGRFSAMALLQTLERDKYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           +QG  S  A LQ L R   +L   N+ +Y+ +ID +C+     +A     ++  K + P 
Sbjct: 216 EQGSLSQRAPLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPD 275

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           V TYN LING C  G + +A  L  +M  +   PD  +FN ++  F
Sbjct: 276 VNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAF 321


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 8/203 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE-L 62
           + + Y   +N  CK  ++  A++       KG   DV  YS++I+GLC   ++ EA+E L
Sbjct: 77  SIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEML 136

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F KM+ +G +A  V YN LI+   + +    A  LL+ +    Y  +   Y+ ++ GLCR
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G+  EA++  D +  +G  P VV YN L++ L K+G   EA KL   +  KG  PD+ +
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVT 256

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N+++ G   K+  D A    KK
Sbjct: 257 YNSILLGLARKSNMDEAEEMFKK 279



 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y   ING+CK   I+ A K       KG   D   Y+++++GLC   +
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK 199

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKY-------- 106
           + EA + FD M ++G + ++V YN L+ D   K+G+   AM L + +    Y        
Sbjct: 200 VSEAKQFFDSMPSRGYSPDVVAYNGLL-DALYKEGKTDEAMKLFKDVIAKGYMPDTVTYN 258

Query: 107 ---------------------------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                                        N   YS+V+ G CR  + ++A K L+++S+ 
Sbjct: 259 SILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKI 318

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G VP VVTYNIL++GLCK  ++ +A +L   M + GC PD  S++ V+ G    N+   A
Sbjct: 319 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 378



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 7/176 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++G C+ +++D A        K G   DV  Y+ L++GLC  N + +A ELF
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 347

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G   ++V+Y+ +++   +      A  L   +   K   ++  +++++DGLC+ 
Sbjct: 348 STMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKA 407

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           G+ +EA+  LDQ++  G  P  V YN L+NGL K+G  ++AD+L   MKEKG   D
Sbjct: 408 GKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI  D   Y+ LI+G     R+ EA  L+++MV+ G+   + TYN L++   ++   
Sbjct: 35  LDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKM 94

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNI 150
             AM L +T+    +E ++  YS +I GLC+ G+  EA + L  ++ E+G     V YN 
Sbjct: 95  KEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNA 154

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LINGLCK   I  A KLL +M  KG  PD+ ++NT++ G     +   A  F 
Sbjct: 155 LINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFF 207



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
           + E+ F+ +   Y   I+G+CK  ++  A        I++G   +   Y++LINGLC   
Sbjct: 104 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDE 163

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            ++ A +L ++M ++G   + +TYN ++     + G+ S A     ++    Y  ++  Y
Sbjct: 164 NIERAYKLLEEMASKGYVPDNITYNTILS-GLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 222

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++D L + G+ +EA K    +  KG +P  VTYN ++ GL +K  + EA+++  +M  
Sbjct: 223 NGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVA 282

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P+  +++ V+ G     + D A   L++
Sbjct: 283 SGCAPNGATYSIVLSGHCRAKKVDDAHKVLEE 314



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           + +  ++   C   +L++  +LF++M+  GI+ + + YN LI D + K+GR   A  L +
Sbjct: 9   YTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILI-DGYAKKGRVDEANRLYE 67

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +     E +I  Y+ +++  C+  + +EA +    ++EKG  P VVTY+ +I+GLCK G
Sbjct: 68  EMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127

Query: 160 MIMEADKLLV-QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA ++L  +M E+GC  ++ ++N +I G       +RA   L++
Sbjct: 128 KVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 174



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N   + +V+   C+ G+  +  K  +Q+ + G+ P  + YNILI+G  KKG + EA++L 
Sbjct: 7   NRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLY 66

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +M   G  P   ++N+++  F  + +   A    K
Sbjct: 67  EEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFK 102



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           P   T+ +++   CK+G + +  KL  QM + G  PD   +N +I G+  K   D A+
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N   Y I I G+C+ +++D A       I  G   +V  Y SL++GLC   +
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           LKEAV+LF +MV +G   + V YN LI D + K+G    A  L + +        +  Y+
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLI-DGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G  R G +   +     +  +G VP + T+N L++G CK G ++EA +L ++M+  
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  S+NT+++G   K +   A   L++
Sbjct: 257 GCPPDVVSYNTLMRGMCSKGKPHEAQRLLRE 287



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           HVYG            +  +  G   + + Y  L+  LC   R +EA  +F  M AQG +
Sbjct: 35  HVYGT----------YNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCS 84

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             + +Y+ LI      Q    A  LL  +    ++ N+  Y  ++ GLC++G+ +EA   
Sbjct: 85  PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
             ++  +G  P  V YN+LI+G  KKG + EA +L  +M EKGC P   ++N+++ GF  
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 193 KNETDRASSFLK 204
           K E  R  S  K
Sbjct: 205 KGEFGRVQSLFK 216



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 77/157 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  L    R       ++ M+  G      TY  L+    + Q    A ++ + + 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 N+  YS++I GLCR  + +EA + L+++ + G  P VVTY  L++GLCK G + 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EA  L  +M  +GC PD   +N +I GF  K +   A
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++G   ++F +++L++G C    + EA  LF +M + G   ++V+YN L+     K   
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKP 278

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  LL+ + R     +I  Y+++IDG  + G  + A K   ++ + GL P   +Y+ +
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTI 338

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+ LC+ G +  A  +   M   G  PD+     ++ G 
Sbjct: 339 IDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL 377



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           D+  Q    N   +   ++G CK+ ++  A +        G   DV  Y++L+ G+C+  
Sbjct: 217 DMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKG 276

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +  EA  L  +M+  G+  ++V+YN LI D + K G    A+ L   + +   E +   Y
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILI-DGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +ID LCR G+   A      +   G  P       L+ GLC+   + E+ +L   M +
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 174 KGCFPDSTSFNTVI 187
             C P    +N ++
Sbjct: 396 FECVPLIPEYNLLM 409



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G  K   +D AIK        G+  D F YS++I+ LC   ++  A  +F  M+
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A G   +     PL+      +    +  L Q + + +    I  Y+L++  LC+  R +
Sbjct: 360 ANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSD 419

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGL 155
           +  +   +L+E+G  P V    +++  L
Sbjct: 420 DVCEIFHELTERGFSPDVEISKVILETL 447



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +++ L + GR +      + +   G VP   TY  L+  LC+     EA  +   M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +GC P+  S++ +I G     + D A+  L +
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNE 112



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +++ +   + +   Y   I+ +C+  ++ +A       I  G   D  V   L+ GLC  
Sbjct: 321 YEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG 380

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL E+ ELF  MV       +  YN L++   + +       +   L    +  ++E+ 
Sbjct: 381 ERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEIS 440

Query: 114 SLVIDGLCRVGRWEEA 129
            ++++ L R    E A
Sbjct: 441 KVILETLRRSDDKEAA 456


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 117/210 (55%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + +   + + + Y   I G+C      +A+       ++G   DV  Y+ L+   C  + 
Sbjct: 157 VADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSG 216

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            K+A++L D+M  +G   ++VTYN ++ +   ++GR   AM  L+ L     E N   Y+
Sbjct: 217 YKQAMKLLDEMHDKGCAPDIVTYN-VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYN 275

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +V+ GL    RWE+A K +++++ KG  P VVT+N+LI+ LC++G++  A ++L QM + 
Sbjct: 276 IVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQY 335

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GC P+S S+N ++  F  + +  +A  F++
Sbjct: 336 GCTPNSLSYNPLLHAFCKQKKIHKAMEFVE 365



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV VY++++ G C   +L  A  L   M    +  +  TYN LI     +    +A+A+L
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNALAVL 189

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + + R     ++  Y+++++  C+   +++A K LD++ +KG  P +VTYN+++NG+C++
Sbjct: 190 EDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQE 249

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G + +A + L  +   GC P++ S+N V++G       + A   +++
Sbjct: 250 GRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEE 296



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 91/166 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +V  ++ LI+ LC    ++ A+E+ ++M   G T   ++YNPL+H   +++    
Sbjct: 300 KGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHK 359

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM  ++ +       +I  Y+ ++  LCR G  + A + L QL +KG  P +++YN +I+
Sbjct: 360 AMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVID 419

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL K G   EA +LL +M  KG  PD  +++T+  G   ++  + A
Sbjct: 420 GLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEA 465



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++  CK ++I  A       + +G   D+  Y++L+  LC    +  A+EL  ++ 
Sbjct: 344 YNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLK 403

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G +  L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR  R 
Sbjct: 404 DKGCSPVLISYNTVI-DGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRI 462

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA +   ++ + G+ P    YN ++ GLCK+     A  L   M   GC P+ +++  +
Sbjct: 463 EEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTIL 522

Query: 187 IQGF 190
           ++G 
Sbjct: 523 VEGL 526



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           + E   KG   N   + + I+ +C+   ++ A+       + G   +   Y+ L++  C 
Sbjct: 294 MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCK 353

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++ +A+E  + MV++G   ++V+YN L+           A+ LL  L+       +  
Sbjct: 354 QKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLIS 413

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ VIDGL + G+ +EA + LD+++ KGL P ++TY+ + +GLC++  I EA +   +++
Sbjct: 414 YNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQ 473

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + G  P +  +N ++ G   + ET  A
Sbjct: 474 DMGIRPTAALYNAILLGLCKRRETHNA 500



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 42/232 (18%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I +   CK       ++ +D    KG   D+  Y+ ++NG+C   R+++A+E    +
Sbjct: 203 TYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNL 262

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + G     V+YN ++   +  +    A  L++ +       N+  ++++I  LCR G  
Sbjct: 263 PSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLV 322

Query: 127 EEARKKLDQLSE-----------------------------------KGLVPGVVTYNIL 151
           E A + L+Q+ +                                   +G  P +V+YN L
Sbjct: 323 EPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTL 382

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +  LC+ G +  A +LL Q+K+KGC P   S+NTVI G     +T  A   L
Sbjct: 383 LTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELL 434



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 7/168 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C+  E+D AI+       KG    +  Y+++I+GL    + KEA+EL D+M 
Sbjct: 379 YNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMT 438

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +++TY+ +      +     A+     ++         +Y+ ++ GLC+     
Sbjct: 439 SKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETH 498

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            A      +   G +P   TY IL+ GL  +G++ EA +L  Q+  +G
Sbjct: 499 NAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRG 546



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D    KG+  D+  YS++ +GLC  +R++EAV  F K+   GI      YN ++    +
Sbjct: 434 LDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCK 493

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           ++   +A+ L   +       N   Y+++++GL   G  +EAR+   QL  +G+V
Sbjct: 494 RRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I  LC  GR  +AR+    L+  G  P V+ YN ++ G C  G +  A +L+  M  
Sbjct: 108 AALIKKLCASGRTADARR---VLAASG--PDVMVYNAMVAGYCGAGQLDAARRLVADMPV 162

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +   PD+ ++NT+I+G   +  T  A + L+
Sbjct: 163 E---PDAYTYNTLIRGLCGRGRTSNALAVLE 190


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 103/192 (53%), Gaps = 7/192 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY I I G+CK  ++D A +       KG   D F Y +LI+G      + EA  L D+M
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+   +VTYN LI+   + +    A  L   L +     N+  Y+ +IDG C++G  
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A K  D++ E+G+ P VVTY+ LINGLCK G I  + KLL QM + G       + T+
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895

Query: 187 IQGFLVKNETDR 198
           +QG++   E  +
Sbjct: 896 VQGYIRSGEMQK 907



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 44/220 (20%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG+ I+G C+  +ID A++        G+  ++F+ +SLING C    + EA  +  +M
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 393

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V   +  +  +YN L+ D + ++G  S A  L   + ++  E  +  Y+ ++ GLCRVG 
Sbjct: 394 VDWNLKPDSYSYNTLL-DGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 126 WEEARKKLDQLSEKGLVP-----------------------------------GVVTYNI 150
           +++A +    + ++G+ P                                     +T+N 
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +I+GLCK G ++EA+++  +MK+ GC PD  ++ T+I G+
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G+ K+   + A       + +G       ++++I+GLC   ++ EA E+FDKM 
Sbjct: 475 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK 534

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + + +TY  LI    +      A  +   +ER+    +IE+Y+ +I GL +  R  
Sbjct: 535 DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLV 594

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E    L ++  +GL P +VTY  LI+G CK+GM+ +A     +M E G   +    +T++
Sbjct: 595 EVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 188 QGFLVKNETDRASSFLKK 205
            G       D A+  ++K
Sbjct: 655 SGLYRLGRIDEANLLMQK 672



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 60/248 (24%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           LTE   +G   N   YG  I+G CK   +D A        + G+  ++ + S++++GL  
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG-RFSAM-----ALLQTLERDKY 106
             R+ EA  L  KMV  G   +        H+ + K   R++A+     +L ++ +    
Sbjct: 660 LGRIDEANLLMQKMVDHGFFPD--------HECFLKSDIRYAAIQKIADSLDESCKTFLL 711

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLS----------------------------- 137
             NI VY++ I GLC+ G+ ++AR+    LS                             
Sbjct: 712 PNNI-VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 770

Query: 138 ------EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
                  +GLVP +VTYN LINGLCK   +  A +L  ++ +KG FP+  ++NT+I G+ 
Sbjct: 771 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 830

Query: 192 VKNETDRA 199
                D A
Sbjct: 831 KIGNMDAA 838



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 36/210 (17%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I+ GI  DVF+ S ++N  C   ++ EA     KM   G+   +VTY+ LI+        
Sbjct: 218 IRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDV 277

Query: 92  FSAMALLQTLERDKYELNIEVYSL------------------------------------ 115
            +A  +L+ +       N+  Y+L                                    
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG CR G+ ++A + LD++   GL   +   N LING CK+G I EA+ ++ +M +  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PDS S+NT++ G+  +  T  A +   K
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +   K + + Y   ++G C+           D  +++GI   V  Y++L+ GLC    
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A++++  M+ +G+  + V Y+ L+   ++ +    A  L + +    +  +   ++ 
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC++G+  EA +  D++ + G  P  +TY  LI+G CK   + +A K+   M+ + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 176 CFPDSTSFNTVIQGFL 191
             P    +N++I G  
Sbjct: 573 ISPSIEMYNSLISGLF 588



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI------REIDSAIKK-GICLDVFVYSSLINGLCTFN 54
           D+  + F  +   +   I+G+CK+       EI   +K  G   D   Y +LI+G C  +
Sbjct: 497 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKAS 556

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A ++   M  + I+  +  YN LI   ++ +       LL  +       NI  Y 
Sbjct: 557 NVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYG 616

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G  ++A     +++E GL   ++  + +++GL + G I EA+ L+ +M + 
Sbjct: 617 ALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDH 676

Query: 175 GCFPDSTSF 183
           G FPD   F
Sbjct: 677 GFFPDHECF 685



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLE 102
           +SL+N L        A  ++ +M+  GI  ++   + ++ + + K G+   A   ++ +E
Sbjct: 195 NSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMV-NAFCKDGKVDEAAGFVKKME 253

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               E NI  Y  +I+G   +G  E A+  L  +SEKG+   VVTY +LI G CK+  + 
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMD 313

Query: 163 EADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFL 203
           EA+K+L  M+E+    PD  ++  +I G+    + D A   L
Sbjct: 314 EAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLL 355



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 75/148 (50%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           K A+ +FD M   G    L + N L+++  +     +A  + Q + R     ++ + S++
Sbjct: 173 KNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 232

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  C+ G+ +EA   + ++   G+ P +VTY+ LING    G +  A  +L  M EKG 
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
             +  ++  +I+G+  + + D A   L+
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAEKVLR 320



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CKI  +D+A       I++GI   V  YS+LINGLC    ++ +++L 
Sbjct: 818 NVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLL 877

Query: 64  DKMVAQGITAELVTYNPLIH 83
           ++M+  G+ ++L+ Y  L+ 
Sbjct: 878 NQMIKAGVDSKLIEYCTLVQ 897



 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           ++  +  V+ +++      G  + A    D + + G +P + + N L+N L K G    A
Sbjct: 151 EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTA 210

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  QM   G  PD    + ++  F    + D A+ F+KK
Sbjct: 211 HYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 8/195 (4%)

Query: 17  IRINGMCKIRE-IDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           I I  +CK  E ++SA +       +G   D + Y +LINGLC   ++ +A EL D+M  
Sbjct: 160 ILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEE 219

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G++  +V+Y  LIH   +      A+ LL+ +  +  E N+  YS ++DGLC+ G   +
Sbjct: 220 KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQ 279

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + L+ +  + L+P +VTY+ LINGLCK+G   EA ++L +M+ +G  PD+  +  +I 
Sbjct: 280 AMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIIS 339

Query: 189 GFLVKNETDRASSFL 203
           G         A++F+
Sbjct: 340 GLCAACNYQEAANFI 354



 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 18/205 (8%)

Query: 13  HVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  ING+CK+ +I       D   +KG+   V  Y+SLI+GLC  N L EA+EL ++
Sbjct: 192 YTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEE 251

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+  GI   + TY+ L+ D   K G  S AM LL+ + R +   N+  YS +I+GLC+ G
Sbjct: 252 MIINGIEPNVFTYSSLM-DGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEG 310

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF- 183
           +  EA + LD++  +GL P    Y  +I+GLC      EA   + +M   G  P+  S+ 
Sbjct: 311 KHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWT 370

Query: 184 ------NTVIQGFLVKNETDRASSF 202
                 N V+QG    N  D   +F
Sbjct: 371 FHVKMHNMVVQGLC--NNVDPTRAF 393



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTL 101
           Y ++ + L   N +K A+  + +M  +GI   +V+ N LI    + +    SA  L + +
Sbjct: 123 YLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREM 182

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                + +   Y  +I+GLC++G+  +A++ LD++ EKGL P VV+Y  LI+GLC+   +
Sbjct: 183 PNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNL 242

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            EA +LL +M   G  P+  ++++++ G      + +A   L+
Sbjct: 243 DEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLE 285



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 50/214 (23%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK       +  ++  +++ +  ++  YS+LINGLC   + +EAVE+ 
Sbjct: 260 NVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEIL 319

Query: 64  DKMVAQGITAELVTYNPLIHD-----NWEKQGRF-SAMALLQ-TLERDKYELNIEVYSLV 116
           D+M  QG+  +   Y  +I       N+++   F   MAL   +  R  +  +++++++V
Sbjct: 320 DRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMV 379

Query: 117 IDGLC-----------------------------------RVGRWEEARKKLDQLSEKGL 141
           + GLC                                   + G   +A + L+++   G 
Sbjct: 380 VQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGC 439

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLV-QMKEK 174
           +P    +N+L+ GL  +  + E  +LLV ++K+K
Sbjct: 440 IPDEGMWNVLMCGLWDRKKVRETTELLVAELKQK 473


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           +Q F  N + Y      + + R ID            GI  +VF Y+ +I GLC    L 
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A EL ++M   G   +   YN +IH   + +    A+   +++E +K   N+  ++++I
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK---NVITWTIMI 133

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+  R  EA     ++ +KG VP   TYN+LING CK   +  A  LL +MKE G  
Sbjct: 134 DGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA 193

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  +++TVI GF  + + D A    ++
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQ 221



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   + G+CK  +ID A+K       G C  DV  YS+LI GLC   
Sbjct: 256 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAG 315

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL EA +LF+KM       ++VT+  L+ D   K  R   A  +L+T+E      N+  Y
Sbjct: 316 RLDEACKLFEKMRENSCEPDVVTFTALM-DGLCKGDRLQEAQQVLETMEDRNCTPNVITY 374

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGLC+ G+  +A++   ++  +G+ P VVTYN LI+G C    +  A  L+ +M  
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 434

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC PD  ++NT+I G 
Sbjct: 435 TGCLPDIITYNTLIDGL 451



 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIKKGICLD----VFVYSSLINGLCTFNR 55
           L E R  G   +  +Y   I+ +CK R    A+     ++    V  ++ +I+GLC  NR
Sbjct: 82  LEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANR 141

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA   F KM  +G      TYN LI+   +      A  LL+ ++      N+  YS 
Sbjct: 142 LPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYST 201

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI G CR  + + A K   Q+ E G +P +VTYN L++GLC+ G++ EA +LL +M+E+G
Sbjct: 202 VIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERG 261

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             PD  S++T++ G     + D A    + N
Sbjct: 262 LQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292



 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+CK   +  A +       +    +V  YSSLI+GLC   ++++A E+F +M+ +GI
Sbjct: 343 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 402

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN LIH      G  SA+ L++ +       +I  Y+ +IDGLC+ GR  EA +
Sbjct: 403 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 462

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               +  K   P V+TY+ LI G CK   I  A  L   M ++   PD  +F+T+++G+ 
Sbjct: 463 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 522

Query: 192 VKNETDRASSFLKK 205
                D A   L++
Sbjct: 523 NAGLVDDAERLLEE 536



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK      A      +K   C  DV  YS LI G C   R+  A  LFD M
Sbjct: 443 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + Q +  ++VT++ L+           A  LL+ +       ++  Y+ ++DG C+VGR 
Sbjct: 503 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 562

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EAR+ L +++++G  P VVTY  LI+  C+ G    A +LL +M   G  P+  ++ ++
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF    + + A   L++
Sbjct: 623 IGGFCGTGDLEEARKILER 641



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I+G+CK   +  A        KKG   + + Y+ LING C  +++  A  L 
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+   +VTY+ +IH    +    +A  L + +  +    N+  Y+ ++ GLCR 
Sbjct: 185 KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 244

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA + LD++ E+GL P   +Y+ L+ GLCK G I  A K+        C PD  ++
Sbjct: 245 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G       D A    +K
Sbjct: 305 STLIAGLCKAGRLDEACKLFEK 326



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+C+   +D A +       +G+  D F Y +L+ GLC   ++  A+++F
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +         ++V Y+ LI     K GR   A  L + +  +  E ++  ++ ++DGLC+
Sbjct: 290 EDNSNGDCPPDVVAYSTLIA-GLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R +EA++ L+ + ++   P V+TY+ LI+GLCK G + +A ++  +M  +G  P+  +
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408

Query: 183 FNTVIQGFLVKNETDRA 199
           +N++I GF + N  D A
Sbjct: 409 YNSLIHGFCMTNGVDSA 425



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   I+G C+  ++D+A       ++ G   ++  Y++L++GLC   
Sbjct: 186 EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 245

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA EL D+M  +G+  +  +Y+ L+     K G+   A+ + +         ++  Y
Sbjct: 246 LMDEAYELLDEMRERGLQPDKFSYDTLMA-GLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I GLC+ GR +EA K  +++ E    P VVT+  L++GLCK   + EA ++L  M++
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + C P+  +++++I G     +   A    K+
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 396



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 13/200 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK+  ID A       +K+ +  DV  +S+L+ G C    + +A  L ++M
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA   + ++ TY  L+ D + K GR   A  +L+ + +   + N+  Y+ +ID  CR G+
Sbjct: 538 VASDCSPDVYTYTSLV-DGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFN 184
              A + L+++   G+ P V+TY  LI G C  G + EA K+L ++ +++ C  D  ++ 
Sbjct: 597 PTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYR 656

Query: 185 TVIQGFLVKNETDRASSFLK 204
            ++ G      T R S+ L+
Sbjct: 657 VMMDGLC---RTGRMSAALE 673



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +Q    +   +   + G C    +D A       +      DV+ Y+SL++G C   
Sbjct: 501 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVG 560

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ EA  +  +M  +G    +VTY  LI D + + G+ + A  LL+ +  +  + N+  Y
Sbjct: 561 RMVEARRVLKRMAKRGCQPNVVTYTALI-DAFCRAGKPTVAYRLLEEMVGNGVQPNVITY 619

Query: 114 SLVIDGLCRVGRWEEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
             +I G C  G  EEARK L++L  ++     +  Y ++++GLC+ G +  A +LL  +K
Sbjct: 620 RSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 679

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  P    +  +I+G     E  +A   L++
Sbjct: 680 QSGTPPRHDIYVALIRGLCQGKELGKAMEVLEE 712



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   ++G CK+       R +    K+G   +V  Y++LI+  C   +   A  L 
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCR 122
           ++MV  G+   ++TY  LI           A  +L+ LERD+  + ++  Y +++DGLCR
Sbjct: 605 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCR 664

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-EKGCFPDST 181
            GR   A + L+ + + G  P    Y  LI GLC+   + +A ++L +M   +   P++ 
Sbjct: 665 TGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 724

Query: 182 SFNTVIQGFLVKNETDRASSF 202
           ++  VIQ    +   + A++ 
Sbjct: 725 AYEAVIQELAREGRHEEANAL 745



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           + N   Y   I G C   +++ A K        +    D+F Y  +++GLC   R+  A+
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ--TLERDKYELNIEVYSLVID 118
           EL + +   G       Y  LI    + +    AM +L+  TL R K   N E Y  VI 
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSR-KSRPNAEAYEAVIQ 731

Query: 119 GLCRVGRWEEARKKLDQL 136
            L R GR EEA    D+L
Sbjct: 732 ELAREGRHEEANALADEL 749


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 120/206 (58%), Gaps = 23/206 (11%)

Query: 17  IRINGMC---KIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +N +C   ++RE  +A    +++G   ++  Y++LI GLC  +R+ EA  LF +M   
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYEL----NIEVYSLVIDGLCRV 123
           G T ++VTY  LI           A+ L Q +  D  +YE+    N+  Y++++DGLC+V
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 124 GRWEEARKKLDQLSEKGLVPG----------VVTYNILINGLCKKGMIMEADKLLVQMKE 173
           GR +EA++  +++  +G++P           +VT+N+LI+ LCK+G ++EA KLL  M E
Sbjct: 229 GREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIE 288

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PD  ++N++I+GF +  + + A
Sbjct: 289 SGIVPDLVTYNSLIEGFCMVGDLNSA 314



 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING  K  +++ A+K        G   +V  Y SL+ G+    ++ +A +LF  M 
Sbjct: 333 YNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMK 392

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A GI     TY   +    +    F AM L   L+   ++L IE  + +IDGLC+ G+ E
Sbjct: 393 AHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLE 452

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  ++LS +G  P VVTY I+I+G C++G + +A+ L+ +M+  GC PD  ++NT++
Sbjct: 453 TAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLM 512

Query: 188 QGFLVKNETDRASSFLKK 205
           +GF   N+ +     L +
Sbjct: 513 RGFYESNKLEEVVQLLHR 530



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 25/210 (11%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICL-------------DVFVYSSLINGLCTFNRLKEAV 60
            YG  I G+C    I+ A+K    +             +V  Y+ +++GLC   R  EA 
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235

Query: 61  ELFDKM----------VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELN 109
           +LF++M          + QG+  ++VT+N LI D   K+G+   A  LL  +       +
Sbjct: 236 QLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLI-DTLCKEGKVIEAKKLLGVMIESGIVPD 294

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I+G C VG    AR+    +  KG  P V++YN+LING  K   + EA KL  
Sbjct: 295 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 354

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M   G  P+  +++++++G  +  + D A
Sbjct: 355 EMLLVGKRPNVITYDSLLKGIFLAGKVDDA 384



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI  + + Y   ++GLC  + L EA++LF ++ +     E+   N LI D   K G+  +
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI-DGLCKAGKLET 453

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L + L  + +E N+  Y+++I G CR G+ ++A   + ++   G  P ++TYN L+ 
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 513

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           G  +   + E  +LL +M +K   PD+ + + V+   L K+E
Sbjct: 514 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD-MLSKDE 554



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 18/204 (8%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-----------------IKKGICLDVFVYSSLINGLC 51
           K N   Y I ++G+CK+   D A                 + +G+  D+  ++ LI+ LC
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLC 271

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              ++ EA +L   M+  GI  +LVTYN LI          SA  L  ++     E ++ 
Sbjct: 272 KEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVI 331

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+G  +  + EEA K  +++   G  P V+TY+ L+ G+   G + +A KL   M
Sbjct: 332 SYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 391

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNE 195
           K  G   +S ++   + G L KN+
Sbjct: 392 KAHGIAENSYTYGIFLDG-LCKND 414



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 10/138 (7%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-----LQTLERDKYELNIEV 112
            A+  F  M+    T  L ++N L+    + +      +L     L  L  D+  LNI  
Sbjct: 52  HALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNI-- 109

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
              +++ LC V R  E       +  +G  P +VTYN LI GLC +  I EA +L ++M+
Sbjct: 110 ---LLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 173 EKGCFPDSTSFNTVIQGF 190
           + GC PD  ++ T+I+G 
Sbjct: 167 KLGCTPDVVTYGTLIKGL 184



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQGRFSAMALL 98
           ++ L++GL       +   L+++M   G++++  T N L++     N  ++G F+A A  
Sbjct: 72  FNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREG-FAAFA-- 128

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + R  Y  NI  Y+ +I GLC   R  EA +   ++ + G  P VVTY  LI GLC  
Sbjct: 129 -GILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGT 187

Query: 159 GMIMEADKLLVQM------KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G I  A KL  +M       E  C P+  ++N ++ G       D A    ++
Sbjct: 188 GNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240



 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/107 (20%), Positives = 49/107 (45%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     + R     ++  ++ ++ GL ++  + +     +Q+   GL     T NIL+N
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            LC    + E       +  +G  P+  ++NT+I+G  +++    A+
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEAT 159



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCTFNR 55
           L+ +  + N   Y I I+G C+  ++D A   I+K    G   D+  Y++L+ G    N+
Sbjct: 461 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 520

Query: 56  LKEAVELFDKMVAQGITAELVT 77
           L+E V+L  +M  + ++ + +T
Sbjct: 521 LEEVVQLLHRMAQKDVSPDAIT 542


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I+G+ K  +++ A K        GI      Y+ +I+G+C    L EA+ELF  M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G      T+N LI D   K+G+   A  LL+ +  D +  ++  YS +I GLC + R 
Sbjct: 248 SKGCRPSRFTFNILI-DAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++AR  L+ + ++   P VVT N LI+GLCK G I EA ++L  M   G  PD  ++NT+
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 187 IQGFLVKNETDRASSFLK 204
           + G     +T+RA   L 
Sbjct: 367 VHGHCRAGQTERARELLS 384



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 47/204 (23%)

Query: 6   QRFKGNFHV-----YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +R   + HV     Y   I+G+C I  +D A       +K+     V   ++LI+GLC  
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+KEA E+ D MV+ G + ++VTYN L+H                              
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVH------------------------------ 368

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                G CR G+ E AR+ L  +  +GL P VVTY  L++GLCK   + EA  +  QMK 
Sbjct: 369 -----GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 423

Query: 174 KGCFPDSTSFNTVIQGFLVKNETD 197
            GC P+  ++  +I GF    + D
Sbjct: 424 SGCAPNLFTYTALILGFCSAGQVD 447



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+  CK   ++ A       I+ G   DV  Y+++++GLC  +R++EA+ LF++M
Sbjct: 82  TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G T    ++N +I    ++     A  +   +E      +   Y ++IDGL + G+ 
Sbjct: 142 ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKL 201

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++ + G+ P  VTYN++I+G+C    + EA +L   M+ KGC P   +FN +
Sbjct: 202 NEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNIL 261

Query: 187 IQGFLVKNETDRASSFLKK 205
           I     + + D A   LK+
Sbjct: 262 IDAHCKRGKLDEAFRLLKR 280



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++ +  D + Y  LI+GL    +L +A  LF K++  G+T   V Y  LIH         
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L   + R     +   Y+++ID  C+ G  EEA   + ++ E G VP VVTYN ++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +GLCK   + EA  L  +M+  GC P+  S NT+I G   +++ D+A
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 169



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    +   YGI I+G+ K  +++ A       +  G+      Y+SLI+GLC  N 
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A ELF  M  +G     VTYN +I  + ++     A  L++ +  D +  ++  Y+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+DGLC+  R EEA    +++   G  P   ++N +I GLC++  I +A ++  +M+ K 
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PDS S+  +I G     + + A    ++
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQR 210



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   ++ A+       + G   +   ++++I GLC  +++ +A ++F +M
Sbjct: 117 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+ I  +  +Y  LI D   K G+ + A  L Q +       +   Y++VI G+C    
Sbjct: 177 EAKDIPPDSWSYGILI-DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA +    +  KG  P   T+NILI+  CK+G + EA +LL +M + G  PD  +++T
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G       D A   L+
Sbjct: 296 LISGLCSIARVDDARHLLE 314



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y   ++G+CK   +  A          G   ++F Y++LI G C+  
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--- 111
           ++   ++LF +MV  GI+ + V Y  L  +   K GR SA AL + L   +  L  E   
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTLAAE-LCKSGR-SARAL-EILREGRESLRSEAWG 501

Query: 112 --VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             VY   +DGL   G+ E A   +  +   G +P       L+ GLCK G   EA  +L 
Sbjct: 502 DEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE 561

Query: 170 QM 171
           ++
Sbjct: 562 EI 563


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 106/193 (54%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I+G+ KI  +D A         KGI L+V VYSSLI+G     R+ EA  + ++M
Sbjct: 131 TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+   + T+N L+    + +    A+   Q+++  K   N   YS++I+GLCRV ++
Sbjct: 191 MKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A     ++ ++GLVP VVTY  +I+GL K G I +A  L  + K  G  PD+ SFN +
Sbjct: 251 NKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNAL 310

Query: 187 IQGFLVKNETDRA 199
           I+G    N    A
Sbjct: 311 IEGMSHANRAIEA 323



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE  S      ++G  LD   Y+++++G C   
Sbjct: 49  DIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSG 108

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A E  ++M  + +   + TY  +I D   K  R   A  L +  +    ELN+ VY
Sbjct: 109 KVDKAYEALEEMKVKHVPPTVATYGSII-DGLAKIDRLDEAYMLFEEAKSKGIELNVIVY 167

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 168 SSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKE 227

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P++ +++ +I G     + ++A  F ++
Sbjct: 228 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQE 259



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 11/212 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           F   +QR F  +   Y   ++G CK  ++D A +       K +   V  Y S+I+GL  
Sbjct: 82  FHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAK 141

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
            +RL EA  LF++  ++GI   ++ Y+ LI D + K GR   A  +L+ + +     N+ 
Sbjct: 142 IDRLDEAYMLFEEAKSKGIELNVIVYSSLI-DGFGKVGRIDEAYLILEEMMKKGLAPNVY 200

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ ++D L +     EA      + E    P   TY+ILINGLC+     +A     +M
Sbjct: 201 TWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEM 260

Query: 172 KEKGCFPDSTSFNTVIQGFL-VKNETDRASSF 202
           +++G  P+  ++ T+I G   V N TD  S F
Sbjct: 261 QKQGLVPNVVTYTTMISGLAKVGNITDACSLF 292



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 88/175 (50%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   D+ + ++ ++ +     +++   +F+ +   G   ++ +Y+ LIH   +     
Sbjct: 17  RRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQAR 76

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
              ++   +++  + L+   Y+ V+DG C+ G+ ++A + L+++  K + P V TY  +I
Sbjct: 77  ETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSII 136

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +GL K   + EA  L  + K KG   +   ++++I GF      D A   L++ M
Sbjct: 137 DGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 191



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 57/109 (52%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           + + + R   + ++ + +  +D + + G  E+ R   + +   G +P V +Y+ILI+GL 
Sbjct: 11  IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLT 70

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K G   E   +   MK++G   D+ ++N V+ GF    + D+A   L++
Sbjct: 71  KAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEE 119


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G+CK + +D AI        K +  +   ++SLI+GLC   R+    +L DKM 
Sbjct: 352 YTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMR 411

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +   A+++TY+ LI    +      A+AL + +   + + ++  Y+++IDGLC+ GR +
Sbjct: 412 DRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLK 471

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A++    L  KG    + TY ++I+G CK G+  EA  LL +M++ GC P++ +F+ +I
Sbjct: 472 IAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIII 531

Query: 188 QGFLVKNETDRASSFLKK 205
                K+E D+A   L++
Sbjct: 532 CALFEKDENDKAEKLLRE 549



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E+  K +  +Y I I+ +CK + +  A         K I  +V  Y++LI G C   
Sbjct: 199 NLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMG 258

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVY 113
            L EAV L ++M  + I  ++ T++ LI D   K+G+  A  ++  +    Y + ++  Y
Sbjct: 259 CLIEAVALLNEMKLKNINPDVYTFSILI-DALGKEGKMKAAKIVLAVMMKAYVKPDVVTY 317

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DG   V   + A+   + +++ G+ PGV +Y I+I+GLCK  M+ EA  L  +MK 
Sbjct: 318 NSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKH 377

Query: 174 KGCFPDSTSFNTVIQGF 190
           K   P++ +FN++I G 
Sbjct: 378 KNVIPNTITFNSLIDGL 394



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK   I       D    +    DV  YSSLI+ LC    L +A+ LF KM+ Q I
Sbjct: 391 IDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEI 450

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++ TY  LI D   K GR   A  + Q L    Y L+I  Y+++I G C+ G ++EA 
Sbjct: 451 QPDMYTYTILI-DGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEAL 509

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             L ++ + G +P  +T++I+I  L +K    +A+KLL +M  +G
Sbjct: 510 ALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARG 554



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 10/193 (5%)

Query: 8   FKG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLK 57
           FKG   +     I IN  C + +I        + +K+G   DV   ++LI GLC    +K
Sbjct: 97  FKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVK 156

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A++  D +VA     + ++Y  LI+   +     +A+ L++ LE    + ++ +Y+++I
Sbjct: 157 KALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIII 216

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D LC+     EA     +++ K + P VVTY  LI G C  G ++EA  LL +MK K   
Sbjct: 217 DSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNIN 276

Query: 178 PDSTSFNTVIQGF 190
           PD  +F+ +I   
Sbjct: 277 PDVYTFSILIDAL 289



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C   E+  A+K           LD   Y +LINGLC     K A++L   +  + I
Sbjct: 146 IKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSI 205

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++V YN +I    + +    A  L   +   +   N+  Y+ +I G C +G   EA  
Sbjct: 206 KPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVA 265

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++  K + P V T++ILI+ L K+G +  A  +L  M +    PD  ++N+++ G+ 
Sbjct: 266 LLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYF 325

Query: 192 VKNETDRA 199
           + NE   A
Sbjct: 326 LVNEVKHA 333



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++ + K++   +AI        KGI  D+   + LIN  C   ++  +  +   ++ +G 
Sbjct: 76  LSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGY 135

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +++T   LI     +     A+     +   +++L+   Y  +I+GLC++G  + A +
Sbjct: 136 HPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQ 195

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +  L E+ + P VV YNI+I+ LCK  ++ EA  L  +M  K  +P+  ++ T+I GF 
Sbjct: 196 LMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFC 255

Query: 192 V 192
           +
Sbjct: 256 I 256



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+SL++G    N +K A  +F+ M   G+T  + +Y  +I    + +    A++L 
Sbjct: 313 DVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLF 372

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++      N   ++ +IDGLC+ GR       +D++ ++  +  V+TY+ LI+ LCK 
Sbjct: 373 EEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKN 432

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             + +A  L  +M  +   PD  ++  +I G 
Sbjct: 433 CHLDQAIALFKKMITQEIQPDMYTYTILIDGL 464



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  L ++ R+  A      L  KG+   +VT NILIN  C  G I  +  +L  + ++G
Sbjct: 75  ILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRG 134

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             PD  +  T+I+G  ++ E  +A  F
Sbjct: 135 YHPDVITLTTLIKGLCLRGEVKKALKF 161



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           N   +AV LF++M+          +N ++    + Q   +A++L + L+      ++   
Sbjct: 48  NDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTL 107

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+  C +G+   +   L  + ++G  P V+T   LI GLC +G + +A K    +  
Sbjct: 108 NILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVA 167

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                D  S+ T+I G     ET  A   ++
Sbjct: 168 LEFQLDRISYGTLINGLCKIGETKAAIQLMR 198



 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q  + + + Y I I+G+CK   +  A       + KG  LD+  Y+ +I+G C    
Sbjct: 445 MITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGL 504

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA+ L  KM   G     +T++ +I   +EK     A  LL+ +
Sbjct: 505 FDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREM 550


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 7/182 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   ++ A+       +KGI + V+ Y+SLING C  N   +A  L ++M
Sbjct: 88  TYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEM 147

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           VA+G+T    +Y+PLI     K    SAM L + + R+    N+  ++ +I G C+ G  
Sbjct: 148 VAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNM 207

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +   ++ E  LVP  VT+N++I G C+ G I +A +L  QM ++G  PD+ ++ ++
Sbjct: 208 DEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSL 267

Query: 187 IQ 188
           I 
Sbjct: 268 IS 269



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 2/209 (0%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           F    Q+    + + G R++G      R      K GI  ++   ++ I+ L    R +E
Sbjct: 10  FSWIHQKHNWAWKLRGKRMSGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYRE 69

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +LF  M  +G+    VTY  LIH   ++     A+ +   +      + +  Y+ +I+
Sbjct: 70  AEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLIN 129

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+   + +AR  L+++  KGL P   +Y+ LI GLC+KG +  A +L  +M       
Sbjct: 130 GYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSG 189

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +  +F  +I GF      D A+    K M
Sbjct: 190 NVYTFTALISGFCKDGNMDEATRLFHKMM 218



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 11/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T     GN + +   I+G CK   +D A       ++  +  +   ++ +I G C   
Sbjct: 181 EMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVG 240

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+M+ +G+T +  TY  LI       G   A   +  LE +   LN    +
Sbjct: 241 NIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLENNCAVLNSFSLT 300

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G  E   K   ++     +P   TYN  ++ L  +G + +A  L   M E 
Sbjct: 301 ALMHGFCKEGSAEILCK---EMLAGHFLPNSYTYNCFLDYLANEGELEKAKVLHAAMLE- 356

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
           GC  ++ +FNT+I+GF +  +   A   ++KN
Sbjct: 357 GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKN 388



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           L+ F  ++L++G C   +   A  L  +M+A        TYN  + D    +G      +
Sbjct: 294 LNSFSLTALMHGFC---KEGSAEILCKEMLAGHFLPNSYTYNCFL-DYLANEGELEKAKV 349

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L     +    N   ++ +I G C  G+ + A   + + +E G  P  ++Y+ +IN LCK
Sbjct: 350 LHAAMLEGCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINELCK 409

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   +A +L  +M  KG  PD  ++  +I+   +  E D+ 
Sbjct: 410 VGDTNKAFELWNEMLYKGLKPDIVAYTILIRWCNIHGEFDKG 451


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ++G+ KI  +D A         KGI L+V +YSSLI+G     R+ EA  + ++M
Sbjct: 632 TYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEM 691

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+T  + T+N L+    + +    A+   Q+++  K   N   YS++I+GLCRV ++
Sbjct: 692 MKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 751

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A     ++ ++GL+P VVTY  +I+GL K G I +A  L  + K  G  PDS SFN +
Sbjct: 752 NKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNAL 811

Query: 187 IQGF 190
           I+G 
Sbjct: 812 IEGM 815



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 110/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAIK----KGICLDVFVYSSLINGLCTFN 54
           D+    F  +   Y I I+G+ K    RE  +  +    +G  LD   Y+++++GLC   
Sbjct: 550 DMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSG 609

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A E+ ++M  + +   + TY  ++ D   K  R   A  L +  +    ELN+ +Y
Sbjct: 610 KVDKAYEVLEEMKVKHVHPTVATYGSIV-DGLAKIDRLDEAYMLFEEAKSKGIELNVILY 668

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L+++ +KGL P V T+N L++ L K   I EA      MKE
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE 728

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P++ +++ +I G     + ++A  F ++
Sbjct: 729 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQE 760



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            + Y+++I G  +  R  +A +L +++  +G    +V++N ++    +K+    A+ L  
Sbjct: 316 AYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFD 375

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++D  + NI  Y+++ID LC  GR  EA K  D++   GL P +++ NI+++ LCK  
Sbjct: 376 VMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKAN 434

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA ++     E+GC P+S ++ ++I G   K + D A    +K
Sbjct: 435 QLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEK 480



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y + I  + + R+ + A++        G  + V ++++L+  L    +++ A
Sbjct: 171 KFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPA 230

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D++    +  ++V YN  I D + K G    A      L+      +   Y+ ++ 
Sbjct: 231 LALVDEVKGSCLEPDIVLYNVCI-DCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  EA +   Q+  +  VP    YN +I G        +A KLL +++E+GC P
Sbjct: 290 VLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIP 349

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              SFN+++     K + D A
Sbjct: 350 SVVSFNSILTCLGKKRKVDEA 370



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 44/248 (17%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           FD+ ++  K N   Y I I+ +C    ++ A K        G+  ++   + +++ LC  
Sbjct: 374 FDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKA 433

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
           N+L+EA  +F+    +G     VTY  LI D   K+G+   A  L + +    ++ N  +
Sbjct: 434 NQLEEAHRIFESASERGCNPNSVTYCSLI-DGLGKKGKIDDAYRLFEKMLDAGHDANPII 492

Query: 113 YSLVI-----------------------------------DGLCRVGRWEEARKKLDQLS 137
           Y+ +I                                   D + + G  E+ R   + + 
Sbjct: 493 YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMK 552

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             G +P V +Y+ILI+GL K G   E   +   M ++G   D+ ++N V+ G     + D
Sbjct: 553 SFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVD 612

Query: 198 RASSFLKK 205
           +A   L++
Sbjct: 613 KAYEVLEE 620



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E + KG   N  +Y   I+G  K+  ID A       +KKG+  +V+ ++SL++ L    
Sbjct: 655 EAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTE 714

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+  F  M     +    TY+ LI+     Q    A    Q +++     N+  Y+
Sbjct: 715 EIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYT 774

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL +VG   +A    ++    G +P   ++N LI G+      MEA ++  + + +
Sbjct: 775 TMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLR 834

Query: 175 GC 176
           GC
Sbjct: 835 GC 836



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NF ++G + +G    +E+   I++G   D+ + ++ ++ +     +++   +F+ M + G
Sbjct: 499 NFFMHGRKEDGHKIYKEM---IRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFG 555

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
              ++ +Y+ LIH    K G+    + + Q + +  + L+   Y+ V+DGLC+ G+ ++A
Sbjct: 556 FLPDVRSYSILIH-GLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKA 614

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L+++  K + P V TY  +++GL K   + EA  L  + K KG   +   ++++I G
Sbjct: 615 YEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDG 674

Query: 190 FLVKNETDRASSFLKKNM 207
           F      D A   L++ M
Sbjct: 675 FGKVGRIDEAYLILEEMM 692



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ LI  L    + + A+EL  +M   G    +  +  L+     +     A+AL+  +
Sbjct: 178 AYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEV 237

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +    E +I +Y++ ID   + G  + A K   +L   GL P  V+Y  ++  LCK G +
Sbjct: 238 KGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRL 297

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA++L  QM+ +   P + ++NT+I G+      D A   L++
Sbjct: 298 GEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLER 341



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+  L    RL++A  +   M           Y  LI    E +    A+ LL+ ++ 
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQD 204

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             YE+++ +++ ++  L R G+ E A   +D++    L P +V YN+ I+   K G +  
Sbjct: 205 VGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDM 264

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVI 187
           A K   ++K  G  PD  S+ +++
Sbjct: 265 AWKFFHELKAHGLRPDDVSYTSMV 288


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 42/245 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREI-DSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   Y + ++G C      + R I DS I KGI  D+  Y++LING     +
Sbjct: 309 MIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKK 368

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH---------------DNWEKQGRFS------- 93
           + +A++LF ++   G+   +VT + L+                D  +  G          
Sbjct: 369 MDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCT 428

Query: 94  -------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
                        AM+    LER + + NI++Y+ VI+GLC+ G+ ++A    ++L   G
Sbjct: 429 LLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIG 488

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           L P V+TY  +I+G C++G++ EA  +L +M++ GC PD+ ++N +++GF   ++     
Sbjct: 489 LHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMK 548

Query: 201 SFLKK 205
           +FLK+
Sbjct: 549 AFLKE 553



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 15/203 (7%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +YG  ++G+CK      A      +++GI   D  +Y+ +I+  C    L  A  L ++M
Sbjct: 180 MYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEM 239

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE----VYSLVIDGLCR 122
             + I  +++TY  LI    +  G+ S    ++TL  +   LNI      ++ VIDGLC+
Sbjct: 240 KQKNIPPDIITYTSLI----DGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCK 295

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+A + +  + EKG+ P  +TYN++++G C +G +  A ++   M +KG  PD  S
Sbjct: 296 EGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIIS 355

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I G++ K + D+A    ++
Sbjct: 356 YTALINGYVEKKKMDKAMQLFRE 378



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 101/171 (59%), Gaps = 5/171 (2%)

Query: 32  IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNWEKQ 89
           +++ IC  D  +Y ++++GLC     ++A +L  +++ QGIT  +   YN +I D + K 
Sbjct: 169 VRENICEPDEVMYGTVMDGLCKKGHTQKAFDLL-RLMEQGITKPDTCIYNIVI-DAFCKD 226

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A +LL  +++     +I  Y+ +IDGL ++ +WE+ R    ++    + P V T+
Sbjct: 227 GMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTF 286

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N +I+GLCK+G + +A++++  M EKG  P+  ++N V+ G+ ++ +  RA
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRA 337



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I +D F  S+++N  C  +R      +      +GI    VT+  LI   + +     A+
Sbjct: 103 IPVDAFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAV 162

Query: 96  ALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILIN 153
            L + L R+   E +  +Y  V+DGLC+ G  ++A   L +L E+G+  P    YNI+I+
Sbjct: 163 HLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLL-RLMEQGITKPDTCIYNIVID 221

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             CK GM+  A  LL +MK+K   PD  ++ ++I G 
Sbjct: 222 AFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGL 258



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  LF +MV        V+++ L+      +   S +++ + + + +  ++    S 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEK 174
           V++  C + R +     L    +KG+    VT+  LI GL  +  + +A  L  ++ +E 
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            C PD   + TV+ G   K  T +A   L+
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLR 202



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 35/137 (25%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++ +Y+++INGLC   +L +A   F+K+   G+  +++TY  +                 
Sbjct: 457 NIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAM----------------- 499

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                             I G C+ G  +EA+  L ++ + G +P   TYN+++ G  + 
Sbjct: 500 ------------------ISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRS 541

Query: 159 GMIMEADKLLVQMKEKG 175
             + E    L ++  K 
Sbjct: 542 SKVSEMKAFLKEIAGKS 558



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           L  +R   N  +Y   ING+CK  ++D A          G+  DV  Y+++I+G C    
Sbjct: 449 LERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGL 508

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA ++  KM   G   +  TYN ++   +         A L+ +    +        L
Sbjct: 509 LDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVEL 568

Query: 116 VID 118
           ++D
Sbjct: 569 LMD 571


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L     K +  +Y   I+ +CK + +  A       I KGI  +VF Y++LI+G C    
Sbjct: 192 LEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGN 251

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---------------------- 93
           LKEA  L ++M  + I  ++ T+N LI D   K+G+                        
Sbjct: 252 LKEAFSLLNEMKLKNINPDVYTFNILI-DALAKEGKIDEAMSLFEEMKHKNMFPNIVTYT 310

Query: 94  --------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                         A+AL + ++    + N+  Y++++D LC+ GR E A++    L  K
Sbjct: 311 SLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVK 370

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G    V TYN++INGLCK G+  +   L  +M+ KGC P++ +F T+I   L K+E D+A
Sbjct: 371 GYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKA 430

Query: 200 SSFLKK 205
             FL++
Sbjct: 431 EKFLRE 436



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            I IN  C +  I  A       +K+G   +    ++LI GLC    +K A+   DK+VA
Sbjct: 100 SILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVA 159

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           QG   + V+Y  LI +   K G   A+A LL+ LE    + ++ +Y+ +I  LC+     
Sbjct: 160 QGFQLDQVSYGTLI-NGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLG 218

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A     ++  KG+ P V TY  LI+G C  G + EA  LL +MK K   PD  +FN +I
Sbjct: 219 DACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILI 278

Query: 188 QGFLVKNETDRASSFLK----KNM 207
                + + D A S  +    KNM
Sbjct: 279 DALAKEGKIDEAMSLFEEMKHKNM 302



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + K    + + + I I+ + K  +ID A+        K +  ++  Y+SLI+GLC 
Sbjct: 259 LNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCK 318

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
            + L+ A+ L  KM  QGI   + +Y  L+ D   K GR  +A    Q L    Y LN+ 
Sbjct: 319 NHHLERAIALCKKMKEQGIQPNVYSYTILL-DALCKGGRLENAKQFFQHLLVKGYHLNVR 377

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+GLC+ G + +      ++  KG +P  +T+  +I  L +K    +A+K L +M
Sbjct: 378 TYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREM 437

Query: 172 KEKG 175
             +G
Sbjct: 438 IARG 441



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +++ ++  L +  R+        Q    G+ P + T +ILIN  C    I  A  +   +
Sbjct: 63  LFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANI 122

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++G  P++ + NT+I+G     E  RA  F  K
Sbjct: 123 LKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDK 156


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+  +++SA K       KG   +   Y+++I+GLC   R+ E + LF KM
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                   + TY  +IH  +        M L   +     E N+  Y++++D +C+  + 
Sbjct: 311 REDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKL 370

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +E+R+ L+++ EKGLVP VVTYN LI G C++G I  A ++L  M+   C P+  ++N +
Sbjct: 371 DESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNEL 430

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +    +A + L K
Sbjct: 431 ICGFSKRKHVHKAMTLLSK 449



 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 44/231 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + N H Y + ++ MCK R++D +       ++KG+   V  Y++LI G C   
Sbjct: 344 EMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEG 403

Query: 55  RLKEAVE-----------------------------------LFDKMVAQGITAELVTYN 79
           R++ A+E                                   L  KM+   +T  LVTYN
Sbjct: 404 RIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYN 463

Query: 80  PLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LIH    K G F SA  LL  L+ +    +   YS+ ID LC+  R EEA    + L E
Sbjct: 464 SLIHVQC-KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKE 522

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           KG+    V Y  LI+G CK G I EA  LL +M  + C P+S+++N++I G
Sbjct: 523 KGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYG 573



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E +   +   Y   I+  CK    DSA K        G+  D + YS  I+ LC   R
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKR 509

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA +LF+ +  +GI A  V Y  LI D   K G+   A++LL+ +  +    N   Y+
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYTALI-DGHCKAGKIDEAISLLERMHSEDCLPNSSTYN 568

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C+ G+ +E    ++ +S+ G+ P V TY ILI  + ++G    A+++  QM   
Sbjct: 569 SLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSF 628

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++   I  +        A   + +
Sbjct: 629 GHKPDVYTYTAFIHTYCTSGNVKEAEGMMAR 659



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +CK + ++ A        +KGI  +  +Y++LI+G C   ++ EA+ L ++M
Sbjct: 496 TYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM 555

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++       TYN LI+   ++      +++++ + +   +  +  Y+++I+ + R G +
Sbjct: 556 HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDF 615

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +  +Q+   G  P V TY   I+  C  G + EA+ ++ +M E G  PDS ++  +
Sbjct: 616 DHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLL 675

Query: 187 IQGF 190
           I  +
Sbjct: 676 ISAY 679



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNR 55
           L E+  K N  +Y   I+G CK  +ID AI          CL +   Y+SLI G+C   +
Sbjct: 520 LKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGK 579

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           ++E + + + M   G+   + TY  LI +   ++G F  A  +   +    ++ ++  Y+
Sbjct: 580 VQEGLSMVENMSKMGVKPTVATYTILIEEML-REGDFDHANRVFNQMVSFGHKPDVYTYT 638

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I   C  G  +EA   + ++ E G++P  +TY +LI+   + G+  +A  +L +M + 
Sbjct: 639 AFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDA 698

Query: 175 GCFPDSTSFNTVI 187
           GC P    +N +I
Sbjct: 699 GCDPSHPIWNNLI 711



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 72/172 (41%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I  +++  ++++N       + EA     K+   G++ +  TY  LI          SA 
Sbjct: 210 IVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAY 269

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +   +       N   Y+ +I GLC  GR +E      ++ E    P V TY ++I+ L
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
                 +E   L  +M+E+ C P+  ++  ++     + + D +   L + M
Sbjct: 330 FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMM 381



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 97  LLQTLERD----KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            L+ + RD    K++L++  Y+ ++  L R    +E ++   ++    +VP + T N ++
Sbjct: 162 FLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMV 221

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N   K G I+EA+  + ++ + G  PDS ++ ++I G+   N+ + A
Sbjct: 222 NAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSA 268


>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
          Length = 225

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +  +C  R  D A+         G+  DV  Y +LI GLC    + +AVEL  +M   GI
Sbjct: 1   MRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGI 60

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +V Y+ L+   + K GR+  +  +   +     E ++ +Y+ +ID LC+VG+ ++A 
Sbjct: 61  EPNVVVYSSLLQ-GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 119

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +D +  +GL P VVTYN+LIN +CK+G + EA  +L +M EKG  PD  ++NT+I+G 
Sbjct: 120 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 179

Query: 191 LVKNETDRASSFLKK 205
               E D A   L++
Sbjct: 180 SDVLEMDEAMWLLEE 194



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 14/191 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            + +   YG  I G+C   E+D A++        GI  +V VYSSL+ G C   R ++  
Sbjct: 25  VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVG 84

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           ++F +M  +GI  ++V Y  LI D+  K G+   A  ++  + R   E N+  Y+++I+ 
Sbjct: 85  KVFVEMSEKGIEPDVVMYTGLI-DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 143

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE--KGCF 177
           +C+ G  +EA   L ++SEKG+ P VVTYN LI GL     ++E D+ +  ++E  +G  
Sbjct: 144 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD---VLEMDEAMWLLEEMVRGYI 200

Query: 178 PDSTSFNTVIQ 188
             S+  + + Q
Sbjct: 201 IQSSQQSAIAQ 211


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 10/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD + E  ++ N  +Y   I+G+CK +++D+A+         GI  D   Y+SLI+GLC 
Sbjct: 174 FDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCN 233

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             R  +A  +   M  + I  ++ T+N LI D   K+GR S A  L + + R   + +I 
Sbjct: 234 SGRWDDATRMVSCMTKREIYPDVFTFNALI-DACVKEGRISEAEELYEEMIRRSLDPDIV 292

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YSL+I GLC   R +EA +    +  KG  P VVTY+ILING CK   +    KL  +M
Sbjct: 293 TYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            ++G   ++ ++  +IQG+    + + A    K
Sbjct: 353 SQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 15/194 (7%)

Query: 1   FDLTEQRF-----KGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSS 45
            D  EQ F     KG F     Y I ING CK ++++  +K       +G+  +   Y+ 
Sbjct: 307 LDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTV 366

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           LI G C   +L  A E+F  MV  G+   ++TYN L+H   +      A+ +L  +++  
Sbjct: 367 LIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSG 426

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            + +I  Y+++I G+C+ G   +A      L+ KGL P + TY  ++ GL KKG+  EAD
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEAD 486

Query: 166 KLLVQMKEKGCFPD 179
            L  +MKE G  P+
Sbjct: 487 ALFRKMKEDGILPN 500



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I +N  C+  ++  A+       K G   D+  + SL+NG C  +R+ +A+ +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMF 174

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G    +V YN +I    + +   +A+ LL  +E D    +   Y+ +I GLC  
Sbjct: 175 DRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNS 234

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GRW++A + +  ++++ + P V T+N LI+   K+G I EA++L  +M  +   PD  ++
Sbjct: 235 GRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTY 294

Query: 184 NTVIQGFLVKNETDRA 199
           + +I G  + +  D A
Sbjct: 295 SLLIYGLCMYSRLDEA 310



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ +  D+  YS LI GLC ++RL EA ++F  MV++G   ++VTY+ LI+   + +  
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              M L   + +     N   Y+++I G CR G+   A +    +   G+ P ++TYN+L
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVL 402

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++GLC  G I +A  +L  M++ G   D  ++N +I+G     E   A
Sbjct: 403 LHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADA 450



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +    +   Y + I G+C    +D A       + KG   DV  YS LING C   
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSK 340

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +++  ++LF +M  +G+    VTY  LI   + + G+ + A  + + +       NI  Y
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTVLIQ-GYCRAGKLNVAEEIFKWMVFCGVPPNIITY 399

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++ GLC  G+ E+A   L  + + G+   +VTYNI+I G+CK G + +A  L   +  
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNL 459

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  PD  ++  ++ G   K     A +  +K
Sbjct: 460 KGLTPDIWTYTAMMLGLYKKGLRGEADALFRK 491


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 22/198 (11%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+++D A+        K I  +V  Y+SLI+GL    R+  A++L D+M 
Sbjct: 338 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH 397

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   ++TYN +I   ++      A+AL+   +    + ++  Y+++IDGLC+V  ++
Sbjct: 398 DRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYD 457

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
                            V TYN++I+G CKKG+  EA  LL +MK+  C P++ ++   I
Sbjct: 458 IT---------------VNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITI 502

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L  NE D+A    ++
Sbjct: 503 RSLLDNNENDKAEKLFRE 520



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 21/204 (10%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  I+G+CK+ E  +A+        K + L+  +Y+++I G+C    + +A 
Sbjct: 156 FHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAF 215

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-----LQTLERDKYELNIEVYSL 115
           +L+ +MV++GI+  +VTY+ LI   +       A+ L     L+ ++ D Y  NI     
Sbjct: 216 DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI----- 270

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+  + +E +     + ++G++P VVTYN L++G C    +  A  +   M + G
Sbjct: 271 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGG 330

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  S+N +I GF    + D+A
Sbjct: 331 VNPDIRSYNILINGFCKIKKVDKA 354



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 23  CKIREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           C+I +     D  +  G  LD   Y +LI+GLC     + A++L  ++  + +    V Y
Sbjct: 139 CQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 198

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N +I+   + +    A  L   +       N+  YS +I G   VG+ ++A    +++  
Sbjct: 199 NTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIIL 258

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           + + P   T+NIL++G CK   + E   +   M ++G  PD  ++N+++ G+ +  E + 
Sbjct: 259 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNT 318

Query: 199 ASS 201
           A S
Sbjct: 319 AKS 321



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 34  KGICLDVFVYSSLINGLCTFN----RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           +GI  ++F  + LI   C       ++ +A    DK+VA G   + V+Y  LIH   +  
Sbjct: 115 RGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVG 174

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              +A+ LLQ ++    +LN  +Y+ VI G+C+     +A     ++  KG+ P VVTY+
Sbjct: 175 ETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 234

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            LI+G    G + +A  L  ++  +   PD  +FN ++ GF
Sbjct: 235 ALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 275



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 39/189 (20%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YSS      + N + +AV LF++++ Q  T     +N ++    + +   + ++L Q +E
Sbjct: 54  YSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKME 113

Query: 103 ----------------------------------RDK-----YELNIEVYSLVIDGLCRV 123
                                              DK     + L+   Y  +I GLC+V
Sbjct: 114 FRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKV 173

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   L ++  K +    V YN +I G+CK   + +A  L  +M  KG  P+  ++
Sbjct: 174 GETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 233

Query: 184 NTVIQGFLV 192
           + +I GF V
Sbjct: 234 SALISGFFV 242



 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           +Q  + + + Y I I+G+CK+   D        + V  Y+ +I+G C      EA+ L  
Sbjct: 433 DQGIQPSMYTYTILIDGLCKVEGYD--------ITVNTYNVMIHGFCKKGLFDEALSLLS 484

Query: 65  KMVAQGITAELVTY 78
           KM         VTY
Sbjct: 485 KMKDSSCIPNAVTY 498


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   + G+CK  +ID A+K       G C  DV  YS+LI GLC   
Sbjct: 137 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTG 196

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL EA +LF+KM       ++VT+  L+ D   K  R   A  +L+T+E      N+  Y
Sbjct: 197 RLDEACKLFEKMRENSCEPDVVTFTALM-DGLCKGDRLQEAQQVLETMEDRNCTPNVITY 255

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGLC+ G+  +A++   ++  +G+ P VVTYN LI+G C    +  A  L+ +M  
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 315

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC PD  ++NT+I G 
Sbjct: 316 TGCLPDIITYNTLIDGL 332



 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+CK   +  A +       +    +V  YSSLI+GLC   ++++A E+F +M+ +GI
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN LIH      G  SA+ L++ +       +I  Y+ +IDGLC+ GR  EA +
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               +  K   P V+TY+ LI G CK   I  A  L   M ++   PD  +F+T+++G+ 
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 403

Query: 192 VKNETDRASSFLKK 205
                D A   L++
Sbjct: 404 NAGLVDDAERLLEE 417



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 92/168 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  ++ +I+GLC  NRL EA   F KM  +G      TYN LI+   +      A  LL
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++      N+  YS VI G CR  + + A K   Q+ E G +P +VTYN L++GLC+ 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
           G++ EA +LL +M+E+G  PD  S++T++ G     + D A    + N
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 173



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK      A      +K   C  DV  YS LI G C   R+  A  LFD M
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + Q +  ++VT++ L+           A  LL+ +       ++  Y+ ++DG C+VGR 
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EAR+ L +++++G  P VVTY  LI+  C+ G    A KLL +M   G  P+  ++ ++
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF    + + A   L++
Sbjct: 504 IGGFCGTGDLEEARKMLER 522



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I+G+CK   +  A        KKG   + + Y+ LING C  +++  A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+   +VTY+ +IH    +    +A  L + +  +    N+  Y+ ++ GLCR 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA + LD++ E+GL P   +Y+ L+ GLCK G I  A K+        C PD  ++
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +T+I G       D A    +K
Sbjct: 186 STLIAGLCKTGRLDEACKLFEK 207



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+C+   +D A +       +G+  D F Y +L+ GLC   ++  A+++F
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +         ++V Y+ LI     K GR   A  L + +  +  E ++  ++ ++DGLC+
Sbjct: 171 EDNSNGDCPPDVVAYSTLIA-GLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R +EA++ L+ + ++   P V+TY+ LI+GLCK G + +A ++  +M  +G  P+  +
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289

Query: 183 FNTVIQGFLVKNETDRA 199
           +N++I GF + N  D A
Sbjct: 290 YNSLIHGFCMTNGVDSA 306



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   I+G C+  ++D+A       ++ G   ++  Y++L++GLC   
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA EL D+M  +G+  +  +Y+ L+     K G+   A+ + +         ++  Y
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMA-GLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I GLC+ GR +EA K  +++ E    P VVT+  L++GLCK   + EA ++L  M++
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + C P+  +++++I G     +   A    K+
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 277



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 13/200 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK+  ID A       +K+ +  DV  +S+L+ G C    + +A  L ++M
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA   + ++ TY  L+ D + K GR   A  +L+ + +   + N+  Y+ +ID  CR G+
Sbjct: 419 VASDCSPDVYTYTSLV-DGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFN 184
              A K L+++   G+ P V+TY  LI G C  G + EA K+L ++ +++ C  D  ++ 
Sbjct: 478 PTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYR 537

Query: 185 TVIQGFLVKNETDRASSFLK 204
            ++ G      T R S+ L+
Sbjct: 538 VMMDGLC---RTGRMSAALE 554



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +Q    +   +   + G C    +D A       +      DV+ Y+SL++G C   
Sbjct: 382 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVG 441

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ EA  +  +M  +G    +VTY  LI D + + G+ + A  LL+ +  +  + N+  Y
Sbjct: 442 RMVEARRVLKRMAKRGCQPNVVTYTALI-DAFCRAGKPTVAYKLLEEMVGNGVQPNVITY 500

Query: 114 SLVIDGLCRVGRWEEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
             +I G C  G  EEARK L++L  ++     +  Y ++++GLC+ G +  A +LL  +K
Sbjct: 501 RSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 560

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  P    +  +I+G     E  +A   L++
Sbjct: 561 QSGTPPRHDIYVALIRGLCQGKELGKAMEVLEE 593



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   ++G CK+       R +    K+G   +V  Y++LI+  C   +   A +L 
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCR 122
           ++MV  G+   ++TY  LI           A  +L+ LERD+  + ++  Y +++DGLCR
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCR 545

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-EKGCFPDST 181
            GR   A + L+ + + G  P    Y  LI GLC+   + +A ++L +M   +   P++ 
Sbjct: 546 TGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 605

Query: 182 SFNTVIQGFLVKNETDRASSF 202
           ++  VIQ    +   + A++ 
Sbjct: 606 AYEAVIQELAREGRHEEANAL 626



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E N+  ++++IDGLC+  R  EA     ++ +KG VP   TYN+LING CK   +  A  
Sbjct: 4   EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL +MKE G  P+  +++TVI GF  + + D A    ++
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 102



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           + N   Y   I G C   +++ A K        +    D+F Y  +++GLC   R+  A+
Sbjct: 494 QPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 553

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ--TLERDKYELNIEVYSLVID 118
           EL + +   G       Y  LI    + +    AM +L+  TL R K   N E Y  VI 
Sbjct: 554 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSR-KSRPNAEAYEAVIQ 612

Query: 119 GLCRVGRWEEARKKLDQL 136
            L R GR EEA    D+L
Sbjct: 613 ELAREGRHEEANALADEL 630


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E   + N  +Y   ING+CK R++++A+       KKGI  D   Y++LI+GLC   R
Sbjct: 711 MAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
             +A  L   MV + I   ++ +  LI D + K+G    A  L + + R     NI  Y+
Sbjct: 771 WTDAARLLRDMVKRKIDPNVIFFTALI-DTFVKEGNLLEAKNLYKEMIRRSVHPNILTYN 829

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  GR  +A+   D +  KG  P VVTYN LI G CK   + +  KL  +M  +
Sbjct: 830 SLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQ 889

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D+ ++NT+I G+
Sbjct: 890 GLVGDAFTYNTLIHGY 905



 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +    G  +NG C+       +  +DS  + G+  +V +Y+++INGLC    L  A+
Sbjct: 681 FQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNAL 740

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           E+F  M  +GI A+ VTYN LI       GR++ A  LL+ + + K + N+  ++ +ID 
Sbjct: 741 EIFYGMEKKGIVADAVTYNTLI-SGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 799

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             + G   EA+    ++  + + P ++TYN LING C +G + +A  +   M  KGCFPD
Sbjct: 800 FVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD 859

Query: 180 STSFNTVIQGF 190
             ++NT+I GF
Sbjct: 860 VVTYNTLITGF 870



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 104/183 (56%), Gaps = 9/183 (4%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I G CK + ++  +K       +G+  D F Y++LI+G C   +L  A ++F++M
Sbjct: 862  TYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            V  G+  ++VTYN L+ D     G+   A+ +++ L++++ +++I  Y+++I G+CR  +
Sbjct: 922  VDCGVPPDIVTYNILL-DCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDK 980

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +EA      L+ KG+    + Y  +I+GLC+ G+  EADKL  +MKE G  P    ++ 
Sbjct: 981  VKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDE 1040

Query: 186  VIQ 188
             ++
Sbjct: 1041 TLR 1043



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 7/172 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK R ++  +K       +G+  D F Y++LI+G C   +L+ A ++F
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIF 369

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV+ G+T +++T+  L+H         SAM     +   +  L I  Y+++I GLC+ 
Sbjct: 370 SWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA 429

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            + EEA +   +L  +G+ P   TY I+I GLCK G   EAD+L  +MKE G
Sbjct: 430 DKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDG 481



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 10/197 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKG-ICLDVFVYSSLINGLCTFN 54
           + +  ++ N  VY   I+ +CK  +++ A+       KKG +  D+  Y++L+ GLC   
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
             ++A  +   M  + I  ++ T+  LI D + KQG    A  L + + +     N   Y
Sbjct: 221 EWRQAARILRDMTKRRINPDVFTFTALI-DAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+GLC  GR   A+K  D ++ KG  P VVTYN LING CK   + +  KL  +M  
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR 339

Query: 174 KGCFPDSTSFNTVIQGF 190
           +G   D+ ++NT+I G+
Sbjct: 340 EGLVGDTFTYNTLIHGY 356



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ LI+  C  +RL  A+ +  KM+  G    +VT+  L+H    +     A
Sbjct: 95  GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILIN 153
            +L+ ++ +  YE N+ VY+ +ID LC+ G    A + L+++ +KG L   +VTYN L+ 
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT 214

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC  G   +A ++L  M ++   PD  +F  +I  F+ +   D A    K+
Sbjct: 215 GLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQ 266



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 43/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + I I+  C+   +  A+       K G    +  + SL++G C  NR+ +A  L 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 64  DKMVAQGITAELVTYNPLIH---------------DNWEKQGRFS--------------- 93
             MV  G    +V YN LI                +  EK+GR +               
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 94  ------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  +L+ + + +   ++  ++ +ID   + G  +EA++   Q+ +  + P  VT
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVT 278

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN LINGLC  G +  A K    M  KGCFP+  ++NT+I GF
Sbjct: 279 YNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGF 321



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 90/168 (53%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ +  ++  Y+SLING C   RL +A  +FD MV++G   ++VTYN LI    + +  
Sbjct: 817 IRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 876

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              M L   +       +   Y+ +I G C+ G+   A+K  +++ + G+ P +VTYNIL
Sbjct: 877 EDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNIL 936

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++ LC  G I +A  ++  +++     D  ++N +IQG    ++   A
Sbjct: 937 LDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEA 984



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 10/215 (4%)

Query: 2    DLTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
            ++  +    N   Y   ING C            D  + KG   DV  Y++LI G C   
Sbjct: 815  EMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSK 874

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            R+++ ++LF +M  QG+  +  TYN LIH   +      A  +   +       +I  Y+
Sbjct: 875  RVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYN 934

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++D LC  G+ E+A   ++ L +  +   ++TYNI+I G+C+   + EA  L   +  K
Sbjct: 935  ILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994

Query: 175  GCFPDSTSFNTVIQGFL---VKNETDRASSFLKKN 206
            G   D+ ++ T+I G     ++ E D+  + +K++
Sbjct: 995  GVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 43/248 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+T++R   +   +   I+   K   +D A       ++  I  +   Y+SLINGLC   
Sbjct: 231 DMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHG 290

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL  A + FD M ++G    +VTYN LI+   + +     M L Q + R+    +   Y+
Sbjct: 291 RLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYN 350

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVP------------------------------- 143
            +I G C+VG+   A+     +   G+ P                               
Sbjct: 351 TLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSG 410

Query: 144 ----GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               G+V YNI+I+GLCK   + EA +L  ++  +G  PD+ ++  +I G L KN   R 
Sbjct: 411 EKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILG-LCKNGPRRE 469

Query: 200 SSFLKKNM 207
           +  L + M
Sbjct: 470 ADELFRRM 477



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           ++ ++  +   N+    + LF KM   GI+ +L ++  LIH  + +  RFS A+ALL  +
Sbjct: 618 FTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIH-CFCRCSRFSLALALLGKM 676

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  ++ +I     +++G C+  R++EA   +D ++E GL P VV YN +INGLCK   +
Sbjct: 677 MKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDL 736

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             A ++   M++KG   D+ ++NT+I G         A+  L+
Sbjct: 737 NNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLR 779



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           GI  D++ ++ LI+  C  +R   A+ L  KM+  G    +VT   L+ + + +  RF  
Sbjct: 645 GISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLL-NGFCQGNRFQE 703

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A++L+ ++     E N+ +Y+ VI+GLC+      A +    + +KG+V   VTYN LI+
Sbjct: 704 AVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLIS 763

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC  G   +A +LL  M ++   P+   F  +I  F+ +     A +  K+
Sbjct: 764 GLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKE 815



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           ++ L+  +    R +  +    +M   GI+ +L ++  LIH  + +  R S A+++L  +
Sbjct: 68  FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIH-CFCRCSRLSLALSILGKM 126

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  Y+ +I  +  ++ G C   R  +A   +  + + G  P VV YN LI+ LCK G +
Sbjct: 127 MKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDV 186

Query: 162 MEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLK 204
             A +LL +M++KG    D  ++NT++ G     E  +A+  L+
Sbjct: 187 NIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILR 230



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 2    DLTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
            DL + +   +   Y I I GMC   K++E      S  +KG+ LD   Y ++I+GLC   
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
              +EA +L  +M   G       Y+  + D++
Sbjct: 1015 LRREADKLCTRMKEDGFMPSERIYDETLRDHY 1046



 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+CK  +++ A +       +G+  D   Y+ +I GLC     +EA ELF +M
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRM 477

Query: 67  VAQGITAE 74
              GI  +
Sbjct: 478 KEDGIICQ 485


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 110/196 (56%), Gaps = 7/196 (3%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN +C++  +D A+       K GI  DV  +++LING+C   ++K AVEL+++MV  
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++++YN LI+          A+ + + +E++  + N+  Y+ +ID LC+     +A
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++  +G+ P  +TYN +++GLC  G + EA +L  +M++ GC PD  ++N +I  
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDS 312

Query: 190 FLVKNETDRASSFLKK 205
                  + A+ FL +
Sbjct: 313 LYKDRLVNDAADFLSE 328



 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+ +CK R ++ A       + +GI  D   Y+S+++GLC   +L EA  
Sbjct: 230 KPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATR 289

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +M   G   ++VTYN +I   ++ +    A   L  +       ++  Y+ ++ GLC
Sbjct: 290 LFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLC 349

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            +G+  EA +   ++ +KG  P VV YN +I+ LCK  ++ +A + L +M ++G  P++ 
Sbjct: 350 YLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAV 409

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +++T++ GF    + D A+   K+
Sbjct: 410 TYSTILHGFCNLGQLDEATQLFKE 433



 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ++G+C+   +  A        +KG+  +++ Y++L+NG C   ++ EA ++F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + MV +G   +L +YN LI+     +    A ALL  +   K   N   Y+ ++ GLC V
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A++   ++   G++P ++TY+IL+NGLCK G + EA KL   MKEK   PD   +
Sbjct: 562 GRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILY 621

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I+G  +  + + A     K
Sbjct: 622 TILIEGMFIGGKLEVAKGLFSK 643



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 108/198 (54%), Gaps = 7/198 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I I+ + K R ++ A       + +GI  DV  Y+++++GLC   +L EA+ 
Sbjct: 300 KPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIR 359

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF KM  +G   ++V YN +I    + +    AM  L  +       N   YS ++ G C
Sbjct: 360 LFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFC 419

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            +G+ +EA +   ++  + ++P  +T++IL++GLC++GM+ EA  +   M EKG  P+  
Sbjct: 420 NLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIY 479

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++N ++ G+ ++ + + A
Sbjct: 480 TYNALMNGYCLRCKMNEA 497



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+ +CK R ++ A       + +GI  +   YS++++G C   +L EA +
Sbjct: 370 KPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQ 429

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +MV + +    +T++ L+ D   ++G  S A  + +T+     E NI  Y+ +++G 
Sbjct: 430 LFKEMVGRNVMPNTLTFSILV-DGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGY 488

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   +  EARK  + +  KG  P + +YNILING C    + +A  LL QM  K   P++
Sbjct: 489 CLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNT 548

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+++G         A    KK
Sbjct: 549 VTYNTIMKGLCYVGRLLDAQELFKK 573



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+C     + A+       + G   +V  Y+++I+ LC    + +A++   +MV
Sbjct: 201 YNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMV 260

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +GI  + +TYN ++H          A  L + +E++  + ++  Y+++ID L +     
Sbjct: 261 GRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVN 320

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   L ++ ++G+ P VVTY  +++GLC  G + EA +L  +M++KGC PD  ++NT+I
Sbjct: 321 DAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTII 380

Query: 188 QGFLVKNETDRASSFLKK 205
                    + A  FL +
Sbjct: 381 DSLCKDRLVNDAMEFLSE 398



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + N + Y   +NG C   +++ A       + KG   D+  Y+ LING C   R
Sbjct: 469 MTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRR 528

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A  L  +M  + +T   VTYN ++           A  L + +        +  YS+
Sbjct: 529 MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSI 588

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++GLC+ G  +EA K    + EK L P ++ Y ILI G+   G +  A  L  ++   G
Sbjct: 589 LLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADG 648

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P   ++N +I+G L +  +D A    +K
Sbjct: 649 IQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 89/171 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   V+  + LIN LC  N +  AV ++ KM   GI  +++T+  LI+    +     A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   + R  +E ++  Y+ +I+GLC  G    A     ++ + G  P VVTYN +I+ 
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK  ++ +A   L +M  +G  PD+ ++N+++ G     + + A+   K+
Sbjct: 243 LCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKR 293



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ING C  R +D A         K +  +   Y++++ GLC   RL +A ELF
Sbjct: 512 DLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELF 571

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM + G+   L+TY+ L++   +      A+ L ++++  K E +I +Y+++I+G+   
Sbjct: 572 KKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIG 631

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ E A+    +LS  G+ P   TYN++I GL K+G+  EA +L  + K
Sbjct: 632 GKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWK 680



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 4/150 (2%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL-- 115
           +A+  F +M        +V +   +  +  K  ++S +  L   + D + +   VYSL  
Sbjct: 76  DALASFYRMARMNPRPSIVEFGKFL-GSIAKMKQYSTVVYLCN-QMDLFGVTHTVYSLNI 133

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+ LCR+   + A     ++ + G+ P V+T+  LING+C +G I  A +L  +M   G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  S+NT+I G      T+ A    KK
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKK 223


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 13/203 (6%)

Query: 1   FDLTEQRFKGNFHV------YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLI 47
           FD  E+R++ +         Y   I+ +CK + +D A +        G   +V  YSSLI
Sbjct: 203 FDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLI 262

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           +GLC  +R  E +EL   M  +G    ++ +N ++H  W+   +  A    + L +   +
Sbjct: 263 DGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 322

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y++ + GLC+ GR +EA + L ++ E  + P V+TY+ +I+G CK G + +AD +
Sbjct: 323 PNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 382

Query: 168 LVQMKEKGCFPDSTSFNTVIQGF 190
             +M    C P   +F T++ GF
Sbjct: 383 FTRMMVHECIPHPVTFMTLLHGF 405



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 15/205 (7%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   ING CK  ++D A +       +G+ +DV ++S+LI GLC   R+ EA+E F  M
Sbjct: 113 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 172

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL------NIEVYSLVIDGL 120
             +  +  ++TYN +++   +      A+ L   +E+ +YE       ++  YS VID L
Sbjct: 173 -GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEK-RYEASHGCEPDVISYSTVIDAL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  R ++A +   ++   G  P VVTY+ LI+GLCK     E  +LL+ MKEKG   + 
Sbjct: 231 CKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINI 290

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
             FN ++      +E ++A  F ++
Sbjct: 291 IDFNAMLHALWKNDEQEKACQFFER 315



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------------KGICLDVFVYSSLINGLCTFNRLKE 58
           N   Y   +NG+CK   ID A++             G   DV  YS++I+ LC   R+ +
Sbjct: 179 NVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 238

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A E F +M A G    +VTY+ LI D   K  R S  + LL  ++   + +NI  ++ ++
Sbjct: 239 AYEYFKRMRAVGCAPNVVTYSSLI-DGLCKVDRPSECLELLLHMKEKGFGINIIDFNAML 297

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             L +    E+A +  ++L + G  P VVTYN+ ++GLCK G + EA ++L++M E    
Sbjct: 298 HALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVT 357

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           PD  +++++I GF      D+A     + M
Sbjct: 358 PDVITYSSIIDGFCKAGRMDKADDVFTRMM 387



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 42/238 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y + ++G+CK   +D A       ++  +  DV  YSS+I+G C   R+ +A +
Sbjct: 322 KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 381

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWE-KQGRF---------------------------- 92
           +F +M+        VT+  L+H   E K+ R                             
Sbjct: 382 VFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVC 441

Query: 93  ------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                 SA+ +   ++R K + +   Y+ +I  LCR  R +EA++ LD +    +VP   
Sbjct: 442 GADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGA 501

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             + L+  LCK+G + EA  +L  + E GC P   +F  +++   ++ + + AS  L+
Sbjct: 502 ICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLR 559



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+    F      Y + ++ +C    ++SA+       +K    D   Y+ LI  LC   
Sbjct: 420 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRAR 479

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ EA E  D M A  +       + L+ +   KQG    A ++L  +     +   E +
Sbjct: 480 RVDEAKEFLDVMEADNVVPNGAICHALV-EVLCKQGEVDEACSVLDNVVEVGCQPLGETF 538

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++++ L    +WE A K    L   G V    TY++ +  +CK G   EA +++ QM  
Sbjct: 539 KILVEELYLRKKWEAASK---LLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVL 595

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  PD  ++  V++     +  + A +  +K
Sbjct: 596 KGVRPDEGTYVAVLRSLCGLDRVESAIAEFEK 627



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 16/207 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVF----------VYSSLINGLCT 52
           +  ++ + + + Y   I  +C+ R +D A +    LDV           +  +L+  LC 
Sbjct: 456 MKRKKRQPDCNTYAPLIQCLCRARRVDEAKEF---LDVMEADNVVPNGAICHALVEVLCK 512

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              + EA  + D +V  G      T+  L+ + + ++   +A  LL++     +  +   
Sbjct: 513 QGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRS---PGFVADAAT 569

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YSL +  +C+ G+ +EA + ++Q+  KG+ P   TY  ++  LC    +  A     +M 
Sbjct: 570 YSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMA 629

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +GC P   ++  +I      +  D A
Sbjct: 630 SRGCAPGLVTYTLLIGEACSADMADEA 656



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           ++ N    +++++   +  R EEA + L +  E    P  + Y  +ING CK G + +A 
Sbjct: 72  FQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAF 131

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +LL +MKE+G   D    +T+IQG   K   D A
Sbjct: 132 ELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA 165



 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           ++ G      T  +L+N   K     EA +LL +  E  CFP+   + TVI GF    + 
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQV 127

Query: 197 DRASSFL 203
           D+A   L
Sbjct: 128 DQAFELL 134


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK R +  A+        KG+  DVF YS L++GLC  ++ +EA  LF++M
Sbjct: 226 IYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM 285

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           ++  I  ++VT+N L+ D   K+G  S A  +++ +     E N   Y+ +++G C   +
Sbjct: 286 MSLNIMPDVVTFNILV-DKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNK 344

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EAR   D +  KG +P VV+YNILING CK   I EA +L  +M  +G  P++ ++NT
Sbjct: 345 VFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNT 404

Query: 186 VIQGF 190
           +I G 
Sbjct: 405 LISGL 409



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++    ++ N H Y   I G CKI +   A+       K G   D+ +Y+++I+GLC   
Sbjct: 179 EMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDR 238

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+++F ++  +G+  ++ TY+ L+H       +  A AL   +       ++  ++
Sbjct: 239 LVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFN 298

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++D LC+ G   EA+  +  + EKG+ P   TYN L+NG C +  + EA  +   M  K
Sbjct: 299 ILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITK 358

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+  S+N +I G+      D A
Sbjct: 359 GCMPNVVSYNILINGYCKAQRIDEA 383



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 43/230 (18%)

Query: 12  FHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           FH + I IN   +++ +D A       IK G   D   +SSLINGLC  ++   A+E FD
Sbjct: 120 FH-FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFD 178

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-- 122
           +MVA G    L TYN +I    +      A+ LL+ +++     +I +Y+ +IDGLC+  
Sbjct: 179 EMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDR 238

Query: 123 ---------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYN 149
                                              + EEA    +++    ++P VVT+N
Sbjct: 239 LVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFN 298

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           IL++ LCK+GM+ EA  ++  M EKG  P+  ++N+++ G+ ++N+   A
Sbjct: 299 ILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEA 348



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ++ +CK   +  A       I+KG+  +   Y+SL+NG C  N++ EA  +FD M
Sbjct: 296 TFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAM 355

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G    +V+YN LI+   + Q    A  L   +       N   Y+ +I GLC+ GR 
Sbjct: 356 ITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRH 415

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EAR+    +  +G  P +VT  IL++ LCK G +  A +L   M++    P+  +++ +
Sbjct: 416 CEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDIL 475

Query: 187 IQG 189
           I+ 
Sbjct: 476 IRA 478



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N+  Y   +NG C   K+ E     D+ I KG   +V  Y+ LING C   R
Sbjct: 320 MIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQR 379

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA ELFD+M  +G+      YN LI    +      A  L + ++      ++   ++
Sbjct: 380 IDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTI 439

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ++D LC++G  + A +    + +  L P +VTY+ILI  + K G I
Sbjct: 440 LLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 80/155 (51%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C+   +++A+  F+ M+ +     +V ++ L+      +   + ++L + +E  + E ++
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             ++++I+   R+ R + A   L ++ + G  P  VT++ LINGLC +     A +   +
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M   G  P+  ++NT+I+GF    +T  A   LKK
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKK 214


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + N  +Y   I+ +CK R  D A+        KG+  +V  YSSLI+ LC + R  +A
Sbjct: 248 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDA 307

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   LVT++ LI D + K+G+   A  L + + +   + NI  YS +I+
Sbjct: 308 SRLLSDMIERKINPNLVTFSALI-DAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C + R  EA++ L+ +  K  +P VVTYN LING CK   + +  +L  +M ++G   
Sbjct: 367 GFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVG 426

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++ T+I GF    + D A    K+
Sbjct: 427 NTVTYTTLIHGFFQARDCDNAQMVFKQ 453



 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C        +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G 
Sbjct: 155 LNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGC 214

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A+ LL  +E  K E N+ +YS VID LC+    ++A  
Sbjct: 215 QPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 274

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P V+TY+ LI+ LC  G   +A +LL  M E+   P+  +F+ +I  F+
Sbjct: 275 LFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334

Query: 192 VKNETDRA 199
            K +  +A
Sbjct: 335 KKGKLVKA 342



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   N   +   I+   K  ++  A       IK+ I  ++F YSSLING C  +
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA ++ + M+ +     +VTYN LI+   + +     M L + + +     N   Y+
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYT 432

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  +    + A+    Q+   G+ P ++TYNIL++GLCK G + +A  +   ++  
Sbjct: 433 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492

Query: 175 GCFPDSTSFNTVIQG 189
              PD  ++N +I+G
Sbjct: 493 TMEPDIYTYNIMIEG 507



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   ING C +  +  A       I+K    +V  Y++LING C   
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ + +ELF +M  +G+    VTY  LIH  ++ +   +A  + + +       NI  Y+
Sbjct: 408 RVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 467

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           +++DGLC+ G+  +A    + L    + P + TYNI+I G+CK G
Sbjct: 468 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L++ +   N+    +   +KM   GI+  L TYN LI+          A+ALL  + 
Sbjct: 81  FSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMM 140

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   + +++G C   R  +A   +DQ+ E G  P  VT+  LI+GL       
Sbjct: 141 KLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKAS 200

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M ++GC PD  ++  V+ G   + +TD A + L K
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 9/125 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK + +D  +       ++G+  +   Y++LI+G         A  +F
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV+ G+   ++TYN L+ D   K G+ + AM + + L+R   E +I  Y+++I+G+C+
Sbjct: 452 KQMVSVGVHPNILTYNILL-DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510

Query: 123 VGRWE 127
            G+W+
Sbjct: 511 AGKWK 515



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 42/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+   +  A       +K G   D+   +SL+NG C  NR+ +AV L 
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALV 171

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + VT+  LIH                                   GL   
Sbjct: 172 DQMVEMGYKPDTVTFTTLIH-----------------------------------GLFLH 196

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA   +D++ ++G  P +VTY  ++NGLCK+G    A  LL +M+      +   +
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 184 NTVIQGFLVKNETDRA 199
           +TVI         D A
Sbjct: 257 STVIDSLCKYRHEDDA 272



 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 35/147 (23%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI- 152
           A+ L   + + +   +I  +S ++  + ++ +++      +++   G+   + TYNILI 
Sbjct: 62  AIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILIN 121

Query: 153 ----------------------------------NGLCKKGMIMEADKLLVQMKEKGCFP 178
                                             NG C    I +A  L+ QM E G  P
Sbjct: 122 CFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKP 181

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ +F T+I G  + N+   A + + +
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDR 208


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 42/227 (18%)

Query: 15  YGIRINGMCKIREIDSAI------------------------------------------ 32
           Y   ING+CK +++  A+                                          
Sbjct: 36  YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMK 95

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KKG   DV +Y +LI+G C    L    ELFD+M+ +GI+A +VTY+ L+H         
Sbjct: 96  KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWK 155

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  +L  +       ++  Y+ +IDGLC+ GR   A   L+ + EKG  P  VTYN+L+
Sbjct: 156 EANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLL 215

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +GLCK+G++++A K+L  M EKG   D  ++NT+++G   K + D A
Sbjct: 216 SGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEA 262



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 15/198 (7%)

Query: 17  IRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           I + G+C+          IRE+    +K +  D+  Y++LINGLC   +LKEAV L  +M
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMG---RKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEM 59

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G     VT   L+ D   K GR   AM LL+ +++  ++ ++ +Y  +I G C  G 
Sbjct: 60  EAAGCFPNSVTCTTLM-DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGN 118

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +  ++  D++  KG+   VVTY+ L++GLC+ G   EA+ +L  M E G  PD  ++  
Sbjct: 119 LDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTG 178

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G         A   L
Sbjct: 179 LIDGLCKDGRATHAMDLL 196



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 11/213 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++ F  +  +YG  I+G C    +D         + KGI  +V  YS L++GLC   +
Sbjct: 94  MKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQ 153

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  + + M   GI  ++VTY  LI D   K GR + AM LL  +     E +   Y+
Sbjct: 154 WKEANTVLNAMAEHGIHPDVVTYTGLI-DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 212

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KE 173
           +++ GLC+ G   +A K L  + EKG    VVTYN L+ GLC KG + EA KL   M   
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 174 KGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + C  P+  +FN +I G   +    +A    +K
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 305



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 44/247 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLD--VFVYSSLINGLCTF 53
           + E+  K +   Y   + G+C   ++D A+K          CL+  VF ++ LI GLC  
Sbjct: 234 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 293

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL +AV++  KMV +G    LVTYN L+    +      AM L + +    +  N   Y
Sbjct: 294 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 353

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL----- 168
           S++IDG C++     A+    ++   GL P +  YN L+  LCK+G + +A  L      
Sbjct: 354 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 413

Query: 169 ----------------------------VQMK--EKGCFPDSTSFNTVIQGFLVKNETDR 198
                                       +QMK  E G  PD+ +F+T+I       E D 
Sbjct: 414 ANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDE 473

Query: 199 ASSFLKK 205
           A S L++
Sbjct: 474 AKSALER 480



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E     +   Y   I+G+CK      A       ++KG       Y+ L++GLC    
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 223

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL--ERDKYELNIEVY 113
           + +A ++   M+ +G  A++VTYN L+    +K     A+ L  ++    +  E N+  +
Sbjct: 224 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 283

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I GLC+ GR  +A K   ++ +KG    +VTYN+L+ G  K G I EA +L  Q+ +
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 343

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P+S +++ +I GF
Sbjct: 344 LGFVPNSFTYSILIDGF 360



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G+CK        + +   I+KG   DV  Y++L+ GLC   ++ EA++LF+ M
Sbjct: 210 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269

Query: 67  V--AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
                 +   + T+N LI     K+GR + A+ + + + +     N+  Y++++ G  + 
Sbjct: 270 FDNENCLEPNVFTFNMLI-GGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 328

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA +   Q+ + G VP   TY+ILI+G CK  M+  A  L  +M+  G  P    +
Sbjct: 329 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDY 388

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT++     +   ++A S  ++
Sbjct: 389 NTLMASLCKEGSLEQAKSLFQE 410



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVEL 62
           GN   Y + + G  K  +I  A++        G   + F YS LI+G C    L  A  L
Sbjct: 313 GNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGL 372

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +M   G+   L  YN L+    ++     A +L Q +     E +I  ++ +IDG  +
Sbjct: 373 FCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLK 432

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G ++  ++   ++ E GL P  +T++ LIN L K G + EA   L +M   G  PD+  
Sbjct: 433 AGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALV 492

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++++++G   K +T    + L +
Sbjct: 493 YDSLLKGLSSKGDTTEIINLLHQ 515



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y I I+G CK+R ++ A          G+   +F Y++L+  LC    L++A 
Sbjct: 346 FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 405

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE----VYSLV 116
            LF +M       +++++N +I D   K G F     ++ L+    E+ +      +S +
Sbjct: 406 SLFQEMGNANCEPDIISFNTMI-DGTLKAGDFQ---FVKELQMKMVEMGLRPDALTFSTL 461

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+ L ++G  +EA+  L+++   G  P  + Y+ L+ GL  KG   E   LL QM  KG 
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 177 FPDSTSFNTVI 187
             D    +T++
Sbjct: 522 VLDRKIVSTIL 532



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++V+ GLCR G   EA   + ++  K + P +V+YN LINGLCK   + EA  LL++M+ 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            GCFP+S +  T++ G       D A   L+
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLE 92



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  D   +S+LIN L     L EA    ++MVA G T + + Y+ L+     K   
Sbjct: 447 VEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDT 506

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
              + LL  +      L+ ++ S ++  LC 
Sbjct: 507 TEIINLLHQMAAKGTVLDRKIVSTILTCLCH 537


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CKI E+  A K       +G   +   Y++LI+G C   ++ EA+ELF +M
Sbjct: 227 TYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQM 286

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   ++ TY  L+    E      A+   + +  +  E N+  Y+++ID  C+VG+ 
Sbjct: 287 KEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +E  + L  + EKGLV  VV +N LI+G CK+GM+ +A  +L  MK     P+S ++N +
Sbjct: 347 DEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNEL 406

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K   DRA + L K
Sbjct: 407 ICGFCRKKSMDRAMALLNK 425



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGI------------CL----- 38
           + E +   N   Y   I+G+CK R +DSA       IK G             CL     
Sbjct: 426 MYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGK 485

Query: 39  ------------------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
                             + F+Y++LI+G C   +  +A  LF +M+ +G     +T+N 
Sbjct: 486 VEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNV 545

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D   K+G+   AM+L+  + +   +  +  Y+++I+ + R   ++ A   LDQ+   
Sbjct: 546 LL-DGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISS 604

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P VVTY   I   C++G ++EA++++V++KE+G   DS  ++ ++  +    + D A
Sbjct: 605 GCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSA 664



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK       I  +DS     +C +   Y+ LI G C    +  A+ L +KM    +
Sbjct: 372 IDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKL 431

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +  LVTYN LIH   + +   SA  L   + +D +  +   +   ID LC++G+ E+A +
Sbjct: 432 SPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQ 491

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             + L EK        Y  LI+G CK     +A  L  +M  +GCFP+S +FN ++ G  
Sbjct: 492 VFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLR 551

Query: 192 VKNETDRASSFL 203
            + + + A S +
Sbjct: 552 KEGKVEDAMSLV 563



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 9/195 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F + E     +   Y + +   C++ +   A+K        GI  +V+ Y+ LI+  C  
Sbjct: 284 FQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKV 343

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            ++ E +E+   M+ +G+ + +V +N LI D + K+G    A+ +L +++ +K   N   
Sbjct: 344 GKMDEGMEMLSTMLEKGLVSSVVPFNALI-DGYCKRGMMEDAICVLDSMKLNKVCPNSRT 402

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G CR    + A   L+++ E  L P +VTYN LI+GLCK  ++  A +L   M 
Sbjct: 403 YNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMI 462

Query: 173 EKGCFPDSTSFNTVI 187
           + G  PD  +F   I
Sbjct: 463 KDGFVPDQRTFCAFI 477



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  +++G   +V  YS LI GLC    L  A  LF+ M   GI+     +N L+    + 
Sbjct: 730 EKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKL 789

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ LL ++    +  ++E Y L++ GL   G  E+A +    L   G     V +
Sbjct: 790 GMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVW 849

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            +L++GL +KG + E  +L   M++ GC   S +   + Q
Sbjct: 850 KVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTMLSQ 889



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 26/199 (13%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN----PLIHDNWEK 88
           ++GI LD F+Y  L+N      +L  A  +  +M   G      TY+     LI + + K
Sbjct: 638 EEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNK 697

Query: 89  QG------------------RFSAMALLQTLERDKYE----LNIEVYSLVIDGLCRVGRW 126
           +G                  + +   ++  L     E     N+  YS +I GLC+V   
Sbjct: 698 EGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHL 757

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +  + + E G+ P    +N L++  CK GM  EA +LL  M E        S+  +
Sbjct: 758 SLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLL 817

Query: 187 IQGFLVKNETDRASSFLKK 205
           + G   +   ++A    + 
Sbjct: 818 VCGLFEQGNQEKAEEIFRS 836



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF+KMV QG    + TY+ LI    + +    A  L   ++      +  +++ ++   C
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++G  EEA + LD + E   +  + +Y +L+ GL ++G   +A+++   +   G   D  
Sbjct: 788 KLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEV 847

Query: 182 SFNTVIQGFLVKNETDRAS 200
            +  ++ G + K   D  S
Sbjct: 848 VWKVLLDGLVRKGYVDECS 866



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%)

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L + +  D  E N+  ++ +++  C++G    A+     L + G      TY  LI G 
Sbjct: 176 CLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGY 235

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           CK   + +A K+   M ++GC  +  S+  +I GF    + D A
Sbjct: 236 CKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEA 279



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 47/97 (48%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  L   ++ L++  Y+ +   L R G  +E       +   G+ P ++++N ++N
Sbjct: 139 ARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVN 198

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             CK G ++ A      + + G   DS ++ ++I G+
Sbjct: 199 AHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGY 235


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   +   I+G CK  +++          K G+  DVFVYS+LI+G C+   ++   E
Sbjct: 196 KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKE 255

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF++M+ + +T  +VTY+ L++   +KQ    A  +L T+   K   ++  Y+++ DGL 
Sbjct: 256 LFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLS 315

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR  +A K LD + ++G  P  VTYN +INGLCK+G + +A  +L  M +KG  PD  
Sbjct: 316 KNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVV 375

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           +++T+++G     + D A   L
Sbjct: 376 TYSTLVKGLCGVGKIDEAVDLL 397



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 11/197 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +   +G+  VY   I+G C   +I+         ++K +  +V  YS L+N LC   
Sbjct: 224 EMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           + KEA ++ D M    +  ++V Y  ++ D   K GR S A+ +L  + +   E N   Y
Sbjct: 284 KWKEAAQMLDTMTGCKVRPDVVAYT-VLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTY 342

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL--LVQM 171
           + +I+GLC+ GR ++A   L+ +++KG  P VVTY+ L+ GLC  G I EA  L  L+  
Sbjct: 343 NAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMS 402

Query: 172 KEKGCFPDSTSFNTVIQ 188
           KE    PD  +FN VIQ
Sbjct: 403 KEFHIKPDVFAFNLVIQ 419



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRING------MCKIREI-DSAIKKGICLDVFVYSSLINGLCTF 53
           + + E+ F  N   Y I I+G      + K  E+   A+  GI  +   Y+ LINGLC  
Sbjct: 435 YTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKM 494

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L  A  LF+K  A G    +  YN L+     +     A  L Q +    ++ ++  +
Sbjct: 495 QMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSF 554

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG  + G  E A++ L ++    LVP  +T++ILIN   K G + EA  L  +M  
Sbjct: 555 NIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVS 614

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  PD+  F+++++G+ +K +T++  S L++
Sbjct: 615 CGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQ 646



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A+       KKG   DV  YS+L+ GLC   ++ EAV+L + +
Sbjct: 341 TYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLL 400

Query: 67  VAQ--GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +++   I  ++  +N +I +  +++    A  +  T+    +  NI  Y+++IDG    G
Sbjct: 401 MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAG 460

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  +A +      + G+ P   TY +LINGLCK  M+  A  L  + +  G  P  + +N
Sbjct: 461 KLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYN 520

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T++     ++  ++A +  ++
Sbjct: 521 TLMASLCRESSVEQARNLFQE 541



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 7/197 (3%)

Query: 15  YGIRINGMCK------IREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK       +E+   +K G C  +   +S+LI+G C    ++E   L ++M 
Sbjct: 167 YNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEME 226

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  ++  Y+ LI     K        L   + R     N+  YS +++ LC+  +W+
Sbjct: 227 KMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWK 286

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + LD ++   + P VV Y +L +GL K G   +A K+L  M ++G  P++ ++N +I
Sbjct: 287 EAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAII 346

Query: 188 QGFLVKNETDRASSFLK 204
            G   +   D A   L+
Sbjct: 347 NGLCKEGRVDDALGILE 363



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 12/210 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-----KGICL--DVFVYSSLINGLCTFNR 55
           + ++ F  N + + + + G C+  +   A+      K  CL  D   Y+++INGLC   R
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKR 179

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L EA ELF +M         VT++ LI D + K G       LL+ +E+   E ++ VYS
Sbjct: 180 LVEAKELFKEMKGGECKPNSVTFSALI-DGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYS 238

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C  G  E  ++  +++  K + P VVTY+ L+N LCKK    EA ++L  M   
Sbjct: 239 ALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGC 298

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              PD  ++ TV+   L KN   RAS  +K
Sbjct: 299 KVRPDVVAY-TVLADGLSKN--GRASDAIK 325



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++LI+ L         + +  KM +  +     + + LI      Q    A  +L  + +
Sbjct: 63  NTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMK 122

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             + LN+  ++L++ G C+ G   +A      +    L+P  V+YN +INGLCK   ++E
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVE 182

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A +L  +MK   C P+S +F+ +I GF
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGF 209



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S+LI       +   A  +   ++ +G    +  +N L+    +      AM L   ++R
Sbjct: 98  SALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR 157

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +    +   Y+ VI+GLC+  R  EA++   ++      P  VT++ LI+G CK G + E
Sbjct: 158 NCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEE 217

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKNM 207
              LL +M++ G   D   ++ +I GF  K + +R     +  L+KN+
Sbjct: 218 GFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNV 265



 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I I+G  K  +++SA       +   +  D   +S LIN      +L EA  L+++MV
Sbjct: 554 FNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMV 613

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G   + V ++ L+     K      +++LQ +      L+ ++ S ++  LC + +  
Sbjct: 614 SCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDV 673

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  K L + S+   V   +  N L+  L K
Sbjct: 674 DIEKILPKFSQHTSVGASIKCNELLMKLNK 703


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G CK + ++  +       ++G+  +   Y++LI GL        A ++F
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KMV+ G+  +++TY+ L+ D   K G+   A+ + + L++ K E +I  Y+++I+G+C+
Sbjct: 454 KKMVSDGVPPDIITYSILL-DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+       LS KG+ P V+ Y  +I+G C+KG+  EAD L  +MKE G  P+S +
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 573 YNTLIRARL--RDGDKAAS 589



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  Y++LI G C   
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++E +ELF +M  +G+    VTYN LI   ++      A  + + +  D    +I  YS
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGLC+ G+ E+A    + L +  + P + TYNI+I G+CK G + +   L   +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+   + T+I GF  K   + A +  ++
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFRE 560



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 42/239 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  +NG+CK  +ID A+       K  I  DV +Y+++I+ LC +  + +A+ 
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276

Query: 62  LFDKMVAQGITAELVTYNPLI-----HDNWEKQGR----------------FSAM----- 95
           LF +M  +GI   +VTYN LI     +  W    R                FSA+     
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 336

Query: 96  ---------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                     L   + +   + +I  YS +I+G C   R +EA+   + +  K   P VV
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 396

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN LI G CK   + E  +L  +M ++G   ++ ++NT+IQG     + D A    KK
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 11/182 (6%)

Query: 19  INGMCKIREIDSAIKKGICLDVFV---------YSSLINGLCTFNRLKEAVELFDKMVAQ 69
           +NG C  + I  A+   +   +FV         +++LI+GL   N+  EAV L D+MVA+
Sbjct: 157 LNGYCHGKRISEAV--ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR 214

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   +L TY  +++   ++     A++LL+ +E+ K E ++ +Y+ +ID LC      +A
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++  KG+ P VVTYN LI  LC  G   +A +LL  M E+   P+  +F+ +I  
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334

Query: 190 FL 191
           F+
Sbjct: 335 FV 336



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 92/172 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID  + +G   D+F Y +++NGLC    +  A+ L  KM    I A++V Y  +I     
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 267

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L   ++      N+  Y+ +I  LC  GRW +A + L  + E+ + P VVT
Sbjct: 268 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++ LI+   K+G ++EA+KL  +M ++   PD  +++++I GF + +  D A
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 7/189 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   + + Y I IN  C+  ++  A+       K G   D+   SSL+NG C   R+ EA
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           V L D+M         VT+N LIH  +       A+AL+  +     + ++  Y  V++G
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 229

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G  + A   L ++ +  +   VV Y  +I+ LC    + +A  L  +M  KG  P+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 180 STSFNTVIQ 188
             ++N++I+
Sbjct: 290 VVTYNSLIR 298



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I G+ +  + D A       +  G+  D+  YS L++GLC + 
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +  ++ TYN +I    +         L  +L     + N+ +Y+
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 539

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 540 TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC 599

Query: 175 GCFPDSTSFNTVIQ 188
           G   D+++ + VI 
Sbjct: 600 GFVGDASTISMVIN 613



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +   N+    + L ++M    I+ +L +YN LI+    +     A+A+L  + 
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   S +++G C   R  EA   +DQ+      P  VT+N LI+GL       
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  +GC PD  ++ TV+ G   + + D A S LKK
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G CK + ++  +       ++G+  +   Y++LI GL        A ++F
Sbjct: 378 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 437

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KMV+ G+  +++TY+ L+ D   K G+   A+ + + L++ K E +I  Y+++I+G+C+
Sbjct: 438 KKMVSDGVPPDIITYSILL-DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 496

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+       LS KG+ P V+ Y  +I+G C+KG+  EAD L  +MKE G  P+S +
Sbjct: 497 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 556

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 557 YNTLIRARL--RDGDKAAS 573



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  Y++LI G C   
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++E +ELF +M  +G+    VTYN LI   ++      A  + + +  D    +I  YS
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 453

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DGLC+ G+ E+A    + L +  + P + TYNI+I G+CK G + +   L   +  K
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+   + T+I GF  K   + A +  ++
Sbjct: 514 GVKPNVIIYTTMISGFCRKGLKEEADALFRE 544



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 42/239 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  +NG+CK  +ID A+       K  I  DV +Y+++I+ LC +  + +A+ 
Sbjct: 201 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 260

Query: 62  LFDKMVAQGITAELVTYNPLI-----HDNWEKQGR----------------FSAM----- 95
           LF +M  +GI   +VTYN LI     +  W    R                FSA+     
Sbjct: 261 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 320

Query: 96  ---------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                     L   + +   + +I  YS +I+G C   R +EA+   + +  K   P VV
Sbjct: 321 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 380

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN LI G CK   + E  +L  +M ++G   ++ ++NT+IQG     + D A    KK
Sbjct: 381 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 439



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 11/182 (6%)

Query: 19  INGMCKIREIDSAIKKGICLDVFV---------YSSLINGLCTFNRLKEAVELFDKMVAQ 69
           +NG C  + I  A+   +   +FV         +++LI+GL   N+  EAV L D+MVA+
Sbjct: 141 LNGYCHGKRISEAV--ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR 198

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   +L TY  +++   ++     A++LL+ +E+ K E ++ +Y+ +ID LC      +A
Sbjct: 199 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 258

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++  KG+ P VVTYN LI  LC  G   +A +LL  M E+   P+  +F+ +I  
Sbjct: 259 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 318

Query: 190 FL 191
           F+
Sbjct: 319 FV 320



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 92/172 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID  + +G   D+F Y +++NGLC    +  A+ L  KM    I A++V Y  +I     
Sbjct: 192 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 251

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L   ++      N+  Y+ +I  LC  GRW +A + L  + E+ + P VVT
Sbjct: 252 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 311

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++ LI+   K+G ++EA+KL  +M ++   PD  +++++I GF + +  D A
Sbjct: 312 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 363



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 7/189 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   + + Y I IN  C+  ++  A+       K G   D+   SSL+NG C   R+ EA
Sbjct: 94  RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 153

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           V L D+M         VT+N LIH  +       A+AL+  +     + ++  Y  V++G
Sbjct: 154 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 213

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G  + A   L ++ +  +   VV Y  +I+ LC    + +A  L  +M  KG  P+
Sbjct: 214 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 180 STSFNTVIQ 188
             ++N++I+
Sbjct: 274 VVTYNSLIR 282



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I G+ +  + D A       +  G+  D+  YS L++GLC + 
Sbjct: 404 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 463

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+ +F+ +    +  ++ TYN +I    +         L  +L     + N+ +Y+
Sbjct: 464 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 523

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G  EEA     ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 524 TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC 583

Query: 175 GCFPDSTSFNTVIQ 188
           G   D+++ + VI 
Sbjct: 584 GFVGDASTISMVIN 597



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +   N+    + L ++M    I+ +L +YN LI+    +     A+A+L  + 
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 126

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   S +++G C   R  EA   +DQ+      P  VT+N LI+GL       
Sbjct: 127 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 186

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  +GC PD  ++ TV+ G   + + D A S LKK
Sbjct: 187 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 229


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ING+CKI+ +D A+        + I  +V  Y+SLI+GL    ++   ++L
Sbjct: 348 ANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKL 407

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            D+M  +G    ++TYN ++    +      A+ALL  L+      ++  Y+++I GLC+
Sbjct: 408 VDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQ 467

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+A+K  + L  KG    V TY ++I G C KG+   A  LL +M++ GC P++ +
Sbjct: 468 SGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKT 527

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  VI     K+E D A   L++
Sbjct: 528 YEIVILSLFEKDENDMAEKLLRE 550



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 104/186 (55%), Gaps = 11/186 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+ MCK + ++ A       + K I  D F  +SLI G C   +LKEAV L  KM
Sbjct: 212 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKM 271

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           + + I   + T++ L+ D + K+G+   + M L  T+++D   L++  Y+ ++DG C V 
Sbjct: 272 ILENINPRMYTFSILV-DAFCKEGKVKEAKMMLGVTMKKDII-LDVVTYNSLMDGYCLVK 329

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              +A+   D ++ +G++  V +Y  +INGLCK  M+ EA  L  +M+ +   P+  ++N
Sbjct: 330 EINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYN 389

Query: 185 TVIQGF 190
           ++I G 
Sbjct: 390 SLIDGL 395



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  ING+CK+  I +A++       K +  +  +Y+ +I+ +C    + +A 
Sbjct: 171 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 230

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L+ +MVA+ I+ +  T N LI+          A+ LL  +  +     +  +S+++D  
Sbjct: 231 DLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAF 290

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ +EA+  L    +K ++  VVTYN L++G C    I +A  +   M  +G   + 
Sbjct: 291 CKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANV 350

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            S+ T+I G       D A +  ++
Sbjct: 351 QSYTTMINGLCKIKMVDEAVNLFEE 375



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D F ++ LIN          +  +F K++ +G     +T+N LI     K     A
Sbjct: 100 GIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQA 159

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     +    + L+   Y  +I+GLC+VGR   A + L ++  K + P  V YN++I+ 
Sbjct: 160 LNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDN 219

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +CK  ++ +A  L  QM  K   PD  + N++I GF +  +   A   L K
Sbjct: 220 MCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHK 270



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 2/177 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG   +   +++LI GLC    + +A+   DK+VAQG   + V+Y  LI +   K GR
Sbjct: 132 LKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLI-NGLCKVGR 190

Query: 92  FSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            +A + LL+ ++    + N  +Y+++ID +C+     +A     Q+  K + P   T N 
Sbjct: 191 ITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNS 250

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LI G C  G + EA  LL +M  +   P   +F+ ++  F  + +   A   L   M
Sbjct: 251 LIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTM 307



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 21/206 (10%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   +   I G+C    I       D  + +G  LD   Y +LINGLC   R+  A+
Sbjct: 136 FDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAAL 195

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQ-------GRFSAMALLQTLERDKYELNIEVY 113
           +L  ++  + +    V YN +I DN  K          +S M + + +  D +  N  +Y
Sbjct: 196 QLLKRVDGKLVQPNAVMYNMII-DNMCKAKLVNDAFDLYSQM-VAKRISPDDFTCNSLIY 253

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                G C +G+ +EA   L ++  + + P + T++IL++  CK+G + EA  +L    +
Sbjct: 254 -----GFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMK 308

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           K    D  ++N+++ G+ +  E ++A
Sbjct: 309 KDIILDVVTYNSLMDGYCLVKEINKA 334



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%)

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           T  ++ +N ++    + +   +A++L Q +E +    +   ++++I+   ++G    +  
Sbjct: 67  TPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFS 126

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++ +KG  P  +T+N LI GLC KG I +A     ++  +G   D  S+ T+I G  
Sbjct: 127 VFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLC 186

Query: 192 VKNETDRASSFLKK 205
                  A   LK+
Sbjct: 187 KVGRITAALQLLKR 200


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  Q  + N   Y   ING+C   ++D A+         G+  +V  Y++LING C   
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVY 113
            LKEA E+ D +  +G+   ++T+N LI D + K GR     LL+++  D     N+  Y
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLI-DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR G  +EARK   ++   GL   +VTYNIL++ LCKKG   +A +LL +M E
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFE 502

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  P   ++N +I G+  +  +  A
Sbjct: 503 VGLNPSHLTYNALIDGYFREGNSTAA 528



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 115/213 (53%), Gaps = 9/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSLINGLCTFN 54
           ++  +R   N   + + ING+CK+ +   A      +K  G    V  Y+++I+G C   
Sbjct: 219 EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A  L  +MVA+ I    +T+N LI      +   +A  + + ++R   + N+  Y+
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYN 338

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  G+ +EA    D++S  GL P VVTYN LING CKK M+ EA ++L  + ++
Sbjct: 339 SLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  P+  +FNT+I  +      D A  FL ++M
Sbjct: 399 GLAPNVITFNTLIDAYGKAGRMDDA--FLLRSM 429



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C+   +  A K        G+  D+  Y+ L++ LC     ++AV L 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLVIDGLCR 122
           D+M   G+    +TYN LI D + ++G  +A   ++TL E+     NI  Y+++I G C 
Sbjct: 498 DEMFEVGLNPSHLTYNALI-DGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCN 556

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            G+ EEA + L+++ EKGL+P   TY+IL + + +KG I + D  L
Sbjct: 557 KGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHL 602



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N  + SLV +G  R+G  E   K   ++  + +   VVT++++INGLCK G   +A  ++
Sbjct: 198 NPMLVSLVKEG--RIGVVESVYK---EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             MK  G  P   ++NT+I G+    +  +A + LK+
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKE 289


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 110/198 (55%), Gaps = 12/198 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK + ++  +       ++G+  +   Y+++I G         A  +F
Sbjct: 397 NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVF 456

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MV+  +  +++TY+ L+H         +A+ + + L++ + ELNI +Y+ +I+G+C+ 
Sbjct: 457 KQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKA 516

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EA      LS K   P VVTYN +I+GLC K ++ EAD L  +MKE G  P+S ++
Sbjct: 517 GKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573

Query: 184 NTVIQGFLVKNETDRASS 201
           NT+I+  L   + DRA+S
Sbjct: 574 NTLIRANL--RDCDRAAS 589



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R K N  ++   I+ +CK R ++ A+        KGI  +V  Y+SLIN LC + R  +A
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDA 312

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             L   M+ + I   +VT+N LI D + K+G+   A  L + + +   + +   Y+L+I+
Sbjct: 313 SRLLSNMLEKKINPNVVTFNALI-DAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R +EA++    +  K  +P + TYN LING CK   + +  +L  +M ++G   
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG 431

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++ T+IQGF    + D A    K+
Sbjct: 432 NTVTYTTIIQGFFQAGDCDSAQMVFKQ 458



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C  + I       D  ++ G   D F +++LI+GL   N+  EAV L D+MV +G 
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +++   ++     A+ LL  +E  + + N+ +++ +ID LC+    E A  
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVD 279

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  KG+ P VVTYN LIN LC  G   +A +LL  M EK   P+  +FN +I  F 
Sbjct: 280 LFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFF 339



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 10/199 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING C    +D A       + K    ++  Y++LING C   R+++ VELF +M
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTY  +I   ++     SA  + + +  ++   +I  YS+++ GLC  G+ 
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKL 484

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A      L +  +   +  YN +I G+CK G + EA  L   +  K   PD  ++NT+
Sbjct: 485 DTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTM 541

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   K     A    +K
Sbjct: 542 ISGLCSKRLLQEADDLFRK 560



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +   N+ +  + L ++M   GI+ +L TY+  I+    +     A+A+L  + 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  YE +I   S +++G C   R  +A   +DQ+ E G  P   T+  LI+GL       
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ QM ++GC PD  ++ TV+ G   + + D A + L K
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNK 248



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ YS  IN  C  ++L  A+ +  KM+  G   ++VT + L++     +    A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL+  +    Y+ +   ++ +I GL    +  EA   +DQ+ ++G  P +VTY  ++NG
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK+G I  A  LL +M+      +   FNT+I   
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSL 268



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKE 58
           L +   + N  +Y   I GMCK  ++  A        I  DV  Y+++I+GLC+   L+E
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQE 553

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +LF KM   G      TYN LI  N     R ++  L++ +    +  +    SLV +
Sbjct: 554 ADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTN 613

Query: 119 GLCRVGRWEEA 129
            L   GR +++
Sbjct: 614 ML-HDGRLDKS 623



 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 35/145 (24%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L N L    ++ +AV+LF  MV       +V +N L+          SA+A     + +K
Sbjct: 54  LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLL----------SAVA-----KMNK 98

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +EL I +                     +Q+   G+   + TY+I IN  C++  +  A 
Sbjct: 99  FELVISLG--------------------EQMQTLGISHDLYTYSIFINCFCRRSQLSLAL 138

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
            +L +M + G  PD  + ++++ G+
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGY 163


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 9/203 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY I I G+CK  ++D A +       KG   D F Y +LI+G      + EA  L D+M
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+   +VTYN LI+   + +    A  L   L +     N+  Y+ +IDG C++G  
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A K  D++ E+G+ P VVTY+ LINGLCK G I  + KLL QM + G       + T+
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895

Query: 187 IQ-GFLVKNETDRA-SSFLKKNM 207
           +Q GF   N  + +    LK+NM
Sbjct: 896 VQGGFKTSNYNEMSKPEALKQNM 918



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 44/229 (19%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG+ I+G C+  +ID A++        G+  ++F+ +SLING C    + EA  +  +M
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 393

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V   +  +  +YN L+ D + ++G  S A  L   + ++  E  +  Y+ ++ GLCRVG 
Sbjct: 394 VDWNLKPDSYSYNTLL-DGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 126 WEEARKKLDQLSEKGLVP-----------------------------------GVVTYNI 150
           +++A +    + + G+ P                                     +T+N 
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +I+GLCK G ++EA+++  +MK+ GC PD  ++ T+I G+   +   +A
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQA 561



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G+ K+   + A       + +G       ++++I+GLC   ++ EA E+FDKM 
Sbjct: 475 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK 534

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + + +TY  LI    +      A  +   +ER+    +IE+Y+ +I GL +  R  
Sbjct: 535 DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLV 594

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E    L ++  +GL P +VTY  LI+G CK+GM+ +A     +M E G   +    +T++
Sbjct: 595 EXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 188 QGFLVKNETDRASSFLKK 205
            G       D A+  ++K
Sbjct: 655 SGLYRLGRIDEANLLMQK 672



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 41/226 (18%)

Query: 14  VYGIRINGMCKIREIDSAIK-KG------ICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +  A K KG      I   + +Y+SLI+GL    RL E  +L  +M
Sbjct: 544 TYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEM 603

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+T  +VTY  LI D W K+G    A +    +  +    NI + S ++ GL R+GR
Sbjct: 604 GIRGLTPNIVTYGALI-DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 662

Query: 126 WEEARKKLDQLSEKG--------------------------------LVPGVVTYNILIN 153
            +EA   + ++ + G                                L+P  + YNI I 
Sbjct: 663 IDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 722

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLCK G + +A +    +  KG  PD+ ++ T+I G+      D A
Sbjct: 723 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 768



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 36/210 (17%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I+ GI  DVF+ S ++N  C   ++ EA     KM   G+   +VTY+ LI+        
Sbjct: 218 IRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDV 277

Query: 92  FSAMALLQTLERDKYELNIEVYSL------------------------------------ 115
            +A  +L+ +       N+  Y+L                                    
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG CR G+ ++A + LD++   GL   +   N LING CK+G I EA+ ++ +M +  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PDS S+NT++ G+  +  T  A +   K
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +   K + + Y   ++G C+           D  +++GI   V  Y++L+ GLC    
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A++++  M+  G+  + V Y+ L+   ++ +    A  L + +    +  +   ++ 
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC++G+  EA +  D++ + G  P  +TY  LI+G CK   + +A K+   M+ + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREX 572

Query: 176 CFPDSTSFNTVIQGFL 191
             P    +N++I G  
Sbjct: 573 ISPSIEMYNSLISGLF 588



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI------REIDSAIKK-GICLDVFVYSSLINGLCTFN 54
           D+  + F  +   +   I+G+CK+       EI   +K  G   D   Y +LI+G C  +
Sbjct: 497 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKAS 556

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A ++   M  + I+  +  YN LI   ++ +       LL  +       NI  Y 
Sbjct: 557 NVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYG 616

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G  ++A     +++E GL   ++  + +++GL + G I EA+ L+ +M + 
Sbjct: 617 ALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDH 676

Query: 175 GCFPDSTSF 183
           G FPD   F
Sbjct: 677 GFFPDHECF 685



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLE 102
           +SL+N L        A  ++ +M+  GI  ++   + ++ + + K G+   A   ++ +E
Sbjct: 195 NSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMV-NAFCKDGKVDEAAGFVKKME 253

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               E NI  Y  +I+G   +G  E A+  L  +SEKG+   VVTY +LI G CK+  + 
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMD 313

Query: 163 EADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFL 203
           EA+K+L  M+E+    PD  ++  +I G+    + D A   L
Sbjct: 314 EAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLL 355



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 42/174 (24%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+CK   +D A +       KG+  +V  Y++LI+G C    +  A +L 
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 842

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM+ +GI+  +VTY+ L                                   I+GLC+ 
Sbjct: 843 DKMIEEGISPSVVTYSAL-----------------------------------INGLCKH 867

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           G  E + K L+Q+ + G+   ++ Y  L+ G  K     E  K     +   CF
Sbjct: 868 GDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEMSKPEALKQNMNCF 921



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 75/148 (50%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           K A+ +FD M   G    L + N L+++  +     +A  + Q + R     ++ + S++
Sbjct: 173 KNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 232

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  C+ G+ +EA   + ++   G+ P +VTY+ LING    G +  A  +L  M EKG 
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
             +  ++  +I+G+  + + D A   L+
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAEKVLR 320



 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           ++  +  V+ +++      G  + A    D + + G +P + + N L+N L K G    A
Sbjct: 151 EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTA 210

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  QM   G  PD    + ++  F    + D A+ F+KK
Sbjct: 211 HYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E     N   + I I+G  K   +  ++K       + +  +V  Y+SLINGLC   
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA+ + DKMV+ G+   L+TYN LI+   +      A+ +  +++         +Y+
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID  C++G+ ++     +++  +G+VP V TYN LI GLC+ G I  A KL  Q+  K
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK 465

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +F+ +++G+  K E+ +A+  LK+
Sbjct: 466 G-LPDLVTFHILMEGYCRKGESRKAAMLLKE 495



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 115/245 (46%), Gaps = 44/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q  K N   Y   ING+C   KI E     D  +  G+  ++  Y++LING C  +
Sbjct: 321 EMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKND 380

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            LKEA+++F  +  QG       YN LI D + K G+     AL + +ER+    ++  Y
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLI-DAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLV------------------------------- 142
           + +I GLCR G  E A+K  DQL+ KGL                                
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499

Query: 143 ---PGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDR 198
              P  +TYNI++ G CK+G +  A  +  QM KE+    +  S+N ++QG+  K + + 
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 199 ASSFL 203
           A+  L
Sbjct: 560 ANMLL 564



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 20/217 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  ++ + N   + + IN +CK  +++ A          G   +V  Y++LI+G C   
Sbjct: 213 EMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG 272

Query: 55  ---RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              ++ +A  +  +MV   ++  L T+N LI   W+      +M + + +     + N+ 
Sbjct: 273 GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVI 332

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC  G+  EA    D++   G+ P ++TYN LING CK  M+ EA  +   +
Sbjct: 333 SYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392

Query: 172 KEKGCFPDSTSFNTVI----------QGFLVKNETDR 198
           K +G  P +  +N +I           GF +K E +R
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 14/191 (7%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+  CK+ +ID          ++GI  DV  Y+ LI GLC    ++ A +LFD++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+  +LVT++ L+     K     A  LL+ + +   +     Y++V+ G C+ G  
Sbjct: 463 TSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521

Query: 127 EEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           + A     Q+  E+ L   V +YN+L+ G  +KG + +A+ LL +M EKG  P+  ++  
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581

Query: 186 VI-----QGFL 191
           V      QGF+
Sbjct: 582 VKEEMVDQGFV 592


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 115/211 (54%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E     N   + I I+G  K   +  ++K       + +  +V  Y+SLINGLC   
Sbjct: 286 EMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGG 345

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA+ + DKMV+ G+   L+TY+ LI+   +      A+ +  +++         +Y+
Sbjct: 346 KINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYN 405

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID  C++G+ ++     +++  +G+VP V TYN LI GLC+ G I  A KL  Q+  K
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNK 465

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +F+ +++G+  + E+ +A+  LK+
Sbjct: 466 G-LPDLVTFHILMEGYCSRGESRKAAMLLKE 495



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 113/245 (46%), Gaps = 44/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q    N   Y   ING+C   KI E     D  +  G+  ++  Y SLING C   
Sbjct: 321 EMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNG 380

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +KEA+++FD +  QG       YN LI D + K G+     AL + +ER+    ++  Y
Sbjct: 381 MMKEALDMFDSVKGQGTRPTTRMYNMLI-DAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLV------------------------------- 142
           + +I GLCR G  E A+K  DQL+ KGL                                
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKM 499

Query: 143 ---PGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDR 198
              P  +TYNI++ G CK+G +  A  +  QM KE+    +  S+N ++QG+  K + + 
Sbjct: 500 GLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 199 ASSFL 203
           A+  L
Sbjct: 560 ANMLL 564



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 20/217 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  ++ + N   + + IN +CK  +++ A          G   +V  Y++LI+G C   
Sbjct: 213 EMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLG 272

Query: 55  ---RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              ++ +A  +  +MV   ++  L T+N LI   W+      ++ + + +       N+ 
Sbjct: 273 GNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVI 332

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC  G+  EA    D++   G+ P ++TY+ LING CK GM+ EA  +   +
Sbjct: 333 TYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSV 392

Query: 172 KEKGCFPDSTSFNTVI----------QGFLVKNETDR 198
           K +G  P +  +N +I           GF +K E +R
Sbjct: 393 KGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+  CK+ +ID          ++GI  DV  Y+ LI GLC    ++ A +LFD++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +LVT++ L+     +     A  LL+ + +   +     Y++++ G C+ G  
Sbjct: 463 TNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNL 521

Query: 127 EEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           + A     Q+  E+ L   V +YN+L+ G  +KG + +A+ LL +M EKG  P+  ++  
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581

Query: 186 V 186
           V
Sbjct: 582 V 582



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           +C++  +   L+      +R +   E F +    G     ++  PL+    ++       
Sbjct: 149 VCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVE 208

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L + + R K + N+  +++VI+ LC+ G+  +AR  ++ +   G  P VV+YN LI+G 
Sbjct: 209 YLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGY 268

Query: 156 CK---KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           CK    G + +AD +L +M E    P+ T+FN +I GF
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGF 306



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+C+   I++A K       KG+  D+  +  L+ G C+    ++A  L  +M
Sbjct: 438 TYNCLIAGLCRNGNIEAAKKLFDQLTNKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEM 496

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDK-YELNIEVYSLVIDGLCRVG 124
              G+    +TYN ++   + K+G   A   ++T +E+++   +N+  Y++++ G  + G
Sbjct: 497 SKMGLKPRHLTYN-IMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + E+A   L+++ EKGLVP  +TY I+   +  KG + + +  L  +  K
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGHLFNVSTK 605



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  L       L+  L   NR  +   L+ +M+ + I   + T+N +I+   +      A
Sbjct: 183 GYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRV---GRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             +++ ++   Y  N+  Y+ +IDG C++   G+  +A   L ++ E  + P + T+NIL
Sbjct: 243 RDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNIL 302

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+G  K   +  + K+  +M ++   P+  ++N++I G 
Sbjct: 303 IDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGL 341


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 48/231 (20%)

Query: 17  IRINGMC---KIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +N +C   ++RE  +A    +++G   ++  Y++LI GLC  +R+ EA  LF +M   
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYELNIE----VYSLVIDGLCRV 123
           G T ++VTY  LI           A+ L Q +  D  +YE+N +     Y++++DGLC+V
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 124 GR-----------------------------------WEEARKKLDQLSEKGLVPGVVTY 148
           GR                                   WEE+++ LD++ ++GL P +VT+
Sbjct: 229 GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N+LI+ LCK+G ++EA KLL  M E G  PD  ++N++I+GF +  + + A
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 339



 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING  K  +++ A+K        G   +V  Y SL+ G+    ++ +A +LF  M 
Sbjct: 358 YNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMK 417

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A GI     TY   +    +    F AM L   L+   ++L IE  + +IDGLC+ G+ E
Sbjct: 418 AHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLE 477

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  ++LS +G  P VVTY I+I+G C++G + +A+ L+ +M+  GC PD  ++NT++
Sbjct: 478 TAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLM 537

Query: 188 QGFLVKNETDRASSFLKK 205
           +GF   N+ +     L +
Sbjct: 538 RGFYESNKLEEVVQLLHR 555



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 9/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I ++G+CK+   D A +       +G+   +  Y+SLI+G C   + +E+  
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKR 271

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGL 120
           L D+M+ QG+  ++VT+N LI D   K+G+   A  LL  +       ++  Y+ +I+G 
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLI-DTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG    AR+    +  KG  P V++YN+LING  K   + EA KL  +M   G  P+ 
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNV 390

Query: 181 TSFNTVIQGFLVKNETDRA 199
            +++++++G  +  + D A
Sbjct: 391 ITYDSLLKGIFLAGKVDDA 409



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI  + + Y   ++GLC  + L EA++LF ++ +     E+   N LI D   K G+  +
Sbjct: 420 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI-DGLCKAGKLET 478

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L + L  + +E N+  Y+++I G CR G+ ++A   + ++   G  P ++TYN L+ 
Sbjct: 479 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 538

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           G  +   + E  +LL +M +K   PD+ + + V+   L K+E
Sbjct: 539 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD-MLSKDE 579



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 10/138 (7%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-----LQTLERDKYELNIEV 112
            A+  F  M+    T  L ++N L+    + +      +L     L  L  D+  LNI  
Sbjct: 52  HALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNI-- 109

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
              +++ LC V R  E       +  +G  P +VTYN LI GLC +  I EA +L ++M+
Sbjct: 110 ---LLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 173 EKGCFPDSTSFNTVIQGF 190
           + GC PD  ++ T+I+G 
Sbjct: 167 KLGCTPDVVTYGTLIKGL 184



 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/107 (20%), Positives = 49/107 (45%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     + R     ++  ++ ++ GL ++  + +     +Q+   GL     T NIL+N
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            LC    + E       +  +G  P+  ++NT+I+G  +++    A+
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEAT 159



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCTFNR 55
           L+ +  + N   Y I I+G C+  ++D A   I+K    G   D+  Y++L+ G    N+
Sbjct: 486 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 545

Query: 56  LKEAVELFDKMVAQGITAELVT 77
           L+E V+L  +M  + ++ + +T
Sbjct: 546 LEEVVQLLHRMAQKDVSPDAIT 567


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 103/172 (59%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV+++S+++N  CT  R+ +A+ELF KM   G+   +VTYN +IH    K GR   
Sbjct: 192 GVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIH-GLCKNGRLDE 250

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A    + +E+++ + ++  Y ++I+GL ++ R++EA   L ++S++G  P  V YN LI+
Sbjct: 251 AFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G C+ G I  A ++   M   G  P+S + N++IQG+   N+ + A   L++
Sbjct: 311 GYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEE 362



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 5   EQRFKGNF---HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E +  GNF   + YGI I+G CK   ++         +   I  +  VY +LI   C   
Sbjct: 537 ECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENG 596

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++EA  L D M ++GI     TY+ LIH         SA  LL  + ++    N+  Y+
Sbjct: 597 NMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYT 656

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C++G+  +    L ++S   + P  +TY I+ING CK G +  A KLL +M +K
Sbjct: 657 ALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQK 716

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ ++N +  GF  + + + A
Sbjct: 717 GIVPDAVTYNALTNGFCKEGKMEEA 741



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IREI----DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++   + + N  VYG  I   C+   +RE     D    +GI      YSSLI+GL    
Sbjct: 572 EMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIG 631

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
            +  A +L D+M  +G++  +V Y  LI   + K G+   + ++LQ +  +    N   Y
Sbjct: 632 LVDSANQLLDEMRKEGLSPNVVCYTALI-GGYCKLGQMHKVDSILQEMSINNVHPNKITY 690

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+G C++G  + A K L+++++KG+VP  VTYN L NG CK+G + EA K+   M  
Sbjct: 691 TIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMST 750

Query: 174 KGCFPDSTSFNTVIQGF 190
            G   D  ++ T+I G+
Sbjct: 751 GGISLDDITYTTLIDGW 767



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 17/214 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++ +  N  VY   I+G C+I  I +A       I  GI  +    +SLI G C  N
Sbjct: 292 EMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSN 351

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  L ++M+  G      T+  +IH    K    SA+  +  +    ++ N  + +
Sbjct: 352 QMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLT 411

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++ GLC+ G+  EA +   +L EKG     VT N LI+GLC+ G   EA KLL +M E+
Sbjct: 412 LLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER 471

Query: 175 GCFPDSTSFNTVI----------QGFLVKNETDR 198
           G   DS S+NT+I          +GF +K E  R
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVR 505



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +++   +N  C    +D AI       K G+  +V  Y+++I+GLC   RL EA +  
Sbjct: 196 DVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFK 255

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +KM  + +   LVTY  LI +   K  RF  A  +L+ +    Y  N  VY+ +IDG CR
Sbjct: 256 EKMEKERVKPSLVTYGVLI-NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCR 314

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G    A +  D +   G+ P  VT N LI G CK   +  A+ LL +M   G   +  +
Sbjct: 315 IGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGT 374

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           F +VI    +K   D A  F+
Sbjct: 375 FTSVIHRLCLKCRFDSALLFI 395



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 86/160 (53%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L++GLC   +  EA+EL+ +++ +G  A  VT N LIH   E   +  A  LL+ +    
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
             L+   Y+ +I   C+ G+ EE  K  +++  +G+ P + TYN+L++GLC  G I EA 
Sbjct: 473 LVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAG 532

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L  + K+ G FPD+ ++  +I G+   N  +      ++
Sbjct: 533 GLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQE 572



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  + + + Y + ++G+C + +I+ A        K G   D + Y  +I+G C  N
Sbjct: 502 EMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKAN 561

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++E  +LF +MV   I    V Y  LI    E      A  L   +           YS
Sbjct: 562 RVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYS 621

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL  +G  + A + LD++ ++GL P VV Y  LI G CK G + + D +L +M   
Sbjct: 622 SLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSIN 681

Query: 175 GCFPDSTSFNTVIQG 189
              P+  ++  +I G
Sbjct: 682 NVHPNKITYTIMING 696



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++R K +   YG+ ING+ K+   D A         +G   +  VY++LI+G C    
Sbjct: 258 MEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN 317

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+++ D M++ GI+   VT N LI    +      A  LL+ +      +N   ++ 
Sbjct: 318 ISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTS 377

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI  LC   R++ A   + ++  +   P      +L++GLC+ G   EA +L  ++ EKG
Sbjct: 378 VIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKG 437

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              ++ + N +I G       + A+  LK+
Sbjct: 438 FAANTVTSNALIHGLCEAGSKEEAAKLLKE 467



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 102/182 (56%), Gaps = 5/182 (2%)

Query: 13  HVYGIRIN--GMCKIREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           HVY  +    G   + E+ S +  KG+   +   + L++ L   N +K + ++FD M   
Sbjct: 132 HVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHC 191

Query: 70  GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G+T ++  ++ ++ + +   GR   A+ L + +E+     N+  Y+ +I GLC+ GR +E
Sbjct: 192 GVTPDVYLFSTMV-NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDE 250

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A +  +++ ++ + P +VTY +LINGL K     EA+ +L +M ++G  P++  +NT+I 
Sbjct: 251 AFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310

Query: 189 GF 190
           G+
Sbjct: 311 GY 312



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 104/209 (49%), Gaps = 8/209 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           + FK N  +  + ++G+C+  +   AI+       KG   +    ++LI+GLC     +E
Sbjct: 401 RNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEE 460

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +L  +M+ +G+  + ++YN LI    ++        L + + R   + ++  Y++++ 
Sbjct: 461 AAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLH 520

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC +G+ EEA     +  + G  P   TY I+I+G CK   + E +KL  +M       
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQ 580

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++  + T+I+ +  +N   R +  L+ +M
Sbjct: 581 NAVVYGTLIRAY-CENGNMREAFRLRDDM 608


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 15  YGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           YG  + G+C++R+ D A   + +   L+V +++++I G     +L EA EL++ M  +G 
Sbjct: 283 YGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGC 342

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +  TY+ L+H    K GR  SA+ LL+ +E+  +  N+  Y++V+   C+ G W++ R
Sbjct: 343 QPDAHTYSILMH-GLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 401

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L+++S KGL      YN +I  LCK G + EA  L+ +M+ +GC PD  S+NT+I   
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIY-H 460

Query: 191 LVKNETDRASSFLKKNM 207
           L  NE    +  + +N+
Sbjct: 461 LCNNEQMEEAEHMFENL 477



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I  +CK   +D A+        +G   D+  Y+++I  LC 
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +++EA  +F+ ++ +G+ A  +TYN +IH    + GR+  A+ L + +      L++ 
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIH-ALLRDGRWQDAVRLAKEMILHGCSLDVV 522

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  +C+ G  + +   L++++EKG+ P  V+YNILI+ LCK+  + +A +L  QM
Sbjct: 523 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 582

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +G  PD  ++NT+I G         A + L+K
Sbjct: 583 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 616



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ++G+CK+  I SA+       KKG   +V  Y+ +++  C      +   L ++
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G+T     YN +I+    K GR   AM L+Q +       +I  Y+ +I  LC   
Sbjct: 407 MSAKGLTLNSQGYNGMIY-ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + EEA    + L E+G+V   +TYN +I+ L + G   +A +L  +M   GC  D  S+N
Sbjct: 466 QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYN 525

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I+        DR+   L++
Sbjct: 526 GLIKAMCKDGNVDRSLVLLEE 546



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I  +C   +++ A       +++G+  +   Y+++I+ L    R ++AV L  +M+
Sbjct: 454 YNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 513

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + ++V+YN LI    +      ++ LL+ +     + N   Y+++I  LC+  R  
Sbjct: 514 LHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVR 573

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   Q+  +GL P +VTYN LINGLCK G +  A  LL ++  +   PD  ++N +I
Sbjct: 574 DALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633

Query: 188 QGFLVKNETDRASSFLKKNM 207
                    D A+  L + M
Sbjct: 634 SWHCKVRLLDDAAMLLNRAM 653



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 14/216 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLC 51
           ++ ++ F  N   Y I ++  CK          + E+ +   KG+ L+   Y+ +I  LC
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA---KGLTLNSQGYNGMIYALC 427

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R+ EA+ L  +M +QG   ++ +YN +I+     +    A  + + L  +    N  
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  L R GRW++A +   ++   G    VV+YN LI  +CK G +  +  LL +M
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            EKG  P++ S+N +I   L K    R +  L K M
Sbjct: 548 AEKGIKPNNVSYNILISE-LCKERRVRDALELSKQM 582



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  +  ++ G+C   R++EA  L D+M+ +G    ++TY  L+      +    A
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            A+L  +     ELN+ +++ VI G    G+  EA +  + +  KG  P   TY+IL++G
Sbjct: 300 RAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK G I  A +LL +M++KG  P+  ++  V+  F      D   + L++
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F +      LC   R  EA+ L   M   G   + V Y  +IH   ++ G   A  LL  
Sbjct: 176 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  +  V+ G+C +GR  EA + +D++  KG +PGV+TY  L+ GLC+   
Sbjct: 236 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             EA  +L ++ E     +   FNTVI G L + +   A+  
Sbjct: 296 ADEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATEL 333



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLV 116
           A+ L D++  + G+     +YN ++           A+AL + +  RD+       + + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
              LCR+GR +EA   L  ++  G VP  V Y  +I+ LC +G + EA  LL +M   GC
Sbjct: 182 ARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             D  +F+ V++G         A+  + + M
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMM 272



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 57/112 (50%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL+ + R     +  +Y  VI  LC  G   EA   L+++   G    V T++ ++ 
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVR 253

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G+C  G + EA +L+ +M  KGC P   ++  ++QG     + D A + L +
Sbjct: 254 GMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 305


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 15  YGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           YG  + G+C++R+ D A   + +   L+V +++++I G     +L EA EL++ M  +G 
Sbjct: 267 YGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGC 326

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +  TY+ L+H    K GR  SA+ LL+ +E+  +  N+  Y++V+   C+ G W++ R
Sbjct: 327 QPDAHTYSILMH-GLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 385

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L+++S KGL      YN +I  LCK G + EA  L+ +M+ +GC PD  S+NT+I   
Sbjct: 386 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIY-H 444

Query: 191 LVKNETDRASSFLKKNM 207
           L  NE    +  + +N+
Sbjct: 445 LCNNEQMEEAEHMFENL 461



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I  +CK   +D A+        +G   D+  Y+++I  LC 
Sbjct: 388 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 447

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +++EA  +F+ ++ +G+ A  +TYN +IH    + GR+  A+ L + +      L++ 
Sbjct: 448 NEQMEEAEHMFENLLEEGVVANGITYNTIIH-ALLRDGRWQDAVRLAKEMILHGCSLDVV 506

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  +C+ G  + +   L++++EKG+ P  V+YNILI+ LCK+  + +A +L  QM
Sbjct: 507 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 566

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +G  PD  ++NT+I G         A + L+K
Sbjct: 567 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 600



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ++G+CK+  I SA+       KKG   +V  Y+ +++  C      +   L ++
Sbjct: 331 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 390

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G+T     YN +I+    K GR   AM L+Q +       +I  Y+ +I  LC   
Sbjct: 391 MSAKGLTLNSQGYNGMIY-ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 449

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + EEA    + L E+G+V   +TYN +I+ L + G   +A +L  +M   GC  D  S+N
Sbjct: 450 QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYN 509

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I+        DR+   L++
Sbjct: 510 GLIKAMCKDGNVDRSLVLLEE 530



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I  +C   +++ A       +++G+  +   Y+++I+ L    R ++AV L  +M+
Sbjct: 438 YNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 497

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + ++V+YN LI    +      ++ LL+ +     + N   Y+++I  LC+  R  
Sbjct: 498 LHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVR 557

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   Q+  +GL P +VTYN LINGLCK G +  A  LL ++  +   PD  ++N +I
Sbjct: 558 DALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 617

Query: 188 QGFLVKNETDRASSFLKKNM 207
                    D A+  L + M
Sbjct: 618 SWHCKVRLLDDAAMLLNRAM 637



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 14/216 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLC 51
           ++ ++ F  N   Y I ++  CK          + E+ +   KG+ L+   Y+ +I  LC
Sbjct: 355 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA---KGLTLNSQGYNGMIYALC 411

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R+ EA+ L  +M +QG   ++ +YN +I+     +    A  + + L  +    N  
Sbjct: 412 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 471

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  L R GRW++A +   ++   G    VV+YN LI  +CK G +  +  LL +M
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            EKG  P++ S+N +I   L K    R +  L K M
Sbjct: 532 AEKGIKPNNVSYNILISE-LCKERRVRDALELSKQM 566



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  +  ++ G+C   R++EA  L D+M+ +G    ++TY  L+      +    A
Sbjct: 224 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 283

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            A+L  +     ELN+ +++ VI G    G+  EA +  + +  KG  P   TY+IL++G
Sbjct: 284 RAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 339

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK G I  A +LL +M++KG  P+  ++  V+  F      D   + L++
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 390



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F +      LC   R  EA+ L   M   G   + V Y  +IH   ++ G   A  LL  
Sbjct: 160 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 219

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  +  V+ G+C +GR  EA + +D++  KG +PGV+TY  L+ GLC+   
Sbjct: 220 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 279

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             EA  +L ++ E     +   FNTVI G L + +   A+  
Sbjct: 280 ADEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATEL 317



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + + RD+       + +    LCR+GR +EA   L  ++  G VP  V Y  +I+ LC +
Sbjct: 148 RMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQ 207

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G + EA  LL +M   GC  D  +F+ V++G         A+  + + M
Sbjct: 208 GGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMM 256



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 57/112 (50%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL+ + R     +  +Y  VI  LC  G   EA   L+++   G    V T++ ++ 
Sbjct: 178 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVR 237

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G+C  G + EA +L+ +M  KGC P   ++  ++QG     + D A + L +
Sbjct: 238 GMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 289


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + +  ++ N  VY   I+G+CK  E++ A+       KKG+  DV  Y++L+ GLC   R
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A  +   M+ + I  ++VT+  LI D + KQG    A  L + + +   + N   Y+
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALI-DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR  +A+K  D ++ KG  P VVTYN LI+G CK  M+ E  KL  +M  +
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D  ++NT+I G+
Sbjct: 346 GFNADIFTYNTLIHGY 361



 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 9/183 (4%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I G CK + ++  +K       +G+  D F Y++LI+G C   +L  A ++F++M
Sbjct: 851  TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 910

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            V  G++ ++VTYN L+ D     G+   A+ +++ L++ + +++I  Y+++I GLCR  +
Sbjct: 911  VDCGVSPDIVTYNILL-DCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDK 969

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +EA      L+ KG+ P  + Y  +I+GLC+KG+  EADKL  +MKE G  P    ++ 
Sbjct: 970  LKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDE 1029

Query: 186  VIQ 188
             ++
Sbjct: 1030 TLR 1032



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N  +Y   ING+CK R++++A+       KKGI  D   Y++LI+GL    R  +A 
Sbjct: 705 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 764

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
            L   MV + I   ++ +  LI D + K+G    A  L + + R     N+  Y+ +I+G
Sbjct: 765 RLLRDMVKRKIDPNVIFFTALI-DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 823

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C  G   +A+   D +  KG  P VVTYN LI G CK   + +  KL  +M  +G   D
Sbjct: 824 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 883

Query: 180 STSFNTVIQGF 190
           + ++NT+I G+
Sbjct: 884 AFTYNTLIHGY 894



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 7/172 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK R +D  +K       +G   D+F Y++LI+G C   +L+ A+++F
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV++ +T +++T+  L+H         SA+     +   +  + I  Y+++I GLC+ 
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            + E+A +   +L  +G+ P   TY I+I GLCK G   EAD+L+ +MKE+G
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 8/201 (3%)

Query: 14  VYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C         +  D    KG   +V  Y++LI+G C F  + E ++LF +M
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G  A++ TYN LIH   +      A+ +   +   +   +I  + +++ GLC  G  
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEI 402

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A  K D + E     G+V YNI+I+GLCK   + +A +L  ++  +G  PD+ ++  +
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           I G L KN   R +  L + M
Sbjct: 463 ILG-LCKNGPRREADELIRRM 482



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ LI+  C  +RL  A+ +  KM+  G    +VT+  L+H          A
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            +L+  + +  YE N+ VY+ +IDGLC+ G    A + L+++ +KGL   VVTYN L+ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC  G   +A ++L  M ++   PD  +F  +I  F+ +   D A    K+
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 44/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + I I+  C+   +  A+       K G    +  + SL++G C  NR+ +A  L 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             MV  G    +V YN LI D   K G  + A+ LL  +E+     ++  Y+ ++ GLC 
Sbjct: 165 ILMVKSGYEPNVVVYNTLI-DGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 123 VGRWEEARKKLDQLSEKGLVPGV-----------------------------------VT 147
            GRW +A + L  + ++ + P V                                   VT
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN +INGLC  G + +A K    M  KGCFP+  ++NT+I GF
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 37/195 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA----------------------- 68
           +K G    +    SL+NG C  NR +EAV L D M                         
Sbjct: 666 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 725

Query: 69  ------------QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
                       +GI A+ VTYN LI       GR++ A  LL+ + + K + N+  ++ 
Sbjct: 726 NNALEVFYCMEKKGIRADAVTYNTLI-SGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID   + G   EAR    ++  + +VP V TYN LING C  G + +A  +   M  KG
Sbjct: 785 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 176 CFPDSTSFNTVIQGF 190
           CFPD  ++NT+I GF
Sbjct: 845 CFPDVVTYNTLITGF 859



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 11   NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            N   Y   ING C            D  + KG   DV  Y++LI G C   R+++ ++LF
Sbjct: 813  NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 872

Query: 64   DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +M  QG+  +  TYN LIH   +      A  +   +       +I  Y++++D LC  
Sbjct: 873  CEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 932

Query: 124  GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            G+ E+A   ++ L +  +   ++TYNI+I GLC+   + EA  L   +  KG  PD+ ++
Sbjct: 933  GKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 992

Query: 184  NTVIQGFL---VKNETDRASSFLKKN 206
             T+I G     ++ E D+    +K++
Sbjct: 993  ITMISGLCRKGLQREADKLCRRMKED 1018



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           ++ L+       R +  +    KM   GI+ +L ++  LIH  + +  R S A+++L  +
Sbjct: 74  FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH-CFCRCSRLSFALSVLGKM 132

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  YE +I  +  ++ G C V R  +A   +  + + G  P VV YN LI+GLCK G +
Sbjct: 133 MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGEL 192

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             A +LL +M++KG   D  ++NT++ G         A+  L+  M
Sbjct: 193 NIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ ++  +   N+    + L+ KM   GI+ +L ++  LIH          A+ALL  + 
Sbjct: 607 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 666

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +  +I     +++G C+  R++EA   +D +   G VP VV YN +INGLCK   + 
Sbjct: 667 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 726

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            A ++   M++KG   D+ ++NT+I G         A+  L+
Sbjct: 727 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLR 768



 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+CK  +++ A +       +G+  D   Y+ +I GLC     +EA EL  +M
Sbjct: 423 AYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRM 482

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
             +GI  ++   +  + ++       S ++L +  ER K
Sbjct: 483 KEEGIICQMNAEDDHLEEHSSSNKEIS-LSLREIWERSK 520



 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            DL +     +   Y I I G+C+  ++  A        +KG+  D   Y ++I+GLC   
Sbjct: 944  DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
              +EA +L  +M   G       Y+  + D++
Sbjct: 1004 LQREADKLCRRMKEDGFMPSERIYDETLRDHY 1035


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C   ++  A       I K I  +V+ Y+ LI+ LC   ++KEA  L 
Sbjct: 226 NVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLL 285

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G  A++VTY  L+    + Q    A AL   ++    + N   Y+ +IDGLC+ 
Sbjct: 286 AEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKG 345

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR ++A+K    L  KG    V TYN++I GLCK+GM+ EA  +  +M++ GC P+  +F
Sbjct: 346 GRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTF 405

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I+    K+E D+A   L +
Sbjct: 406 EIIIRSLFKKDENDKAEKLLHE 427



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ N   YG  +NG+CKI E   AIK           L+V +Y+++I+GLC    
Sbjct: 148 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKL 207

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA + + +M A+GI   ++TY  LI           A +LL  +       N+  Y++
Sbjct: 208 VNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAI 267

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+ +EA+  L ++  +G    VVTY  L++G CK   + +A  L ++MKE G
Sbjct: 268 LIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWG 327

Query: 176 CFPDSTSFNTVIQGF 190
             P+  ++  +I G 
Sbjct: 328 IQPNKYTYTALIDGL 342



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I I+ +CK  ++  A         +G   DV  Y+SL++G C    L +A  LF
Sbjct: 261 NVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALF 320

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM   GI     TY  LI D   K GR   A  L Q L      +++  Y+++I GLC+
Sbjct: 321 MKMKEWGIQPNKYTYTALI-DGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCK 379

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            G  +EA     ++ + G +P VVT+ I+I  L KK    +A+KLL +M  KG
Sbjct: 380 EGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKG 432



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I IN  C + ++  +       +K G   +    ++L+ GLC    ++++V   
Sbjct: 86  NLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFH 145

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DK+VAQG     V+Y  L++   +      A+  L+ +E     LN+ +Y+ +IDGLC+ 
Sbjct: 146 DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKD 205

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYN---------------------------------- 149
               EA     +++ +G+ P V+TY                                   
Sbjct: 206 KLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTY 265

Query: 150 -ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ILI+ LCK+G + EA  LL +M  +G   D  ++ +++ GF      D+A++   K
Sbjct: 266 AILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMK 322



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  +  + K++   +AI        KGI  ++   + LIN  C   ++  +  +  K++
Sbjct: 55  FGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKIL 114

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G     +T   L+     K     ++     +    +++N   Y  +++GLC++G   
Sbjct: 115 KLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETR 174

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K L  + +      VV YN +I+GLCK  ++ EA     +M  +G FP+  ++ T+I
Sbjct: 175 CAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLI 234

Query: 188 QGFLVKNETDRASSFLKK 205
            GF +  +   A S L +
Sbjct: 235 GGFCLAGQLTGAFSLLNE 252


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +GI I+  CK  ++D A+        KG+  D+ VY+SLI G C    L     LFD++
Sbjct: 214 TWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G +   +TYN LI   + K GR   A  + + +       N+  Y+ +IDGLC VG+
Sbjct: 274 LERGDSPCAITYNTLIR-GFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGK 332

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA + L+ + +K   P VVTYNI+IN LCK  ++ +A +++  MK++   PD+ ++N+
Sbjct: 333 TKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNS 392

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G   K + D AS  L
Sbjct: 393 LLGGLCAKGDLDEASKLL 410



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---------DVFVYSSLINGLCTF 53
           + ++R + +   Y   + G+C   ++D A K    +         DV  +++LI+GLC  
Sbjct: 378 MKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKG 437

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           NRL +A++++D +V +    ++VT N L++   +      AM L + +   K   N + Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTY 497

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C+ G    A+  L ++    L P V  YN L++ LCKKG + +A +L  +M+ 
Sbjct: 498 TTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQR 557

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              FPD  SFN +I G L   +   A S L
Sbjct: 558 DDSFPDVISFNIMIDGSLKAGDIKSAESLL 587



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N + Y I + G+C+  E   A+       +  +  DV  Y+++I G C    L++A+
Sbjct: 138 FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKAL 197

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L ++M   G +  LVT+  LI D + K G+   AM LL+ ++    E ++ VY+ +I G
Sbjct: 198 QLANEMQGSGCSWSLVTWGILI-DAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRG 256

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C  G  +  +   D++ E+G  P  +TYN LI G CK G + EA ++   M E+G  P+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPN 316

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             ++  +I G     +T  A   L
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLL 340



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E + KG   +  VY   I G C   E+D         +++G       Y++LI G C 
Sbjct: 235 LKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RLKEA E+F+ M+ +G+   + TY  LI           A+ LL  + +   E N+  
Sbjct: 295 LGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVT 354

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++I+ LC+     +A + ++ + ++   P  +TYN L+ GLC KG + EA KLL  M 
Sbjct: 355 YNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLML 414

Query: 173 EKGCF--PDSTSFNTVIQGFLVKNETDRA 199
           +   +  PD  SFN +I G    N   +A
Sbjct: 415 KDSSYTDPDVISFNALIHGLCKGNRLHQA 443



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G   +V+ Y+ L+ GLC      +AV L  +M    +  ++V+YN +I    E +  
Sbjct: 134 LKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKEL 193

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L   ++      ++  + ++ID  C+ G+ +EA   L ++  KGL   ++ Y  L
Sbjct: 194 EKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSL 253

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I G C  G +     L  ++ E+G  P + ++NT+I+GF
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 44/221 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK+  +  A       +++G+  +V+ Y+ LI+GLC   + KEA++L + M
Sbjct: 284 TYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +     +VTYN +I+   +      A+ +++ +++ +   +   Y+ ++ GLC  G  
Sbjct: 344 LQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDL 403

Query: 127 EEARKKL------------DQLSEKGLVPG-------------------------VVTYN 149
           +EA K L            D +S   L+ G                         +VT N
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTN 463

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           IL+N   K G + +A +L  Q+      P+S ++ T+I GF
Sbjct: 464 ILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGF 504



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 70/147 (47%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A   + KM+        V+ + L+    + +    A  +L  + +  +  N+  Y++++ 
Sbjct: 91  AFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLK 150

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLCR   + +A   L ++ +  L+P VV+YN +I G C+   + +A +L  +M+  GC  
Sbjct: 151 GLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSW 210

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
              ++  +I  F    + D A   LK+
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGLLKE 237


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 12/202 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI +++ A+       + G   +V  YS+L+ GL    ++ +A +LF  M 
Sbjct: 274 YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMK 333

Query: 68  AQGITAELVTYNPLIHDNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           A GI+ +   Y  +  D   K G  F AM L   L+   ++L+ E YS +IDGLC+ G+ 
Sbjct: 334 ASGISVDSCIY-VIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV 392

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL---LVQMKEKGCFPDSTSF 183
           E A +   QLS++GL P VVT NI+I+G C+   + +A+ L   + +M+E GC PD  ++
Sbjct: 393 EIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITY 452

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+++GF   N+ +   + L K
Sbjct: 453 NTLLRGFCESNKLEEVVNLLHK 474



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 13/185 (7%)

Query: 21  GMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+CK+   D A +       +G+  +V  YSSL++G C   +L+E+  LF++MV QG+  
Sbjct: 172 GLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP 231

Query: 74  ELVTYNPLIHDNWEKQGRF----SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            LV +N LI D   K+G+     SA  L  ++     E N   Y+++I+G C++ + EEA
Sbjct: 232 NLVQFNVLI-DILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 290

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
               +++ + G  P V TY+ L+ GL + G + +A+KL   MK  G   DS  +   + G
Sbjct: 291 MNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDG 350

Query: 190 FLVKN 194
            L KN
Sbjct: 351 -LCKN 354



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 6/162 (3%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE--KQGRF 92
           G+  D+F  + L N LC  NR+ E +     ++ +G   ++VTYN LI   +   K G  
Sbjct: 120 GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHE 179

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  + + ++      N+  YS ++ G C  G+ EE+++  +++ ++G+ P +V +N+L
Sbjct: 180 DEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVL 239

Query: 152 INGLCKKGMIME---ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+ LCK+G I +   A KL + M  KGC  +  S+  +I G+
Sbjct: 240 IDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGY 281



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+ GL   N   +   L++KM   G++ +L T N L +           +A +  + 
Sbjct: 93  FNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGIL 152

Query: 103 RDKYELNIEVYSLVIDGL---CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           R  Y  +I  Y+ +I GL   C+VG  +EA++  +++  +G++P V++Y+ L++G C  G
Sbjct: 153 RRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAG 212

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            + E+ +L  +M ++G  P+   FN +I
Sbjct: 213 KLEESKRLFNEMVDQGVQPNLVQFNVLI 240



 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  ++ ++ GL ++  + +     +++   GL P + T NIL N LC    + E    + 
Sbjct: 90  ISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMT 149

Query: 170 QMKEKGCFPDSTSFNTVIQGF 190
            +  +G  PD  ++NT+I+G 
Sbjct: 150 GILRRGYIPDIVTYNTLIKGL 170



 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L    FK +F  Y   I+G+CK  +++ A        ++G+  +V   + +I+G C   
Sbjct: 366 ELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVE 425

Query: 55  RLKEAVELFDKMVA---QGITAELVTYNPLI 82
           ++ +A  LF+KM      G T +++TYN L+
Sbjct: 426 QVDKANILFEKMEKMEENGCTPDIITYNTLL 456


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 110/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  CK  E+ +A       ++ G+  ++  Y +LI+GLC    L  A EL D+M
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   +  YN +++   +      A+ L++ +E    + +   Y+ VID  CR+G  
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K L ++ ++GL P VVT+N+L+NG C  GM+ + D+LL  M EKG  PD+ ++NT+
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++   ++N  +  +   K+
Sbjct: 615 MKQHCIRNSMNTTTKIYKR 633



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +     N   YG  I+G+CK  E+D+A        KKG+ L+V +Y+S++NG+C   
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +++A++L  +M   GI  + +TY  +I D + + G    A  LLQ +     +  +  +
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVI-DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++++G C +G  E+  + L  + EKG+VP  +TYN L+   C +  +    K+  +M+ 
Sbjct: 577 NVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRN 636

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G  PDS ++N +I+G   K    + + FL K M
Sbjct: 637 QGVAPDSNTYNILIKGH-CKARNLKEAWFLYKEM 669



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I  +C++ ++  A +       +    DV  YS++I+G C    LK+A++L D M 
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TYN +I    +    F A  +L+ +   K   +  VY+ +I G  ++G   
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K  D++  K + P  +TY  LI G  + G ++E   L  +M  +G  PD  ++ T+I
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 188 QGFLVKNETDRASSF 202
             +    E   A S 
Sbjct: 441 DVYCKAGEMVNAFSL 455



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 28  IDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           I+ AIK     GI  +   Y+ +I  LC   ++KEA  L  +M  +  T ++V+Y+ +I 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVI- 300

Query: 84  DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           D +   G    A+ L+  ++    + N   Y+ +I  LC++G+  EA K L ++  + ++
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKII 360

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P  V Y  LI+G  K G +  A+K   +M  K   PD  ++ T+IQGF
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G C + E+  A+K       KG+  + + Y+S+I  LC   +  EA ++  +M+
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +Q I  + V Y  LIH  ++     +A      +   K   +   Y+ +I G  + G+  
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E +    ++  +GL P  VTY  LI+  CK G ++ A  L  +M + G  P+  ++  +I
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 188 QGFLVKNETDRASSFL 203
            G     E D A+  L
Sbjct: 476 DGLCKHGELDTANELL 491



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  C++ +ID A K       +G+   V  ++ L+NG C    L++   L   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI  + +TYN L+  +  +    +   + + +       +   Y+++I G C+    
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +EA     ++ EKG VP V +YN LI    KK    EA +L  +M+  G   D   +N
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYN 717



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           E +E+  K+  + GI+    +YN +I+          A  LL  ++      ++  YS V
Sbjct: 240 EGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG C +G  ++A K +D +  KGL P   TYN +I  LCK G   EA+K+L +M  +  
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 177 FPDSTSFNTVIQGFL 191
            PD+  + T+I GF 
Sbjct: 360 IPDNVVYTTLIHGFF 374



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 33/124 (26%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------------- 145
           N   + +    L  +G   EARK LD+L   GLV  V                       
Sbjct: 189 NPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKV 248

Query: 146 ----------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
                      +YNI+I  LC+ G + EA +LL+QM  +   PD  S++TVI G+    E
Sbjct: 249 FCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 196 TDRA 199
             +A
Sbjct: 309 LKKA 312



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   Y+ LI G C    LKEA  L+ +M+ +G    + +YN LI   ++K+    
Sbjct: 637 QGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXE 696

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           A  L + +       + E+Y+  +D     G  E      D+  EK L+
Sbjct: 697 ARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCLL 745


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 110/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  CK  E+ +A       ++ G+  ++  Y +LI+GLC    L  A EL D+M
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   +  YN +++   +      A+ L++ +E    + +   Y+ VID  CR+G  
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K L ++ ++GL P VVT+N+L+NG C  GM+ + D+LL  M EKG  PD+ ++NT+
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++   ++N  +  +   K+
Sbjct: 615 MKQHCIRNSMNTTTKIYKR 633



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +     N   YG  I+G+CK  E+D+A        KKG+ L+V +Y+S++NG+C   
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +++A++L  +M   GI  + +TY  +I D + + G    A  LLQ +     +  +  +
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVI-DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++++G C +G  E+  + L  + EKG+VP  +TYN L+   C +  +    K+  +M+ 
Sbjct: 577 NVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRN 636

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G  PDS ++N +I+G   K    + + FL K M
Sbjct: 637 QGVAPDSNTYNILIKGH-CKARNLKEAWFLYKEM 669



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I  +C++ ++  A +       +    DV  YS++I+G C    LK+A++L D M 
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TYN +I    +    F A  +L+ +   K   +  VY+ +I G  ++G   
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K  D++  K + P  +TY  LI G  + G ++E   L  +M  +G  PD  ++ T+I
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 188 QGFLVKNETDRASSF 202
             +    E   A S 
Sbjct: 441 DVYCKAGEMVNAFSL 455



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  C++ +ID A K       +G+   V  ++ L+NG C    L++   L   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI  + +TYN L+  +  +    +   + + +       +   Y+++I G C+    
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +EA     ++ EKG VP V +YN LI    KK  I+EA +L  +M+  G   D   +N
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYN 717



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 28  IDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           I+ AIK     GI  +   Y+ +I  LC   ++KEA  L  +M  +  T ++V+Y+ +I 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVI- 300

Query: 84  DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           D +   G    A+ L+  ++    + N   Y+ +I  LC++G+  EA K L ++  + ++
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKII 360

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P  V Y  LI+G  K G +  A+K   +M  K   PD  ++ T+IQGF
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G C + E+  A+K       KG+  + + Y+S+I  LC   +  EA ++  +M+
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +Q I  + V Y  LIH  ++     +A      +   K   +   Y+ +I G  + G+  
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E +    ++  +GL P  VTY  LI+  CK G ++ A  L  +M + G  P+  ++  +I
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 188 QGFLVKNETDRASSFL 203
            G     E D A+  L
Sbjct: 476 DGLCKHGELDTANELL 491



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           E +E+  K+  + GI+    +YN +I+          A  LL  ++      ++  YS V
Sbjct: 240 EGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG C +G  ++A K +D +  KGL P   TYN +I  LCK G   EA+K+L +M  +  
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 177 FPDSTSFNTVIQGFL 191
            PD+  + T+I GF 
Sbjct: 360 IPDNVVYTTLIHGFF 374



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 33/124 (26%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------------- 145
           N   + +    L  +G   EARK LD+L   GLV  V                       
Sbjct: 189 NPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKV 248

Query: 146 ----------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
                      +YNI+I  LC+ G + EA +LL+QM  +   PD  S++TVI G+    E
Sbjct: 249 FCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 196 TDRA 199
             +A
Sbjct: 309 LKKA 312



 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   Y+ LI G C    LKEA  L+ +M+ +G    + +YN LI   ++K+    
Sbjct: 637 QGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILE 696

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           A  L + +       + E+Y+  +D     G  E      D+  EK L+
Sbjct: 697 ARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCLL 745


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI I+G+CK  +   A+        +GI  +  +YS +++GLC   ++ +A  LF KM
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKM 259

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G   +L+TYN L+ + + K G    A  LLQ L +D + L +  Y  +I+GL R  R
Sbjct: 260 RASGCNRDLITYNVLL-NGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARR 318

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +EEA     ++  + + P V+ Y I+I GL ++G + EA  LL +M E+G  PD+  +N 
Sbjct: 319 YEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNA 378

Query: 186 VIQGFLVKNETDRASSF 202
           +I+GF      D A S 
Sbjct: 379 LIKGFCDMGYLDEAESL 395



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + +NG CK   +D A        K G  L V  Y  LINGL    R +EA   + KM
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I  +++ Y  +I     ++GR + A+ LL  +       +   Y+ +I G C +G 
Sbjct: 330 LRENIKPDVMLYTIMIR-GLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGY 388

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA     ++S+    P   TY+ILI G+CK G+I +A  +  +M++ GC P   +FN+
Sbjct: 389 LDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNS 448

Query: 186 VIQGFLVKNETDRA 199
           +I G    N  + A
Sbjct: 449 LINGLCKANRLEEA 462



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 29/187 (15%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N H Y I I GMCK   I+ A      ++K  CL  V  ++SLINGLC  NRL+EA  LF
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M       E+V              R  ++ L  +   DK   +I    ++++ LC  
Sbjct: 467 YQM-------EIV--------------RKPSLFLRLSQGTDKV-FDIASLQVMMERLCES 504

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   +A K L QL + G++P + TYNILING CK G I  A KL  +M+ KG  PDS ++
Sbjct: 505 GMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTY 564

Query: 184 NTVIQGF 190
            T+I G 
Sbjct: 565 GTLIDGL 571



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 84/163 (51%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            +S LI         ++AVE F  M       +L  +N ++H    K+    A+A+   +
Sbjct: 130 AFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQM 189

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +     ++  Y ++I GLC+  + ++A    D+++++G++P  + Y+I+++GLC+   I
Sbjct: 190 LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKI 249

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +A +L  +M+  GC  D  ++N ++ GF      D A + L+
Sbjct: 250 FDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQ 292


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E   + N   YG  ++GMCKI +  SA+           I  +V +YS++I+GL    
Sbjct: 204 MVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDG 263

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A  L+ +M  +GI  +L TYN +I D +   GR+S A  LLQ +   K   N+  Y
Sbjct: 264 RHSDAHNLYTEMQEKGIFPDLFTYNCMI-DGFCSSGRWSEAQRLLQEMLERKINPNVVTY 322

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I+   +  ++ EA +  D++  +G++P  +TYN +I+G CK+  +  A+ +   M  
Sbjct: 323 SALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMAT 382

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC PD  +FNT+I G+      D  +  L +
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE 414



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 20/208 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE     +   Y   I+G C + ++++A       I  G+C D+   ++L++GLC   
Sbjct: 414 EMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 473

Query: 55  RLKEAVELFDKMVAQ-----------GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE 102
           +LK+A+E+F  M              G+  ++ TYN LI      +G+F  A  L + + 
Sbjct: 474 KLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILI-SGLINEGKFLEAEELYKEMP 532

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 N   YS +I+GLC+  R +EA +  D +  K   P VVT+N L++G CK G + 
Sbjct: 533 HRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVD 592

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +L  +M  +G   D+ ++ T+I GF
Sbjct: 593 DGLELFCEMGRRGIVADAITYITLIHGF 620



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 10/208 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
            DL  Q  + N   +   +NG+C+       +  +D  ++ G+  +   Y ++++G+C  
Sbjct: 167 LDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKI 226

Query: 54  NRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
                A+ L  KM     I   +V Y+ +I   W K GR S A  L   ++      ++ 
Sbjct: 227 GDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLW-KDGRHSDAHNLYTEMQEKGIFPDLF 285

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +IDG C  GRW EA++ L ++ E+ + P VVTY+ LIN   K+    EA++L  +M
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +G  P++ ++N++I GF  +N  D A
Sbjct: 346 LPRGIIPNTITYNSMIDGFCKQNRLDAA 373



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 20/198 (10%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C  + ID   +        G+  D   Y++LI+G C    L  A++L  +M++ G+
Sbjct: 396 IDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV 455

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYEL-----------NIEVYSLVIDG 119
             ++VT N L+ D     G+   A+ + + +++ K +L           +++ Y+++I G
Sbjct: 456 CPDIVTCNTLL-DGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L   G++ EA +   ++  +G+VP  +TY+ +INGLCK+  + EA ++   M  K   PD
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 180 STSFNTVIQGFLVKNETD 197
             +FNT++ G+      D
Sbjct: 575 VVTFNTLVSGYCKAGRVD 592



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 14/204 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + I I   C   ++  A+       K G   DV  +S+L++GLC  +R+ EA++LF
Sbjct: 111 DVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLF 170

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M    +    VT+  L+ +   ++GR   A+ALL  +  D  + N   Y  ++DG+C+
Sbjct: 171 HQMCRPNV----VTFTTLM-NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCK 225

Query: 123 VGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +G    A   L ++ E   + P VV Y+ +I+GL K G   +A  L  +M+EKG FPD  
Sbjct: 226 IGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLF 285

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N +I GF        A   L++
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQE 309



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 12/198 (6%)

Query: 4   TEQRFKGNFH---VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTF 53
           TE + KG F     Y   I+G C         R +   +++ I  +V  YS+LIN     
Sbjct: 273 TEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKE 332

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
            +  EA EL+D+M+ +GI    +TYN +I D + KQ R  +A  +   +       ++  
Sbjct: 333 RKFFEAEELYDEMLPRGIIPNTITYNSMI-DGFCKQNRLDAAEHMFYVMATKGCSPDVFT 391

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ +IDG C   R ++  + L +++E GLV    TYN LI+G C  G +  A  L  QM 
Sbjct: 392 FNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMI 451

Query: 173 EKGCFPDSTSFNTVIQGF 190
             G  PD  + NT++ G 
Sbjct: 452 SSGVCPDIVTCNTLLDGL 469



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+ +M  +GI    +TY+ +I +   KQ R   
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMI-NGLCKQSRLDE 558

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  ++  ++ ++ G C+ GR ++  +   ++  +G+V   +TY  LI+
Sbjct: 559 ATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIH 618

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K G I  A  +  +M   G +PD+ +  +++     K E  RA + L+
Sbjct: 619 GFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLE 669



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 39/173 (22%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +K I  DV+ ++ LI   C+ ++L  A+  F K+   G   ++VT++ L+H         
Sbjct: 105 RKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLH--------- 155

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                                     GLC   R  EA     Q+      P VVT+  L+
Sbjct: 156 --------------------------GLCVEDRVSEALDLFHQMCR----PNVVTFTTLM 185

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           NGLC++G ++EA  LL +M E G  P+  ++ T++ G     +T  A + L+K
Sbjct: 186 NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRK 238


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + +  ++ N  VY   I+G+CK  E++ A+       KKG+  DV  Y++L+ GLC   R
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A  +   M+ + I  ++VT+  LI D + KQG    A  L + + +   + N   Y+
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALI-DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR  +A+K  D ++ KG  P VVTYN LI+G CK  M+ E  KL  +M  +
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D  ++NT+I G+
Sbjct: 346 GFNADIFTYNTLIHGY 361



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 7/172 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK R +D  +K       +G   D+F Y++LI+G C   +L+ A+++F
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV++ +T +++T+  L+H         SA+     +   +  + I  Y+++I GLC+ 
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            + E+A +   +L  +G+ P   TY I+I GLCK G   EAD+L+ +MKE+G
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +     N   Y   ING+C         +  D    KG   +V  Y++LI+G C F 
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + E ++LF +M  +G  A++ TYN LIH   +      A+ +   +   +   +I  + 
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++ GLC  G  E A  K D + E     G+V YNI+I+GLCK   + +A +L  ++  +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  PD+ ++  +I G L KN   R +  L + M
Sbjct: 451 GVKPDARTYTIMILG-LCKNGPRREADELIRRM 482



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ ++ LI+  C  +RL  A+ +  KM+  G    +VT+  L+H          A
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            +L+  + +  YE N+ VY+ +IDGLC+ G    A + L+++ +KGL   VVTYN L+ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC  G   +A ++L  M ++   PD  +F  +I  F+ +   D A    K+
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 44/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + I I+  C+   +  A+       K G    +  + SL++G C  NR+ +A  L 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             MV  G    +V YN LI D   K G  + A+ LL  +E+     ++  Y+ ++ GLC 
Sbjct: 165 ILMVKSGYEPNVVVYNTLI-DGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 123 VGRWEEARKKLDQLSEKGLVPGV-----------------------------------VT 147
            GRW +A + L  + ++ + P V                                   VT
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN +INGLC  G + +A K    M  KGCFP+  ++NT+I GF
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           ++ L+       R +  +    KM   GI+ +L ++  LIH  + +  R S A+++L  +
Sbjct: 74  FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH-CFCRCSRLSFALSVLGKM 132

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  YE +I  +  ++ G C V R  +A   +  + + G  P VV YN LI+GLCK G +
Sbjct: 133 MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGEL 192

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             A +LL +M++KG   D  ++NT++ G         A+  L+  M
Sbjct: 193 NIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEA-VELF 63
           F  N   YG+ ++G+C++ ++D A   + K    +V ++++LING  +  RL EA   + 
Sbjct: 318 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 377

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M++ G   ++ TYN LI    +K    SA  L+  ++    E N+  Y+++ID  C+ 
Sbjct: 378 ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 437

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEAR  LD++S KGL    V YN LI+ LCK   + +A  +   M  KGC PD  +F
Sbjct: 438 GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 497

Query: 184 NTVIQGFLVKNETDRA 199
           N++I G    N+ + A
Sbjct: 498 NSLIFGLCKVNKFEEA 513



 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+ +CK  ++  A+        KG   D+F ++SLI GLC  N+ +EA+ L+  M+
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+ A  +TYN LIH    +     A+ L+  +      L+   Y+ +I  LCR G  E
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 581

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +     + +  KGL P  ++ NILINGLC+ G I  A + L  M  +G  PD  ++N++I
Sbjct: 582 KGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 641

Query: 188 QGFLVKNETDRASSFLKK 205
            G         A +   K
Sbjct: 642 NGLCKTGRAQEALNLFDK 659



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           D+T      N  VY   I+ + K+  ++  +K        G   DV  ++  I+GLC   
Sbjct: 242 DMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKML 301

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA +L D+M+ +G T    TY  L+H          A  LL  +       N+ +++
Sbjct: 302 RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNP----NVVLFN 357

Query: 115 LVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +I+G    GR +EA+  + + +   G  P + TYN LI GLCKKG ++ A +L+ +M+ 
Sbjct: 358 TLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQI 417

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC P+  ++  +I  F  +   + A + L +
Sbjct: 418 KGCEPNVITYTILIDRFCKEGRLEEARNVLDE 449



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 89/167 (53%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++  + +G  LD   Y+ LI  LC    +++ + LF+ M+++G+    ++ N LI+ 
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A+  L+ +       +I  Y+ +I+GLC+ GR +EA    D+L  +G+ P 
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +TYN LI+  CK+GM  +A  LL +  + G  P+  ++  ++  F+
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFI 715



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KGI   V+ +  ++  LC  N +  A  L   M   G     + Y  LIH    K GR
Sbjct: 209 LSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA-LXKVGR 267

Query: 92  FSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + +  L         + ++  ++  I GLC++ R  EA K +D++  +G  P   TY +
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L++GLC+ G + EA  LL ++      P+   FNT+I G++ +   D A + + ++M
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESM 380



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +++ L   N  K    +F +M+++GI+  + T+  ++          SA ALL+ + 
Sbjct: 185 YNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT 244

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R     N  VY  +I  L +VGR  E  K L+++   G +P V T+N  I+GLCK   I 
Sbjct: 245 RHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH 304

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA KL+ +M  +G  P+S ++  ++ G     + D A   L K
Sbjct: 305 EAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 347


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 102/176 (57%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S  + G+  +V  Y+++I+GLC    + EA+ LF++M  + +  ++VTY  LI    +  
Sbjct: 333 SMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNH 392

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A+AL + ++    + ++  Y++++D LC+ GR E A++   +L  KG    V TYN
Sbjct: 393 HLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYN 452

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++INGLCK  +  EA  L  +M+ KGC PD+ +F T+I     K+E D+A   L++
Sbjct: 453 VMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILRE 508



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T+   K +   YG  ++G   + E+  A        + G+  +V  Y+ +I+GLC    
Sbjct: 532 MTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKT 591

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+ LF++M  + +   +VTY  LI    +      A+ALL+ ++    + ++  Y++
Sbjct: 592 VDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTI 651

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+ GR E A++   +L  KG    V  Y  +IN LCK G+  EA  L  +M++KG
Sbjct: 652 LLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG 711

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C PD+ +F+ +I     K+E D+A   L
Sbjct: 712 CMPDAVTFDIIIWALFEKDENDKAEKIL 739



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L     K +  +Y   I+ +CK + +  A       I KGI  +V  Y++L+ G C    
Sbjct: 194 LEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGH 253

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYS 114
           LKEA  L ++M  + I  ++ T+N LI D   K+G+  A  + L  + +   + ++  Y+
Sbjct: 254 LKEAFSLLNEMKLKNINPDVCTFNTLI-DALGKEGKMKAAKIVLAVMMKACIKPDVVTYN 312

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG   + + + A+     +++ G+ P V TY  +I+GLCK+ M+ EA  L  +MK K
Sbjct: 313 SLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYK 372

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++ ++I G    +  +RA +  KK
Sbjct: 373 NMIPDIVTYTSLIDGLCKNHHLERAIALCKK 403



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 32/230 (13%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           + + +     N   Y   I+G+CK + +D A+        K +  D+  Y+SLI+GLC  
Sbjct: 332 YSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKN 391

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
           + L+ A+ L  KM  QGI  ++ +Y  L+ D   K GR  +A    Q L    Y LN++ 
Sbjct: 392 HHLERAIALCKKMKEQGIQPDVYSYTILL-DALCKGGRLENAKEFFQRLLVKGYHLNVQT 450

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL---- 168
           Y+++I+GLC+   + EA     ++  KG +P  +T+  +I  L +K    +A+K+L    
Sbjct: 451 YNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMI 510

Query: 169 ---------VQMKE---------KGCF-PDSTSFNTVIQGFLVKNETDRA 199
                    V++KE         K C  PD  ++ T++ G+ + NE   A
Sbjct: 511 ARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHA 560



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 9/183 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           + + +     N   Y I I+G+CK + +D A+        K +  ++  Y+SLI+ LC  
Sbjct: 565 YSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKN 624

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           + L+ A+ L  +M   GI  ++ +Y  L+ D   K GR   A  + Q L    Y LN++V
Sbjct: 625 HHLERAIALLKEMKEHGIQPDVYSYTILL-DGLCKSGRLEGAKEIFQRLLVKGYHLNVQV 683

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I+ LC+ G ++EA     ++ +KG +P  VT++I+I  L +K    +A+K+L +M 
Sbjct: 684 YTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMI 743

Query: 173 EKG 175
            +G
Sbjct: 744 ARG 746



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +N  C +  I  A       +K+G   +    ++LI GLC    +K+A+   D++VAQ
Sbjct: 103 ILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQ 162

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G     V+Y  LI +   K G   A+A LL+ LE    + ++ +Y+ +I  LC+     +
Sbjct: 163 GFQLNQVSYRTLI-NGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGD 221

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A     ++  KG+ P VVTYN L+ G C  G + EA  LL +MK K   PD  +FNT+I 
Sbjct: 222 ACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLID 281

Query: 189 GF 190
             
Sbjct: 282 AL 283



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 65/253 (25%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + EQ  + + + Y I ++ +CK   +++A       + KG  L+V  Y+ +INGLC  + 
Sbjct: 404 MKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADL 463

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI--------HDNWEKQGR---------------- 91
             EA++L  KM  +G   + +T+  +I        +D  EK  R                
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLK 523

Query: 92  -----FSAMA-------------------LLQTLERDKYEL----------NIEVYSLVI 117
                 + M                    L+  L+  KY            N++ Y+++I
Sbjct: 524 EAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMI 583

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+    +EA    +++  K + P +VTY  LI+ LCK   +  A  LL +MKE G  
Sbjct: 584 DGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQ 643

Query: 178 PDSTSFNTVIQGF 190
           PD  S+  ++ G 
Sbjct: 644 PDVYSYTILLDGL 656



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++  L     +        +    G  P + T NIL+N  C    I  A  +L  + 
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANIL 125

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           ++G  P++ + NT+I+G   + E  +A  F
Sbjct: 126 KRGYHPNAITLNTLIKGLCFRGEIKKALYF 155


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N   Y + ING+C+   ++E+   +    ++G  LD   Y++LI G C      +A+
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M+  G+T  ++TY  LIH   +      AM  L  +       N   Y+ ++DG 
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G   EA + L ++++ G  P VVTYN LING C  G + +A  +L  MKEKG  PD 
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S++TV+ GF    + D A
Sbjct: 451 VSYSTVLSGFCRSYDVDEA 469



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E +   N   Y I I G C    ID A+        KG   +V  Y++LI+G C   
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVY 113
           ++ +  +L   M  +G+   L++YN +I +   ++GR   ++ + T + R  Y L+   Y
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVI-NGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+ G + +A     ++   GL P V+TY  LI+ +CK G +  A + L QM+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P+  ++ T++ GF  K   + A   L++
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405



 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)

Query: 1   FDLTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           F LTE   +G   +   Y   I G CK      A+       + G+   V  Y+SLI+ +
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELN 109
           C    +  A+E  D+M  +G+     TY  L+ D + ++G  + A  +L+ +  + +  +
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV-DGFSQKGYMNEAYRVLREMNDNGFSPS 414

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I+G C  G+ E+A   L+ + EKGL P VV+Y+ +++G C+   + EA ++  
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M EKG  PD+ +++++IQGF  +  T  A
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+    +   Y   ++G C+  ++D A++       KGI  D   YSSLI G C   
Sbjct: 440 DMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQR 499

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R KEA +L+++M+  G+  +  TY  LI+    +     A+ L   +       ++  YS
Sbjct: 500 RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYS 559

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+GL +  R  EA++ L +L  +  VP  VTY+ LI                G C KG
Sbjct: 560 VLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKG 619

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M+ EAD++   M  K   PD T++N +I G     +  +A +  K+
Sbjct: 620 MMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 106/194 (54%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +  F  +   Y   ING C   +++ AI       +KG+  DV  YS++++G C   
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ +  +MV +GI  + +TY+ LI    E++    A  L + + R     +   Y+
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G  E+A +  +++ EKG++P VVTY++LINGL K+    EA +LL+++  +
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584

Query: 175 GCFPDSTSFNTVIQ 188
              P   +++T+I+
Sbjct: 585 ESVPSDVTYHTLIE 598



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ MCK   ++ A++       +G+C +   Y++L++G      + EA  +  +M
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G +  +VTYN LI+ +        A+A+L+ ++      ++  YS V+ G CR    
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +   ++ EKG+ P  +TY+ LI G C++    EA  L  +M   G  PD  ++  +
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526

Query: 187 IQGFLVKNETDRA 199
           I  + ++ + ++A
Sbjct: 527 INAYCMEGDLEKA 539



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE++     G    V  Y++LING C   ++++A+ + + M  +G++ ++V+Y+ ++  
Sbjct: 403 LREMND---NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A+ + + +     + +   YS +I G C   R +EA    +++   GL P 
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             TY  LIN  C +G + +A +L  +M EKG  PD  +++ +I G   ++ T  A   L 
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 205 K 205
           K
Sbjct: 580 K 580



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 22/196 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K +   Y   I G C+ R    A       ++ G+  D F Y++LIN  C   
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYELNIEVY 113
            L++A++L ++MV +G+  ++VTY+ LI+  N + + R +   LL+    +    ++  +
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYH 594

Query: 114 SLV--------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           +L+              I G C  G   EA +  + +  K   P    YNI+I+G C+ G
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAG 654

Query: 160 MIMEADKLLVQMKEKG 175
            I +A  L  +M + G
Sbjct: 655 DIRKAYTLYKEMVKSG 670



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEKGLVPGVVTYNILI 152
           A++++   +   +   +  Y+ V+D   R  R    A     ++ E  + P V TYNILI
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G C  G I  A  L  +M+ KGC P+  ++NT+I G+
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  C   +++ A       ++KG+  DV  YS LINGL   +R +EA  L  K+
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

Query: 67  VAQGITAELVTYNPLIHD--NWEKQGRFS-------------AMALLQTLERDKYELNIE 111
             +      VTY+ LI +  N E +   S             A  + +++    ++ +  
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I G CR G   +A     ++ + G +   VT   L+  L K+G + E + ++V +
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G    V  Y++L +GLC   R  EAVE+ D M A+G     +TY+ ++ D   K GR
Sbjct: 340 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV-DGLCKAGR 398

Query: 92  FS-AMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
            + A+   + + RD+    ++  YS +IDGLC+ G+ +EA + L+++   G +P VVT++
Sbjct: 399 VTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFS 458

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ILINGLC  G I    +L   M E+GC PD  ++ T++      +  D A    ++
Sbjct: 459 ILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQ 514



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK R++D AI        K I  DV  Y +LI+GL    R+KEA +LF++  A+G 
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 61

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEA 129
              +VTYN +I D   K GR  +A+ L   +     +   +  YS +IDGLCR    ++ 
Sbjct: 62  HPTVVTYNTMI-DGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L++++ +G  P  VTYN L+N L  +G   EA  LL QM   GC P+  +F  +I+G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 190 FLVKNETDRA 199
              + E + A
Sbjct: 181 LCKEGEIEAA 190



 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 11/200 (5%)

Query: 14  VYGIRINGMCKIREIDSA---------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            +G+ I G+CK  EI++A         I+ G+  DV  ++S+++GLC   R+ +A  +F 
Sbjct: 173 TFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFK 232

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + + +G    +VTY+ LI D   K  +   A+ LL  +       N   YS V+DGL +V
Sbjct: 233 RALERGCRPNVVTYSTLI-DGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV 291

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR E+A   L Q+ + G +P  VTYN LI+G  K+  + EA  LL +M E G  P   ++
Sbjct: 292 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTY 351

Query: 184 NTVIQGFLVKNETDRASSFL 203
            T+  G       D A   L
Sbjct: 352 TTLCHGLCRSGRFDEAVEIL 371



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 113/220 (51%), Gaps = 16/220 (7%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMCKIREI--------DSAIKKGICLDVFVYSSLIN 48
           +DL E+      H     Y   I+G+CK   I        D AI  G    V  YS+LI+
Sbjct: 50  YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLID 109

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYE 107
           GLC  + + +  +L ++M  +G     VTYN L++     QGR   A +LL+ +  +   
Sbjct: 110 GLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVN-ALLGQGRSKEAFSLLEQMAANGCP 168

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQ--LSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
             +  + L+I GLC+ G  E A + +D+  + E GL P V+T+N +++GLCK+  I++A 
Sbjct: 169 PELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAH 228

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +  +  E+GC P+  +++T+I G     + D A   L K
Sbjct: 229 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 268



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 112/209 (53%), Gaps = 8/209 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E+  + N   Y   I+G+ K+ ++D A       ++ G   +   YS++++GL    R++
Sbjct: 236 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 295

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +AV +  +M   G   + VTYN LI   +++Q    A+ LL+ +    +  ++  Y+ + 
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 355

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGC 176
            GLCR GR++EA + LD ++ +G  P  +TY+ +++GLCK G + EA     +M +++  
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 415

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P   +++ +I G     + D A  FL++
Sbjct: 416 APHVIAYSALIDGLCKAGKIDEAYEFLER 444



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 10/207 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E  F  +   Y    +G+C+    D A++       +G   +   YSS+++GLC   
Sbjct: 338 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 397

Query: 55  RLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           R+ EA+  F+KM    + A  ++ Y+ LI D   K G+   A   L+ + R     ++  
Sbjct: 398 RVTEALGYFEKMARDEVVAPHVIAYSALI-DGLCKAGKIDEAYEFLERMIRAGRIPDVVT 456

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +S++I+GLC  GR +   +    ++E+G VP +VTY  L++ LC+   + EA  L  QM+
Sbjct: 457 FSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMR 516

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
             G  PD ++  T+I G L  N  + A
Sbjct: 517 SDGLSPDRSTRRTMIHGLLEVNRDEDA 543



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+     Y   I+G+C+  E+D   K       +G   +   Y++L+N L    R KEA 
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAF 156

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV--YSLVI 117
            L ++M A G   EL+T+  LI     K+G   +A  ++  +   +  L+ +V  ++ V+
Sbjct: 157 SLLEQMAANGCPPELITFG-LIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+  R  +A     +  E+G  P VVTY+ LI+GL K   + EA +LL +M E GC 
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 275

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++ +++TV+ G L     + A   L++
Sbjct: 276 ANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+  + ++A     Q+ +K + P VVTY  LI+GL K+  + EA  L  + + KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 176 CFPDSTSFNTVIQGF 190
           C P   ++NT+I G 
Sbjct: 61  CHPTVVTYNTMIDGL 75


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 9/200 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I+GMCK       ++  D   ++ I  +   Y+ +I+GLC   +   A  LF
Sbjct: 195 NIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF 254

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M   G   + VTYN L+H  + K GR   A+ LL+  E+D+Y L+ + YS +IDGL R
Sbjct: 255 IAMKDHGCIPDSVTYNALLH-GFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFR 313

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R+E+A+    +++E  + P V+ Y I++ GL K G   +A +LL +M E+G  PD+  
Sbjct: 314 ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHC 373

Query: 183 FNTVIQGFLVKNETDRASSF 202
           +N +I+G+      D A S 
Sbjct: 374 YNALIKGYCDLGLLDEAKSL 393



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 1/189 (0%)

Query: 17  IRINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           I+ NG     ++   IK+ G  +    ++ LI      + +++AVE F+ M       ++
Sbjct: 102 IKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDV 161

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            TYN ++H    K+    A+ +   + +     NI  +S++IDG+C+ G+ + A +  D+
Sbjct: 162 FTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDE 221

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++++ ++P  +TY I+I+GLC+      A +L + MK+ GC PDS ++N ++ GF     
Sbjct: 222 MTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGR 281

Query: 196 TDRASSFLK 204
            D A   LK
Sbjct: 282 VDEALGLLK 290



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 22/225 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICLD-VFVYSSLINGLCTFN 54
           ++TE+    + H Y   I G C +  +D A      I K  C      Y+ LI G+C   
Sbjct: 361 EMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSG 420

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE------ 107
            + +A ++F++M   G    +VT+N LI D + K G    A  L   +E  +        
Sbjct: 421 LVGDAQQIFNEMEKHGCYPSVVTFNALI-DGFCKAGNIEKAQLLFYKMEIGRNPSLFLRL 479

Query: 108 -------LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
                  L+      +++ LC  G   +A   L QL++ G  P ++TYNILI+G CK G 
Sbjct: 480 SQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGN 539

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I  A KL  +++ KG  PDS ++ T+I G L  N  + A + L +
Sbjct: 540 INGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQ 584



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 42/241 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           LT+  F  N   Y I I+G CK   I+ A K       KG+  D   Y +LINGL + NR
Sbjct: 515 LTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANR 574

Query: 56  LKEAVELFDKMVAQGITAELVTYNPL---------------------------------- 81
            ++A  + D+++  G T     Y                                     
Sbjct: 575 EEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKS 634

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           + +N+EK     A+  L  ++    +  +  Y++ + GLC+ GR EEA K    L E  +
Sbjct: 635 VEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNV 694

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           +    +   LI  L K G +  A ++ +   +KG        N +++  L+++E  R  +
Sbjct: 695 LVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKS-LLRSEDKRNRA 753

Query: 202 F 202
           F
Sbjct: 754 F 754



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 35/168 (20%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD     +++  LC    + +A  +  ++   G    ++TYN LIH              
Sbjct: 487 LDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIH-------------- 532

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
                                G C+ G    A K   +L  KGL P  VTY  LINGL  
Sbjct: 533 ---------------------GFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLS 571

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                +A  +L Q+ + GC P +  + + +     +N+   A S   K
Sbjct: 572 ANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLK 619


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEA-VELF 63
           F  N   YG+ ++G+C++ ++D A   + K    +V ++++LING  +  RL EA   + 
Sbjct: 336 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 395

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M++ G   ++ TYN LI    +K    SA  L+  ++    E N+  Y+++ID  C+ 
Sbjct: 396 ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 455

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEAR  LD++S KGL    V YN LI+ LCK   + +A  +   M  KGC PD  +F
Sbjct: 456 GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 515

Query: 184 NTVIQGFLVKNETDRA 199
           N++I G    N+ + A
Sbjct: 516 NSLIFGLCKVNKFEEA 531



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+ +CK  ++  A+        KG   D+F ++SLI GLC  N+ +EA+ L+  M+
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+ A  +TYN LIH    +     A+ L+  +      L+   Y+ +I  LCR G  E
Sbjct: 540 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 599

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +     + +  KGL P  ++ NILINGLC+ G I  A + L  M  +G  PD  ++N++I
Sbjct: 600 KGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 659

Query: 188 QGFLVKNETDRASSFLKK 205
            G         A +   K
Sbjct: 660 NGLCKTGRAQEALNLFDK 677



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           D+T      N  VY   I+ + K+  ++  +K        G   DV  ++  I+GLC   
Sbjct: 260 DMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKML 319

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA +L D+M+ +G T    TY  L+H          A  LL  +       N+ +++
Sbjct: 320 RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNP----NVVLFN 375

Query: 115 LVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +I+G    GR +EA+  + + +   G  P + TYN LI GLCKKG ++ A +L+ +M+ 
Sbjct: 376 TLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQI 435

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC P+  ++  +I  F  +   + A + L +
Sbjct: 436 KGCEPNVITYTILIDRFCKEGRLEEARNVLDE 467



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 89/167 (53%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++  + +G  LD   Y+ LI  LC    +++ + LF+ M+++G+    ++ N LI+ 
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A+  L+ +       +I  Y+ +I+GLC+ GR +EA    D+L  +G+ P 
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +TYN LI+  CK+GM  +A  LL +  + G  P+  ++  ++  F+
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFI 733



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KGI   V+ +  ++  LC  N +  A  L   M   G     + Y  LIH    K GR
Sbjct: 227 LSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA-LSKVGR 285

Query: 92  FSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + +  L         + ++  ++  I GLC++ R  EA K +D++  +G  P   TY +
Sbjct: 286 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 345

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L++GLC+ G + EA  LL ++      P+   FNT+I G++ +   D A + + ++M
Sbjct: 346 LMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESM 398



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +++ L   N  K    +F +M+++GI+  + T+  ++          SA ALL+ + 
Sbjct: 203 YNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT 262

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R     N  VY  +I  L +VGR  E  K L+++   G +P V T+N  I+GLCK   I 
Sbjct: 263 RHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH 322

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA KL+ +M  +G  P+S ++  ++ G     + D A   L K
Sbjct: 323 EAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 365


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK+  + SA        K+ I  D   Y+++I GLC   R+ EA +LF +M
Sbjct: 360 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 419

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V + +  + VTY  LI D + K+G+   A +L   + +     NI  Y+ + DGLC+ G 
Sbjct: 420 VCKRLEPDEVTYTALI-DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A + L ++  KGL   + TYN L+NGLCK G I +A KL+  M+  G  PD+ ++ T
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++  +    E  RA   L++
Sbjct: 539 LMDAYCKSREMVRAHELLRQ 558



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 45/249 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREIDSAIKKGIC----LDVFVYSSLINGLCTFN 54
           ++ +++   +F  Y   I G+C   ++ E D    + +C     D   Y++LI+G C   
Sbjct: 383 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG 442

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           ++KEA  L ++M+  G+T  +VTY  L  D   K G   +A  LL  + R   ELNI  Y
Sbjct: 443 KMKEAFSLHNQMLQMGLTPNIVTYTALA-DGLCKCGEVDTANELLHEMCRKGLELNIYTY 501

Query: 114 SLVIDGLCRVGRWEEARKK-----------------------------------LDQLSE 138
           + +++GLC+ G  ++A K                                    L Q+ +
Sbjct: 502 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 561

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           + L P VVT+N+L+NG C  GM+ + +KLL  M EKG  P++T++N++I+ + ++N   R
Sbjct: 562 RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM-R 620

Query: 199 ASSFLKKNM 207
           A++ + + M
Sbjct: 621 ATTEIYRGM 629



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y    +G+CK  E+D+A        +KG+ L+++ Y+SL+NGLC    + +AV+L 
Sbjct: 462 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 521

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G   + VTY  L+    + +    A  LL+ +   + +  +  ++++++G C  
Sbjct: 522 KDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMS 581

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+  K L  + EKG++P   TYN LI   C +  +    ++   M  KG  PD  ++
Sbjct: 582 GMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTY 641

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           N +I+G   K    + + FL ++M
Sbjct: 642 NILIKGH-CKARNMKEAWFLHRDM 664



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING C++ E+   +K       KG+  + + Y+ +I  LC   ++ EA  +  +M+
Sbjct: 291 YSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI 350

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++GI  + V Y  LI D + K G  S A  L   +++ K   +   Y+ VI GLC+ GR 
Sbjct: 351 SEGIAPDGVIYTTLI-DGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV 409

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++  K L P  VTY  LI+G CK+G + EA  L  QM + G  P+  ++  +
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 187 IQGFLVKNETDRASSFLKK 205
             G     E D A+  L +
Sbjct: 470 ADGLCKCGEVDTANELLHE 488



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+C +   Y+ + + LC   R+ EA +L  +M  +G   ++++Y+ +I+   +       
Sbjct: 248 GVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRV 307

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L++ ++    + N   Y+ VI  LC+ G+  EA + L ++  +G+ P  V Y  LI+G
Sbjct: 308 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 367

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK G +  A +L  +M+++   PD  ++  VI G 
Sbjct: 368 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGL 403



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +K A+++F +    G+     +YN + H   +      A  LL  +E      ++  YS 
Sbjct: 234 IKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYST 293

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G C+VG  +   K ++++  KGL P   TYN +I  LCK G + EA+++L +M  +G
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 176 CFPDSTSFNTVIQGF 190
             PD   + T+I GF
Sbjct: 354 IAPDGVIYTTLIDGF 368



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-HDNWEKQGRFSAMAL 97
           D  V+      L     L EA +LFDKM+  G+   + + N  I H + +  G   A+ +
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKV 240

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
                      N   Y+++   LC++GR  EA + L Q+  +G +P V++Y+ +ING C+
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQ 300

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            G +    KL+ +M+ KG  P+  ++N VI
Sbjct: 301 VGELQRVLKLIEEMQIKGLKPNPYTYNGVI 330



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +NG C    ++         ++KGI  +   Y+SLI   C  N ++   E++  M
Sbjct: 570 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 629

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A+G+  +  TYN LI  + + +    A  L + +    + L +  Y+ +I G  +  ++
Sbjct: 630 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKF 689

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
            EAR+  +Q+  +GLV     YNI  +
Sbjct: 690 LEARELFEQMRREGLVADREIYNIFAD 716



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K   +  E G+     +YNI+ + LC+ G ++EA +LL+QM+ +GC PD  S++TVI 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 189 GFLVKNETDR 198
           G+    E  R
Sbjct: 297 GYCQVGELQR 306


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 8/195 (4%)

Query: 17  IRINGMCKIR-EIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           + I  +CK    ID+A        K+G   D + Y +LINGLC   +  EA ELF +M  
Sbjct: 160 VLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDT 219

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G +  +VTY+ L+H   +      AM L   +++   E N+  YS ++DGLC+ G   E
Sbjct: 220 KGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + L+ +  K   P +VTY+ LINGLCK+G + EA + L +MK +G  PD+  +  +I 
Sbjct: 280 AMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIIN 339

Query: 189 GFLVKNETDRASSFL 203
           GF    +   A+++L
Sbjct: 340 GFCNIRKFQEAATYL 354



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 20/204 (9%)

Query: 13  HVYGIRINGMCKI----------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           + YG  ING+CK+          +E+D+   KG    V  YS L++GLC    + EA+ L
Sbjct: 192 YTYGTLINGLCKLGKTFEAKELFKEMDT---KGCSPSVVTYSCLMHGLCQAGNVDEAMGL 248

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           FDKM  + I   + TY+ L+    +  G   AM LL+ + R +++ N+  YS +I+GLC+
Sbjct: 249 FDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCK 308

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+  EA + LD++  +GL P    Y  +ING C      EA   L +M      P+  +
Sbjct: 309 EGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVT 368

Query: 183 F-------NTVIQGFLVKNETDRA 199
           +       N V+QG       +R+
Sbjct: 369 WSLHVKLNNMVVQGLCTNGNLNRS 392



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           FD + ++  + N   Y   ++G+CK       +  ++  ++K    ++  YS+LINGLC 
Sbjct: 249 FDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCK 308

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQ-TLERDK 105
             +L EAVE  D+M  QG+  +   Y  +I+         E       M L Q +  R  
Sbjct: 309 EGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVT 368

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           + L++++ ++V+ GLC  G    + +    +  +G+     T++ L+   CKKG + +A 
Sbjct: 369 WSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAA 428

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++  +M   GC PD   ++ V+ GF
Sbjct: 429 RIFDEMVLDGCVPDHGIWSAVVGGF 453



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 136 LSEKGLVPGVVTYNILINGLCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           + E G+   VV+ N+LI  LCK  G I  A ++  +M ++GC PDS ++ T+I G     
Sbjct: 146 MREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLG 205

Query: 195 ETDRASSFLKK 205
           +T  A    K+
Sbjct: 206 KTFEAKELFKE 216


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 10/201 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI +++ A+       + G   +V  YS+L+ GL    ++ +A +LF  M 
Sbjct: 205 YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMK 264

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A GI+ +   Y   +    +    F AM L   L+   ++L+ E YS +IDGLC+ G+ E
Sbjct: 265 ASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVE 324

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL---LVQMKEKGCFPDSTSFN 184
            A +   QLS++GL P VVT NI+I+G C+   + +A+ L   + +M+E GC PD  ++N
Sbjct: 325 IAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYN 384

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+++GF   N+ +   + L K
Sbjct: 385 TLLRGFCESNKLEEVVNLLHK 405



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 9/183 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+G+CK+   D A +       +G+  +V  YSSL++G C   +L+E+  LF++MV Q
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 70  GITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G+   LV +N LI D   K+G+   A  LL+   +    L++  Y+ +IDG C++G    
Sbjct: 127 GVQPNLVQFNVLI-DILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSS 185

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           ARK    +  KG     ++Y ILING CK   + EA  L  +M + G  P+  +++T++ 
Sbjct: 186 ARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLT 245

Query: 189 GFL 191
           G L
Sbjct: 246 GLL 248



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 18/153 (11%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D+F  + L N LC  NR+ E +     ++ +G   ++VTYN LI     +  R S 
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLI-KGLCRVHRISV 63

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                               ++IDGLC+VG  +EA++  +++  +G++P V++Y+ L++G
Sbjct: 64  AT-----------------CIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHG 106

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            C  G + E+ +L  +M ++G  P+   FN +I
Sbjct: 107 FCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLI 139



 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L    FK +F  Y   I+G+CK  +++ A        ++G+  +V   + +I+G C   
Sbjct: 297 ELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVE 356

Query: 55  RLKEAVELF---DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           ++ +A  LF   +KM   G T +++TYN L+    E       + LL  +
Sbjct: 357 QVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 97/158 (61%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            ++ +I  LC    L++A++L +KM   G TA +VTYN +I+   E++    AM LL  +
Sbjct: 149 TFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKM 208

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +    + +I  Y+ ++ GLC   RW +A + +D +++ G +P  VT+N LI  LC+KG++
Sbjct: 209 KSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLM 268

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++A ++  QM +KGC P+S +++T+I G     + D+A
Sbjct: 269 VDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQA 306



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N + Y   I+ +C   ++R+    +D  + +G   DV  Y+ L+   C     ++A+E
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L D M A+G T   VTYN L+     +     A+ LL+ L     + +   Y+ V+ GLC
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
              RW +A + + ++  +   P   T+N++I  LC+KG++ +A +LL +M + GC  +  
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N +I G   +   D A   L K
Sbjct: 184 TYNAIINGLCEQRNVDGAMGLLSK 207



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 8/190 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ++GMC   ++D A++        G       Y++++ GLC+  R  +A EL 
Sbjct: 76  NNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELV 135

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +       T+N +I+    K     A+ LL+ + +     NI  Y+ +I+GLC  
Sbjct: 136 TEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 195

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A   L ++   G  P +VTYN L+ GLC     ++A++L+  M + GC PD+ +F
Sbjct: 196 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTF 255

Query: 184 NTVIQGFLVK 193
           NT+I GFL +
Sbjct: 256 NTLI-GFLCQ 264



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I +   CK R        ID    +G   +   Y+ L++G+C    + +A+EL   +
Sbjct: 44  TYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNL 103

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + G     V YN ++      +    A  L+  + R+    N   +++VI  LCR G  
Sbjct: 104 PSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLL 163

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + L+++S+ G    +VTYN +INGLC++  +  A  LL +MK  GC PD  ++NT+
Sbjct: 164 QQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 223

Query: 187 IQGF 190
           ++G 
Sbjct: 224 LKGL 227



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 41/244 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +++     N   Y   ING+C+ R +D A+         G   D+  Y++L+ GLC+  R
Sbjct: 173 MSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAR 232

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A EL D M   G   + VT+N LI    +K     A+ + + +       N   YS 
Sbjct: 233 WVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYST 292

Query: 116 VIDGLCRVGRW----------------------------------EEARKKLDQLSEKGL 141
           +I GL +  +                                   EEA + + +L + G+
Sbjct: 293 IISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGI 352

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P  V YN ++ GLC+ G    A  ++  M   GC PD  ++  +I+G   +   + A  
Sbjct: 353 SPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARE 412

Query: 202 FLKK 205
            L K
Sbjct: 413 LLIK 416



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +   YS++I+GL    +L +A+ELF++M  +G   + + Y  L     +      
Sbjct: 281 KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEE 339

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+  ++ L+      +  +Y+ ++ GLCR G+ E A   +  +   G +P  +TY ILI 
Sbjct: 340 AIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIE 399

Query: 154 GLCKKGMIMEADKLLVQM 171
           GL  +G + EA +LL+++
Sbjct: 400 GLAYEGYLNEARELLIKL 417


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI I+G+CK  +   A+        +GI  +  +YS +++GLC   ++ +A  LF KM
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKM 259

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G   +L+TYN L+ + + K G    A  LLQ L +D + L +  Y  +I+GL R  R
Sbjct: 260 RASGCNRDLITYNVLL-NGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARR 318

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +EEA     ++  + + P V+ Y I+I GL ++G + EA  LL +M E+G  PD+  +N 
Sbjct: 319 YEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNA 378

Query: 186 VIQGFLVKNETDRASSF 202
           +I+GF      D A S 
Sbjct: 379 LIKGFCDMGYLDEAESL 395



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + +NG CK   +D A        K G  L V  Y  LINGL    R +EA   + KM
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + + I  +++ Y  +I     ++GR + A+ LL  +       +   Y+ +I G C +G 
Sbjct: 330 LRENIKPDVMLYTIMIR-GLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGY 388

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA     ++S+    P   TY+ILI G+CK G+I +A  +  +M++ GC P   +FN+
Sbjct: 389 LDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNS 448

Query: 186 VIQGFLVKNETDRA 199
           +I G    N  + A
Sbjct: 449 LINGLCKANRLEEA 462



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 29/187 (15%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N H Y I I GMCK   I+ A      ++K  CL  V  ++SLINGLC  NRL+EA  LF
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M       E+V              R  ++ L  +   DK   +I    ++++ LC  
Sbjct: 467 YQM-------EIV--------------RKPSLFLRLSQGTDKV-FDIASLQVMMERLCES 504

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   +A K L QL + G++P + TYNILING CK G I  A KL  +M+ KG  PDS ++
Sbjct: 505 GMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTY 564

Query: 184 NTVIQGF 190
            T+I G 
Sbjct: 565 GTLIDGL 571



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 84/163 (51%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            +S LI         ++AVE F  M       +L  +N ++H    K+    A+A+   +
Sbjct: 130 AFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQM 189

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +     ++  Y ++I GLC+  + ++A    D+++++G++P  + Y+I+++GLC+   I
Sbjct: 190 LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKI 249

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +A +L  +M+  GC  D  ++N ++ GF      D A + L+
Sbjct: 250 FDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQ 292


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 111/199 (55%), Gaps = 4/199 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVEL-F 63
           F  +   YG  ++G+C++ ++D A   + K    +  +Y++LI+G     R +EA +L +
Sbjct: 306 FSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLY 365

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + MV  G   +  T+N +I    +K    SA+ LL  +   ++E N+  Y+++I+G C+ 
Sbjct: 366 NNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQ 425

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA + ++ +S KGL    V YN LI  LCK G I EA +L  +M  KGC PD  +F
Sbjct: 426 GRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTF 485

Query: 184 NTVIQGFLVKNETDRASSF 202
           N++I G    ++ + A S 
Sbjct: 486 NSLINGLCKNHKMEEALSL 504



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I  +CK   I+ A++       KG   D++ ++SLINGLC  ++++EA+ L+  M 
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+ A  VTYN L+H    +     A  L+  +      L+   Y+ +I  LC+ G  E
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +     +++  KG+ P +++ NILI+GLC+ G + +A K L  M  +G  PD  ++N++I
Sbjct: 570 KGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLI 629

Query: 188 QGFLVKNETDRASSFLKK 205
            G         AS+   K
Sbjct: 630 NGLCKMGHVQEASNLFNK 647



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 12/201 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           +D+  +      + +G+ +  +C + E+DSA        K G   +  +Y +LI+ LC  
Sbjct: 194 YDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCEN 253

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           NR+ EA++L + M       ++ T+N +IH          A  LL  +    +  +   Y
Sbjct: 254 NRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTY 313

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV-QMK 172
             ++ GLCR+G+ +EAR  L+++      P  V YN LI+G    G   EA  LL   M 
Sbjct: 314 GYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMV 369

Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
             G  PD+ +FN +I G + K
Sbjct: 370 IAGYEPDAYTFNIMIDGLVKK 390



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+   V+ +  ++  LC  + +  A  L   M   G     V Y  LIH   E    
Sbjct: 197 LSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRV 256

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL+ +     E +++ ++ VI GLCR GR  EA K LD++  +G     +TY  L
Sbjct: 257 SEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYL 316

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++GLC+ G + EA  LL ++      P++  +NT+I G++     + A   L  NM
Sbjct: 317 MHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNM 368



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +RF+ N   Y I ING CK   ++ A +       KG+ L+   Y+ LI  LC   
Sbjct: 402 EMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDG 461

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++EA++LF +M  +G   ++ T+N LI+   +      A++L   +  +    N   Y+
Sbjct: 462 NIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYN 521

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++         ++A K +D++  +G     +TYN LI  LCK G + +   L  +M  K
Sbjct: 522 TLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGK 581

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G FP   S N +I G     + + A  FL+
Sbjct: 582 GIFPTIISCNILISGLCRTGKVNDALKFLQ 611



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 1/181 (0%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H + +R +     + +D  + +G  LD   Y+ LI  LC    +++ + LF++M+ +GI 
Sbjct: 525 HAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIF 584

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             +++ N LI           A+  LQ +       +I  Y+ +I+GLC++G  +EA   
Sbjct: 585 PTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNL 644

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
            ++L  +G+ P  +TYN LI+  C +GM  +A  LL +  + G  P+  +++ +I  ++V
Sbjct: 645 FNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN-YIV 703

Query: 193 K 193
           K
Sbjct: 704 K 704



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 42/149 (28%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+G+C+  +++ A+K       +G+  D+  Y+SLINGLC    ++EA  LF+K+ ++
Sbjct: 592 ILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSE 651

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI  + +TYN LI  +                                   C  G + +A
Sbjct: 652 GIRPDAITYNTLISRH-----------------------------------CHEGMFNDA 676

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKK 158
              L +  + G +P  VT++ILIN + KK
Sbjct: 677 CLLLYKGVDSGFIPNEVTWSILINYIVKK 705


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 11/197 (5%)

Query: 19  INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           +NG+C  + +D A+        + G   +V   ++L+ GLC   R++EA+EL   M   G
Sbjct: 132 LNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG 191

Query: 71  ---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
               T  +VTYN +I    + Q    A  +LQ +     +L++  YS +IDGLC+    +
Sbjct: 192 GGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVD 251

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A   L  + +KG+ P VVTYN +I+GLCK   +  A+ +L  M +KG  PD  ++NT+I
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 311

Query: 188 QGFLVKNETDRASSFLK 204
            G       DRA   L+
Sbjct: 312 DGLCKAQAVDRADGVLQ 328



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           +++     +   YGI I+ +CK+  +D A+ K       G+  +  V++SL+ GLCT +R
Sbjct: 470 MSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDR 529

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A ELF +M  QG+   +V +N ++ +   +     A  L+ ++ER     N+  Y+ 
Sbjct: 530 WEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNT 589

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C  GR +EA + LD +   GL P +++Y+ L+ G CK G I  A  L  +M  KG
Sbjct: 590 LIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKG 649

Query: 176 CFPDSTSFNTVIQGFL 191
             P + +++T++QG  
Sbjct: 650 VTPGAVTYSTILQGLF 665



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 7/186 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK + +D A       I KG+  DV  Y+++I+GLC    +  A  +   M+
Sbjct: 237 YSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMI 296

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  ++VTYN +I    + Q    A  +LQ +     + +I+ Y+ +I G    G W+
Sbjct: 297 DKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWK 356

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E  ++L+++  +GL P VVTY++L++ LCK G   EA K+   M  KG  P+ T +  ++
Sbjct: 357 EVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416

Query: 188 QGFLVK 193
            G+  +
Sbjct: 417 HGYAAR 422



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   + G CK   ID+A       ++KG+      YS+++ GL    R  EA 
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAK 674

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+  M+  G   ++ TYN +++   +      A  + Q+L       NI  ++++ID L
Sbjct: 675 ELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVL 734

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR ++A      +   GLVP VVTY I++  + ++G++ E D L + M++ GC PDS
Sbjct: 735 FKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDS 794

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
              N +I+  L + E  RA ++L K
Sbjct: 795 VMLNAIIRSLLGRGEIMRAGAYLSK 819



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 42/192 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK + +D A       I KG+ LDV  YS++I+GLC    +  A  + 
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+ +G+  ++VTYN                                    +IDGLC+ 
Sbjct: 258 QHMIDKGVKPDVVTYNT-----------------------------------IIDGLCKA 282

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A   L  + +KG+ P VVTYN +I+GLCK   +  AD +L  M +K   PD  ++
Sbjct: 283 QAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTY 342

Query: 184 NTVIQGFLVKNE 195
           N +I G+L   E
Sbjct: 343 NCLIHGYLSTGE 354



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +YGI ++G      I       D  +  GI  + ++++ ++        + EA+
Sbjct: 405 IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAM 464

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDG 119
            +F +M   G++ ++VTY  LI D   K GR     L    +  D    N  V++ ++ G
Sbjct: 465 HIFSRMSQHGLSPDVVTYGILI-DALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYG 523

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC V RWE+A +   ++ ++G+ P VV +N ++  LC +G +M A +L+  M+  G  P+
Sbjct: 524 LCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPN 583

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S+NT+I G  +   TD A+  L
Sbjct: 584 VISYNTLIGGHCLAGRTDEAAQLL 607



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K +   Y   I+G+CK + +D A       I KG+  DV  Y+++I+GLC    
Sbjct: 260 MIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA 319

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A  +   M+ + +  ++ TYN LIH           +  L+ +     + ++  YSL
Sbjct: 320 VDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSL 379

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D LC+ G+  EARK    +  KG+ P V  Y IL++G   +G I +   LL  M   G
Sbjct: 380 LLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANG 439

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++  FN V+  +  K   D A     +
Sbjct: 440 ISPNNYIFNIVLCAYAKKAMIDEAMHIFSR 469



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +++ I +    K   ID A+       + G+  DV  Y  LI+ LC   R+ +AV  F
Sbjct: 443 NNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKF 502

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+  G+T   V +N L++     D WEK     A  L   +       N+  ++ ++ 
Sbjct: 503 NQMINDGVTPNSVVFNSLVYGLCTVDRWEK-----AEELFFEMWDQGVRPNVVFFNTIMC 557

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC  G+   A++ +D +   G+ P V++YN LI G C  G   EA +LL  M   G  P
Sbjct: 558 NLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKP 617

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  S++T+++G+      D A    ++
Sbjct: 618 DLISYDTLLRGYCKTGRIDNAYCLFRE 644



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           M   R IDS  + G+  +V  Y++LI G C   R  EA +L D MV+ G+  +L++Y+ L
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 82  IHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           +   + K GR  +A  L + + R         YS ++ GL    R+ EA++    + + G
Sbjct: 626 LR-GYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
               + TYNI++NGLCK   + EA K+   +  K   P+  +F  +I
Sbjct: 685 QQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMI 731



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-----AMALLQTLER---DKYE 107
           + +A++LFD+++     A +  +N L+  N   + R S     A++L   + R   +K  
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLL--NVVARARCSSTSELAVSLFNRMARACSNKVR 87

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DK 166
            ++  YS++    CR+GR E        + + G     V  N L+NGLC    + EA D 
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LL +M E GC P+  S NT+++G   +   + A   L
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELL 184


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 9/203 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  N   + I +NG+CK  + D A+K       KGI  +  +Y+ +++GLC   R  +  
Sbjct: 197 YNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVH 256

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L + M   G   + +T N L+ D + K G+   A ALLQ  E++ Y L I+ YS +IDG
Sbjct: 257 RLLNTMKVSGCCPDSITCNALL-DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R  R++E ++   ++ + G+ P VV Y ILI G C+ GM+  A  +L  M ++G  PD
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPD 375

Query: 180 STSFNTVIQGFLVKNETDRASSF 202
           +  +N +I+GF      D+A S 
Sbjct: 376 TYCYNALIKGFCDVGLLDKARSL 398



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK+ +ID A        K+G  L +  YSSLI+GL    R  E  E   KM   GI
Sbjct: 278 LDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGI 337

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++V Y  LI    E      A+ +L  + +     +   Y+ +I G C VG  ++AR 
Sbjct: 338 EPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARS 397

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++S+    P   TY ILI G+C+ G++ EA ++  QM+  GC P   +FN +I G  
Sbjct: 398 LQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLC 457

Query: 192 VKNETDRASSFLKK 205
              E + A     K
Sbjct: 458 KAGELEEARHLFYK 471



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 89/163 (54%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            +S LI         ++AVE F KM   G   ++ TYN ++H   +K+    A+A+   +
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  Y  N   + ++++GLC+ G+ ++A K  D++++KG+ P  + Y I+++GLC+    
Sbjct: 193 LKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +  +LL  MK  GC PDS + N ++ GF    + D A + L+
Sbjct: 253 DDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 6   QRFKGNFHVYGIR-----INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           Q F+   +V GI+     I+G+ + +  D          K GI  DV +Y+ LI G C  
Sbjct: 295 QLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEV 354

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             +  A+ + + M  +G++ +   YN LI    +      A +L   + ++        Y
Sbjct: 355 GMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTY 414

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +++I G+CR G  +EAR+  +Q+   G  P ++T+N LI+GLCK G + EA  L  +M+
Sbjct: 415 TILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 78/167 (46%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+S+++ +        A+ ++++M+         T+  L++   +      A+ + 
Sbjct: 165 DVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF 224

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + +     N  +Y++++ GLC+  R ++  + L+ +   G  P  +T N L++G CK 
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G I EA  LL   +++G       ++++I G       D    + +K
Sbjct: 285 GQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRK 331



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICLDV-FVYSSLINGLCTFN 54
           D+T++    + + Y   I G C +  +D A      I K  C      Y+ LI G+C   
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNG 425

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L EA ++F++M   G +  ++T+N LI D   K G    A  L   +E  K   N  ++
Sbjct: 426 LLDEARQIFNQMENLGCSPSIMTFNALI-DGLCKAGELEEARHLFYKMEIGK---NPSLF 481

Query: 114 -------SLVID---GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                    V+D   G  RV R E+A + LDQ+ + G  P    Y  L+   C+KG +  
Sbjct: 482 LRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSV 541

Query: 164 ADKLLVQ 170
           A  L ++
Sbjct: 542 AFSLWLK 548



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 1/180 (0%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D  +K G      VY  L+   C   +L  A  L+ K +    + E  T   L  ++
Sbjct: 509 RVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLK-LAEEH 567

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +EK     A+  L  +        I  Y++ + GLC+  R EEA K    L E  +    
Sbjct: 568 FEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNP 627

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +  +LINGLCK G +  A  + +   EKG        N +++  +++++   A   L +
Sbjct: 628 PSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNR 687



 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 42/77 (54%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++LVID L +   ++   K L++L    +     T+++LI    K GM  +A +   +M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 172 KEKGCFPDSTSFNTVIQ 188
           K+ GC PD  ++N+++ 
Sbjct: 158 KDFGCKPDVFTYNSILH 174


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 9/203 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  N   + I +NG+CK  + D A+K       KGI  +  +Y+ +++GLC   R  +  
Sbjct: 197 YNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVH 256

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L + M   G   + +T N L+ D + K G+   A ALLQ  E++ Y L I+ YS +IDG
Sbjct: 257 RLLNTMKVSGCCPDSITCNALL-DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R  R++E ++   ++ + G+ P VV Y ILI G C+ GM+  A  +L  M ++G  PD
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPD 375

Query: 180 STSFNTVIQGFLVKNETDRASSF 202
           +  +N +I+GF      D+A S 
Sbjct: 376 TYCYNALIKGFCDVGLLDKARSL 398



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK+ +ID A        K+G  L +  YSSLI+GL    R  E  E   KM   GI
Sbjct: 278 LDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGI 337

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++V Y  LI    E      A+ +L  + +     +   Y+ +I G C VG  ++AR 
Sbjct: 338 EPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARS 397

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++S+    P   TY ILI G+C+ G++ EA ++  QM+  GC P   +FN +I G  
Sbjct: 398 LQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLC 457

Query: 192 VKNETDRASSFLKK 205
              E + A     K
Sbjct: 458 KAGELEEARHLFYK 471



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 89/163 (54%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            +S LI         ++AVE F KM   G   ++ TYN ++H   +K+    A+A+   +
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  Y  N   + ++++GLC+ G+ ++A K  D++++KG+ P  + Y I+++GLC+    
Sbjct: 193 LKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +  +LL  MK  GC PDS + N ++ GF    + D A + L+
Sbjct: 253 DDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 22/210 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICLDV-FVYSSLINGLCTFN 54
           D+T++    + + Y   I G C +  +D A      I K  C      Y+ LI G+C   
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNG 425

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE------ 107
            L EA ++F++M   G +  ++T+N LI D   K G    A  L   +E  K        
Sbjct: 426 LLDEARQIFNQMENLGCSPSIMTFNALI-DGLCKAGELEEARHLFYKMEIGKNPSLFLRL 484

Query: 108 -------LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
                  ++      +++ LC  G   +A K L QL++ G+VP ++TYN+LING CK   
Sbjct: 485 SQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKN 544

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I  A KL  +++ KG  PDS ++ T+I GF
Sbjct: 545 INGAFKLFRELQLKGHSPDSVTYGTLIDGF 574



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 78/167 (46%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+S+++ +        A+ ++++M+         T+  L++   +      A+ + 
Sbjct: 165 DVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF 224

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + +     N  +Y++++ GLC+  R ++  + L+ +   G  P  +T N L++G CK 
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G I EA  LL   +++G       ++++I G       D    + +K
Sbjct: 285 GQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRK 331



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 45/235 (19%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING CK + I+ A K       KG   D   Y +LI+G    +R ++A  + D+M
Sbjct: 531 TYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQM 590

Query: 67  VAQGITAELVTYNPLIHDNWE-KQGRFSA-----MALLQTLERDK--------------- 105
           V  G T     Y  L+   W  ++G+ S      +  L++L   +               
Sbjct: 591 VKNGCTPSSAVYKCLM--TWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGE 648

Query: 106 ------------YELN---IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
                       ++LN   I  Y++ + GLC+  R EEA K    L E  +     +  +
Sbjct: 649 LEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVM 708

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LINGLCK G +  A  + +   EKG        N +++  +++++   A   L +
Sbjct: 709 LINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNR 763



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D     +++  LC    + +A +L  ++   G+  +++TYN LI+   + +    A  L
Sbjct: 492 MDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKL 551

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + L+   +  +   Y  +IDG  RV R E+A + LDQ+ + G  P    Y  L+   C+
Sbjct: 552 FRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCR 611

Query: 158 KGMIMEADKLLVQ 170
           KG +  A  L ++
Sbjct: 612 KGKLSVAFSLWLK 624



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 42/77 (54%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++LVID L +   ++   K L++L    +     T+++LI    K GM  +A +   +M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 172 KEKGCFPDSTSFNTVIQ 188
           K+ GC PD  ++N+++ 
Sbjct: 158 KDFGCKPDVFTYNSILH 174


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD+   R +K N H Y I I G+C++ +    IK        G   DV +Y+++++ LC 
Sbjct: 184 FDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCK 243

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
              + EAV +F KM   GI   +VTY  LIH      GR+  A  LL  ++      ++ 
Sbjct: 244 DRLVNEAVHIFCKMKGTGILPTVVTYTSLIH-GLRNLGRWKEAFGLLNEMKGGNIMPDLV 302

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            +S++ID +C+ G   EAR  L  ++E G+ P V TYN L+NG C +  ++EA K+   M
Sbjct: 303 AFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVM 362

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             KG  PD  SF+ ++ G+      D A
Sbjct: 363 ISKGRMPDVFSFSILVNGYCKAKRIDEA 390



 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 9/178 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I +NG CK + ID A         +G+  D   Y++LI+GLC   R  EA ELF  M 
Sbjct: 374 FSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMH 433

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G    LVTY+ L+ D   KQG    AM L + +E    + ++  Y+++IDG+C+ G++
Sbjct: 434 SNGYPPNLVTYSILL-DCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKF 492

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++AR+   +LS KGL P        I+G+CK G++ EA K   QM++  C P     N
Sbjct: 493 KDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE   + +   Y   +NG C   E+  A       I KG   DVF +S L+NG C   R
Sbjct: 327 MTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKR 386

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +LFD+M  +G+  + V+YN LI    + +    A  L + +  + Y  N+  YS+
Sbjct: 387 IDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSI 446

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D L + G  ++A      +   GL P +VTYNI+I+G+CK G   +A +L  ++  KG
Sbjct: 447 LLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKG 506

Query: 176 CFPDSTSFNTVIQG 189
             P++      I G
Sbjct: 507 LQPNNWVCTPTIDG 520



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 42/181 (23%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C++  +D         IK G+  +V  +S+LING C   ++  A+ELFD MVA+
Sbjct: 131 ILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR 190

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G                                   Y+ N+  YS++I GLCRVG+  E 
Sbjct: 191 G-----------------------------------YKPNVHSYSIIIKGLCRVGKTTEV 215

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ +   G  P VV YN +++ LCK  ++ EA  +  +MK  G  P   ++ ++I G
Sbjct: 216 IKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHG 275

Query: 190 F 190
            
Sbjct: 276 L 276



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 49/226 (21%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   ++ +CK R ++ A+         GI   V  Y+SLI+GL    R KEA  L ++M
Sbjct: 233 IYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEM 292

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER--------------DKYELNIE 111
               I  +LV ++ LI D   K+G  S A  +L+T+                + Y L +E
Sbjct: 293 KGGNIMPDLVAFSVLI-DIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRME 351

Query: 112 V---------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           V                     +S++++G C+  R +EA++  D+++ +GL+P  V+YN 
Sbjct: 352 VVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNT 411

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI-----QGFL 191
           LI+GLC+    +EA++L   M   G  P+  +++ ++     QG+L
Sbjct: 412 LISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYL 457



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           TF  + +A+  F+ MV       +V +  L       +   + ++L + +E      ++ 
Sbjct: 68  TFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVL 127

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
             +++I+  CR+   +     L ++ + GL P V+T++ LING C +G I  A +L   M
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVM 187

Query: 172 KEKGCFPDSTSFNTVIQGF 190
             +G  P+  S++ +I+G 
Sbjct: 188 VARGYKPNVHSYSIIIKGL 206


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
            D+  +  + N   Y   I+G+ K   +D A         +G+     VY+SLI+GL   
Sbjct: 183 LDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRS 242

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            R   A +LF +M+++G+  + VT+  L++      GR S A  + Q        L++ +
Sbjct: 243 GRADAAAKLFREMLSKGLQPDHVTFTSLVY-GLGVAGRASEARRIFQEARDVGCALDVNL 301

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++ID LC+  R +EA +   +L E GLVP V T+N L++GLCK G I +A  LL  MK
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             GC PD T +NT+I G       + A   L
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLL 392



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 5/189 (2%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           VYG+ + G      R    A   G  LDV +Y+ LI+ LC   RL EA E+F ++   G+
Sbjct: 271 VYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL 330

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++ T+N L+ D   K GR   A  LL  ++R     ++ VY+ +IDGL + GR EEA 
Sbjct: 331 VPDVYTFNALM-DGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L ++   G  P VVTYN LI+  CK G I +A +L  ++  KG F ++ ++NT++ G 
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG-FANTVTYNTILNGL 448

Query: 191 LVKNETDRA 199
            +    D A
Sbjct: 449 CMAGRVDEA 457



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 14/191 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + ++Y + I+ +CK + +D A +        G+  DV+ +++L++GLC   R+ +A  L 
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILL 357

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M   G T ++  YN LI D   K GR   A  LL  ++   YE ++  Y+ +ID  C+
Sbjct: 358 GDMKRAGCTPDVTVYNTLI-DGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCK 416

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK---GCF-P 178
            GR E+A +  +++S KG     VTYN ++NGLC  G + EA KL   MK++   G   P
Sbjct: 417 GGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDP 475

Query: 179 DSTSFNTVIQG 189
           D  ++ T++ G
Sbjct: 476 DFVTYTTLLNG 486



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T +       VY   I+G+ +    D+A K       KG+  D   ++SL+ GL    
Sbjct: 219 EMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG 278

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  EA  +F +    G   ++  YN LI D   K  R   A  +   LE D    ++  +
Sbjct: 279 RASEARRIFQEARDVGCALDVNLYNVLI-DTLCKSKRLDEAWEIFGELEEDGLVPDVYTF 337

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DGLC+ GR  +A   L  +   G  P V  YN LI+GL K G + EA +LL++M+ 
Sbjct: 338 NALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQS 397

Query: 174 KGCFPDSTSFNTVI 187
            G  PD  ++NT+I
Sbjct: 398 LGYEPDVVTYNTLI 411



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G+  D + ++ L+N      R+    +LF++M  Q  +  ++TY+ LI    +  G  
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ +   ++      NI  Y+ +IDGL + G  ++A    ++++ +GLV   V YN LI
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL + G    A KL  +M  KG  PD  +F +++ G  V      A    ++
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 14/178 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L E     + + +   ++G+CK   I  A        + G   DV VY++LI+GL    
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R++EA +L  +M + G   ++VTYN LI ++  K GR   A+ L + +    +  N   Y
Sbjct: 384 RVEEAGQLLLEMQSLGYEPDVVTYNTLIDESC-KGGRIEDALRLFEEISAKGFA-NTVTY 441

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEK---GLV-PGVVTYNILINGLCKKGMIMEADKL 167
           + +++GLC  GR +EA K  + + ++   G++ P  VTY  L+NG  + G+   A+ L
Sbjct: 442 NTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
            L    Y+SLI+        ++A+ ++  M   G+  +  T+N L++   + +   S   
Sbjct: 86  ALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWK 145

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L + ++      N+  YS++ID +C+ G  E+A K    +  +G  P + TY  +I+GL 
Sbjct: 146 LFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLG 205

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K G + +A  L  +M  +G       +N++I G       D A+   ++
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254



 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ +E  +  L    Y+ +ID   + G  ++A      + + GL P   T+N+L+N   K
Sbjct: 77  LKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKK 136

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
              +    KL  +M+ + C P+  +++ +I
Sbjct: 137 AKRVDSVWKLFEEMQNQNCSPNVITYSILI 166


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK+  + SA        K+ I  D   Y+++I GLC   R+ EA +LF +M
Sbjct: 260 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 319

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V + +  + VTY  LI D + K+G+   A +L   + +     NI  Y+ + DGLC+ G 
Sbjct: 320 VCKRLEPDEVTYTALI-DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 378

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A + L ++  KGL   + TYN L+NGLCK G I +A KL+  M+  G  PD+ ++ T
Sbjct: 379 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 438

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++  +    E  RA   L++
Sbjct: 439 LMDAYCKSREMVRAHELLRQ 458



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 45/249 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREIDSAIKKGIC----LDVFVYSSLINGLCTFN 54
           ++ +++   +F  Y   I G+C   ++ E D    + +C     D   Y++LI+G C   
Sbjct: 283 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG 342

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           ++KEA  L ++M+  G+T  +VTY  L  D   K G   +A  LL  + R   ELNI  Y
Sbjct: 343 KMKEAFSLHNQMLQMGLTPNIVTYTALA-DGLCKCGEVDTANELLHEMCRKGLELNIYTY 401

Query: 114 SLVIDGLCRVGRWEEARKK-----------------------------------LDQLSE 138
           + +++GLC+ G  ++A K                                    L Q+ +
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 461

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           + L P VVT+N+L+NG C  GM+ + +KLL  M EKG  P++T++N++I+ + ++N   R
Sbjct: 462 RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM-R 520

Query: 199 ASSFLKKNM 207
           A++ + + M
Sbjct: 521 ATTEIYRGM 529



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y    +G+CK  E+D+A        +KG+ L+++ Y+SL+NGLC    + +AV+L 
Sbjct: 362 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 421

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G   + VTY  L+    + +    A  LL+ +   + +  +  ++++++G C  
Sbjct: 422 KDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMS 481

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+  K L  + EKG++P   TYN LI   C +  +    ++   M  KG  PD  ++
Sbjct: 482 GMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTY 541

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           N +I+G   K    + + FL ++M
Sbjct: 542 NILIKGH-CKARNMKEAWFLHRDM 564



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           I + G   ++ I+    KG+  + + Y+ +I  LC   ++ EA  +  +M+++GI  + V
Sbjct: 200 IALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGV 259

Query: 77  TYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            Y  LI D + K G  S A  L   +++ K   +   Y+ VI GLC+ GR  EA K   +
Sbjct: 260 IYTTLI-DGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 318

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +  K L P  VTY  LI+G CK+G + EA  L  QM + G  P+  ++  +  G     E
Sbjct: 319 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 378

Query: 196 TDRASSFLKK 205
            D A+  L +
Sbjct: 379 VDTANELLHE 388



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +NG C    ++         ++KGI  +   Y+SLI   C  N ++   E++  M
Sbjct: 470 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 529

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A+G+  +  TYN LI  + + +    A  L + +    + L +  Y+ +I G  +  ++
Sbjct: 530 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKF 589

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
            EAR+  +Q+  +GLV     YNI  +
Sbjct: 590 LEARELFEQMRREGLVADREIYNIFAD 616



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           D   L I   S  +DG+    + E   K ++++  KGL P   TYN +I  LCK G + E
Sbjct: 182 DSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAE 241

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A+++L +M  +G  PD   + T+I GF
Sbjct: 242 AERVLREMISEGIAPDGVIYTTLIDGF 268


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+  CK  ++D A+       + GI   V+ YSSLI+G C   +L+ A  LFD+M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A G+   +V Y  LI    ++    +A  L   +       N   ++ +I GLC   R 
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++ E  ++P  VTYN+LI G CK+G  + A +LL +M EKG  PD+ ++  +
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 187 IQGFLVKNETDRASSFL 203
           I G         A  F+
Sbjct: 572 ISGLCSTGRVSEAREFM 588



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 15/191 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +Y   I+G CK  E+ +A +       KGI  + + +++LI+GLC  NR+ EA 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF +MV   +    VTYN LI  + ++     A  LL  +       +   Y  +I GL
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575

Query: 121 CRVGRWEEARKKLDQLSE--------KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           C  GR  EAR+ ++ L          +G +P VVTY  LINGLCK G++ +A+ L  +M 
Sbjct: 576 CSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREML 635

Query: 173 EKGCFPDSTSF 183
                P+  ++
Sbjct: 636 ASNSLPNQNTY 646



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++   K G+   +FVY++LIN +C   +L EA  LF+ M  +G+    VTY+ LI D++ 
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI-DSFC 401

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K+G+   A+  L  +     +  +  YS +I G C++G+   A+   D++   GL P VV
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            Y  LI+G CK+G +  A +L  +M  KG  P++ +F  +I G    N    A+
Sbjct: 462 IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           +TE   K   + Y   I+G CK+ ++       D  I  G+  +V +Y+SLI+G C    
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A  L+ +M  +GI+    T+  LI           A  L   +       N   Y++
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-- 173
           +I+G C+ G    A + LD++ EKGLVP   TY  LI+GLC  G + EA + +  ++   
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 174 ------KGCFPDSTSFNTVIQGFLVKNETDRA 199
                 +GC P+  ++  +I G       D+A
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKA 627



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   IN MCK  ++D A         KG+  +   YS LI+  C   +L  A+    KM
Sbjct: 357 VYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM 416

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI A +  Y+ LI  + +     +A +L   +  +  + N+ +Y+ +I G C+ G  
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +   +++ KG+ P   T+  LI+GLC    + EA+KL  +M E    P+  ++N +
Sbjct: 477 HNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVL 536

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G   +  T RA   L +
Sbjct: 537 IEGHCKEGNTVRAFELLDE 555



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+ +IR+        D  +  G+  DV+VY++++  LC       A E+  +M + G 
Sbjct: 187 LNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGC 246

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + TYN  I    + Q  + A+ +   L       ++  Y  ++ GLC+V  +E   +
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEE 306

Query: 132 KLDQLSEKGLVPG-----------------------------------VVTYNILINGLC 156
            ++++ E G VP                                    +  YN LIN +C
Sbjct: 307 MMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMC 366

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K G + EA+ L   M  KG FP+  +++ +I  F  + + D A  FL K
Sbjct: 367 KDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 49/235 (20%)

Query: 14  VYGIRINGMCK----IRE---IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G CK    +R    +D  ++KG+  D + Y  LI+GLC+  R+ EA E  + +
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 67  VAQ--------GITAELVTYNPLIH----------------------------------D 84
             +        G    +VTY  LI+                                  D
Sbjct: 592 QGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLD 651

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
               +G       L  +  + +  N   Y+++I G C++GR +EA + L  + + G+ P 
Sbjct: 652 YLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++Y+ +I   C++G + EA KL   M  +G  PD+ ++N +I G  V  E  +A
Sbjct: 712 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKA 766



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G+CK + +  A++       KG+  DV  Y +L+ GLC     +   E+ ++M
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G        + L+ D   K+G   SA  L+  +++     ++ VY+ +I+ +C+ G+
Sbjct: 312 IEFGFVPSEAAVSNLV-DGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA    + +  KGL P  VTY+ILI+  CK+G +  A   L +M E G       +++
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 186 VIQG 189
           +I G
Sbjct: 431 LISG 434



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 14/204 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLING---------LCTFNRLKEAVE 61
           N   Y   ING+CKI  +D A  + +C ++   +SL N          L +   +++A++
Sbjct: 607 NVVTYTALINGLCKIGLMDKA--ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ 664

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L D ++ +G  A  VTYN LI   + K GR    A +L  +       +   YS +I   
Sbjct: 665 LHDVLL-EGFLANTVTYNILIR-GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEY 722

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G  +EA K  + +  +G+ P  V YN LI G C  G + +A +L   M  +G  P+ 
Sbjct: 723 CRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNR 782

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++N++I G  + +     + +  
Sbjct: 783 ATYNSLIHGTCLMSSVSSTADYFS 806



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   +   S ++NGL    + + A+ LFD++V+ G+  ++  Y  ++    E +    A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             ++  +E    +L++  Y++ I GLC+  R  EA +  + LS KGL   V TY  L+ G
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK       ++++ +M E G  P   + + ++ G   K     A   + K
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNK 345


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 5/204 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVEL-F 63
           F  +  + G  ++G+C++ ++D A   + K    +  +Y++LING     R +EA +L +
Sbjct: 301 FTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLY 360

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G   +  T+N +I    +K    SA+  L  + +  +E N+  Y+++IDG C+ 
Sbjct: 361 KNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQ 420

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G +EEA K ++ +S KGL    V YN LI  LCK G I +A ++  +M  KGC PD  +F
Sbjct: 421 GHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTF 480

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           N++I G L KN+    +  L ++M
Sbjct: 481 NSLIYG-LCKNDKMEEALGLYRDM 503



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 42/233 (18%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I  +CK  +I  A++       KG   D++ ++SLI GLC  ++++EA+ L+  M+
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDML 504

Query: 68  AQGITAELVTYNPLIH-------------------------DNWEKQGRFSAM------- 95
            +G+ A  VTYN LIH                         DN    G   A+       
Sbjct: 505 LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATE 564

Query: 96  ---ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
               L++ +  ++   +I   +++I+  CR G+  +A + L  + ++GL P +VTYN LI
Sbjct: 565 KCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLI 624

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           NGLCK G   EA  L   ++ KG  PD+ ++NT+I  +  +   + A   L K
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFK 677



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 2/154 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D F ++ +I+GLC    L  A+E  D+MV +G    ++TY  LI D + KQG F  A  +
Sbjct: 371 DAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILI-DGFCKQGHFEEASKV 429

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++      LN   Y+ +I  LC+ G+ ++A +   ++S KG  P + T+N LI GLCK
Sbjct: 430 VNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCK 489

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              + EA  L   M  +G   ++ ++NT+I  FL
Sbjct: 490 NDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFL 523



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 43/241 (17%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +D+  +      + +G+ +   C + E+DSA        K G   +  +Y  LI+ L   
Sbjct: 189 YDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSEN 248

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ--TLERDKYELNIE 111
           NR+ EA++L ++M   G   ++ T+N +IH    K GR    A L    L RD +  +  
Sbjct: 249 NRVNEAMKLLEEMFLMGCEPDVQTFNDVIH-GLCKAGRIHEAAKLHDRMLLRD-FTADAL 306

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEK-------------------------------- 139
           +   ++ GLCR+G+ +EAR  L ++                                   
Sbjct: 307 IQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P   T+NI+I+GLCKKG ++ A + L +M +KG  P+  ++  +I GF  +   + A
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 200 S 200
           S
Sbjct: 427 S 427



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREID---SAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           E  FK    V  I + G C     +     + +GI   V+ +  ++   C  N +  A  
Sbjct: 162 EPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACS 221

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L   M   G     + Y  LIH   E      AM LL+ +     E +++ ++ VI GLC
Sbjct: 222 LLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLC 281

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR  EA K  D++  +      +    L++GLC+ G + EA  +L ++      P++ 
Sbjct: 282 KAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTV 337

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
            +NT+I G++V    + A   L KNM
Sbjct: 338 LYNTLINGYVVSGRFEEAKDLLYKNM 363



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++ F+ N   Y I I+G CK    + A K       KG+ L+   Y+ LI  LC   
Sbjct: 397 EMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDG 456

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A++++ +M ++G   ++ T+N LI+   +      A+ L + +  +    N   Y+
Sbjct: 457 KIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYN 516

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I    R+   ++A K + ++  +G     +TYN LI  LCK G   +   L+ QM  +
Sbjct: 517 TLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGE 576

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             FP   S N +I  F    + + A  FL+
Sbjct: 577 EIFPSINSCNILINSFCRTGKVNDALQFLR 606



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 10/196 (5%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   I+   ++  I  A K       +G  LD   Y+ LI  LC     ++ + L
Sbjct: 510 ANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGL 569

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
            ++M  + I   + + N LI +++ + G+ + A+  L+ + +     +I  Y+ +I+GLC
Sbjct: 570 IEQMFGEEIFPSINSCNILI-NSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLC 628

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++GR++EA    + L  KG+ P  VTYN LI+  C +G+  +A +LL +    G  P+  
Sbjct: 629 KMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEI 688

Query: 182 SFNTVIQGFLVKNETD 197
           +++ +I  + VKN +D
Sbjct: 689 TWSILIN-YFVKNNSD 703



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           P   D +EK G          L+R  Y  +  VY L+ID L  VG ++   K L Q+ ++
Sbjct: 75  PTSMDLFEKAG----------LQRG-YIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDE 123

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKN 194
           G V     + +++    K G+  +A +LL+ M    CF P   S+N V++  +  N
Sbjct: 124 GCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGN 179


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 103/176 (58%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I K I  +V+ Y+ LI+ LC   ++KEA +L  +M  +G  A++VTYN ++    +
Sbjct: 263 LNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCK 322

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    A AL   +++   + N   Y+ +IDGLC+ GR + A+K    L  KG    V T
Sbjct: 323 SQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRT 382

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           YN++I+GLCK+GM  +A  +  +M++ GC P++ +F+ +I+    K+E D+A   L
Sbjct: 383 YNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLL 438



 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q F+ N   YG  +NG+CKI E   A+K       +    DV +YS++I+GLC    
Sbjct: 161 VVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKI 220

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A + F +M A+GI   ++TY+ LI           A +LL  +       N+  Y++
Sbjct: 221 VNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNI 280

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+ +EA+K L ++  KG    VVTYN +++GLCK   + +A  L ++MK+ G
Sbjct: 281 LIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWG 340

Query: 176 CFPDSTSFNTVIQGF 190
             P+  ++  +I G 
Sbjct: 341 IQPNKYTYTALIDGL 355



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I IN  C + +       +   +K G   D    ++L+ GLC    +K ++   
Sbjct: 99  NLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFH 158

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR- 122
           DK+VAQG     V+Y  L++   +      A+ LL+ +E      ++ +YS +IDGLC+ 
Sbjct: 159 DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKD 218

Query: 123 ----------------------------------VGRWEEARKKLDQLSEKGLVPGVVTY 148
                                              G+   A   L+++  K + P V TY
Sbjct: 219 KIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTY 278

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           NILI+ LCK+G + EA KLL +M  KG   D  ++N+V+ G       D+A++   K
Sbjct: 279 NILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMK 335



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I I+ +CK  ++  A K       KG   DV  Y+S+++GLC    L +A  LF
Sbjct: 274 NVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALF 333

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM   GI     TY  LI D   K GR  +A  L Q L      +++  Y+++I GLC+
Sbjct: 334 MKMKKWGIQPNKYTYTALI-DGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCK 392

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            G +++A     ++ + G +P  VT++I+I  L +K    +A+KLL  M  KG
Sbjct: 393 EGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 94/196 (47%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  +  + K++   +AI        KGI  ++   + LIN  C   ++  +  +  K++
Sbjct: 68  FGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKIL 127

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G   + +T N L+     K     ++     +    +++N   Y  +++GLC++G   
Sbjct: 128 KLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETR 187

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K L  + ++   P VV Y+ +I+GLCK  ++ +A     +M  +G FP+  +++T+I
Sbjct: 188 CAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLI 247

Query: 188 QGFLVKNETDRASSFL 203
            GF +  +   A S L
Sbjct: 248 WGFCLAGQLMGAFSLL 263



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +  ++  L        A+ L  +M  +GI   LVT N LI+          + ++L  + 
Sbjct: 68  FGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKIL 127

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y+ +    + ++ GLC  G  + +    D++  +G     V+Y  L+NGLCK G   
Sbjct: 128 KLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETR 187

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A KLL  ++++   PD   ++T+I G       ++A  F  +
Sbjct: 188 CAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSE 230


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 113/196 (57%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +  K +   YG  I+G CK R++ SA +        G+  + F+Y+S+I G    N
Sbjct: 567 DMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMN 626

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVY 113
            ++EA++L+ KMV +GI  +L TY  LI D   K GR    + + T    K  L +   +
Sbjct: 627 NVEEAIDLYKKMVNEGIPCDLKTYTSLI-DGLLKSGRLLYASDIHTEMLSKGILPDDRAH 685

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+GLC  G++E ARK L+ ++ K ++P V+ YN LI G  K+G + EA +L  +M +
Sbjct: 686 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 745

Query: 174 KGCFPDSTSFNTVIQG 189
           +G  PD+ +++ ++ G
Sbjct: 746 RGLVPDNITYDILVNG 761



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   ID A+K       KG+ +D+  Y +LI+G C    +K A EL +++
Sbjct: 544 TYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 603

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G++     YN +I           A+ L + +  +    +++ Y+ +IDGL + GR 
Sbjct: 604 RGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL 663

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A     ++  KG++P    + +LINGLC KG    A K+L  M  K   P    +NT+
Sbjct: 664 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTL 723

Query: 187 IQG 189
           I G
Sbjct: 724 IAG 726



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           + A++ G+  +VF +++L++ LC   ++ EA  L+D+++A+GI+  +V+YN +I  +  K
Sbjct: 357 NDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRK 415

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               +A  + + +  + +  N   +++++DG  + G  E A     ++ +  ++P   T 
Sbjct: 416 DNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTL 475

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            I+I GLCK G   E   L  +   +G  P    +NT+I GF+ +   + AS+  ++
Sbjct: 476 GIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYRE 532



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  +G+ LD   YS  ++ LC       A+ L  +M A G      T+  +I    ++  
Sbjct: 184 AKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGN 243

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ L   +      +N+ V + ++ G C  G    A   ++++SE GLVP  VTY++
Sbjct: 244 VAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSV 303

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           LI+G CK G I +A +   +MK KG      S N++++G+L
Sbjct: 304 LIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL 344



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 4/177 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI      Y+SLI+G C  N +  A++L + M  +G+  ++  Y  LI    +++   SA
Sbjct: 537 GITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSA 596

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  L       N  +Y+ +I G   +   EEA     ++  +G+   + TY  LI+G
Sbjct: 597 HELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG 656

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK----KNM 207
           L K G ++ A  +  +M  KG  PD  +   +I G   K + + A   L+    KNM
Sbjct: 657 LLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNM 713



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 37/223 (16%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           ++N  C +   D  I KGI  +V  Y+++I G C  + +  A +++ +M+  G T   VT
Sbjct: 382 KMNEACNLW--DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVT 439

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD--- 134
           +  L+   ++K    +A ++   ++            ++I GLC+ GR  E R   +   
Sbjct: 440 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 499

Query: 135 --------------------------------QLSEKGLVPGVVTYNILINGLCKKGMIM 162
                                           ++ E G+ P  VTY  LI+G CK   I 
Sbjct: 500 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A KLL  MK KG   D  ++ T+I GF  + +   A   L +
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNE 602



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 34/215 (15%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-- 82
           +R  D  +  G  +++ V +SL+ G C    L+ A+ L +++   G+    VTY+ LI  
Sbjct: 248 LRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDG 307

Query: 83  ---HDNWEKQGRFSAMALLQTLERDKYEL-----------------------------NI 110
              + N EK   F +    + +    Y L                             N+
Sbjct: 308 CCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANV 367

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             ++ ++  LC+ G+  EA    D++  KG+ P VV+YN +I G C+K  I  A K+  +
Sbjct: 368 FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKE 427

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M + G  P++ +F  ++ G+  K + + A S   +
Sbjct: 428 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHR 462



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 34/198 (17%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            ++S+I        + EA+ L D MV  G +  L     L+     +    SA+ L+  +
Sbjct: 230 TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEI 289

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-------------------- 141
                  N   YS++IDG C+ G  E+A +   ++  KG+                    
Sbjct: 290 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSW 349

Query: 142 --------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
                         +  V T+N L++ LCK+G + EA  L  ++  KG  P+  S+N +I
Sbjct: 350 QNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII 409

Query: 188 QGFLVKNETDRASSFLKK 205
            G   K+  + A    K+
Sbjct: 410 LGHCRKDNINAACKVYKE 427



 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ING+C   + ++A K       K +   V +Y++LI G      L+EA  L D+M
Sbjct: 684 AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 743

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS 93
           + +G+  + +TY+ L++  ++  G FS
Sbjct: 744 LDRGLVPDNITYDILVNGKFKGDGNFS 770



 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 62/145 (42%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA + F +  A+G+  +   Y+  +H    K     A++LL+ +    +      ++ VI
Sbjct: 176 EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 235

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
               + G   EA +  D +   G    +     L+ G C +G +  A  L+ ++ E G  
Sbjct: 236 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLV 295

Query: 178 PDSTSFNTVIQGFLVKNETDRASSF 202
           P+  +++ +I G       ++A  F
Sbjct: 296 PNKVTYSVLIDGCCKNGNIEKAFEF 320


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 3/179 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM  +REI    ++G+  +   Y++LI+G C  + L  A +LF +M++ G+  + +T N 
Sbjct: 446 GMQLLREIS---RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 502

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L++   E +    A+ L + ++  K +L+   Y+++I G+C+  + +EA      L   G
Sbjct: 503 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 562

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P V TYN++I+G C K  I +A+ L  +MK+ G  PD++++NT+I+G L   E D++
Sbjct: 563 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 621



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING+C   ++ E    ++  + KG+ +DV  Y +++NG+C     K A+ L  KM
Sbjct: 223 TFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 282

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I  ++V Y+ +I D   K G  S A  L   +       N+  Y+ +IDG C  GR
Sbjct: 283 EETHIKPDVVIYSAII-DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 341

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           W +A++ L  + E+ + P V+T+N LI+   K+G + EA+KL  +M  +  FPD+ ++N+
Sbjct: 342 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 401

Query: 186 VIQGFLVKNETDRA 199
           +I GF   N  D A
Sbjct: 402 MIYGFCKHNRFDDA 415



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 91/161 (56%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+   V  +++LINGLC   R+ EA  L +KMV +G+  ++VTY  +++   + 
Sbjct: 210 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 269

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               SA+ LL  +E    + ++ +YS +ID LC+ G   +A+    ++ EKG+ P V TY
Sbjct: 270 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 329

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           N +I+G C  G   +A +LL  M E+   PD  +FN +I  
Sbjct: 330 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 370



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 17/202 (8%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N + + I I   C   ++  ++       K G   DV  +++L++GLC  +R+ E
Sbjct: 135 RRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISE 194

Query: 59  AV----------ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           A+           LFD+MV  G+T  ++T+N LI+    +     A AL+  +      +
Sbjct: 195 ALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHI 254

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  Y  +++G+C++G  + A   L ++ E  + P VV Y+ +I+ LCK G   +A  L 
Sbjct: 255 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLF 314

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +M EKG  P+  ++N +I GF
Sbjct: 315 SEMLEKGIAPNVFTYNCMIDGF 336



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 11/195 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK      A       ++KGI  +VF Y+ +I+G C+F R
Sbjct: 282 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 341

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A  L   M+ + I  +++T+N LI  + ++   F A  L   +       +   Y+ 
Sbjct: 342 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 401

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  R+++A+   D ++     P VVT+N +I+  C+   + E  +LL ++  +G
Sbjct: 402 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 457

Query: 176 CFPDSTSFNTVIQGF 190
              ++T++NT+I GF
Sbjct: 458 LVANTTTYNTLIHGF 472



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 25/170 (14%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I L+++ ++ LI   C  ++L  ++  F K+   G   ++VT+N L+H    +     A+
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           AL                          G   E     DQ+ E GL P V+T+N LINGL
Sbjct: 197 ALF-------------------------GYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C +G ++EA  L+ +M  KG   D  ++ T++ G     +T  A + L K
Sbjct: 232 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 281


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 116/212 (54%), Gaps = 15/212 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y + I  +C    ID A       I +G   +V  Y+ LI+GLC   +
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           ++EA  +  KMV   I   ++TYN LI + + K GR   A  LL  +E+   + N+  ++
Sbjct: 352 IEEANGVCRKMVKDRIFPSVITYNALI-NGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLCRVG+  +A   L ++ + GL P +V+YN+LI+GLC++G +  A KLL  M   
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN-- 468

Query: 175 GCF---PDSTSFNTVIQGFLVKNETDRASSFL 203
            CF   PD  +F  +I  F  + + D AS+FL
Sbjct: 469 -CFDIEPDCLTFTAIINAFCKQGKADVASAFL 499



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 89/163 (54%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YS LI+GLC   RL+EA  L D+M  +G      TY  LI    ++     A  L   + 
Sbjct: 269 YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMI 328

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               + N+  Y+++IDGLCR G+ EEA     ++ +  + P V+TYN LING CK G ++
Sbjct: 329 PRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVV 388

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A +LL  M+++ C P+  +FN +++G     +  +A   LK+
Sbjct: 389 PAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CK  + D A       ++KGI LD    ++LI+G+C   + ++A+ + + +V   I
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRI 542

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
                + N +I D   K  +    +A+L  + +     ++  Y+ ++DGL R G    + 
Sbjct: 543 LTTPHSLN-VILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+ +   G +P V  Y I+INGLC+ G + EA+KLL  M++ G  P+  ++  +++G+
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661

Query: 191 LVKNETDRA 199
           +   + DRA
Sbjct: 662 VNNGKLDRA 670



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N H Y + I+G+C+  +I+ A       +K  I   V  Y++LING C   R+  A E
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L   M  +     + T+N L+         + A+ LL+ +  +    +I  Y+++IDGLC
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    A K L  ++   + P  +T+  +IN  CK+G    A   L  M  KG   D  
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 182 SFNTVIQG 189
           +  T+I G
Sbjct: 513 TGTTLIDG 520



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 15  YGIRINGMCKIREIDSAIK---KGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I+G+C+   +++A K      C D+      ++++IN  C   +   A      M+
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI+ + VT   LI D   K G+   A+ +L+TL + +        ++++D L +  + 
Sbjct: 504 RKGISLDEVTGTTLI-DGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKV 562

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +E    L ++++ GLVP VVTY  L++GL + G I  + ++L  MK  GC P+   +  +
Sbjct: 563 KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTII 622

Query: 187 IQGFLVKNETDRASSFL 203
           I G       + A   L
Sbjct: 623 INGLCQFGRVEEAEKLL 639



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 62/237 (26%)

Query: 19  INGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           I G  +I E+   +K   CL +V+ Y+ +INGLC F R++EA +L   M   G++   VT
Sbjct: 597 ITGSFRILEL---MKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653

Query: 78  YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKK 132
           Y  ++   +   G+   A+  ++ +    YELN  +YS ++ G       +   EE+   
Sbjct: 654 YTVMVK-GYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVS 712

Query: 133 LDQLSEK----------------GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
              L E                 G + G+  +  L+  LCK+G   E++ L+  + E+G 
Sbjct: 713 DIALRETDPECINELISVVEQLGGCISGLCIF--LVTRLCKEGRTDESNDLVQNVLERGV 770

Query: 177 F----------------------------------PDSTSFNTVIQGFLVKNETDRA 199
           F                                  P   SF  VIQG   + + +RA
Sbjct: 771 FLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERA 827



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 36/144 (25%)

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--------- 142
           F A    + +E D + + +  Y  +++ LC+ G  E A   + ++ + G V         
Sbjct: 177 FLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSL 236

Query: 143 ---------------------------PGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
                                      P  V+Y+ILI+GLC+ G + EA  L  QM EKG
Sbjct: 237 LLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG 296

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C P + ++  +I+    +   D+A
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKA 320


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 3/179 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM  +REI    ++G+  +   Y++LI+G C  + L  A +LF +M++ G+  + +T N 
Sbjct: 451 GMQLLREIS---RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L++   E +    A+ L + ++  K +L+   Y+++I G+C+  + +EA      L   G
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P V TYN++I+G C K  I +A+ L  +MK+ G  PD++++NT+I+G L   E D++
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING+C   ++ E    ++  + KG+ +DV  Y +++NG+C     K A+ L  KM
Sbjct: 228 TFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I  ++V Y+ +I D   K G  S A  L   +       N+  Y+ +IDG C  GR
Sbjct: 288 EETHIKPDVVIYSAII-DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           W +A++ L  + E+ + P V+T+N LI+   K+G + EA+KL  +M  +  FPD+ ++N+
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 186 VIQGFLVKNETDRA 199
           +I GF   N  D A
Sbjct: 407 MIYGFCKHNRFDDA 420



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 91/161 (56%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+   V  +++LINGLC   R+ EA  L +KMV +G+  ++VTY  +++   + 
Sbjct: 215 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               SA+ LL  +E    + ++ +YS +ID LC+ G   +A+    ++ EKG+ P V TY
Sbjct: 275 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 334

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           N +I+G C  G   +A +LL  M E+   PD  +FN +I  
Sbjct: 335 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 375



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N + + I I   C   ++  ++       K G   DV  +++L++GLC  +R+ E
Sbjct: 135 RRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISE 194

Query: 59  A---------------VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           A               V LFD+MV  G+T  ++T+N LI+    +     A AL+  +  
Sbjct: 195 ALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVG 254

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
               +++  Y  +++G+C++G  + A   L ++ E  + P VV Y+ +I+ LCK G   +
Sbjct: 255 KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD 314

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  L  +M EKG  P+  ++N +I GF
Sbjct: 315 AQYLFSEMLEKGIAPNVFTYNCMIDGF 341



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 11/195 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK      A       ++KGI  +VF Y+ +I+G C+F R
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A  L   M+ + I  +++T+N LI  + ++   F A  L   +       +   Y+ 
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  R+++A+   D ++     P VVT+N +I+  C+   + E  +LL ++  +G
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462

Query: 176 CFPDSTSFNTVIQGF 190
              ++T++NT+I GF
Sbjct: 463 LVANTTTYNTLIHGF 477



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 20/170 (11%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I L+++ ++ LI   C  ++L  ++  F K+   G   ++VT+N L+H    +     A+
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           AL   +        +E   L            EA    DQ+ E GL P V+T+N LINGL
Sbjct: 197 ALFGYM--------VETGFL------------EAVALFDQMVEIGLTPVVITFNTLINGL 236

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C +G ++EA  L+ +M  KG   D  ++ T++ G     +T  A + L K
Sbjct: 237 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G   F  L +A++ FD MV        V  N +I           A++L + +E  +
Sbjct: 77  LKSGSHYFKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRR 136

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI---- 161
             LNI  ++++I   C   +   +     +L++ G  P VVT+N L++GLC +  I    
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196

Query: 162 -----------MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                      +EA  L  QM E G  P   +FNT+I G  ++     A++ + K
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNK 251


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 10/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +    N   Y   ++G+CK   +D A+       ++G    V  Y+S+I G C   
Sbjct: 99  EMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRAR 158

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA    ++MVA+G   +++TY  LI    + +     + LL  + R  +  +I  YS
Sbjct: 159 RVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYS 218

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGLC+ GR  +A   +D   E    P  +TYN LI G C+ G + EA +LL +M + 
Sbjct: 219 TVIDGLCKAGRLRDA---VDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 275

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C PD  ++ T++  F      D A    ++
Sbjct: 276 KCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ 306



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 109/209 (52%), Gaps = 6/209 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLK 57
           ++T + F  +   Y   I+G+CK   +  A+    +         Y+SLI G C    + 
Sbjct: 204 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMD 263

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
           EA+ L  KMV      ++VTY  L+   + K GR   A  L Q +  +K   ++  ++ +
Sbjct: 264 EAIRLLGKMVDDKCAPDVVTYTTLM-SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSL 322

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC  GR E+A + L++++ +G  P + TYN +++G CK   + +A++L+   + +G 
Sbjct: 323 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGF 382

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P++ ++N ++ G      TD+A  +L +
Sbjct: 383 VPNTVTYNILVAGCCRAGRTDQALQYLDQ 411



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 11/202 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+  ++D AI+            DV  Y++L++  C   RL +A ELF +M
Sbjct: 248 TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQM 307

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA  ++ ++VT+  L+ D    +GR   A+ LL+ + R      I  Y+ V+DG C+  +
Sbjct: 308 VANKLSPDVVTFTSLV-DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQ 366

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFN 184
             +A + +     +G VP  VTYNIL+ G C+ G   +A + L Q+  E G  P S +  
Sbjct: 367 VRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMY 426

Query: 185 TVIQGFLVKN-ETDRASSFLKK 205
            +I   L ++  TD A  F ++
Sbjct: 427 AIILDALCRDGRTDDAVQFYEE 448



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++  CK+  +D A       +   +  DV  ++SL++GLC   R+++A+EL +++
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G    + TYN ++    +      A  L+       +  N   Y++++ G CR GR 
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 402

Query: 127 EEARKKLDQL-SEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++A + LDQL SE G  P  V  Y I+++ LC+ G   +A +   +M ++G  P + +F 
Sbjct: 403 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 462

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           TV+      ++  +A   L++
Sbjct: 463 TVVFALCKAHQPQQAHELLEE 483



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 6/196 (3%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           ++ + I G+C+   +  A+            D   Y+ L++GL    RL++AV++  +MV
Sbjct: 7   LHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +     +  T   ++           A  L++ +       N   YS ++DGLC+  R +
Sbjct: 67  SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLD 126

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   ++ ++E+G  P VVTYN +I G C+   + EA   + QM  +GC PD  ++  +I
Sbjct: 127 EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALI 186

Query: 188 QGFLVKNETDRASSFL 203
            GF    +  R    L
Sbjct: 187 GGFCKSRDVGRGLELL 202



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 90/166 (54%), Gaps = 1/166 (0%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
             +++ +I GLC   RL+ A+ ++ +M       + +TY  L+H   + +    A+ +LQ
Sbjct: 5   TLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQ 63

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +   ++  +    ++V+  LC   R ++AR+ ++++  +G+    +TY+ L++GLCK  
Sbjct: 64  EMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 123

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA  L+  M E+GC P   ++N++I GF      D A  F+++
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQ 169



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F  Y   ++G+ K R +  A++            D    + ++  LC  +R+ +A EL 
Sbjct: 38  DFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELV 97

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+ +G+ A  +TY+ L+    + +    A+AL++T+        +  Y+ +I G CR 
Sbjct: 98  EEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA 157

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R +EA   ++Q+  +G  P ++TY  LI G CK   +    +LL ++  +G  PD  ++
Sbjct: 158 RRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTY 217

Query: 184 NTVIQGF 190
           +TVI G 
Sbjct: 218 STVIDGL 224



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+C    ++ A+       ++G    ++ Y+ +++G C  N++++A EL     ++G 
Sbjct: 323 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGF 382

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTL--ERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               VTYN L+           A+  L  L  E      ++ +Y++++D LCR GR ++A
Sbjct: 383 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 442

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  +++ ++G VP   T+  ++  LCK     +A +LL +M + G  P   + + V+  
Sbjct: 443 VQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 502

Query: 190 F 190
           +
Sbjct: 503 Y 503


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+  CK  ++D A+       + GI   V+ YSSLI+G C   +L+ A  LFD+M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A G+   +V Y  LI    ++    +A  L   +       N   ++ +I GLC   R 
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++ E  ++P  VTYN+LI G CK+G  + A +LL +M EKG  PD+ ++  +
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 187 IQGFLVKNETDRASSFL 203
           I G         A  F+
Sbjct: 572 ISGLCSTGRVSEAREFM 588



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++   K G+   +FVY++LIN +C   +L EA  LF+ M  +G+    VTY+ LI D++ 
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI-DSFC 401

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K+G+   A+  L  +     +  +  YS +I G C++G+   A+   D++   GL P VV
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            Y  LI+G CK+G +  A +L  +M  KG  P++ +F  +I G    N    A+
Sbjct: 462 IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   IN MCK  ++D A         KG+  +   YS LI+  C   +L  A+    KM
Sbjct: 357 VYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM 416

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI A +  Y+ LI  + +     +A +L   +  +  + N+ +Y+ +I G C+ G  
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +   +++ KG+ P   T+  LI+GLC    + EA+KL  +M E    P+  ++N +
Sbjct: 477 HNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVL 536

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G   +  T RA   L +
Sbjct: 537 IEGHCKEGNTVRAFELLDE 555



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +Y   I+G CK  E+ +A +       KGI  + + +++LI+GLC  NR+ EA 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF +MV   +    VTYN LI  + ++     A  LL  +       +   Y  +I GL
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  GR  EAR+ ++ L  +      + ++ L++G CK+G + +A     +M  +G   D 
Sbjct: 576 CSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDL 635

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
             ++ +I G L + +       LK+
Sbjct: 636 VCYSVLIYGILRQQDRRSIIDLLKQ 660



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+ +IR+        D  +  G+  DV+VY++++  LC       A E+  +M + G 
Sbjct: 187 LNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGC 246

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + TYN  I    + Q  + A+ +   L       ++  Y  ++ GLC+V  +E   +
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEE 306

Query: 132 KLDQLSEKGLVPG-----------------------------------VVTYNILINGLC 156
            ++++ E G VP                                    +  YN LIN +C
Sbjct: 307 MMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMC 366

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K G + EA+ L   M  KG FP+  +++ +I  F  + + D A  FL K
Sbjct: 367 KDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +G   +V  Y++LINGLC    + +A  L  +M+A        TY   + D    
Sbjct: 694 DIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFL-DYLTS 752

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L  +  + +  N   Y+++I G C++GR +EA + L  + + G+ P  ++Y
Sbjct: 753 EGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISY 812

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +I   C++G + EA KL   M  +G  PD+ ++N +I G  V  E  +A
Sbjct: 813 STIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKA 863



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 41/239 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL  ++ K N   +   ++G CK   +D A+        +G+ +D+  YS LI G+    
Sbjct: 590 DLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQ 649

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             +  ++L  +M  QG+  + V Y  +I  N +      A  L   +  +    N+  Y+
Sbjct: 650 DRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYT 709

Query: 115 LVIDGLCRVGRWEEAR-------------------------------KKLDQLSE---KG 140
            +I+GLC++G  ++A                                +K  QL +   +G
Sbjct: 710 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG 769

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +   VTYNILI G CK G I EA ++LV M + G  PD  S++T+I  +  + +   A
Sbjct: 770 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 828



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G+CK + +  A++       KG+  DV  Y +L+ GLC     +   E+ ++M
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G        + L+ D   K+G   SA  L+  +++     ++ VY+ +I+ +C+ G+
Sbjct: 312 IEFGFVPSEAAVSNLV-DGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA    + +  KGL P  VTY+ILI+  CK+G +  A   L +M E G       +++
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 186 VIQG 189
           +I G
Sbjct: 431 LISG 434



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 42/212 (19%)

Query: 14  VYGIRINGMCK----IRE---IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD-- 64
            Y + I G CK    +R    +D  ++KG+  D + Y  LI+GLC+  R+ EA E  +  
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 65  ---------------------------------KMVAQGITAELVTYNPLIHDNWEKQGR 91
                                            +M+ +G+  +LV Y+ LI+    +Q R
Sbjct: 592 QGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDR 651

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            S + LL+ +       +  +Y+ +ID   + G  + A    D +  +G +P VVTY  L
Sbjct: 652 RSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTAL 711

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           INGLCK G++ +A+ L  +M      P+  ++
Sbjct: 712 INGLCKIGLMDKAELLCREMLASNSLPNQNTY 743



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLING---------LCTFNRLKEAVE 61
           N   Y   ING+CKI  +D A  + +C ++   +SL N          L +   +++A++
Sbjct: 704 NVVTYTALINGLCKIGLMDKA--ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ 761

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L D ++ +G  A  VTYN LI   + K GR    A +L  +       +   YS +I   
Sbjct: 762 LHDVLL-EGFLANTVTYNILIR-GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEY 819

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G  +EA K  + +  +G+ P  V YN LI G C  G + +A +L   M  +G  P+ 
Sbjct: 820 CRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNR 879

Query: 181 TSFNTVIQG 189
            ++N++I G
Sbjct: 880 ATYNSLIHG 888



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   +   S ++NGL    + + A+ LFD++V+ G+  ++  Y  ++    E +    A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             ++  +E    +L++  Y++ I GLC+  R  EA +  + LS KGL   V TY  L+ G
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK       ++++ +M E G  P   + + ++ G   K     A   + K
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNK 345



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           K  ++   + +G   +   Y+ LI G C   R++EA E+   M+  GI+ + ++Y+ +I+
Sbjct: 758 KAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 817

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           +   +     A+ L +++       +   Y+ +I G C  G   +A +  D +  +G+ P
Sbjct: 818 EYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKP 877

Query: 144 GVVTYNILINGLC 156
              TYN LI+G C
Sbjct: 878 NRATYNSLIHGTC 890


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 3/179 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM  +REI    ++G+  +   Y++LI+G C  + L  A +LF +M++ G+  + +T N 
Sbjct: 235 GMQLLREIS---RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 291

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L++   E +    A+ L + ++  K +L+   Y+++I G+C+  + +EA      L   G
Sbjct: 292 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 351

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P V TYN++I+G C K  I +A+ L  +MK+ G  PD++++NT+I+G L   E D++
Sbjct: 352 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 410



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING+C   ++ E    ++  + KG+ +DV  Y +++NG+C     K A+ L  KM
Sbjct: 12  TFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 71

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I  ++V Y+ +I D   K G  S A  L   +       N+  Y+ +IDG C  GR
Sbjct: 72  EETHIKPDVVIYSAII-DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 130

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           W +A++ L  + E+ + P V+T+N LI+   K+G + EA+KL  +M  +  FPD+ ++N+
Sbjct: 131 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 190

Query: 186 VIQGFLVKNETDRA 199
           +I GF   N  D A
Sbjct: 191 MIYGFCKHNRFDDA 204



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 90/158 (56%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+   V  +++LINGLC   R+ EA  L +KMV +G+  ++VTY  +++   +    
Sbjct: 2   VEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDT 61

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ LL  +E    + ++ +YS +ID LC+ G   +A+    ++ EKG+ P V TYN +
Sbjct: 62  KSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCM 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           I+G C  G   +A +LL  M E+   PD  +FN +I  
Sbjct: 122 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 159



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK      A       ++KGI  +VF Y+ +I+G C+F R
Sbjct: 71  MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A  L   M+ + I  +++T+N LI  + ++   F A  L   +       +   Y+ 
Sbjct: 131 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  R+++A+   D ++     P VVT+N +I+  C+   + E  +LL ++  +G
Sbjct: 191 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 246

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              ++T++NT+I GF   +  + A    ++
Sbjct: 247 LVANTTTYNTLIHGFCEVDNLNAAQDLFQE 276



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E GL P V+T+N LINGLC +G ++EA  L+ +M  KG   D  ++ T++ G     +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 196 TDRASSFLKK 205
           T  A + L K
Sbjct: 61  TKSALNLLSK 70


>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g18475-like [Glycine max]
          Length = 640

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++F YS+ ++GLC   R+KEA ELF++MV++  I  + +TYN LI++   +     A  +
Sbjct: 362 NLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNV 421

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ ++ ++   N+  YS ++DGLC+VG+ E+A+  L ++   GL P  VTY  LIN LC+
Sbjct: 422 IEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCR 481

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G I EA  LL ++KE  C  D+ +FN ++ G   ++  + A   L+K
Sbjct: 482 NGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEK 529



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +   R   N + Y   ++G+CK+ +++ A          G+  D   Y+SLIN LC   +
Sbjct: 425 MKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQ 484

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ L  ++      A+ VT+N +I     ++ RF  A+ +L+ L +    LN   Y 
Sbjct: 485 IGEAMGLLKEIKENTCQADTVTFN-VILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYR 543

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +V++ L +    ++A++ L  +  +G  P   T N L+  LCK GM+ +A   L  + E 
Sbjct: 544 IVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALFYLVEM 603

Query: 175 GCFPDSTSFNTVI 187
           G  P   S+  +I
Sbjct: 604 GFQPGLESWEVLI 616



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN +C+  +I  A      IK+  C  D   ++ ++ GLC  +R +EA+++ +K+
Sbjct: 471 TYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKL 530

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             QG+     +Y  +++   +K     A  LL  +    +  +    + ++  LC+ G  
Sbjct: 531 PQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMV 590

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           ++A   L  L E G  PG+ ++ +LI  +C++  ++   +LL ++
Sbjct: 591 DDAAVALFYLVEMGFQPGLESWEVLIGLICRERKLLYVFELLNEL 635



 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASS 201
           P + TY+  ++GLC+ G + EA +L  +M  +    PD  ++N +I  F  + + DRA +
Sbjct: 361 PNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARN 420

Query: 202 ---FLKKN 206
              F+K N
Sbjct: 421 VIEFMKSN 428


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 113/196 (57%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +  K +   YG  I+G CK R++ SA +        G+  + F+Y+S+I G    N
Sbjct: 449 DMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMN 508

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVY 113
            ++EA++L+ KMV +GI  +L TY  LI D   K GR    + + T    K  L +   +
Sbjct: 509 NVEEAIDLYKKMVNEGIPCDLKTYTSLI-DGLLKSGRLLYASDIHTEMLSKGILPDDRAH 567

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+GLC  G++E ARK L+ ++ K ++P V+ YN LI G  K+G + EA +L  +M +
Sbjct: 568 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 627

Query: 174 KGCFPDSTSFNTVIQG 189
           +G  PD+ +++ ++ G
Sbjct: 628 RGLVPDNITYDILVNG 643



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   ID A+K       KG+ +D+  Y +LI+G C    +K A EL +++
Sbjct: 426 TYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 485

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G++     YN +I           A+ L + +  +    +++ Y+ +IDGL + GR 
Sbjct: 486 RGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL 545

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A     ++  KG++P    + +LINGLC KG    A K+L  M  K   P    +NT+
Sbjct: 546 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTL 605

Query: 187 IQG 189
           I G
Sbjct: 606 IAG 608



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           + A++ G+  +VF +++L++ LC   ++ EA  L+D+++A+GI+  +V+YN +I  +  K
Sbjct: 239 NDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRK 297

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               +A  + + +  + +  N   +++++DG  + G  E A     ++ +  ++P   T 
Sbjct: 298 DNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTL 357

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            I+I GLCK G   E   L  +   +G  P    +NT+I GF+ +   + AS+  ++
Sbjct: 358 GIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYRE 414



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  V    + G C    + SA+       + G+  +   YS LI+G C    +++A E +
Sbjct: 144 NLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFY 203

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE---LNIEVYSLVIDGL 120
            +M  +GI + + + N ++    + Q   +A     T+  D  E    N+  ++ ++  L
Sbjct: 204 SEMKTKGIRSSVYSLNSILEGYLKCQSWQNAF----TMFNDALESGLANVFTFNTLLSWL 259

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  EA    D++  KG+ P VV+YN +I G C+K  I  A K+  +M + G  P++
Sbjct: 260 CKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNA 319

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F  ++ G+  K + + A S   +
Sbjct: 320 VTFTILMDGYFKKGDIENAFSIFHR 344



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 4/177 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI      Y+SLI+G C  N +  A++L + M  +G+  ++  Y  LI    +++   SA
Sbjct: 419 GITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSA 478

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  L       N  +Y+ +I G   +   EEA     ++  +G+   + TY  LI+G
Sbjct: 479 HELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG 538

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK----KNM 207
           L K G ++ A  +  +M  KG  PD  +   +I G   K + + A   L+    KNM
Sbjct: 539 LLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNM 595



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  +G+ LD   YS  ++ LC       A+ L  +M A G      T+  +I    ++  
Sbjct: 66  AKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGN 125

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ L   +      +N+ V + ++ G C  G    A   ++++SE GLVP  VTY++
Sbjct: 126 VAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSV 185

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           LI+G CK G I +A +   +MK KG      S N++++G+L
Sbjct: 186 LIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL 226



 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 35/212 (16%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I KGI  +V  Y+++I G C  + +  A +++ +M+  G T   VT+  L+   ++K
Sbjct: 273 DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKK 332

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD-------------- 134
               +A ++   ++            ++I GLC+ GR  E R   +              
Sbjct: 333 GDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPY 392

Query: 135 ---------------------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                                ++ E G+ P  VTY  LI+G CK   I  A KLL  MK 
Sbjct: 393 NTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKR 452

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG   D  ++ T+I GF  + +   A   L +
Sbjct: 453 KGLKMDIKAYGTLIDGFCKRRDMKSAHELLNE 484



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 34/198 (17%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            ++S+I        + EA+ L D MV  G +  L     L+     +    SA+ L+  +
Sbjct: 112 TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEI 171

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-------------------- 141
                  N   YS++IDG C+ G  E+A +   ++  KG+                    
Sbjct: 172 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSW 231

Query: 142 --------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
                         +  V T+N L++ LCK+G + EA  L  ++  KG  P+  S+N +I
Sbjct: 232 QNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII 291

Query: 188 QGFLVKNETDRASSFLKK 205
            G   K+  + A    K+
Sbjct: 292 LGHCRKDNINAACKVYKE 309



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 1/187 (0%)

Query: 17  IRINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +R N  C+ RE+ +  +  G+  D F    ++        + EA + F +  A+G+  + 
Sbjct: 16  VRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQ 75

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
             Y+  +H    K     A++LL+ +    +      ++ VI    + G   EA +  D 
Sbjct: 76  EAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDD 135

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +   G    +     L+ G C +G +  A  L+ ++ E G  P+  +++ +I G      
Sbjct: 136 MVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGN 195

Query: 196 TDRASSF 202
            ++A  F
Sbjct: 196 IEKAFEF 202



 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ING+C   + ++A K       K +   V +Y++LI G      L+EA  L D+M
Sbjct: 566 AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 625

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS 93
           + +G+  + +TY+ L++  ++  G FS
Sbjct: 626 LDRGLVPDNITYDILVNGKFKGDGNFS 652



 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+  +   N   EA EL +KM+  G+T +  T + ++    ++     A       +   
Sbjct: 11  LLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARG 70

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            EL+ E YS+ +  LC       A   L ++   G +P   T+  +I    K+G + EA 
Sbjct: 71  VELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEAL 130

Query: 166 KL 167
           +L
Sbjct: 131 RL 132


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 113/199 (56%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   Y   I G CK + ++   +       +G+  D   Y++LI GL        A ++F
Sbjct: 323 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 382

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV+ G+  +++TY+ L+ D     G+   A+ +   +++ + +L+I +Y+ +I+G+C+
Sbjct: 383 KQMVSDGVPPDIMTYSILL-DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 441

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++       LS KG+ P VVTYN +I+GLC K ++ EA  LL +MKE G  PDS +
Sbjct: 442 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 501

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 502 YNTLIRAHL--RDGDKAAS 518



 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++  + N   YG+ +NG+CK  +ID A           I  DV +++++I+ LC +  
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A+ LF +M  +GI   +VTY+ LI       GR+S A  LL  +   K   N+  ++
Sbjct: 200 VDDALNLFKEMETKGIRPNVVTYSSLIS-CLCSYGRWSDASQLLSDMIEKKINPNLVTFN 258

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + G++ EA K  D + ++ + P + TYN LING C    + +A ++   M  K
Sbjct: 259 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 318

Query: 175 GCFPDSTSFNTVIQGF 190
            CFPD  ++NT+I+GF
Sbjct: 319 DCFPDLDTYNTLIKGF 334



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 94/172 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G   ++  Y  ++NGLC    +  A  L +KM A  I A++V +N +I    +
Sbjct: 137 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 196

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L + +E      N+  YS +I  LC  GRW +A + L  + EK + P +VT
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI+   K+G  +EA+KL   M ++   PD  ++N++I GF + +  D+A
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 308



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 2/181 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G
Sbjct: 87  NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 144

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               LVTY  +++   ++     A  LL  +E  K E ++ +++ +ID LC+    ++A 
Sbjct: 145 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 204

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M EK   P+  +FN +I  F
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 264

Query: 191 L 191
           +
Sbjct: 265 V 265



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G    +   SSL+NG C   R+ +AV L D+MV  G   + +T+  LIH  +     
Sbjct: 71  MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 130

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+AL+  + +   + N+  Y +V++GLC+ G  + A   L+++    +   VV +N +
Sbjct: 131 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 190

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+ LCK   + +A  L  +M+ KG  P+  +++++I           AS  L
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +   G+   Y   I G+    + D+A       +  G+  D+  YS L++GLC   
Sbjct: 349 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 408

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+FD M    I  ++  Y  +I    +         L  +L     + N+  Y+
Sbjct: 409 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 468

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC     +EA   L ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 469 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 528

Query: 175 GCFPDSTSFNTV 186
               D+++   V
Sbjct: 529 RFVGDASTIGLV 540


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 114/210 (54%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +     + N   + + ING CK + ++ AI       K+G+  +   Y++LI+  C   R
Sbjct: 289 MVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGR 348

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A  L++ M+ +GI  E+ TYN LI     K    +A +L+  +   K   ++  Y++
Sbjct: 349 MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G   +A K LD++ EKGL P  VTYN L++G C++G +  A  +  +M+ KG
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +  + N +I+GF +K   + A+  L +
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNE 498



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G CK   +  A++       +G+  +V  Y+ LINGLC+  ++ EAV L D+MV
Sbjct: 231 YNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMV 290

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +  +   +VT+N LI+   + +    A+ L   +E+   + N   Y+ +ID  C+ GR E
Sbjct: 291 SSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRME 350

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    + + ++G+ P V TYN LI GLC+KG +  A  L+ +M  K    D  ++N +I
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILI 410

Query: 188 QGFLVKNETDRASSFL 203
                K E+ +A   L
Sbjct: 411 DSLCKKGESRKAVKLL 426



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 111/199 (55%), Gaps = 10/199 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCTFN 54
           ++ +++ + N   + I +NG+CK+ +++ A   I+     G+  +V  Y++LI+G C   
Sbjct: 145 EMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMG 204

Query: 55  R---LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           R   + +A  +  +MVA+GI    VTYN LI    + +    AM +   ++R     N+ 
Sbjct: 205 RIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVV 264

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+GLC  G+ +EA    DQ+    L P VVT+N+LING CK   + EA  L   M
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM 324

Query: 172 KEKGCFPDSTSFNTVIQGF 190
           +++G  P++ ++ T+I  +
Sbjct: 325 EKQGVDPNAMTYTTLIDAY 343



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK+ I L+V  ++ ++NGLC   +L  A ++ + M   G++  ++TYN LI D + K GR
Sbjct: 147 IKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLI-DGYCKMGR 205

Query: 92  FSAM----ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              M    A+L+ +       N   Y+++IDG C+      A +   ++  +GL P VVT
Sbjct: 206 IGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVT 265

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           YNILINGLC  G + EA  L  QM      P+  + N +I GF  KN+T
Sbjct: 266 YNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGF-CKNKT 313



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREI------DSAIK----KGICLDVFVYSSLINGLCTFNRLKEAV 60
           N   Y   I+G CK+  I      D+ +K    KGIC +   Y+ LI+G C    +  A+
Sbjct: 189 NVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAM 248

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F +M  QG+   +VTYN LI+          A+AL   +     E N+  ++++I+G 
Sbjct: 249 RVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGF 308

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+     EA    + + ++G+ P  +TY  LI+  CK G + +A  L   M ++G FP+ 
Sbjct: 309 CKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEV 368

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++N +I G   K +   A S + +
Sbjct: 369 STYNCLIAGLCRKGDVKAARSLMNE 393



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 9/155 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G+C+  ++ +A       + K +  DV  Y+ LI+ LC     ++AV+L D+M 
Sbjct: 371 YNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMF 430

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+    VTYN L+ D + ++G   A  +++T +ER   + N+  ++++I G C  GR 
Sbjct: 431 EKGLNPSHVTYNTLM-DGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRL 489

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E+A   L+++ E+GLVP   TY I+   + +KG +
Sbjct: 490 EDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFV 524


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 113/199 (56%), Gaps = 11/199 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   Y   I G CK + ++   +       +G+  D   Y++LI GL        A ++F
Sbjct: 324 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 383

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV+ G+  +++TY+ L+ D     G+   A+ +   +++ + +L+I +Y+ +I+G+C+
Sbjct: 384 KQMVSDGVPPDIMTYSILL-DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++       LS KG+ P VVTYN +I+GLC K ++ EA  LL +MKE G  PDS +
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 502

Query: 183 FNTVIQGFLVKNETDRASS 201
           +NT+I+  L   + D+A+S
Sbjct: 503 YNTLIRAHL--RDGDKAAS 519



 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++  + N   YG+ +NG+CK  +ID A           I  DV +++++I+ LC +  
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A+ LF +M  +GI   +VTY+ LI       GR+S A  LL  +   K   N+  ++
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLI-SCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 259

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + G++ EA K  D + ++ + P + TYN LING C    + +A ++   M  K
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319

Query: 175 GCFPDSTSFNTVIQGF 190
            CFPD  ++NT+I+GF
Sbjct: 320 DCFPDLDTYNTLIKGF 335



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 94/172 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G   ++  Y  ++NGLC    +  A  L +KM A  I A++V +N +I    +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L + +E      N+  YS +I  LC  GRW +A + L  + EK + P +VT
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI+   K+G  +EA+KL   M ++   PD  ++N++I GF + +  D+A
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 2/181 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G
Sbjct: 88  NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               LVTY  +++   ++     A  LL  +E  K E ++ +++ +ID LC+    ++A 
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M EK   P+  +FN +I  F
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265

Query: 191 L 191
           +
Sbjct: 266 V 266



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  +I  A+       K G    +   SSL+NG C   R+ +AV L 
Sbjct: 44  NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 103

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + +T+  LIH  +       A+AL+  + +   + N+  Y +V++GLC+ 
Sbjct: 104 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 163

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++    +   VV +N +I+ LCK   + +A  L  +M+ KG  P+  ++
Sbjct: 164 GDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 223

Query: 184 NTVIQGFLVKNETDRASSFL 203
           +++I           AS  L
Sbjct: 224 SSLISCLCSYGRWSDASQLL 243



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +F ++ L++ +    +    + L +KM   GI+  L TYN LI+    +     A+ALL 
Sbjct: 10  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + +  YE +I   S +++G C   R  +A   +DQ+ E G  P  +T+  LI+GL    
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              EA  L+ +M ++GC P+  ++  V+ G   + + D A + L K
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 175



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +   G+   Y   I G+    + D+A       +  G+  D+  YS L++GLC   
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+FD M    I  ++  Y  +I    +         L  +L     + N+  Y+
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC     +EA   L ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 529

Query: 175 GCFPDSTSFNTV 186
               D+++   V
Sbjct: 530 RFVGDASTIGLV 541


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
            ++ +  + N   Y + ING+C+   +  A +       KG   D   Y++L+NG C   
Sbjct: 274 SMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEG 333

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A+ +  +MV  G++  +VTY  LI+   + +    AM     +       N   Y+
Sbjct: 334 NFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYT 393

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG  R G   EA + L++++E G  P VVTYN  I+G C    + EA  ++ +M EK
Sbjct: 394 TLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK 453

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  S++T+I GF  K E DRA
Sbjct: 454 GLAPDVVSYSTIISGFCRKGELDRA 478



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN MCK R ++ A++       +G+  +   Y++LI+G      L EA  + ++M
Sbjct: 356 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G +  +VTYN  IH +   +    A+ ++Q +       ++  YS +I G CR G  
Sbjct: 416 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGEL 475

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +   ++ EKG+ P  VTY+ LI GLC+   + EA  L  +M + G  PD  ++ T+
Sbjct: 476 DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTL 535

Query: 187 IQGFLVKNETDRA 199
           I  + V+ + ++A
Sbjct: 536 INAYCVEGDLNKA 548



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I+  +  +V+ Y+ LI G C+   L++ +  F +M   G    +VTYN LI D + K GR
Sbjct: 206 IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI-DAYCKMGR 264

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  LL+++     + N+  Y+++I+GLCR G  +EA + L+++  KG  P  VTYN 
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+NG CK+G   +A  +  +M   G  P   ++  +I         +RA  F  +
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 379



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++   R   N + Y I I G C + E+   +       + G   +V  Y++LI+  C   
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  L   M ++G+   L++YN +I+    +     A  +L+ +    +  +   Y+
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 323

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C+ G + +A     ++   G+ P VVTY  LIN +CK   +  A +   QM+ +
Sbjct: 324 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR 383

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++ T+I GF
Sbjct: 384 GLRPNERTYTTLIDGF 399



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE  F  +   Y   I+G C +  ++ A       ++KG+  DV  YS++I+G C   
Sbjct: 414 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKG 473

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ++  +MV +G++ + VTY+ LI    E +    A  L Q +       +   Y+
Sbjct: 474 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 533

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G   +A    D++  KG +P  VTY++LINGL K+    EA +LL ++  +
Sbjct: 534 TLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYE 593

Query: 175 GCFPDSTSFNTVIQ 188
              P   +++T+I+
Sbjct: 594 ESVPSDVTYDTLIE 607



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I+G C+  E+D A       ++KG+  D   YSSLI GLC   
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 508

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA +L  +M+  G+  +  TY  LI+    +     A+ L   +    +  +   YS
Sbjct: 509 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 568

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+GL +  R  EA++ L +L  +  VP  VTY+ LI                G C KG
Sbjct: 569 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 628

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           ++ EAD++   M E+   P    +N +I G
Sbjct: 629 LMHEADRVFESMVERNHKPGEAVYNVIIHG 658



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 87/180 (48%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++   + G    V  Y++ I+G C   R++EA+ +  +MV +G+  ++V+Y+ +I   
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             K     A  + Q +       +   YS +I GLC + R  EA     ++ + GL P  
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            TY  LIN  C +G + +A  L  +M  KG  PD+ +++ +I G   +  T  A   L K
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 589



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I G+C++R +  A       +  G+  D F Y++LIN  C   
Sbjct: 484 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 543

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALL------QTLERD-KY 106
            L +A+ L D+M+ +G   + VTY+ LI +   KQ R   A  LL      +++  D  Y
Sbjct: 544 DLNKALHLHDEMIHKGFLPDAVTYSVLI-NGLNKQARTREAKRLLFKLIYEESVPSDVTY 602

Query: 107 EL------NIEVYSLV--IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +       NIE  S+V  I G C  G   EA +  + + E+   PG   YN++I+G C+ 
Sbjct: 603 DTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRG 662

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           G + +A  L  +M   G  P + +  T+I+   
Sbjct: 663 GNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 695



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG--RFSAMALLQ 99
           V+  ++      N + +AV   +   + G    +++YN ++      +G  + SA  + +
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYR 203

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + R +   N+  Y+++I G C VG  ++      ++   G +P VVTYN LI+  CK G
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            I EA  LL  M  KG  P+  S+N +I G 
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 41/153 (26%)

Query: 93  SAMALLQTLERDKYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV--- 146
           S  ++ Q L +D Y +   +  V+ L++     +   ++A   ++     G +PGV+   
Sbjct: 123 SGSSIFQCL-KDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYN 181

Query: 147 ----------------------------------TYNILINGLCKKGMIMEADKLLVQMK 172
                                             TYNILI G C  G + +      +M+
Sbjct: 182 SVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEME 241

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC P+  ++NT+I  +      D A   LK 
Sbjct: 242 RNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKS 274


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 119/213 (55%), Gaps = 12/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTF 53
           DLT    K N  V+ I +   CK  ++DSA +        +    ++  YS+L++GLC  
Sbjct: 226 DLTR---KPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRN 282

Query: 54  NRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            R+KEA +LF++MV++  I  + +TYN LI+          A  ++Q ++ +    N+  
Sbjct: 283 GRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYN 342

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS ++DGLC+VG+ E+A+  L ++   GL P  VTY  LIN LC+ G   EA +LL +MK
Sbjct: 343 YSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMK 402

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E GC  DS +FN ++ G   + + + A   ++K
Sbjct: 403 ENGCQADSVTFNVLLGGLCREGKFEEALDMVEK 435



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 104/199 (52%), Gaps = 12/199 (6%)

Query: 1   FDLTEQRFKGNFHV-----YGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLIN 48
           FDL E+    +  V     Y + ING C+  + D A      +K   C  +V+ YS+L++
Sbjct: 289 FDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVD 348

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           GLC   +L++A  +  ++   G+  + VTY  LI+          A+ LL+ ++ +  + 
Sbjct: 349 GLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQA 408

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   +++++ GLCR G++EEA   +++L ++G+     +Y I++N L +K  +  A +LL
Sbjct: 409 DSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELL 468

Query: 169 VQMKEKGCFPDSTSFNTVI 187
             M  +G  P   + N ++
Sbjct: 469 GLMLRRGFQPHYATSNELL 487



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 9/185 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IK-KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ++G+CK+ +++ A      IK  G+  D   Y+SLIN LC   +  EA+EL 
Sbjct: 339 NVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELL 398

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M   G  A+ VT+N L+     ++G+F  A+ +++ L +    LN   Y +V++ L +
Sbjct: 399 EEMKENGCQADSVTFNVLL-GGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQ 457

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
               + A++ L  +  +G  P   T N L+  LCK GM+ +A   L  + E G  P   +
Sbjct: 458 KCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLET 517

Query: 183 FNTVI 187
           +  +I
Sbjct: 518 WEVLI 522


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 3/179 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM  +REI    ++G+  +   Y++LI+G C  + L  A +LF +M++ G+  + +T N 
Sbjct: 451 GMQLLREIS---RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           L++   E +    A+ L + ++  K +L+   Y+++I G+C+  + +EA      L   G
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P V TYN++I+G C K  I +A+ L  +MK+ G  PD++++NT+I+G L   E D++
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626



 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 19  INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+C   ++ E    ++  + KG+ +DV  Y +++NG+C     K A+ L  KM    I
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 292

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++V Y+ +I D   K G  S A  L   +       N+  Y+ +IDG C  GRW +A+
Sbjct: 293 KPDVVIYSAII-DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 351

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L  + E+ + P V+T+N LI+   K+G + EA+KL  +M  +  FPD+ ++N++I GF
Sbjct: 352 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411

Query: 191 LVKNETDRA 199
              N  D A
Sbjct: 412 CKHNRFDDA 420



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 91/161 (56%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+   V  +++LINGLC   R+ EA  L +KMV +G+  ++VTY  +++   + 
Sbjct: 215 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               SA+ LL  +E    + ++ +YS +ID LC+ G   +A+    ++ EKG+ P V TY
Sbjct: 275 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 334

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           N +I+G C  G   +A +LL  M E+   PD  +FN +I  
Sbjct: 335 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 375



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N + + I I   C   ++  ++       K G   DV  +++L++GLC  +R+ E
Sbjct: 135 RRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISE 194

Query: 59  A---------------VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           A               V LFD+MV  G+T  ++T+N LI+    +     A AL+  +  
Sbjct: 195 ALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVG 254

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
               +++  Y  +++G+C++G  + A   L ++ E  + P VV Y+ +I+ LCK G   +
Sbjct: 255 KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD 314

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  L  +M EKG  P+  ++N +I GF
Sbjct: 315 AQYLFSEMLEKGIAPNVFTYNCMIDGF 341



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 11/195 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK      A       ++KGI  +VF Y+ +I+G C+F R
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A  L   M+ + I  +++T+N LI  + ++   F A  L   +       +   Y+ 
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+  R+++A+   D ++     P VVT+N +I+  C+   + E  +LL ++  +G
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462

Query: 176 CFPDSTSFNTVIQGF 190
              ++T++NT+I GF
Sbjct: 463 LVANTTTYNTLIHGF 477



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 20/170 (11%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I L+++ ++ LI   C  ++L  ++  F K+   G   ++VT+N L+H    +     A+
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           AL   +        +E   L            EA    DQ+ E GL P V+T+N LINGL
Sbjct: 197 ALFGYM--------VETGFL------------EAVALFDQMVEIGLTPVVITFNTLINGL 236

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C +G ++EA  L+ +M  KG   D  ++ T++ G     +T  A + L K
Sbjct: 237 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G   F  L +A++ FD MV        V  N +I           A++L + +E  +
Sbjct: 77  LKSGSHYFKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRR 136

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI---- 161
             LNI  ++++I   C   +   +     +L++ G  P VVT+N L++GLC +  I    
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196

Query: 162 -----------MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                      +EA  L  QM E G  P   +FNT+I G  ++     A++ + K
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNK 251



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I + G C+  +++ A++         I LD   Y+ +I+G+C  +++ EA +LF  +   
Sbjct: 507 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  ++ TYN +I     K     A  L   ++ + +E +   Y+ +I G  + G  +++
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + + ++   G      T  +    +C+
Sbjct: 627 IELISEMRSNGFSGDAFTIKMAEEIICR 654


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 109/196 (55%), Gaps = 13/196 (6%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN +C +  I+  +       ++G   DV  +++LI GLC  +R+ EA +LF +M   
Sbjct: 131 ILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKL 190

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL------NIEVYSLVIDGLCRV 123
           G T  +VTY  LI           A+   Q +  D          N+  YS++IDGLC+V
Sbjct: 191 GCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKV 250

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G WEEA    +++ ++G+ P VVT+++LI+ LCK+G +++A KLL  M + G  P+  ++
Sbjct: 251 GNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTY 310

Query: 184 NTVIQGFLVKNETDRA 199
            ++I+GF +  + + A
Sbjct: 311 TSLIKGFCLVGDLNSA 326



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +++SA         KG   DV  Y+ LING C   +++EA++LF
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365

Query: 64  DKMVAQGITAELVTYNPLIH----------------------------------DNWEKQ 89
           ++M+  G+  ++ T   L+                                   D   K 
Sbjct: 366 NEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKN 425

Query: 90  GR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G  F AM L   LE    +L+IE +  +IDGLC+ G+ E A +  ++L E+G+ P  + Y
Sbjct: 426 GYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAY 485

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +I+G CKKG + +A+ L  +M+E GC PD  +++ +++GF   N+ ++    L +
Sbjct: 486 SSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHR 542



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 15/208 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICL-------------DVFVYSSLINGLCTFNRLK 57
           N   YG  I G+C +  I+ A+K    +             +V  YS +I+GLC     +
Sbjct: 195 NVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWE 254

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLV 116
           EA+ LF++MV QG+   +VT++ LI D   K+G+   A  LL+ + +     N+  Y+ +
Sbjct: 255 EAICLFNEMVDQGVQPNVVTFSVLI-DMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSL 313

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I G C VG    A++    +  KG  P V++YN+LING CK   + EA KL  +M   G 
Sbjct: 314 IKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGM 373

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +PD  +   +++   +  + D A    +
Sbjct: 374 WPDVKTSGVLLKALFLAGKVDDAKELFR 401



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 77/274 (28%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y I I+G+CK+   + AI        +G+  +V  +S LI+ LC   ++ +A +
Sbjct: 234 RPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKK 293

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L + M+  GI   L TY  LI          SA  L  ++    YE ++  Y+++I+G C
Sbjct: 294 LLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYC 353

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNIL------------------------------ 151
           +  + EEA K  +++   G+ P V T  +L                              
Sbjct: 354 KTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLC 413

Query: 152 -----INGLCKKGMIMEADKLLVQMK---------------------------------- 172
                ++GLCK G I EA KL  +++                                  
Sbjct: 414 ICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKL 473

Query: 173 -EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            E+G  PD+ +++++I GF  K + D+A+   +K
Sbjct: 474 YEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQK 507



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            +F ++ L+ GL       +   L+ +M   G+  +L+T N                   
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLN------------------- 130

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                           ++I+ LC V R  E    +  +  +G +P VVT+  LI GLC +
Sbjct: 131 ----------------ILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVE 174

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             I+EA KL ++M++ GC P+  ++ T+I+G 
Sbjct: 175 HRIIEATKLFMRMQKLGCTPNVVTYGTLIKGL 206



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 43/186 (23%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK   I  A+K         + LD+  +  LI+GLC   +L+ A ELF+K+  +
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI  + + Y+ +IH                                   G C+ G+ ++A
Sbjct: 477 GIQPDAMAYSSMIH-----------------------------------GFCKKGQVDKA 501

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++ E G  P ++TY+IL+ G  +   + +  +LL +M EK  +PD   +  +++ 
Sbjct: 502 NILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIY-AIVED 560

Query: 190 FLVKNE 195
            + K+E
Sbjct: 561 MVCKDE 566



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L     K +   +G  I+G+CK  ++++A        ++GI  D   YSS+I+G C   
Sbjct: 437 ELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKG 496

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-TLERDKYELNIEVY 113
           ++ +A  LF KM   G + +L+TY+ L+   +E       + LL   +E+D +  +  +Y
Sbjct: 497 QVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWP-DDGIY 555

Query: 114 SLVIDGLCRVGRWEE 128
           ++V D +C+  +++E
Sbjct: 556 AIVEDMVCKDEKYKE 570



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ ++ GL ++  + +      Q+   GL P ++T NILIN LC    I E    +  + 
Sbjct: 94  FNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIM 153

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +G  PD  +F T+I+G  V++    A+    +
Sbjct: 154 RRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMR 186


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 10/197 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK------KGICLDVFV-YSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G  K ++   A K      K  CL   V Y+++++GLC   R ++AV+L D+M
Sbjct: 79  IYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEM 138

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G +  + TYN ++    E++    A  +L+ +    Y  ++  Y+  I GLC+  R 
Sbjct: 139 RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRV 198

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK L ++    + P VV+Y  +INGLCK G +  A ++L  M  +GC PD  +++++
Sbjct: 199 DEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSL 255

Query: 187 IQGFLVKNETDRASSFL 203
           I GF    E +RA   L
Sbjct: 256 IDGFCKGGEVERAMGLL 272



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 94/174 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I K    D F ++ L+ GLC  N+L++A +L  +M   G   +   YN LI    + +  
Sbjct: 34  IDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDF 93

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A   L  + ++     +  Y+ ++DGLC+  R  +A K LD++ +KG  P + TYN++
Sbjct: 94  GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVI 153

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + GLC++  + EA K+L +M  +G FPD  ++N+ I+G    +  D A  FL +
Sbjct: 154 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 207



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 9/198 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNR 55
           L E   +G F     Y   I G+CK   +D A K      +  DV  Y+++INGLC    
Sbjct: 170 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGD 229

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L  A  + D M  +G T ++VTY+ LI D + K G    AM LL ++ +     N+  Y+
Sbjct: 230 LDSASRMLDHMSNRGCTPDVVTYSSLI-DGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 288

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++  L R+G   +A   L ++  +G  P VV+YN  I+GLCK   + +A  +  +M E+
Sbjct: 289 SLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 348

Query: 175 GCFPDSTSFNTVIQGFLV 192
           GC P+++S++ +I   L+
Sbjct: 349 GCTPNASSYSMLIVDILL 366



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 13/213 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   N + Y + + G+C+ R++D A K       +G   DV  Y+S I GLC 
Sbjct: 135 LDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 194

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            +R+ EA +   +M    +T ++V+Y  +I+   +     SA  +L  +       ++  
Sbjct: 195 CDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVT 251

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +IDG C+ G  E A   LD + + G  P +V YN L+  L + G I +A+ +LV+M+
Sbjct: 252 YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 311

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +G  PD  S+N  I G        +A +   +
Sbjct: 312 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDR 344



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 20/210 (9%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK  ++DSA +       +G   DV  YSSLI+G C    ++ A+ L D M+
Sbjct: 217 YTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 276

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G    +V YN L+     + G    A  +L  +ER  +  ++  Y+  IDGLC+  R 
Sbjct: 277 KLGCRPNMVAYNSLL-GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335

Query: 127 EEARKKLDQLSEKGLVPG----------VVTYNILINGLCKKGMIMEADKLLVQ-MKEKG 175
           ++A+   D++ E+G  P           ++ Y +L++GLCK G   EA  L  + + EK 
Sbjct: 336 KKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 395

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD   +N ++     + + D+A    K+
Sbjct: 396 CEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 425



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  + +   + I + G+C+  +++ A K        G   D  +Y++LI+G     
Sbjct: 32  EMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAK 91

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A +   +MV       +VTY  ++    + +    A+ LL  +       NI  Y+
Sbjct: 92  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYN 151

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GLC   + +EA+K L++++ +G  P VVTYN  I GLCK   + EA K L +M   
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT 211

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              PD  S+ TVI G     + D AS  L
Sbjct: 212 ---PDVVSYTTVINGLCKSGDLDSASRML 237



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 17/221 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKG----------ICLDVFVYS 44
           ++  + F  +   Y   I+G+CK   +       D  +++G          + +D+ +Y+
Sbjct: 309 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYT 368

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
            L++GLC   R  EA  LF K++ + I    V +  ++ D+  K+ +      +     +
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           K   N+  +++++ GLC   R  +A   L  + ++G +P  VTY  L++ +CK G    A
Sbjct: 429 KNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAA 488

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +L  +  + GC PD  +++ +I G + +N  + A     K
Sbjct: 489 LELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 529



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDK 65
           +Y + ++G+CK    D A       + + IC  DVF Y+ +++  C   ++ +A+++  +
Sbjct: 366 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 425

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ +     +VT+N L+H          A  +L T+  + +  +   Y  ++D +C+ G+
Sbjct: 426 MLEKN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 484

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A +  ++  + G VP VVTY+ LI GL  + M  EA  L  ++ E+   PD  +   
Sbjct: 485 SAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGL 544

Query: 186 VIQGFLVKNETDRA 199
           + +   + N+  +A
Sbjct: 545 LHRKLKLLNKPRKA 558



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 35/171 (20%)

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    + TYN L+     +     A A+ Q +     + +   +++++ GLCR  + E+A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 130 RKKLDQLSEKGLVPG-----------------------------------VVTYNILING 154
           RK L ++ E G VP                                    VVTY  +++G
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK     +A KLL +M++KGC P+  ++N +++G   + + D A   L++
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 172


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 8/201 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   I+G CK   + +A        K+G+  ++  Y+SLINGLC   +L+EA++L+DKM
Sbjct: 275 TFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM 334

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+   +VTYN LI+   +K+    A  +   + + +   N+  ++ +ID  C+ G  
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EE       + ++G++P V TYN LI GLC+K  +  A +LL +M+ KG   D  ++N +
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           I G L KN+  R +  L   M
Sbjct: 455 IDG-LCKNDKSRNAEKLLNEM 474



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 109/199 (54%), Gaps = 10/199 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLC--- 51
           ++ ++R   N + + I ING+C   K+ + + AI+     GI  +V  Y++L++G C   
Sbjct: 190 EMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRG 249

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           +  ++ +A     +M+A  I    VT+N LI    + +   +A    + +++   + NI 
Sbjct: 250 SAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIV 309

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC  G+ EEA    D++   GL P +VTYN LING CKK M+ EA K+   +
Sbjct: 310 TYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDV 369

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            ++   P+  +FNT+I  +
Sbjct: 370 SKQELVPNVITFNTMIDAY 388



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK+ I  ++  ++  INGLC   +L +A +  + M A GI+  +VTYN L+ D + K+G 
Sbjct: 192 IKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLV-DGYCKRGS 250

Query: 92  ----FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
               + A A ++ +  +K   N   ++ +IDG C+      A+K  +++ ++GL P +VT
Sbjct: 251 AGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVT 310

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           YN LINGLC  G + EA  L  +M   G  P+  ++N +I GF  K     A+
Sbjct: 311 YNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEAT 363



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ING CK        +  D   K+ +  +V  ++++I+  C    ++E  
Sbjct: 339 LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L   M+ +GI   + TYN LI     KQ   +A  LL  +E    + ++  Y+++IDGL
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  +   A K L+++   GL P  VTYN L++G C +G +  A  +  +M+++   P+ 
Sbjct: 459 CKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNV 518

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N +I+G+   N+ + A+  L
Sbjct: 519 VTYNVLIKGYCKINKLEAANGLL 541



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+++Q    N   +   I+  CK            S + +GI  +V  Y+ LI GLC   
Sbjct: 368 DVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQ 427

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+ A EL ++M  +G+  ++VTYN LI    +     +A  LL  +     + N   Y+
Sbjct: 428 DLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYN 487

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C  G+ + A     ++ ++   P VVTYN+LI G CK   +  A+ LL +M EK
Sbjct: 488 TLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEK 547

Query: 175 GCFPDSTSFNTV 186
           G  P+ T+++ V
Sbjct: 548 GLNPNRTTYDIV 559



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C+ +++ +A +       KG+  DV  Y+ LI+GLC  ++ + A +L 
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCR 122
           ++M   G+    VTYN L+ D +  +G+  A   ++T +E+++ + N+  Y+++I G C+
Sbjct: 472 NEMFNLGLKPNHVTYNTLM-DGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCK 530

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           + + E A   L+++ EKGL P   TY+I+   + +KG
Sbjct: 531 INKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD---RASSFL 203
           T+NI INGLC+ G + +A+  +  MK  G  P+  ++NT++ G+  +       +A +F+
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFM 261

Query: 204 KK 205
           K+
Sbjct: 262 KE 263


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + + G+C  R  D A+         G+  DV  Y +LI GLC    L  A+E
Sbjct: 112 RPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALE 171

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
           L  +M   G+   ++ Y+ L+   + + GR+  ++ + + + R   E ++ +++  ID L
Sbjct: 172 LLGEMCGSGVHPNVIVYSCLLR-GYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ GR  +A K  D + ++GL P VVTYN+LIN LCK+G + EA  L  +M +KG  PD 
Sbjct: 231 CKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDV 290

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I G     E D A   L++
Sbjct: 291 VTYNTLIAGLSGVLEMDGAMGLLEE 315



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 4/189 (2%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           RI    K+++I   +++G+  +V  Y+ LIN LC    ++EA+ L ++M  +G+  ++VT
Sbjct: 235 RIGKAVKVKDI--MVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVT 292

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           YN LI           AM LL+ + +     E ++  ++ VI GLC++GR  +A    + 
Sbjct: 293 YNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREM 352

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++E+G +  +VTYN LI G  +   +  A  L+ ++   G  PDS +++ +I GF    E
Sbjct: 353 MAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWE 412

Query: 196 TDRASSFLK 204
            DRA  FL+
Sbjct: 413 VDRAEMFLR 421



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 8/195 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G  ++ +++ A       I  G+  D F YS LING      +  A    
Sbjct: 361 NLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFL 420

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +GI AEL  Y PL+    +      AM L   ++ +   L+   YS ++ G C+ 
Sbjct: 421 RTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMN-CGLDAVAYSTMMYGACKS 479

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A++ L  + ++GL P  VTY+ILIN   K G + EA+++L QM   G  PD   F
Sbjct: 480 GDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVF 539

Query: 184 NTVIQGFLVKNETDR 198
           +++I+G+  + + ++
Sbjct: 540 DSLIKGYSAEGQINK 554



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 46/242 (19%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + +   YG  I G+C   E+D A++        G+  +V VYS L+ G C   R ++  +
Sbjct: 147 RADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSK 206

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F++M   G+  +++ +   I D+  K+GR   A+ +   + +   E N+  Y+++I+ L
Sbjct: 207 VFEEMSRLGVEPDVIMFTGFI-DDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCL 265

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILI---------------------------- 152
           C+ G   EA    +++ +KG+ P VVTYN LI                            
Sbjct: 266 CKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEP 325

Query: 153 ---------NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                    +GLCK G + +A  +   M E+GC  +  ++N +I GFL  ++ + A + +
Sbjct: 326 DVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLM 385

Query: 204 KK 205
            +
Sbjct: 386 SE 387



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 10/195 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L     + +   Y I ING  K+ E+D A        ++GI  ++F Y  L+  LC   
Sbjct: 387 ELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLG 446

Query: 55  RLKEAVELFDKM-VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +++A+ LF++M +  G+ A  V Y+ +++   +     +A  LLQ +  +    +   Y
Sbjct: 447 MMEQAMVLFNEMDMNCGLDA--VAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTY 504

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++I+   ++G  EEA + L Q++  G VP V  ++ LI G   +G I +   L+ +M+ 
Sbjct: 505 SILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRA 564

Query: 174 KGCFPDSTSFNTVIQ 188
           K    D     T+++
Sbjct: 565 KNVAIDPKFICTLVR 579



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 43/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIK------KGICL---DVFVYSSLINGLCTFNRLKEAVELFDK 65
           Y   I G+  + E+D A+       +G  L   DV  ++S+I+GLC   R+++A+ + + 
Sbjct: 293 YNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREM 352

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G    LVTYN LI           AM L+  L     E +   YS++I+G  ++  
Sbjct: 353 MAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWE 412

Query: 126 WEEARKKLDQLSEKGL-------VP---------------------------GVVTYNIL 151
            + A   L  ++++G+       +P                             V Y+ +
Sbjct: 413 VDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTM 472

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G CK G I  A +LL  M ++G  PD+ +++ +I  F    + + A   LK+
Sbjct: 473 MYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQ 526



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 74  ELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYEL---NIEVYSLVIDGLCRVGRWEEA 129
           + V+YN ++     + G    A++LL  + R+ +     N   Y++V+ GLC   R +EA
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L  +   G+   VVTY  LI GLC    +  A +LL +M   G  P+   ++ +++G
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRG 194

Query: 190 F 190
           +
Sbjct: 195 Y 195



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSE------KGLVPGVVTYNILINGLCKKGMIMEADK 166
           Y++V+  LCR  R  + R+ L  L++          P  V+Y +++ GLC      EA  
Sbjct: 79  YNIVLAALCR--RGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVA 136

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           LL  M+  G   D  ++ T+I+G     E D A   L
Sbjct: 137 LLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELL 173


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK   +  A+       ++G+   V  Y++LI  L    +++E  +LFD+ 
Sbjct: 289 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 348

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  +LV YN LI+ +        A  ++  +E+ +   +   Y+ ++ GLC +GR 
Sbjct: 349 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 408

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK +D+++E+G+ P +VTYN LI+G   KG + +A ++  +M  KG  P   ++N +
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 468

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A + +K+
Sbjct: 469 IQGLCKNGQGDDAENMVKE 487



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 16/212 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCT 52
            +L  Q  + N   Y   I G C    + +A+        + GI  + + Y ++I+G C 
Sbjct: 134 LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 193

Query: 53  FNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELN 109
             R+ EAV++FD+M+ +G +  E V YN LI   +  QG+     L   + +ER    + 
Sbjct: 194 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALI-GGYCDQGKLDTALLYRDRMVERG-VAMT 251

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+L++  L   GR  EA + ++++  KGL P V TYNILING CK+G + +A ++  
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 311

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVK---NETDR 198
            M  +G      ++  +I     K    ETD+
Sbjct: 312 NMSRRGVRATVVTYTALIYALSKKGQVQETDK 343



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 1   FD--LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC 51
           FD  LT+   K    +Y   I G C   ++D+A       +++G+ + V  Y+ L++ L 
Sbjct: 204 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 263

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R  EA EL ++M  +G+  ++ TYN LI+ + ++     A+ + + + R      + 
Sbjct: 264 MDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVV 323

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  L + G+ +E  K  D+   +G+ P +V YN LIN     G I  A +++ +M
Sbjct: 324 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 383

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++K   PD  ++NT+++G  +    D A   +
Sbjct: 384 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 415



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD   +R  + +  +Y   IN       ID A        KK I  D   Y++L+ GLC 
Sbjct: 345 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 404

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA +L D+M  +GI  +LVTYN LI     K     A+ +   +    +   +  
Sbjct: 405 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 464

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Y+ +I GLC+ G+ ++A   + ++ E G+ P   TY  LI GL  +
Sbjct: 465 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 510



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            ++ ++  LC+  +   A+EL  +M         VTYN +I   +  +GR  +A+ +++ 
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA-GFCSRGRVQAALDIMRE 170

Query: 101 L-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158
           + ER     N   Y  VI G C+VGR +EA K  D++  KG V P  V YN LI G C +
Sbjct: 171 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 230

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G +  A     +M E+G      ++N ++    +
Sbjct: 231 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 264


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK   +  A+       ++G+   V  Y+SLI  L    +++E  +LFD+ 
Sbjct: 216 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 275

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  +LV YN LI+ +        A  ++  +E+ +   +   Y+ ++ GLC +GR 
Sbjct: 276 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 335

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK +D+++++G+ P +VTYN LI+G   KG + +A ++  +M  KG  P   ++N +
Sbjct: 336 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 395

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A + +K+
Sbjct: 396 IQGLCKNGQGDDAENMVKE 414



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 16/212 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCT 52
            +L  Q  + N   Y   I G C    + +A+        + GI  + + Y ++I+G C 
Sbjct: 61  LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 120

Query: 53  FNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELN 109
             R+ EAV++FD+M+ +G +  E V YN LI   +  QG+     L   + +ER    + 
Sbjct: 121 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALI-GGYCDQGKLDTALLYRDRMVER-GVAMT 178

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+L++  L   GR  EA + ++++  KGL P V TYNILING CK+G + +A ++  
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 238

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVK---NETDR 198
            M  +G      ++ ++I     K    ETD+
Sbjct: 239 NMSRRGVRATVVTYTSLIYALSKKGQVQETDK 270



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           LT+   K    +Y   I G C   ++D+A       +++G+ + V  Y+ L++ L    R
Sbjct: 135 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 194

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA EL ++M  +G+  ++ TYN LI+ + ++     A+ + + + R      +  Y+ 
Sbjct: 195 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTS 254

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  L + G+ +E  K  D+   +G+ P +V YN LIN     G I  A +++ +M++K 
Sbjct: 255 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 314

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  ++NT+++G  +    D A   +
Sbjct: 315 IAPDDVTYNTLMRGLCLLGRVDEARKLI 342



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD   +R  + +  +Y   IN       ID A        KK I  D   Y++L+ GLC 
Sbjct: 272 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 331

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA +L D+M  +GI  +LVTYN LI     K     A+ +   +    +   +  
Sbjct: 332 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 391

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           Y+ +I GLC+ G+ ++A   + ++ E G+ P   TY  LI GL
Sbjct: 392 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            ++ ++  LC+  +   A+EL  +M         VTYN +I   +  +GR  +A+ +++ 
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA-GFCSRGRVQAALDIMRE 97

Query: 101 L-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158
           + ER     N   Y  VI G C+VGR +EA K  D++  KG V P  V YN LI G C +
Sbjct: 98  MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 157

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A     +M E+G      ++N ++    +      A   +++
Sbjct: 158 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 204


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC   RL +A EL ++M
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +L T+  LIH          A+    T+   +   +I  Y+ +IDG+CR G  
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDL 455

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +  D +  + + P  VTY+ILI+  C+KG +  A   L +M  KG  P+  ++N++
Sbjct: 456 GKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSI 515

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G+       +   FL K
Sbjct: 516 IKGYCRSGNVSKGQQFLPK 534



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   +   I+G C+   I+ A++       + +  D+  Y++LI+G+C   
Sbjct: 394 EMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQG 453

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L +A EL+D M ++ I    VTY+ LI  + EK    +A A L  +       NI  Y+
Sbjct: 454 DLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYN 513

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G   + ++ L ++    ++P ++TYN LI+G  K+G + EA  LL  M+ +
Sbjct: 514 SIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENE 573

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+ ++N +I GF V      A    KK
Sbjct: 574 NVQPDAVTYNMIISGFSVHGNMQEADWVYKK 604



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 97/171 (56%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D  +Y+ +I G C    + EA+ + D+MVA G   ++VTYN L++   +++    A
Sbjct: 329 GLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDA 388

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  ++      ++  ++ +I G CR G  E+A +  D +S++ L P +VTYN LI+G
Sbjct: 389 EELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDG 448

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +C++G + +A++L   M  +  FP+  +++ +I     K + D A +FL +
Sbjct: 449 MCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDE 499



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 8/207 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +++QR + +   Y   I+GMC+  ++       D    + I  +   YS LI+  C 
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  A    D+MV +GI   ++TYN +I               L  +  DK   ++  
Sbjct: 487 KGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT 546

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G  + G+  EA   L  +  + + P  VTYN++I+G    G + EAD +  +M 
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMG 606

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +G  PD  ++ ++I G +V   + ++
Sbjct: 607 ARGIEPDRYTYMSMINGHVVAGNSKKS 633



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 89/178 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           IDS + KGI   +  Y+S++ GL    R  +A E+F  M A G+  ++ ++N LI     
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+   + +   +   ++  +S +I    R G  + A + L ++ E GL+P  V 
Sbjct: 277 AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVI 336

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y ++I G C+ G+++EA ++  +M   GC PD  ++NT++ G   +     A   L +
Sbjct: 337 YTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 89/168 (52%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++ +  + +++  C   +  E   +  +M  + +  ++VT+N ++   +      +AMAL
Sbjct: 157 VNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++     +  +  Y+ V+ GL R GRW++AR+    +   G+ P V ++N+LI G C+
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA +   +M+ +   PD  SF+ +I  F  + E D A+ +L++
Sbjct: 277 AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  ++D+A       + KGI  ++  Y+S+I G C   
Sbjct: 464 DMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSG 523

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + +  +   KM    +  +L+TYN LIH  + K+G+   A  LL+ +E +  + +   Y
Sbjct: 524 NVSKGQQFLPKMRHDKVMPDLITYNTLIH-GYVKEGKMHEAFNLLKIMENENVQPDAVTY 582

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G    G  +EA     ++  +G+ P   TY  +ING    G   ++ +L  +M +
Sbjct: 583 NMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQ 642

Query: 174 KGCFPD 179
           KG  PD
Sbjct: 643 KGLAPD 648



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L    E + Y LNI V+S      C+  ++ E    + ++ ++ + P VVT+N++++ 
Sbjct: 149 LVLSSNSEVNTYTLNIMVHSY-----CKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDA 203

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             + G +  A  L+  M  KG  P   ++N+V++G L     D+A    +
Sbjct: 204 RFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFR 253


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C +  +  A         K I  DV+ ++ LI+ L    ++ EA+ LF
Sbjct: 267 NVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLF 326

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  + +   +VTY  LI    +      A+AL + ++    + ++  Y++++D LC+ 
Sbjct: 327 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 386

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR E A++    L  KG    V TYN++INGLCK G+  +   L  +M+ KGC PD+ +F
Sbjct: 387 GRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITF 446

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I     K+E D+A  FL++
Sbjct: 447 KTIICALFEKDENDKAEKFLRE 468



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 13/209 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I IN  C +  I  A       +K+G   D    ++LI GLC    +K A+   
Sbjct: 127 NLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFH 186

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCR 122
           DK+VAQG   + V+Y  LI +   K G   A+A LL+ LE    + ++ +Y+ +I  LC+
Sbjct: 187 DKVVAQGFQLDQVSYGTLI-NGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCK 245

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R  +A     ++  KG+ P V TYN LI G C  G + EA  LL +MK K   PD  +
Sbjct: 246 NKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYT 305

Query: 183 FNTVIQGFLVKNETDRASSFLK----KNM 207
           FN +I     + + D A S  +    KNM
Sbjct: 306 FNILIDALGKEGKIDEAISLFEEMKHKNM 334



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + K    + + + I I+ + K  +ID AI        K +  ++  Y+SLI+GLC 
Sbjct: 291 LNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCK 350

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
            + L+ A+ L  KM  QGI  ++ +Y  L+ D   K GR  +A    Q L    Y LN+ 
Sbjct: 351 NHHLERAIALCKKMKEQGIQPDVYSYTILL-DALCKGGRLENAKQFFQHLLVKGYHLNVR 409

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+GLC+ G + +      ++  KG +P  +T+  +I  L +K    +A+K L +M
Sbjct: 410 TYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREM 469

Query: 172 KEKG 175
             +G
Sbjct: 470 IARG 473



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q    G+ P + T NILIN  C    I  A  +   + ++G  PD+ + NT+I+G     
Sbjct: 118 QFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCG 177

Query: 195 ETDRASSFLKK 205
           E  RA  F  K
Sbjct: 178 EIKRALYFHDK 188


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 9/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEA 59
           +K N  ++ I +   C+  +IDSA +        K    +V  YS+L++GLC   RLKEA
Sbjct: 269 YKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEA 328

Query: 60  VELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            ELF++MV++  I  + +TYN LI+    +     A  +++ ++ +    N+  YS ++D
Sbjct: 329 FELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVD 388

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC+ G+ ++A+  L ++   GL P  +TY  LIN   + G I EA +LL +MKE  C  
Sbjct: 389 GLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQA 448

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ +FN ++ G   +   D A   ++K
Sbjct: 449 DTVTFNVILGGLCREGRFDEALDMIEK 475



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING C+  + D A          G C +VF YS+L++GLC   +L++A  +  +M
Sbjct: 347 TYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEM 406

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G+  + +TY  LI + + + G+   A+ LL  ++ +  + +   +++++ GLCR GR
Sbjct: 407 KSSGLKPDAITYTSLI-NFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGR 465

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++EA   +++L ++G+     +Y I++N L +   + +A+KLL  M  +G  P   + N 
Sbjct: 466 FDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNE 525

Query: 186 VI 187
           ++
Sbjct: 526 LL 527



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 44/200 (22%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G+CK  ++  A          G+  D   Y+SLIN      ++ EA+EL  +M 
Sbjct: 383 YSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMK 442

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                A+ VT+N +I     ++GRF  A+ +++ L +    LN   Y +V++ L +    
Sbjct: 443 ENDCQADTVTFN-VILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCEL 501

Query: 127 EEARKKLDQLSEKGLVPGVVTYN-----------------------------------IL 151
            +A K L  +  +G VP   T N                                   +L
Sbjct: 502 RKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELL 561

Query: 152 INGLCKKGMIMEADKLLVQM 171
           I+ +C+   ++   +LL ++
Sbjct: 562 IDLICRDRKLLYVFELLDEL 581


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I+G  KI+ +D A++       +G C DV  Y++LING C   
Sbjct: 547 EMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVK 606

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R+ EA ++ D+MVA+G+   +VTYN LI D W K G    A   L  +   + E N+  Y
Sbjct: 607 RVSEAHDILDEMVAKGLVPSVVTYNLLI-DGWCKNGDIDQAFHCLSRMVGKEREPNVITY 665

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDGLC  GR ++A    +++  KG  P  +++  LI+GLCK G    A     +M E
Sbjct: 666 TTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGE 725

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   PD+  +  +I  F+       A   LK+
Sbjct: 726 RET-PDTIVYVALITSFISNKNPTLAFEILKE 756



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 81/157 (51%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LC   R  EA     +MV +G   ++V Y+  I    + +    A+ + + + 
Sbjct: 525 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 584

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              Y  ++  Y+ +I+G C+V R  EA   LD++  KGLVP VVTYN+LI+G CK G I 
Sbjct: 585 ARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDID 644

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +A   L +M  K   P+  ++ T+I G       D A
Sbjct: 645 QAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDA 681



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 42/233 (18%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + I I+G+C   ++D A       ++ G   +V +Y++LI+ L   NRL+E   L  +M 
Sbjct: 420 FSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMK 479

Query: 68  AQGITAELVTYNPLI-----------------------HDNW------------EKQGRF 92
             G      T+N +                        H+ W            +++   
Sbjct: 480 GSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSA 539

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A   L  + R+ +  +I  YS  IDG  ++   ++A +    +  +G  P VV YN LI
Sbjct: 540 EACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLI 599

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           NG CK   + EA  +L +M  KG  P   ++N +I G+    + D+A   L +
Sbjct: 600 NGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 652



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           G+  +  +R+  MC     DS  +     D +  +S++   C   +  +A+ +F+++  +
Sbjct: 173 GSIDLVEMRLKEMC-----DSGWEP----DKYTLTSVLQAYCNSRKFDKALSVFNEIYGR 223

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G     V    ++   + K G    A  L++ +E     LN + + ++I G  R  R ++
Sbjct: 224 GWVDGHVL--SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDK 281

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           A +   ++ + G  P V  Y+ LI GLC K  I +A  LL +MKE G  PD
Sbjct: 282 ALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 332



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 36/216 (16%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT-----FNR 55
           F  +  VY   I G+C  +EI+ A+       + GI  D+ + S LI   C+     +  
Sbjct: 294 FAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-PYCSEEVDIYRL 352

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--- 112
           ++E +E  D        A L+ YN +++     +    A  LL  +  D Y  N EV   
Sbjct: 353 IEERLEDLDT------EAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKF 406

Query: 113 -------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
                        +S+VIDGLC  G+ + A      +   G    V+ YN LI+ L    
Sbjct: 407 FMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSN 466

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
            + E   LL +MK  G  P   + N++  G L + E
Sbjct: 467 RLEECYLLLKEMKGSGFRPTQFTHNSIF-GCLCRRE 501



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 25/218 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I+G  +   +D A+       K G   DV VY +LI GLC    +++A+ L 
Sbjct: 262 NEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLL 321

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++   + LI    E+   +  +   + LE    E  + +Y+ V++GL   
Sbjct: 322 SEMKELGIDPDIQILSKLIPYCSEEVDIYRLIE--ERLEDLDTEAMLLLYNSVLNGLVNG 379

Query: 124 GRWEEARKKLDQLS----------------EKGLVPGVVTYNILINGLCKKGMIMEADKL 167
              ++A   L  ++                ++ + P   +++I+I+GLC  G +  A  L
Sbjct: 380 KSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSL 439

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              M   GC  +   +N +I      N  +     LK+
Sbjct: 440 FRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKE 477



 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +   C  R+ D A+        +G  +D  V S L+        + +A EL ++M   GI
Sbjct: 201 LQAYCNSRKFDKALSVFNEIYGRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGI 259

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
                T+  LIH  + +Q R   A+ L + +++  +  ++ VY  +I GLC     E+A 
Sbjct: 260 RLNEKTFCVLIH-GFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL 318

Query: 131 KKLDQLSEKGLVPGVVTYNILI 152
             L ++ E G+ P +   + LI
Sbjct: 319 HLLSEMKELGIDPDIQILSKLI 340



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 52/95 (54%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            V S+++    + G  ++A + ++++ + G+     T+ +LI+G  ++  + +A +L  +
Sbjct: 229 HVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKK 288

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M++ G  PD + ++ +I G   K E ++A   L +
Sbjct: 289 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSE 323


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CK  +++ A+K        G   DV  Y +L+ GL    ++ +A +LF  M 
Sbjct: 385 YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK 444

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  +L  Y   ++   +    F AM L   L+    +L+IE ++ +IDGLC+ G+ E
Sbjct: 445 VYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 504

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  ++L ++ L P VVTYNI+I+  C+ G +++A+ L  +M++ GC PD  ++ T+I
Sbjct: 505 TAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLI 564

Query: 188 QGFLVKNETDRASSFL 203
           +GF    + ++    L
Sbjct: 565 RGFFESKKLEKVVELL 580



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 23/204 (11%)

Query: 14  VYGIRINGMCKIREIDSAIK-----------KGICLD--VFVYSSLINGLCTFNRLKEAV 60
            YG  + G+C+   I  A+K            GI     V  YS +I+ LC   R  EA 
Sbjct: 203 TYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEAR 262

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +LF++M  QG+T  +++Y  LIH       WE+  R     L   +     + N+  +++
Sbjct: 263 DLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKR-----LFNEMVNQGVQPNVVTFNV 317

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+  EA+  L+ + ++G+VP ++TYN LI G C  G +  A +L V M  KG
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKG 377

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C PD   +  +I G+   ++ + A
Sbjct: 378 CEPDVICYTVLINGYCKTSKVEEA 401



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK     Y I I+ +CK R  D A         +G+   V  Y+SLI+G C   + +EA 
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDG 119
            LF++MV QG+   +VT+N LI D   K+G+   A  LL+ + +     N+  Y+ +I+G
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLI-DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 356

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C VG    AR+    +  KG  P V+ Y +LING CK   + EA KL   M + G  PD
Sbjct: 357 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 416

Query: 180 STSFNTVIQGFL 191
             ++  ++ G  
Sbjct: 417 VKTYGALLTGLF 428



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 50/232 (21%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +N +C +  +   +       ++G   D+  Y++LI GLC  +R+ +A  LF +M   
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK--YELNIEV----YSLVIDGLCR 122
           G T   +TY  L+     + G  S A+ L Q +  D   Y +N +     YS++ID LC+
Sbjct: 196 GCTPNAITYGTLM-KGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCK 254

Query: 123 -----------------------------------VGRWEEARKKLDQLSEKGLVPGVVT 147
                                               G+WEEA++  +++  +G+ P VVT
Sbjct: 255 DRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVT 314

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N+LI+ LCK+G ++EA  LL  M ++G  P+  ++N++I+GF +  + + A
Sbjct: 315 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 366



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +++SA         KG   DV  Y+ LING C  ++++EA++L+
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+  G   ++ TY  L+   ++      A  L   ++      ++ +Y + ++GLC+ 
Sbjct: 406 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 465

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA +  ++L    +   +  +N LI+GLCK G +  A +L  ++ ++   PD  ++
Sbjct: 466 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTY 525

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I  F    +  +A+   +K
Sbjct: 526 NIMIHEFCRGGQVVKANILFQK 547



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  + N   + + I+ +CK  ++  A       I++GI  ++  Y+SLI G C   
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 361

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ELF  M ++G   +++ Y  LI+   +      AM L   + +     +++ Y 
Sbjct: 362 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 421

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL + G+  +A+K    +   G+   +  Y I +NGLCK G + EA +L  ++K  
Sbjct: 422 ALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSY 481

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               D   FN +I G     + + A    +K
Sbjct: 482 NIKLDIECFNCLIDGLCKAGKLETAWELFEK 512



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D    + L+N LC  NR+ E + +   ++ +G   ++VTY  LI      + R S 
Sbjct: 126 GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLI-KGLCMEHRISK 184

Query: 95  MALLQT-LERDKYELNIEVYSLVIDGLCRVGRWEEARK-KLDQLSEKGLV-----PGVVT 147
            ALL T +++     N   Y  ++ GLCR G    A K   + L++  L      P V++
Sbjct: 185 AALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVIS 244

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y+I+I+ LCK     EA  L  +MK +G  P   S+ ++I GF    + + A
Sbjct: 245 YSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEA 296



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI  D+++Y   +NGLC    L EA+ELF+K+ +  I  ++  +N LI D   K G+  +
Sbjct: 447 GIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLI-DGLCKAGKLET 505

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L + L +++ + ++  Y+++I   CR G+  +A     ++ + G  P  +TY  LI 
Sbjct: 506 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565

Query: 154 GLCKKGMIMEADKLLVQMKEK 174
           G  +   + +  +LL  M ++
Sbjct: 566 GFFESKKLEKVVELLHMMVQR 586



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 9   KGNFHVYGIRINGMCK------IREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVE 61
            G+ ++YGI +NG+CK        E+ + +K   I LD+  ++ LI+GLC   +L+ A E
Sbjct: 449 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 508

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF+K+  + +  ++VTYN +IH+         A  L Q +E++    +   Y+ +I G  
Sbjct: 509 LFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFF 568

Query: 122 RVGRWEEARKKLDQLSEK 139
              + E+  + L  + ++
Sbjct: 569 ESKKLEKVVELLHMMVQR 586



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++GL       +   L+++M   GI+ +  T N L++           +A++  + 
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R  Y  +I  Y+ +I GLC   R  +A     ++ + G  P  +TY  L+ GLC+ G I 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 163 EADKLLVQM 171
            A KL  +M
Sbjct: 219 IALKLHQEM 227



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 88  KQGRFSAMALLQTLERDKYE---LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           K G  +A    Q      Y      +  ++ ++ GL ++  + +     +Q+   G+ P 
Sbjct: 71  KTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPD 130

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             T NIL+N LC    + E   ++  +  +G  PD  ++ T+I+G  +++   +A+
Sbjct: 131 CCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAA 186


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CK  +++ A+K        G   DV  Y +L+ GL    ++ +A +LF  M 
Sbjct: 377 YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK 436

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  +L  Y   ++   +    F AM L   L+    +L+IE ++ +IDGLC+ G+ E
Sbjct: 437 VYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 496

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  ++L ++ L P VVTYNI+I+  C+ G +++A+ L  +M++ GC PD  ++ T+I
Sbjct: 497 TAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLI 556

Query: 188 QGFLVKNETDRASSFL 203
           +GF    + ++    L
Sbjct: 557 RGFFESKKLEKVVELL 572



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 21/202 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-----------KGICLD--VFVYSSLINGLCTFNRLK 57
           N   YG  + G+C+   I  A+K            GI     V  YS +I+ LC   R  
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA +LF++M  QG+T  +++Y  L+   WE+  R     L   +     + N+  ++++I
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLM---WEEAKR-----LFNEMVNQGVQPNVVTFNVLI 311

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D LC+ G+  EA+  L+ + ++G+VP ++TYN LI G C  G +  A +L V M  KGC 
Sbjct: 312 DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCE 371

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD   +  +I G+   ++ + A
Sbjct: 372 PDVICYTVLINGYCKTSKVEEA 393



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 42/224 (18%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +N +C +  +   +       ++G   D+  Y++LI GLC  +R+ +A  LF +M   
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK--YELNIEV----YSLVIDGLCR 122
           G T   +TY  L+     + G  S A+ L Q +  D   Y +N +     YS++ID LC+
Sbjct: 196 GCTPNAITYGTLM-KGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCK 254

Query: 123 VGR---------------------------WEEARKKLDQLSEKGLVPGVVTYNILINGL 155
             R                           WEEA++  +++  +G+ P VVT+N+LI+ L
Sbjct: 255 DRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVL 314

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           CK+G ++EA  LL  M ++G  P+  ++N++I+GF +  + + A
Sbjct: 315 CKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 358



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK     Y I I+ +CK R  D A         +G+   V  Y+SL+         +EA 
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAK 289

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDG 119
            LF++MV QG+   +VT+N LI D   K+G+   A  LL+ + +     N+  Y+ +I+G
Sbjct: 290 RLFNEMVNQGVQPNVVTFNVLI-DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 348

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C VG    AR+    +  KG  P V+ Y +LING CK   + EA KL   M + G  PD
Sbjct: 349 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 408

Query: 180 STSFNTVIQGFL 191
             ++  ++ G  
Sbjct: 409 VKTYGALLTGLF 420



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +++SA         KG   DV  Y+ LING C  ++++EA++L+
Sbjct: 338 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+  G   ++ TY  L+   ++      A  L   ++      ++ +Y + ++GLC+ 
Sbjct: 398 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 457

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA +  ++L    +   +  +N LI+GLCK G +  A +L  ++ ++   PD  ++
Sbjct: 458 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTY 517

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I  F    +  +A+   +K
Sbjct: 518 NIMIHEFCRGGQVVKANILFQK 539



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  + N   + + I+ +CK  ++  A       I++GI  ++  Y+SLI G C   
Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 353

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ELF  M ++G   +++ Y  LI+   +      AM L   + +     +++ Y 
Sbjct: 354 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 413

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL + G+  +A+K    +   G+   +  Y I +NGLCK G + EA +L  ++K  
Sbjct: 414 ALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSY 473

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               D   FN +I G     + + A    +K
Sbjct: 474 NIKLDIECFNCLIDGLCKAGKLETAWELFEK 504



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI  D+++Y   +NGLC    L EA+ELF+K+ +  I  ++  +N LI D   K G+  +
Sbjct: 439 GIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLI-DGLCKAGKLET 497

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L + L +++ + ++  Y+++I   CR G+  +A     ++ + G  P  +TY  LI 
Sbjct: 498 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 557

Query: 154 GLCKKGMIMEADKLLVQMKEK 174
           G  +   + +  +LL  M ++
Sbjct: 558 GFFESKKLEKVVELLHMMVQR 578



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 9   KGNFHVYGIRINGMCK------IREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVE 61
            G+ ++YGI +NG+CK        E+ + +K   I LD+  ++ LI+GLC   +L+ A E
Sbjct: 441 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 500

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF+K+  + +  ++VTYN +IH+         A  L Q +E++    +   Y+ +I G  
Sbjct: 501 LFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFF 560

Query: 122 RVGRWEEARKKLDQLSEK 139
              + E+  + L  + ++
Sbjct: 561 ESKKLEKVVELLHMMVQR 578



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++GL       +   L+++M   GI+ +  T N L++           +A++  + 
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R  Y  +I  Y+ +I GLC   R  +A     ++ + G  P  +TY  L+ GLC+ G I 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 163 EADKLLVQM 171
            A KL  +M
Sbjct: 219 IALKLHQEM 227



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 63/133 (47%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A + F  M+    T  L ++  L+    + +       L   +       +    ++++
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           + LC V R  E    +  +  +G +P +VTY  LI GLC +  I +A  L  +M++ GC 
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 178 PDSTSFNTVIQGF 190
           P++ ++ T+++G 
Sbjct: 199 PNAITYGTLMKGL 211



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 88  KQGRFSAMALLQTLERDKYE---LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           K G  +A+   Q      Y      +  ++ ++ GL ++  + +     +Q+   G+ P 
Sbjct: 71  KTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPD 130

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             T NIL+N LC    + E   ++  +  +G  PD  ++ T+I+G  +++   +A+
Sbjct: 131 CCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAA 186


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 8/196 (4%)

Query: 15  YGIRINGMCKIREIDSAIK--KGICLDVF-----VYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK   +D A+K  + I +D F     +Y++LING C  ++  +A+ ++ +M 
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMA 502

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
               +   +TYN LIH   + +    A    + +      L++  Y  +I GLCR  + +
Sbjct: 503 ENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKID 562

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTV 186
            A    +Q+ +KGL   VV +NILI+GLC  G + EA +LL +MKEK  C P+  ++NT+
Sbjct: 563 GALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTL 622

Query: 187 IQGFLVKNETDRASSF 202
           + GF      D+A+S 
Sbjct: 623 MDGFYETGCFDKAASL 638



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 47/247 (19%)

Query: 6   QRFKGNFH-----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +R   N H      YG  I+G+C+  ++DSA       IK G+  DV +Y+SL+ G C  
Sbjct: 289 ERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHA 348

Query: 54  NRLKEAVELFDKMVAQGI-----------------------------------TAELVTY 78
            R+ EA + +D M   GI                                   + ++VT+
Sbjct: 349 GRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTF 408

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           + +IH   EK     ++ +L+       EL+   YS +I GLC+ GR ++A K  +++S 
Sbjct: 409 STMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISM 468

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
               P    YN LING C+     +A ++  QM E  C P + ++NT+I G     +   
Sbjct: 469 DSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLE 528

Query: 199 ASSFLKK 205
           AS F ++
Sbjct: 529 ASRFTRE 535



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I +  +C   ++D A+        +G+  D   YS+L++G    NRL  
Sbjct: 153 RRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDN 212

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVYSLV 116
           A+ L D+M +  +  + V YN L+   + + G F  AM + + L RD     N+  Y+++
Sbjct: 213 ALYLLDEMPSYEVQPDAVCYNALLGGCF-RNGEFEKAMRVWEQLVRDPGASPNLATYNVM 271

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC++G ++EA    +++      P ++TY  +I+GLC+   +  A ++  +M + G 
Sbjct: 272 LDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGL 331

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSF 202
            PD   +N++++GF        A  F
Sbjct: 332 VPDVVIYNSLLKGFCHAGRVGEAWKF 357



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++   FK N H+Y   ING C+  +   AI+                Y++LI+GLC   +
Sbjct: 466 ISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEK 525

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA     +M+ +G   ++ TY  LI      +    A+AL   +     + ++ ++++
Sbjct: 526 YLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNI 585

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +I GLC  G+ +EA + L ++ EK    P VVTYN L++G  + G   +A  L + + E 
Sbjct: 586 LIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILEN 645

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  S+NT I+G    N T      L +
Sbjct: 646 GLVPDIISYNTRIKGLCSCNRTPEGVQLLNE 676



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 8/186 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK  +   A       ++KG  LDV  Y SLI GLC   ++  A+ L++++
Sbjct: 512 TYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQI 571

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLVIDGLCRVGR 125
           + +G+  ++V +N LIH          A  LL  + E++    N+  Y+ ++DG    G 
Sbjct: 572 LDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGC 631

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +++A      + E GLVP +++YN  I GLC      E  +LL +M   G  P + ++N 
Sbjct: 632 FDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNI 691

Query: 186 VIQGFL 191
           +++  +
Sbjct: 692 LVRAVI 697



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   I+G+C+       ++ ++ A   G  LD F YSS+I+GLC   RL +AV+L++K+
Sbjct: 407 TFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKI 466

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                      YN LI+   +      A+ +   +  +        Y+ +I GLC+  ++
Sbjct: 467 SMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKY 526

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA +   ++ EKG +  V TY  LI GLC+   I  A  L  Q+ +KG   D    N +
Sbjct: 527 LEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNIL 586

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G     + D AS  L +
Sbjct: 587 IHGLCSAGKVDEASQLLSE 605



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  + I  ++  Y+ ++  LC    L  AV LFD +  +G+  + +TY+ L+   + K  
Sbjct: 150 AFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLM-SGFVKNN 208

Query: 91  RF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTY 148
           R  +A+ LL  +   + + +   Y+ ++ G  R G +E+A +  +QL  + G  P + TY
Sbjct: 209 RLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATY 268

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           N++++GLCK GM  EA  +  +M      PD  ++ T+I G     + D A+
Sbjct: 269 NVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAA 320



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 10/160 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + YG  I G+C+ ++ID A+        KG+  DV +++ LI+GLC+  ++ EA +L 
Sbjct: 544 DVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLL 603

Query: 64  DKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
            +M  +      +VTYN L+ D + + G F  A +L   +  +    +I  Y+  I GLC
Sbjct: 604 SEMKEKNNCCPNVVTYNTLM-DGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLC 662

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
              R  E  + L+++   G++P  +T+NIL+  + K G I
Sbjct: 663 SCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPI 702


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK   +  A+       ++G+   V  Y++LI  L    +++E  +LFD+ 
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  +LV YN LI+ +        A  ++  +E+ +   +   Y+ ++ GLC +GR 
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK +D+++E+G+ P +VTYN LI+G   KG + +A ++  +M  KG  P   ++N +
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 837

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A + +K+
Sbjct: 838 IQGLCKNGQGDDAENMVKE 856



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 16/212 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCT 52
            +L  Q  + N   Y   I G C    + +A+        + GI  + + Y ++I+G C 
Sbjct: 503 LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 562

Query: 53  FNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELN 109
             R+ EAV++FD+M+ +G +  E V YN LI   +  QG+     L   + +ER    + 
Sbjct: 563 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALI-GGYCDQGKLDTALLYRDRMVER-GVAMT 620

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+L++  L   GR  EA + ++++  KGL P V TYNILING CK+G + +A ++  
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 680

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVK---NETDR 198
            M  +G      ++  +I     K    ETD+
Sbjct: 681 NMSRRGVRATVVTYTALIYALSKKGQVQETDK 712



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           LT+   K    +Y   I G C   ++D+A       +++G+ + V  Y+ L++ L    R
Sbjct: 577 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 636

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA EL ++M  +G+  ++ TYN LI+ + ++     A+ + + + R      +  Y+ 
Sbjct: 637 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTA 696

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  L + G+ +E  K  D+   +G+ P +V YN LIN     G I  A +++ +M++K 
Sbjct: 697 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 756

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++NT+++G  +    D A   + +
Sbjct: 757 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE 786



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD   +R  + +  +Y   IN       ID A        KK I  D   Y++L+ GLC 
Sbjct: 714 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 773

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA +L D+M  +GI  +LVTYN LI     K     A+ +   +    +   +  
Sbjct: 774 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 833

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           Y+ +I GLC+ G+ ++A   + ++ E G+ P   TY  LI GL
Sbjct: 834 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            ++ ++  LC+  +   A+EL  +M         VTYN +I   +  +GR  +A+ +++ 
Sbjct: 485 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA-GFCSRGRVQAALDIMRE 539

Query: 101 L-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158
           + ER     N   Y  VI G C+VGR +EA K  D++  KG V P  V YN LI G C +
Sbjct: 540 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 599

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G +  A     +M E+G      ++N ++    +
Sbjct: 600 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 633


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++ +  + N   Y + ING+C+   +  A +       KG   D   Y++L+NG C    
Sbjct: 71  MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+ +  +MV  G++  +VTY  LI+   + +    AM     +       N   Y+ 
Sbjct: 131 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  R G   EA + L++++E G  P VVTYN  I+G C    + EA  ++ +M EKG
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  S++T+I GF  K E DRA
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRA 274



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I+  +  +V+ Y+ LI G C+   L++ +  F +M   G    +VTYN LI D + K GR
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI-DAYCKMGR 60

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  LL+++     + N+  Y+++I+GLCR G  +EA + L+++  KG  P  VTYN 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+NG CK+G   +A  +  +M   G  P   ++  +I         +RA  F  +
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 175



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN MCK R ++ A++       +G+  +   Y++LI+G      L EA  + ++M
Sbjct: 152 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 211

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G +  +VTYN  IH +   +    A+ ++Q +       ++  YS +I G CR G  
Sbjct: 212 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGEL 271

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +   ++ EKG+ P  VTY+ LI GLC+   + EA  L  +M + G  PD  ++ T+
Sbjct: 272 DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTL 331

Query: 187 IQGFLVKNETDRA 199
           I  + V+ + ++A
Sbjct: 332 INAYCVEGDLNKA 344



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +   R   N + Y I I G C + E+   +       + G   +V  Y++LI+  C   R
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  L   M ++G+   L++YN +I+    +     A  +L+ +    +  +   Y+ 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++G C+ G + +A     ++   G+ P VVTY  LIN +CK   +  A +   QM+ +G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 176 CFPDSTSFNTVIQGF 190
             P+  ++ T+I GF
Sbjct: 181 LRPNERTYTTLIDGF 195



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE  F  +   Y   I+G C +  ++ A       ++KG+  DV  YS++I+G C   
Sbjct: 210 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKG 269

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ++  +MV +G++ + VTY+ LI    E +    A  L Q +       +   Y+
Sbjct: 270 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 329

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G   +A    D++  KG +P  VTY++LINGL K+    EA +LL ++  +
Sbjct: 330 TLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYE 389

Query: 175 GCFPDSTSFNTVIQ 188
              P   +++T+I+
Sbjct: 390 ESVPSDVTYDTLIE 403



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I+G C+  E+D A       ++KG+  D   YSSLI GLC   
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 304

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA +L  +M+  G+  +  TY  LI+    +     A+ L   +    +  +   YS
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 364

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+GL +  R  EA++ L +L  +  VP  VTY+ LI                G C KG
Sbjct: 365 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 424

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EAD++   M E+   P    +N +I G        +A +  K+
Sbjct: 425 LMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKE 470



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 87/180 (48%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++   + G    V  Y++ I+G C   R++EA+ +  +MV +G+  ++V+Y+ +I   
Sbjct: 206 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 265

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             K     A  + Q +       +   YS +I GLC + R  EA     ++ + GL P  
Sbjct: 266 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 325

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            TY  LIN  C +G + +A  L  +M  KG  PD+ +++ +I G   +  T  A   L K
Sbjct: 326 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 385



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 24/213 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I G+C++R +  A       +  G+  D F Y++LIN  C   
Sbjct: 280 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 339

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-------QTLERD-KY 106
            L +A+ L D+M+ +G   + VTY+ LI +   KQ R      L       +++  D  Y
Sbjct: 340 DLNKALHLHDEMIHKGFLPDAVTYSVLI-NGLNKQARTREAKRLLFKLIYEESVPSDVTY 398

Query: 107 EL------NIEVYSLV--IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +       NIE  S+V  I G C  G   EA +  + + E+   PG   YN++I+G C+ 
Sbjct: 399 DTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRG 458

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           G + +A  L  +M   G  P + +  T+I+   
Sbjct: 459 GNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 491


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK   +  A+       ++G+   V  Y++LI  L    +++E  +LFD+ 
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  +LV YN LI+ +        A  ++  +E+ +   +   Y+ ++ GLC +GR 
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK +D+++E+G+ P +VTYN LI+G   KG + +A ++  +M  KG  P   ++N +
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 842

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A + +K+
Sbjct: 843 IQGLCKNGQGDDAENMVKE 861



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 16/212 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCT 52
            +L  Q  + N   Y   I G C    + +A+        + GI  + + Y ++I+G C 
Sbjct: 508 LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 567

Query: 53  FNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELN 109
             R+ EAV++FD+M+ +G +  E V YN LI   +  QG+     L   + +ER    + 
Sbjct: 568 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALI-GGYCDQGKLDTALLYRDRMVER-GVAMT 625

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+L++  L   GR  EA + ++++  KGL P V TYNILING CK+G + +A ++  
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 685

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVK---NETDR 198
            M  +G      ++  +I     K    ETD+
Sbjct: 686 NMSRRGVRATVVTYTALIYALSKKGQVQETDK 717



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           LT+   K    +Y   I G C   ++D+A       +++G+ + V  Y+ L++ L    R
Sbjct: 582 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 641

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA EL ++M  +G+  ++ TYN LI+ + ++     A+ + + + R      +  Y+ 
Sbjct: 642 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTA 701

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  L + G+ +E  K  D+   +G+ P +V YN LIN     G I  A +++ +M++K 
Sbjct: 702 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 761

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++NT+++G  +    D A   + +
Sbjct: 762 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE 791



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD   +R  + +  +Y   IN       ID A        KK I  D   Y++L+ GLC 
Sbjct: 719 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 778

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA +L D+M  +GI  +LVTYN LI     K     A+ +   +    +   +  
Sbjct: 779 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 838

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           Y+ +I GLC+ G+ ++A   + ++ E G+ P   TY  LI GL
Sbjct: 839 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            ++ ++  LC+  +   A+EL  +M         VTYN +I   +  +GR  +A+ +++ 
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA-GFCSRGRVQAALDIMRE 544

Query: 101 L-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158
           + ER     N   Y  VI G C+VGR +EA K  D++  KG V P  V YN LI G C +
Sbjct: 545 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 604

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G +  A     +M E+G      ++N ++    +
Sbjct: 605 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 638


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 113/202 (55%), Gaps = 14/202 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L  Q F+ N   YG  ING+CKI +  +AIK       +    DV +YS++I+ LC +  
Sbjct: 154 LLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQL 213

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +M  +GI+A++VTYN LI+          A+ LL  +       ++  Y++
Sbjct: 214 VSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTI 273

Query: 116 VIDGLCRVGRWEEARKK-------LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++D LC+ G+ +EA+++       +D++ ++G    V+TY+ LI+GLCK G +  A  L 
Sbjct: 274 LVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALF 333

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +MK++G  P+  +F  ++ G 
Sbjct: 334 NKMKDQGIRPNMFTFTILLDGL 355



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 16/219 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T +    +   Y   I G C + ++  AI        K I  DV+ Y+ L++ LC   
Sbjct: 223 EMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEG 282

Query: 55  RLKEAV-------ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKY 106
           ++KEA        +L D+M  +G  A+++TY+ LI D   K G    A+AL   ++    
Sbjct: 283 KVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLI-DGLCKNGHLDRAIALFNKMKDQGI 341

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  +++++DGL + GR ++A++    L  KG    V TYN++ING CK+G++ EA  
Sbjct: 342 RPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 401

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +L +M++ GC P++ +F T+I     K+E D+A   L++
Sbjct: 402 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQ 440



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 16/180 (8%)

Query: 11  NFHVYGIRINGMCK---IRE-----------IDSAIKKGICLDVFVYSSLINGLCTFNRL 56
           + + Y I ++ +CK   ++E           ID    +G   DV  YSSLI+GLC    L
Sbjct: 267 DVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHL 326

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSL 115
             A+ LF+KM  QGI   + T+  L+   W K GR   A  + Q L    Y LN+  Y++
Sbjct: 327 DRAIALFNKMKDQGIRPNMFTFTILLDGLW-KGGRLKDAQEVFQDLLTKGYHLNVYTYNV 385

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G C+ G  EEA   L ++ + G +P   T+  +I  L KK    +A+KLL QM  +G
Sbjct: 386 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 445



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 17  IRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I IN  C + +I          +K+G        ++LI GLC   ++K+A+   DK++AQ
Sbjct: 98  ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 157

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G     V Y  LI+   +     +A+ LL+ ++    + ++ +YS +ID LC+     EA
Sbjct: 158 GFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEA 217

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                +++ KG+   VVTYN LI G C  G + EA  LL  M  K   PD  ++  ++  
Sbjct: 218 YGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDA 277

Query: 190 F 190
            
Sbjct: 278 L 278



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI  D+F  + LIN  C   ++     +  K++ +G     VT N LI     K     
Sbjct: 87  KGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKK 146

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     L    ++LN   Y  +I+G+C++G    A K L ++  +   P VV Y+ +I+
Sbjct: 147 ALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIID 206

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            LCK  ++ EA  L  +M  KG   D  ++NT+I GF +  +   A   L
Sbjct: 207 ALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 256



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           +   + +AV  F++M+    T  ++ +N ++ D++ K   +S ++L   LE    + ++ 
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKIL-DSFAKMKHYSTVSLSHRLELKGIQPDLF 94

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA----DKL 167
             +++I+  C +G+       L ++ ++G  P  VT N LI GLC KG + +A    DKL
Sbjct: 95  TLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKL 154

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L Q    G   +   + T+I G     +T  A   LKK
Sbjct: 155 LAQ----GFQLNQVGYGTLINGVCKIGDTRAAIKLLKK 188


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 10  GNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N  +Y I +  +CK       +  + S        D++ Y+ LIN LC   RL++A  L
Sbjct: 37  ANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGL 96

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEK-QGRFSAMALLQTLER--DKYELNIEV-YSLVID 118
            + M A+    ++VTYN LIH    K  GRF      +  E   DK      V Y++VID
Sbjct: 97  VEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVID 156

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L RV   E+A+K LD + E G    +VTYN+LIN   K GM+ +A  L V+M  +GC P
Sbjct: 157 ALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIP 216

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++N+V+ GF    + + A+    +
Sbjct: 217 DVVTYNSVVDGFCKAGKVEEANKLFAE 243



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 11/204 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN----RLKEA 59
           + + Y I IN +CK+  ++ A      ++   C  D+  Y++LI+GLC       R++ A
Sbjct: 73  DIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERA 132

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF++MV +G T   VTY  +I      +    A  +L  +  +    ++  Y+++I+ 
Sbjct: 133 FRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINR 192

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             + G  ++A     ++  +G +P VVTYN +++G CK G + EA+KL  +MK +G FP+
Sbjct: 193 FAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPN 252

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             ++ ++    L       A ++L
Sbjct: 253 GRTYTSITDACLKAGRMQDAHAYL 276



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           + F YS+++ G C     ++A+ L + M    + A    YN ++    +      A+ LL
Sbjct: 3   NAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLL 62

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            ++       +I  Y+++I+ LC+VGR E+A+  ++ +  +     +VTYN LI+GLC+K
Sbjct: 63  HSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRK 122

Query: 159 G----MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           G     +  A +L  +M +KG  P S ++  VI   L
Sbjct: 123 GNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALL 159



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%)

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
           A   TY+ ++    E      A+ALL+ ++  +   N ++Y++++  LC+ G+ +EA   
Sbjct: 2   ANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDL 61

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           L  ++     P + TYNILIN LCK G + +A  L+  M+ + C  D  ++NT+I G   
Sbjct: 62  LHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCR 121

Query: 193 K 193
           K
Sbjct: 122 K 122



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ + +++  + A K        G   D+  Y+ LIN       + +A++LF +M
Sbjct: 150 TYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEM 209

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G   ++VTYN ++ D + K G+   A  L   ++      N   Y+ + D   + GR
Sbjct: 210 PTRGCIPDVVTYNSVV-DGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGR 268

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A   L ++ ++GLV  + +Y  LI+ +CK G      +LL +M EKG  P+  +FN 
Sbjct: 269 MQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNV 327

Query: 186 VIQGFLVKNETDRA 199
           V +    ++ TD A
Sbjct: 328 VFEALSKESNTDDA 341



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + N   YS ++ G C  G   +A   L+ +    +      YNI++  LCK G   EA  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGF 190
           LL  M    C PD  ++N +I   
Sbjct: 61  LLHSMATTSCAPDIYTYNILINAL 84


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  +NG CKI  ID  +       ++GI     +YS +I+GL    R   A   F +M 
Sbjct: 575 YGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMT 634

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  ++ TYN ++   ++ +    A+ L + L     ++NI   + +IDG+ +  R E
Sbjct: 635 ESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE 694

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+     +S   LVP VVTY+I+I  L K+G++ EA+ +   M+  GC P+S   N V+
Sbjct: 695 EAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVV 754

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L KNE  RA ++L K
Sbjct: 755 RELLKKNEIVRAGAYLSK 772



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E+ S I   G+ LD+  +SS+IN LC   R
Sbjct: 458 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G+  + V YN L+ D +   G+   A+ +   +     E N+  Y 
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYG 576

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ ++G+ P  + Y+I+I+GL + G  + A     +M E 
Sbjct: 577 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTES 636

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   D  ++N V++G L KN     + FL K +
Sbjct: 637 GIAMDICTYNIVLRG-LFKNRCFDEAIFLFKEL 668



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 84/155 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+++I+G      + +A +LF +MV +GI  +LVTYN ++H   + +    A A L
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +   +   N   Y+ +I G    G+W+EA +   ++    ++P VVT ++L+  LCK 
Sbjct: 281 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 340

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+N ++ G+  K
Sbjct: 341 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F+ + + I        +D A+         G+  DV  Y ++I  LC   ++ +A+E F
Sbjct: 396 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+ QG+  +   YN LI           A  L+  +  +   L+I  +S +I+ LC++
Sbjct: 456 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 515

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A+   D     GL P  V YN+L++G C  G + +A ++   M   G  P+   +
Sbjct: 516 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 575

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T++ G+      D   S  ++
Sbjct: 576 GTLVNGYCKIGRIDEGLSLFRE 597



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K  +++ A       +++GI  D+  Y+S+++ LC    + +A    
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV + +     TYN LI+  +   G++  A+ + + + R     ++   S+++  LC+
Sbjct: 281 RQMVNKRVLPNNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ +EAR   D ++ KG  P V +YNI++NG   KG +++   L   M   G  PD  +
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 183 FNTVIQGFLVKNETDRA 199
           FN +I+ +      D+A
Sbjct: 400 FNVLIKAYANCGMLDKA 416



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      +  I  DV   S L+  LC + ++KEA ++FD M  +G 
Sbjct: 299 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 358

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +YN +++    K        L   +  D    +   ++++I      G  ++A  
Sbjct: 359 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 418

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  ++N +IQGF 
Sbjct: 419 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 478

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 479 THGSLLKAKELISEIM 494



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+   ++  N L+    E +    A+ +L  L 
Sbjct: 117 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDIL--LH 174

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV YN +I+G  
Sbjct: 175 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFF 233

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++N+V+         D+A +FL++
Sbjct: 234 KEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 282


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+  ++D+A +      +  D + Y+ +I GLC   R+ EA+ L D M+ +
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 234

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L++LS  G  P  V+Y  ++ GLC      + ++L  +M EK C P+  +F+ +++ 
Sbjct: 235 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 294

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 295 FCRGGMVERAIQVLEQ 310



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D   Y++++ GLC 
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R ++  ELF +M+ +      VT++ L+                              
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 84  -----DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                +   KQGR   A   L  +       +   Y+ V+ GLCR  RWE+A++ L ++ 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K   P  VT+N  I  LC+KG+I +A  L+ QM E GC  +  ++N ++ GF V+   D
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 198 RA 199
            A
Sbjct: 443 SA 444



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 9/199 (4%)

Query: 13  HVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G+C        +  +D  + +G    V  Y+ L+  +C      +A+E+ D+
Sbjct: 146 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 205

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G T  +VTYN +I +   ++GR   A   L  L    ++ +   Y+ V+ GLC   
Sbjct: 206 MRAKGCTPNIVTYNVII-NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 264

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RWE+  +   ++ EK  +P  VT+++L+   C+ GM+  A ++L QM   GC  ++T  N
Sbjct: 265 RWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 324

Query: 185 TVIQGFLVKNETDRASSFL 203
            VI     +   D A  FL
Sbjct: 325 IVINTICKQGRVDDAFQFL 343



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D A  +G   DV++ + LI  LC   R  +A  +       G   ++  YN L+   
Sbjct: 64  RLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA-G 122

Query: 86  WEKQGRFSAMALL---QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + + G+  A   L     +  D Y      Y+ +I GLC  GR  EA   LD +  +G  
Sbjct: 123 YCRYGQLDAARRLIASMPVAPDAY-----TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY +L+  +CK     +A ++L +M+ KGC P+  ++N +I G   +   D A  F
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 203 LKK 205
           L +
Sbjct: 238 LNR 240



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 39/233 (16%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N  +  I IN +CK   +D A +        G   D   Y++++ GLC   R ++A EL
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 377

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +MV +      VT+N  I    +K     A  L++ +     E+NI  Y+ +++G C 
Sbjct: 378 LKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCV 437

Query: 123 VGRWEEA-------------------------RKKLDQLSE-------KGLVPGVVTYNI 150
            GR + A                          ++LD  +E       K   P VVT+N+
Sbjct: 438 QGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L++  C+KG++ EA +L+ QM E GC P+  ++NT++ G      ++ A   L
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELL 550



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C    +D+A       ++K    +V  ++ L++  C    + EA+E
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+TYN L+           A+ LL  L  +    +I  YS +I  L 
Sbjct: 514 LVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLS 573

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R  R EEA K    + + G+ P  V YN ++  LCK+     A      M   GC P+  
Sbjct: 574 REDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 633

Query: 182 SFNTVIQGF 190
           ++ T+I+G 
Sbjct: 634 TYITLIEGL 642



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL----DVFVYSSLINGLCTFNRLKE 58
           ++E   + N   Y   +NG C    +DSA++    +    +   Y++L+ GLC   RL  
Sbjct: 416 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDA 475

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A EL  +M+ +     +VT+N L+    +K     A+ L++ +       N+  Y+ ++D
Sbjct: 476 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G+      EEA + L  L   G+ P +VTY+ +I  L ++  + EA K+   +++ G  P
Sbjct: 536 GITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRP 595

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
            +  +N ++     +  TD A  F 
Sbjct: 596 KAVIYNKILLALCKRCNTDGAIDFF 620



 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +D+ + +G  P V     LI  LC++G   +A ++L   +  G   D  ++NT++
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 188 QGFLVKNETDRASSFL 203
            G+    + D A   +
Sbjct: 121 AGYCRYGQLDAARRLI 136


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+  ++D+A +      +  D + Y+ +I GLC   R+ EA+ L D M+ +
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 234

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L++LS  G  P  V+Y  ++ GLC      + ++L  +M EK C P+  +F+ +++ 
Sbjct: 235 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 294

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 295 FCRGGMVERAIQVLEQ 310



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D   Y++++ GLC 
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R ++  ELF +M+ +      VT++ L+                              
Sbjct: 263 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 84  -----DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                +   KQGR   A   L  +       +   Y+ V+ GLCR  RWE+A++ L ++ 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K   P  VT+N  I  LC+KG+I +A  L+ QM E GC  +  ++N ++ GF V+   D
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 198 RA 199
            A
Sbjct: 443 SA 444



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 9/199 (4%)

Query: 13  HVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G+C        +  +D  + +G    V  Y+ L+  +C      +A+E+ D+
Sbjct: 146 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 205

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G T  +VTYN +I +   ++GR   A   L  L    ++ +   Y+ V+ GLC   
Sbjct: 206 MRAKGCTPNIVTYNVII-NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 264

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RWE+  +   ++ EK  +P  VT+++L+   C+ GM+  A ++L QM   GC  ++T  N
Sbjct: 265 RWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 324

Query: 185 TVIQGFLVKNETDRASSFL 203
            VI     +   D A  FL
Sbjct: 325 IVINTICKQGRVDDAFQFL 343



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D A  +G   DV++ + LI  LC   R  +A  +       G   ++  YN L+   
Sbjct: 64  RLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA-G 122

Query: 86  WEKQGRFSAMALL---QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + + G+  A   L     +  D Y      Y+ +I GLC  GR  EA   LD +  +G  
Sbjct: 123 YCRYGQLDAARRLIASMPVAPDAY-----TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY +L+  +CK     +A ++L +M+ KGC P+  ++N +I G   +   D A  F
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 203 LKK 205
           L +
Sbjct: 238 LNR 240



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 39/233 (16%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N  +  I IN +CK   +D A +        G   D   Y++++ GLC   R ++A EL
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 377

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +MV +      VT+N  I    +K     A  L++ +     E+NI  Y+ +++G C 
Sbjct: 378 LKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCV 437

Query: 123 VGRWEEA-------------------------RKKLDQLSE-------KGLVPGVVTYNI 150
            GR + A                          ++LD  +E       K   P VVT+N+
Sbjct: 438 QGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L++  C+KG++ EA +L+ QM E GC P+  ++NT++ G      ++ A   L
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 550



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C    +D+A       ++K    +V  ++ L++  C    + EA+E
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+TYN L+    +      A+ LL  L  +    +I  YS +I  L 
Sbjct: 514 LVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLS 573

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R  R EEA K    + + G+ P  V YN ++  LCK+     A      M   GC P+  
Sbjct: 574 REDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 633

Query: 182 SFNTVIQGF 190
           ++ T+I+G 
Sbjct: 634 TYITLIEGL 642



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL----DVFVYSSLINGLCTFNRLKE 58
           ++E   + N   Y   +NG C    +DSA++    +    +   Y++L+ GLC   RL  
Sbjct: 416 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDA 475

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A EL  +M+ +     +VT+N L+    +K     A+ L++ +       N+  Y+ ++D
Sbjct: 476 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G+ +    EEA + L  L   G+ P +VTY+ +I  L ++  + EA K+   +++ G  P
Sbjct: 536 GITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRP 595

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
            +  +N ++     +  TD A  F 
Sbjct: 596 KAVIYNKILLALCKRCNTDGAIDFF 620



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +D+ + +G  P V     LI  LC++G   +A ++L   +  G   D  ++NT++
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 188 QGFLVKNETDRASSFL 203
            G+    + D A   +
Sbjct: 121 AGYCRYGQLDAARRLI 136


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+  ++D+A +      +  D + Y+ +I GLC   R+ EA+ L D M+ +
Sbjct: 146 AYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 205

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 206 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 265

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L++LS  G  P  V+Y  ++ GLC      + ++L  +M EK C P+  +F+ +++ 
Sbjct: 266 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 325

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 326 FCRGGMVERAIQVLEQ 341



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D   Y++++ GLC 
Sbjct: 234 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 293

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R ++  ELF +M+ +      VT++ L+                              
Sbjct: 294 AKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 84  -----DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                +   KQGR   A   L  +       +   Y+ V+ GLCR  RWE+A++ L ++ 
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K   P  VT+N  I  LC+KG+I +A  L+ QM E GC  +  ++N ++ GF V+   D
Sbjct: 414 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 473

Query: 198 RA 199
            A
Sbjct: 474 SA 475



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 9/199 (4%)

Query: 13  HVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G+C        +  +D  + +G    V  Y+ L+  +C      +A+E+ D+
Sbjct: 177 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 236

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G T  +VTYN +I +   ++GR   A   L  L    ++ +   Y+ V+ GLC   
Sbjct: 237 MRAKGCTPNIVTYNVII-NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAK 295

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RWE+  +   ++ EK  +P  VT+++L+   C+ GM+  A ++L QM   GC  ++T  N
Sbjct: 296 RWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 355

Query: 185 TVIQGFLVKNETDRASSFL 203
            VI     +   D A  FL
Sbjct: 356 IVINTICKQGRVDDAFQFL 374



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D A  +G   DV++ + LI  LC   R  +A  +       G   ++  YN L+   
Sbjct: 95  RLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA-G 153

Query: 86  WEKQGRFSAMALL---QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + + G+  A   L     +  D Y      Y+ +I GLC  GR  EA   LD +  +G  
Sbjct: 154 YCRYGQLDAARRLIASMPVAPDAY-----TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY +L+  +CK     +A ++L +M+ KGC P+  ++N +I G   +   D A  F
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 203 LKK 205
           L +
Sbjct: 269 LNR 271



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 39/233 (16%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N  +  I IN +CK   +D A +        G   D   Y++++ GLC   R ++A EL
Sbjct: 349 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 408

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +MV +      VT+N  I    +K     A  L++ +     E+NI  Y+ +++G C 
Sbjct: 409 LKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCV 468

Query: 123 VGRWEEA-------------------------RKKLDQLSE-------KGLVPGVVTYNI 150
            GR + A                          ++LD  +E       K   P VVT+N+
Sbjct: 469 QGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L++  C+KG++ EA +L+ QM E GC P+  ++NT++ G      ++ A   L
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 581



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C    +D+A       ++K    +V  ++ L++  C    + EA+E
Sbjct: 485 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 544

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+TYN L+    +      A+ LL  L  +    +I  YS +I  L 
Sbjct: 545 LVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLS 604

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R  R EEA K    + + G+ P  V YN ++  LCK+     A      M   GC P+  
Sbjct: 605 REDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 664

Query: 182 SFNTVIQGF 190
           ++ T+I+G 
Sbjct: 665 TYITLIEGL 673



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL----DVFVYSSLINGLCTFNRLKE 58
           ++E   + N   Y   +NG C    +DSA++    +    +   Y++L+ GLC   RL  
Sbjct: 447 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDA 506

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A EL  +M+ +     +VT+N L+    +K     A+ L++ +       N+  Y+ ++D
Sbjct: 507 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 566

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G+ +    EEA + L  L   G+ P +VTY+ +I  L ++  + EA K+   +++ G  P
Sbjct: 567 GITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRP 626

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
            +  +N ++     +  TD A  F 
Sbjct: 627 KAVIYNKILLALCKRCNTDGAIDFF 651



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + +D+ + +G  P V     LI  LC++G   +A ++L   +  G   D  ++NT++ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 189 GFLVKNETDRASSFL 203
           G+    + D A   +
Sbjct: 153 GYCRYGQLDAARRLI 167


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ++G CKI  +  A++        G+  +V  +  LI+GLC  + +  A +  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFL 321

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M + G+   +  YN LI D + K G  S A++L   +E+ +   ++  YS++I GLC 
Sbjct: 322 IDMASFGVVPNIFVYNCLI-DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V R EEA   L ++ +KG +P  VTYN LI+G CK+G + +A ++  QM EKG  P+  +
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 183 FNTVIQGFLVKNETDRA 199
           F+T+I G+    + + A
Sbjct: 441 FSTLIDGYCKAGKMEAA 457



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 102/212 (48%), Gaps = 22/212 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK   +  A+       K  I  DVF YS LI GLC  +R++EA  L 
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  +G     VTYN LI D + K+G    A+ +   +     E NI  +S +IDG C+
Sbjct: 392 QEMKKKGFLPNAVTYNTLI-DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E A     ++  KGL+P VV Y  LI+G  K G   EA +L  +M+E G  P+  +
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 183 FNTVIQG-------------FLVKNETDRASS 201
            + +I G             FL K  TD   S
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   YG  I+G C+        R  D  I+K I   V +Y+ LI GLC  +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  +F  M   G+   L TYN ++    +      A+ L Q +  D    N+  + 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFG 302

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGLC+      ARK L  ++  G+VP +  YN LI+G CK G + EA  L  ++++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  +++ +I+G    +  + A   L++
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQE 393



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 20/208 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y   I+G CK   ++ AI       +KGI  ++  +S+LI+G C   
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+ L+ +MV +G+  ++V Y  LI  +++      A  L + ++      N+   S
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 115 LVIDGLCRVGRWEEARK-------------KLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +IDGLC+ GR  +A K             K ++L      P  V Y  LI GLC  G I
Sbjct: 513 CLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRI 572

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +A K    M+  G  PD  +   +IQG
Sbjct: 573 FKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVF----VYSSLINGLCTFNRLKE 58
           L   +F  N  V+G+ I    ++  ++ A+     +DV       + +++GL    R   
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDT 176

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVI 117
             +++  MVA+G +  +VTY  LI D   +QG F  A  L   +   K    + +Y+++I
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLI-DGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC   R  EA      +   G++P + TYN +++G CK   + +A +L  +M   G  
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
           P+  +F  +I G    +E   A  FL
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFL 321



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 22/209 (10%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + N   +   I+G CK  ++++A       + KG+  DV  Y++LI+G      
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL-------------QTL 101
            KEA  L  +M   G+   + T + LI D   K GR S A+ L                L
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLI-DGLCKDGRISDAIKLFLAKTGTDTTGSKTNEL 547

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +R     N  +Y+ +I GLC  GR  +A K    +   GL P V T  ++I G  +   +
Sbjct: 548 DRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHL 607

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +   L   + + G  P+S+ +  + +G+
Sbjct: 608 RDVMMLQADILKMGIIPNSSVYRVLAKGY 636



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 92  FSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           FS M L++      Y++++    +  ++V+DGL + GR++   K    +  +G  P VVT
Sbjct: 136 FSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y  LI+G C++G  ++A +L  +M EK  FP    +  +I+G   ++    A S  +
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFR 252


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ++G CKI  +  A++        G+  +V  +  LI+GLC  + +  A +  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFL 321

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M + G+   +  YN LI D + K G  S A++L   +E+ +   ++  YS++I GLC 
Sbjct: 322 IDMASFGVVPNIFVYNCLI-DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V R EEA   L ++ +KG +P  VTYN LI+G CK+G + +A ++  QM EKG  P+  +
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 183 FNTVIQGF 190
           F+T+I G+
Sbjct: 441 FSTLIDGY 448



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 102/212 (48%), Gaps = 22/212 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK   +  A+       K  I  DVF YS LI GLC  +R++EA  L 
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  +G     VTYN LI D + K+G    A+ +   +     E NI  +S +IDG C+
Sbjct: 392 QEMKKKGFLPNAVTYNTLI-DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E A     ++  KGL+P VV Y  LI+G  K G   EA +L  +M+E G  P+  +
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 183 FNTVIQG-------------FLVKNETDRASS 201
            + +I G             FL K  TD   S
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   YG  I+G C+        R  D  I+K I   V +Y+ LI GLC  +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  +F  M   G+   L TYN ++    +      A+ L Q +  D    N+  + 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFG 302

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGLC+      ARK L  ++  G+VP +  YN LI+G CK G + EA  L  ++++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  +++ +I+G    +  + A   L++
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQE 393



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVF----VYSSLINGLCTFNRLKE 58
           L   +F  N  V+G+ I    ++  ++ A+     +DV       + +++GL    R   
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDT 176

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVI 117
             +++  MVA+G +  +VTY  LI D   +QG F  A  L   +   K    + +Y+++I
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLI-DGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC   R  EA      +   G++P + TYN +++G CK   + +A +L  +M   G  
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
           P+  +F  +I G    +E   A  FL
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFL 321



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 7/137 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y   I+G CK   ++ AI       +KGI  ++  +S+LI+G C   
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+ L+ +MV +G+  ++V Y  LI  +++      A  L + ++      N+   S
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 115 LVIDGLCRVGRWEEARK 131
            +IDGLC+ GR  +A K
Sbjct: 513 CLIDGLCKDGRISDAIK 529



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 92  FSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           FS M L++      Y++++    +  ++V+DGL + GR++   K    +  +G  P VVT
Sbjct: 136 FSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y  LI+G C++G  ++A +L  +M EK  FP    +  +I+G   ++    A S  +
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFR 252


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK   +  A+       ++G+   V  Y+SLI  L    +++E  +LFD+ 
Sbjct: 329 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  +LV YN LI+ +        A  ++  +E+ +   +   Y+ ++ GLC +GR 
Sbjct: 389 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 448

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK +D+++++G+ P +VTYN LI+G   KG + +A ++  +M  KG  P   ++N +
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 508

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A + +K+
Sbjct: 509 IQGLCKNGQGDDAENMVKE 527



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKG----NFHVYGIRINGMCKIREIDSAIK-------KG-ICLDVFVYSSLINGL 50
           + E R +G    N + YG  I+G CK+  +D A+K       KG +  +  +Y++LI G 
Sbjct: 208 MREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 267

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   +L  A+   D+MV +G+   + TYN L+H  +       A  L++ +      L++
Sbjct: 268 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDV 327

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++I+G C+ G  ++A +  + +S +G+   VVTY  LI  L KKG + E DKL  +
Sbjct: 328 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDE 387

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +G  PD   +N +I         DRA
Sbjct: 388 AVRRGIRPDLVLYNALINSHSTSGNIDRA 416



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 1   FD--LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC 51
           FD  LT+   K    +Y   I G C   ++D+A       +++G+ + V  Y+ L++ L 
Sbjct: 244 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 303

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R  EA EL ++M  +G+  ++ TYN LI+ + ++     A+ + + + R      + 
Sbjct: 304 MDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVV 363

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  L + G+ +E  K  D+   +G+ P +V YN LIN     G I  A +++ +M
Sbjct: 364 TYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 423

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++K   PD  ++NT+++G  +    D A   +
Sbjct: 424 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 455



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD   +R  + +  +Y   IN       ID A        KK I  D   Y++L+ GLC 
Sbjct: 385 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 444

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA +L D+M  +GI  +LVTYN LI     K     A+ +   +    +   +  
Sbjct: 445 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 504

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Y+ +I GLC+ G+ ++A   + ++ E G+ P   TY  LI GL  +
Sbjct: 505 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            ++ ++  LC+  +   A+EL  +M         VTYN +I   +  +GR  +A+ +++ 
Sbjct: 156 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA-GFCSRGRVQAALDIMRE 210

Query: 101 L-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158
           + ER     N   Y  VI G C+VGR +EA K  D++  KG V P  V YN LI G C +
Sbjct: 211 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 270

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G +  A     +M E+G      ++N ++    +
Sbjct: 271 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFM 304



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 44  SSLINGLCTFNRL----KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           SSL N L T +        ++ L+ +M +  +     + +PL+           A AL  
Sbjct: 88  SSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLL----SALPSAPAFALFA 143

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + R +  L    +++++  LC  G+   A + L Q+      P  VTYN +I G C +G
Sbjct: 144 DMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRG 199

Query: 160 MIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRA 199
            +  A  ++ +M+E+G   P+  ++ TVI G+      D A
Sbjct: 200 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 240


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + +  ++   I+ +CK R +D A+        KGI  +V  YSSLI+ LC++ R  +A
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
            +L   M+ + I   LVT+N LI D + K+G+F  A  L   + +   + +I  Y+ +++
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALI-DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R ++A++  + +  K   P VVTYN LI G CK   + +  +L  +M  +G   
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ ++ T+IQG     + D A    K+
Sbjct: 434 DTVTYTTLIQGLFHDGDCDNAQKVFKQ 460



 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 44/242 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    +   Y   +NG C    +D A       + K    DV  Y++LI G C   
Sbjct: 355 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWEK------------------ 88
           R+++  ELF +M  +G+  + VTY  LI         DN +K                  
Sbjct: 415 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 474

Query: 89  --------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                    G+   A+ +   +++ + +L+I +Y+ +I+G+C+ G+ ++       LS K
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VVTYN +I+GLC K ++ EA  LL +MKE G  P+S ++NT+I+  L   + D+A
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL--RDGDKA 592

Query: 200 SS 201
           +S
Sbjct: 593 AS 594



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G
Sbjct: 163 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               LVTY  +++   ++     A+ LL  +E  K E ++ +++ +ID LC+    ++A 
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M EK   P+  +FN +I  F
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340

Query: 191 L 191
           +
Sbjct: 341 V 341



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 94/172 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G   ++  Y  ++NGLC       A+ L +KM A  I A++V +N +I    +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L + +E      N+  YS +I  LC  GRW +A + L  + EK + P +VT
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI+   K+G  +EA+KL   M ++   PD  ++N+++ GF + +  D+A
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 12  FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            + Y I IN  C+  +I  A+       K G    +   SSL+NG C   R+ +AV L D
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +MV  G   + +T+  LIH  +       A+AL+  + +   + N+  Y +V++GLC+ G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             + A   L+++    +   VV +N +I+ LCK   + +A  L  +M+ KG  P+  +++
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299

Query: 185 TVIQGFLVKNETDRASSFL 203
           ++I           AS  L
Sbjct: 300 SLISCLCSYGRWSDASQLL 318



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM K R + S ++         ++ L++ +    +    + L +KM    I   L TYN 
Sbjct: 75  GMVKSRPLPSIVE---------FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI+    +     A+ALL  + +  YE +I   S +++G C   R  +A   +DQ+ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P  +T+  LI+GL       EA  L+ +M ++GC P+  ++  V+ G   + +TD A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 201 SFLKK 205
           + L K
Sbjct: 246 NLLNK 250



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++ + K+++ D  I  G       I   ++ Y+ LIN  C  +++  A+ L  KM+  G 
Sbjct: 92  LSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY 151

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VT + L++     +    A+AL+  +    Y  +   ++ +I GL    +  EA  
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +D++ ++G  P +VTY +++NGLCK+G    A  LL +M+      D   FNT+I    
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271

Query: 192 VKNETDRASSFLKK 205
                D A +  K+
Sbjct: 272 KYRHVDDALNLFKE 285



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +   G+   Y   I G+    + D+A       +  G+  D+  YS L++GLC   
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+FD M    I  ++  Y  +I    +         L  +L     + N+  Y+
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC     +EA   L ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 604

Query: 175 GCFPDSTSFNTV 186
               D+++   V
Sbjct: 605 RFVGDASTIGLV 616


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   + G+CKI + D A       ++ G+  +   Y++L+  +C  + + EA E+FD+M
Sbjct: 329 TYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +LV+++ LI         + A+   + +ER     +  +Y+++IDG CR G  
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A K  D++  +G    VVTYN  +NGLCKK M  +AD L  +M E+G  PD  +F T+
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 187 IQGFLVKNETDRA 199
           I+G+      D+A
Sbjct: 509 IRGYCKDGNMDKA 521



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I+G C+   +  A+K       +G  +DV  Y++ +NGLC      +A  LF++M
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  +  T+  LI    +      A+ L + + R   + +   Y+ +IDG C+ G  
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEM 553

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A++  D +  K ++P  ++Y  ++NG C  G++ EA  L  QM EKG  P+  + NT+
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G+    +  +A  +L K
Sbjct: 614 IKGYCRSGDMPKAYEYLSK 632



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK +    A       +++G+  D + +++LI G C    + +A+ LF+ M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V   +  + VTYN LI D + K G    A  L   + R     +   Y  V++G C  G 
Sbjct: 529 VRTNLKPDKVTYNTLI-DGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA    DQ+ EKG+ P +VT N LI G C+ G + +A + L +M   G  PDS S+NT
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 186 VIQGFLVKNETDRA 199
           +I G+L +   ++A
Sbjct: 648 LIDGYLKEANLEKA 661



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+       D  I+K I  D   Y +++NG C+   L EA+ L D+M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI   LVT N LI           A   L  +  +    +   Y+ +IDG  +    
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A   ++++ ++GL   ++TYN+++NG C +G + EA+++L +M E G  PD  +++++
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718

Query: 187 IQGFLVKNETDRASSF 202
           I G + ++    A  F
Sbjct: 719 INGHVSQDNMKEAFRF 734



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  +NG C        +   D  ++KGI  ++   ++LI G C    + +A E   KM+
Sbjct: 575 YGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMI 634

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + GI  +  +YN LI D + K+     A  L+  +E+   + NI  Y+L+++G C  G+ 
Sbjct: 635 SNGIIPDSFSYNTLI-DGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +EA + L ++ E G+ P   TY+ LING   +  + EA +   +M ++G  PD
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 1   FDLTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGL 50
           F L++   KG F     Y   IN  C+   ++ A +       +G+   +  Y++++ GL
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   +   A ++  +M+  G+T    TYN L+ +   +     A  +   + R     ++
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDL 397

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +S +I  L R G   +A     ++   G+VP  V Y ILI+G C+ G + +A K+  +
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDE 457

Query: 171 MKEKGCFPDSTSFNTVIQGFLVK 193
           M  +GCF D  ++NT + G   K
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKK 480



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 24  KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A     +KG+ + +   + L+ GL     +  A E++ ++V  GI   + T N
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +++   + +   + M  L  +E      +I  Y+ +I+  CR G  EEA + L+  S +
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR 321

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+ PG++TYN ++ GLCK G    A  +L++M + G  P++ ++NT++
Sbjct: 322 GMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +F+ +   I G CK   +D A       ++  +  D   Y++LI+G C   
Sbjct: 492 EMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAG 551

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A EL+D M+ + I  + ++Y  +++          A+ L   +       N+   +
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G   +A + L ++   G++P   +YN LI+G  K+  + +A  L+ +M+++
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   +  ++N ++ GF  + +   A   L+K
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLRK 702



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDV--FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +R +G+ +++ ++S I           +Y  L+       +L+E  E F  +  +G++  
Sbjct: 162 VRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVS 221

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +   N L+           A  +   + R   ELN+   +++++ LC+  ++E     L 
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            +  KG+   +VTYN LIN  C++G++ EA +LL     +G  P   ++N ++ G     
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 195 ETDRASSFL 203
           + DRA   L
Sbjct: 342 KYDRAKDVL 350


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   + G+CKI + D A       ++ G+  +   Y++L+  +C  + + EA E+FD+M
Sbjct: 329 TYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +LV+++ LI         + A+   + +ER     +  +Y+++IDG CR G  
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A K  D++  +G    VVTYN  +NGLCKK M  +AD L  +M E+G  PD  +F T+
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 187 IQGFLVKNETDRA 199
           I+G+      D+A
Sbjct: 509 IRGYCKDGNMDKA 521



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I+G C+   +  A+K       +G  +DV  Y++ +NGLC      +A  LF++M
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  +  T+  LI    +      A+ L + + R   + +   Y+ +IDG C+ G  
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEM 553

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A++  D +  K ++P  ++Y  ++NG C  G++ EA  L  QM EKG  P+  + NT+
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G+    +  +A  +L K
Sbjct: 614 IKGYCRSGDMPKAYEYLSK 632



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK +    A       +++G+  D + +++LI G C    + +A+ LF+ M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V   +  + VTYN LI D + K G    A  L   + R     +   Y  V++G C  G 
Sbjct: 529 VRTNLKPDKVTYNTLI-DGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA    DQ+ EKG+ P +VT N LI G C+ G + +A + L +M   G  PDS S+NT
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 186 VIQGFLVKNETDRA 199
           +I G+L +   ++A
Sbjct: 648 LIDGYLKEANLEKA 661



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+       D  I+K I  D   Y +++NG C+   L EA+ L D+M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI   LVT N LI           A   L  +  +    +   Y+ +IDG  +    
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A   ++++ ++GL   ++TYN+++NG C +G + EA+++L +M E G  PD  +++++
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718

Query: 187 IQGFLVKNETDRASSF 202
           I G + ++    A  F
Sbjct: 719 INGHVSQDNMKEAFRF 734



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  +NG C        +   D  ++KGI  ++   ++LI G C    + +A E   KM+
Sbjct: 575 YGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMI 634

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + GI  +  +YN LI D + K+     A  L+  +E+   + NI  Y+L+++G C  G+ 
Sbjct: 635 SNGIIPDSFSYNTLI-DGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +EA + L ++ E G+ P   TY+ LING   +  + EA +   +M ++G  PD
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 1   FDLTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGL 50
           F L++   KG F     Y   IN  C+   ++ A +       +G+   +  Y++++ GL
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   +   A ++  +M+  G+T    TYN L+ +   +     A  +   + R     ++
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDL 397

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +S +I  L R G   +A     ++   G+VP  V Y ILI+G C+ G + +A K+  +
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDE 457

Query: 171 MKEKGCFPDSTSFNTVIQGFLVK 193
           M  +GCF D  ++NT + G   K
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKK 480



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 24  KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A     +KG+ + +   + L+ GL     +  A E++ ++V  GI   + T N
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +++   + +   + M  L  +E      +I  Y+ +I+  CR G  EEA + L+  S +
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR 321

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+ PG++TYN ++ GLCK G    A  +L++M + G  P++ ++NT++
Sbjct: 322 GMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +F+ +   I G CK   +D A       ++  +  D   Y++LI+G C   
Sbjct: 492 EMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAG 551

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A EL+D M+ + I  + ++Y  +++          A+ L   +       N+   +
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR G   +A + L ++   G++P   +YN LI+G  K+  + +A  L+ +M+++
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   +  ++N ++ GF  + +   A   L+K
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLRK 702



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDV--FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +R +G+ +++ ++S I           +Y  L+       +L+E  E F  +  +G++  
Sbjct: 162 VRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVS 221

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +   N L+           A  +   + R   ELN+   +++++ LC+  ++E     L 
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            +  KG+   +VTYN LIN  C++G++ EA +LL     +G  P   ++N ++ G     
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 195 ETDRASSFL 203
           + DRA   L
Sbjct: 342 KYDRAKDVL 350


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I+G+CK       +   D   ++GI  D F Y  +I+GLC   R+ +A  LF
Sbjct: 195 NVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLF 254

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM   G+  + VT N L++          A +LL+  E+D Y L++  YS +I GL R 
Sbjct: 255 DKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRA 314

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R+E+ +    ++ E  + P V  Y I++ GL + G + +A +LL +M E G  PD+  +
Sbjct: 315 KRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCY 374

Query: 184 NTVIQGF 190
           N +I+GF
Sbjct: 375 NVLIKGF 381



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C +  +D A        K G  LDV  YS LI GL    R ++   L+ KM+   +
Sbjct: 273 LNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNV 332

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++  Y  ++    E      A+ LL  +       +   Y+++I G C +G   EAR 
Sbjct: 333 KPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARS 392

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++S     P V TY+ILI+G+C+ G+  +A ++  +M++ GC+P + +FN++I G  
Sbjct: 393 LQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLC 452

Query: 192 VKNETDRASSFLKK 205
              + ++A     K
Sbjct: 453 KTGQLEKAHLLFYK 466



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 22/211 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI------REIDSAIKKGICL-DVFVYSSLINGLCTFN 54
           ++TE     +   Y + I G C +      R +   I +  C  +V  YS LI+G+C   
Sbjct: 361 EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNG 420

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--------------QT 100
             ++A E+F++M   G     VT+N LI D   K G+     LL              + 
Sbjct: 421 LTRDAQEIFNEMEKLGCYPSAVTFNSLI-DGLCKTGQLEKAHLLFYKMEIGRNPSLFLRL 479

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
            +   + L+      +++ LC  G   +A + L QL++ G  PG+ TYNIL+NG CK G 
Sbjct: 480 SQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGN 539

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              A KL  +M+ KG  PD+ ++ T+I G L
Sbjct: 540 FNGAYKLFREMQFKGLSPDTVTYGTLINGLL 570



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 82/147 (55%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A+E F  M     T ++ TYN ++    +K     A+ +   + +     N+  +S++I
Sbjct: 144 KAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILI 203

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+ G  ++A    D+++++G++P   TY ++I+GLC+   + +A +L  +MK+ G  
Sbjct: 204 DGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVG 263

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           PD  + N ++ GF + +  D A S L+
Sbjct: 264 PDFVTCNALLNGFCMLDRVDEAFSLLR 290



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 20/217 (9%)

Query: 11  NFHVYGIRINGMCK------IREIDSAIKKGICLDVFV-YSSLINGLCTFNRLKEAVELF 63
           N   Y I I+GMC+       +EI + ++K  C    V ++SLI+GLC   +L++A  LF
Sbjct: 405 NVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLF 464

Query: 64  DKM-----------VAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
            KM           ++QG +  L   +   ++    +      A  +L  L        I
Sbjct: 465 YKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGI 524

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++++G C++G +  A K   ++  KGL P  VTY  LINGL +     +A K+  Q
Sbjct: 525 YTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ 584

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           M++ GC PD+  + T++     + E  RA S   K +
Sbjct: 585 MEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYL 621



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  Y++++D L +      A     ++ +   +P V T++ILI+GLCK G + +A  L 
Sbjct: 160 DVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLF 219

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +M ++G  PD+ ++  VI G       D A     K
Sbjct: 220 DEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDK 256



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 41/204 (20%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y I +NG CK+   + A K       KG+  D   Y +LINGL  F R ++A ++FD+
Sbjct: 525 YTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ 584

Query: 66  MVAQGITAELVTYNPL----------------------------------IHDNWEKQGR 91
           M   G T +   Y  +                                  I   +EKQ  
Sbjct: 585 MEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEV 644

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+  L  ++    + ++  Y++ + GLC+  R  EA K    L E  +V        L
Sbjct: 645 EKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVITPPCCVKL 704

Query: 152 INGLCKKGMIMEADKLLVQMKEKG 175
           I  L K+G +  A  + +   EKG
Sbjct: 705 IYFLLKEGDLDRAIDVFLYTIEKG 728


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 14  VYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
            YG  + G+C++R+ D A   + +   L+V +++++I G     +L EA EL++ M  +G
Sbjct: 282 TYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKG 341

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
              +  TY+ L+H    K GR S A+ LL+ +E+  +  N+  Y++V+   C+ G W++ 
Sbjct: 342 CQPDAHTYSILMH-GLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R  L+++S KGL      YN +I  LCK G + EA  L+ +M+ +GC PD  S+NT+I  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIY- 459

Query: 190 FLVKNETDRASSFLKKNM 207
            L  NE    +  + +N+
Sbjct: 460 HLCNNEQMEEAEHMFENL 477



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I  +CK   +D A+        +G   D+  Y+++I  LC 
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +++EA  +F+ ++ +G+ A  +TYN +IH    + GR+  A+ L + +      L++ 
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIH-ALLRDGRWQDAVRLAKEMILHGCSLDVV 522

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  +C+ G  + +   L++++EKG+ P  V+YNILI+ LCK+  + +A +L  QM
Sbjct: 523 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 582

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +G  PD  ++NT+I G         A + L+K
Sbjct: 583 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 616



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + H Y I ++G+CK+  I SA+       KKG   +V  Y+ +++  C      +   
Sbjct: 343 QPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRA 402

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L ++M A+G+T     YN +I+    K GR   AM L+Q +       +I  Y+ +I  L
Sbjct: 403 LLEEMSAKGLTLNSQGYNGMIY-ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 461

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + EEA    + L E+G+V   +TYN +I+ L + G   +A +L  +M   GC  D 
Sbjct: 462 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV 521

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            S+N +I+        DR+   L++
Sbjct: 522 VSYNGLIKAMCKDGNVDRSLVLLEE 546



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  +  ++ G+C   R++EA  L D+M+ +G    ++TY  L+      +    A
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            A+L  +     ELN+ +++ VI G    G+  EA +  + +  KG  P   TY+IL++G
Sbjct: 300 RAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LCK G I  A +LL +M++KG  P+  ++  V+  F      D   + L++
Sbjct: 356 LCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 8/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y I ++  CK    D           KG+ L+   Y+ +I  LC   
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA+ L  +M +QG   ++ +YN +I+     +    A  + + L  +    N   Y+
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  L R GRW++A +   ++   G    VV+YN LI  +CK G +  +  LL +M EK
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEK 550

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  P++ S+N +I   L K    R +  L K M
Sbjct: 551 GIKPNNVSYNILISE-LCKERRVRDALELSKQM 582



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            F +      LC   R  EA+ L   M   G   + V Y  +IH   ++ G   A  LL 
Sbjct: 175 TFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLN 234

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +       ++  +  V+ G+C +GR  EA + +D++  KG +PGV+TY  L+ GLC+  
Sbjct: 235 EMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVR 294

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
              EA  +L ++ E     +   FNTVI G L + +   A+  
Sbjct: 295 QADEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATEL 333



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R     I  G  LDV  Y+ LI  +C    +  ++ L ++M  +GI    V+YN LI +
Sbjct: 506 VRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISE 565

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +++    A+ L + +       +I  Y+ +I+GLC++G    A   L++L  + + P 
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++TYNILI+  CK  ++ +A  LL +     C
Sbjct: 626 IITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLV 116
           A+ L D++  + G+     +YN ++           A+AL + +  RD+       + + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
              LCR+GR  EA   L  ++  G VP  V Y  +I+ LC +G + EA  LL +M   GC
Sbjct: 182 ARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             D  +F+ V++G         A+  + + M
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMM 272



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 57/112 (50%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL+ + R     +  +Y  VI  LC  G   EA   L+++   G    V T++ ++ 
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVR 253

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G+C  G + EA +L+ +M  KGC P   ++  ++QG     + D A + L +
Sbjct: 254 GMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 305


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 9/202 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC   RL +A  L ++M
Sbjct: 18  IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 77

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +L T+  LIH  +  +G+   A+ L  T+   +   +I  Y+ +IDG+CR G 
Sbjct: 78  RERGVPPDLCTFTTLIH-GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 136

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A    D +  + + P  VTY+ILI+  C+KG + +A   L +M  KG  P+  ++N+
Sbjct: 137 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 196

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I+G+       +   FL+K M
Sbjct: 197 IIKGYCRSGNVSKGQKFLQKMM 218



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK R +  A        ++G+  D+  +++LI+G C   +L +A++LFD M
Sbjct: 53  TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 112

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + Q +  ++VTYN LI D   +QG    A  L   +   +   N   YS++ID  C  G+
Sbjct: 113 LNQRLRPDIVTYNTLI-DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 171

Query: 126 WEEARKKLDQLSEKGLVPGV-----------------------------------VTYNI 150
            E+A   LD++  KG++P +                                   +TYN 
Sbjct: 172 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 231

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+G  K+  + +A KLL  M+++   PD  ++N +I GF V      A    +K
Sbjct: 232 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 286



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  +++ A       I KGI  ++  Y+S+I G C   
Sbjct: 146 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 205

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +  +   KM+   ++ +L+TYN LIH   ++     A  LL  +E++K + ++  Y+
Sbjct: 206 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 265

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G    G  +EA    +++  KG+ P   TY  +ING    G   EA +L  +M ++
Sbjct: 266 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 325

Query: 175 GCFPDS 180
           G  PD 
Sbjct: 326 GFAPDD 331



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D  +Y+ +I G C    + +A+ + D+MV  G   ++VTYN L++   +++    A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL  +       ++  ++ +I G C  G+ ++A +  D +  + L P +VTYN LI+G
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +C++G + +A+ L   M  +  FP+  +++ +I     K + + A  FL +
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE 181



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD +  QR + +   Y   I+GMC+  ++D A         + I  +   YS LI+  C 
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++++A    D+M+ +GI   ++TYN +I               LQ +  +K   ++  
Sbjct: 169 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 228

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G  +  +  +A K L+ + ++ + P VVTYN+LING    G + EA  +  +M 
Sbjct: 229 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 288

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KG  PD  ++ ++I G +    +  A
Sbjct: 289 AKGIEPDRYTYMSMINGHVTAGNSKEA 315


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 42/211 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y + ING+CK+         +D AI KG   D+F Y++LI+G C   
Sbjct: 390 EMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQL 449

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A E+ ++M +QG+T +++TYN L+                                
Sbjct: 450 KLDSATEMVNRMWSQGMTPDVITYNTLL-------------------------------- 477

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              +GLC+ G+ EE  +    + EKG  P ++TYNI+++ LCK   + EA  LL +MK K
Sbjct: 478 ---NGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSK 534

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  SF T+  GF    + D A    ++
Sbjct: 535 GLKPDVVSFGTLFTGFCKIGDIDGAYQLFRR 565



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 7/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y   I+G CK        R +  A+ KG   D F Y SLING C       A+
Sbjct: 291 FEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAM 350

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F   + +G+   +V YN LI    ++     A+ L+  +  +    NI  Y+LVI+GL
Sbjct: 351 AVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGL 410

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++G   +A   +D    KG  P + TYN LI+G CK+  +  A +++ +M  +G  PD 
Sbjct: 411 CKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDV 470

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++NT++ G     +++      K
Sbjct: 471 ITYNTLLNGLCKAGKSEEVMEIFK 494



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 16/221 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           + ++  + + + Y IRI   CK     +A++        G   +   Y +++ GL     
Sbjct: 137 MRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGE 196

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A ELFD+M+A+ +  ++V +N L+H   +K   F +  LL  + +     N+  +++
Sbjct: 197 HDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNI 256

Query: 116 VIDGLCRVG---------RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
            + GLCR G         R  EA + L ++   G  P  +TYN +I+G CKKGM+ +A++
Sbjct: 257 FVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +L     KG  PD  ++ ++I GF    + DRA +  K  +
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGL 357



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK----------------GICLDVFVYSSLINGLCTFN 54
           N   + I + G+C+   +D A++                 G   D   Y+S+I+G C   
Sbjct: 250 NLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKG 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A  +    V +G   +  TY  LI+   +      AMA+ +         +I +Y+
Sbjct: 310 MVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYN 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL + G    A + +++++E G +P + TYN++INGLCK G + +A  L+     K
Sbjct: 370 TLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAK 429

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD  ++NT+I G+  + + D A+  + +
Sbjct: 430 GCPPDIFTYNTLIDGYCKQLKLDSATEMVNR 460



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 89/160 (55%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V  +++++N L  F    +A +++ +M  +G+ +++ TY   I    +    ++A+ LL+
Sbjct: 111 VHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLR 170

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +     + N   Y  V+ GL   G  + AR+  D++  + L P VV +N L++ LCKKG
Sbjct: 171 NMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKG 230

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++ E+++LL ++ ++G  P+  +FN  +QG   +   DRA
Sbjct: 231 LVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRA 270



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 43/229 (18%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  ++DSA +       +G+  DV  Y++L+NGLC   + +E +E+F  M
Sbjct: 437 TYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAM 496

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG-- 124
             +G T  ++TYN ++    + +    A+ LL  ++    + ++  +  +  G C++G  
Sbjct: 497 EEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDI 556

Query: 125 --------RWEE--------------------------ARKKLDQLSEKGLVPGVVTYNI 150
                   R E+                          A K    +   G  P   TY +
Sbjct: 557 DGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRV 616

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +I+G CK G I +  K L++  EK   P  T+F  V+    VK++   A
Sbjct: 617 VIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEA 665



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y I ++ +CK ++++ A+        KG+  DV  + +L  G C    
Sbjct: 496 MEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGD 555

Query: 56  LKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  A +LF +M  Q  +     TYN ++    E+     AM L   ++    + +   Y 
Sbjct: 556 IDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYR 615

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VIDG C++G   +  K L +  EK  +P + T+  ++N LC K  + EA  ++  M +K
Sbjct: 616 VVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQK 675

Query: 175 GCFPDSTSFNTVIQG 189
           G  P++   NT+ + 
Sbjct: 676 GIVPETV--NTIFEA 688



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 85  NWEKQGRFSAMALLQTLER-DKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGL 141
           N+ ++G+      + T ER D Y  +  V+S   +++ L   G   +A K   ++ ++G+
Sbjct: 85  NYGRKGKVQEA--VDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV 142

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              V TY I I   CK      A +LL  M E GC  ++ ++ TV+ G     E D A
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHA 200


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + + +  ++   I+ +CK R +D A+        KGI  +V  YSSLI+ LC++ R  +A
Sbjct: 217 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 276

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
            +L   M+ + I   LVT+N LI D + K+G+F  A  L   + +   + +I  Y+ +++
Sbjct: 277 SQLLSDMIEKKINPNLVTFNALI-DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 335

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C   R ++A++  + +  K   P VVTYN LI G CK   + +  +L  +M  +G   
Sbjct: 336 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 395

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ ++ T+IQG     + D A    K+
Sbjct: 396 DTVTYTTLIQGLFHDGDCDNAQKVFKQ 422



 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 44/242 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    +   Y   +NG C    +D A       + K    DV  Y++LI G C   
Sbjct: 317 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 376

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWEK------------------ 88
           R+++  ELF +M  +G+  + VTY  LI         DN +K                  
Sbjct: 377 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 436

Query: 89  --------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                    G+   A+ +   +++ + +L+I +Y+ +I+G+C+ G+ ++       LS K
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 496

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VVTYN +I+GLC K ++ EA  LL +MKE G  P+S ++NT+I+  L   + D+A
Sbjct: 497 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL--RDGDKA 554

Query: 200 SS 201
           +S
Sbjct: 555 AS 556



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N + +G RI+    +  +D  ++ G   D   +++LI+GL   N+  EAV L D+MV +G
Sbjct: 125 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 182

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               LVTY  +++   ++     A+ LL  +E  K E ++ +++ +ID LC+    ++A 
Sbjct: 183 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 242

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               ++  KG+ P VVTY+ LI+ LC  G   +A +LL  M EK   P+  +FN +I  F
Sbjct: 243 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 302

Query: 191 L 191
           +
Sbjct: 303 V 303



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 94/172 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G   ++  Y  ++NGLC       A+ L +KM A  I A++V +N +I    +
Sbjct: 175 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 234

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L + +E      N+  YS +I  LC  GRW +A + L  + EK + P +VT
Sbjct: 235 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 294

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI+   K+G  +EA+KL   M ++   PD  ++N+++ GF + +  D+A
Sbjct: 295 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 346



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 12  FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            + Y I IN  C+  +I  A+       K G    +   SSL+NG C   R+ +AV L D
Sbjct: 82  LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 141

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +MV  G   + +T+  LIH  +       A+AL+  + +   + N+  Y +V++GLC+ G
Sbjct: 142 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 201

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             + A   L+++    +   VV +N +I+ LCK   + +A  L  +M+ KG  P+  +++
Sbjct: 202 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 261

Query: 185 TVIQGFLVKNETDRASSFL 203
           ++I           AS  L
Sbjct: 262 SLISCLCSYGRWSDASQLL 280



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM K R + S ++         ++ L++ +    +    + L +KM    I   L TYN 
Sbjct: 37  GMVKSRPLPSIVE---------FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 87

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI+    +     A+ALL  + +  YE +I   S +++G C   R  +A   +DQ+ E G
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P  +T+  LI+GL       EA  L+ +M ++GC P+  ++  V+ G   + +TD A 
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 201 SFLKK 205
           + L K
Sbjct: 208 NLLNK 212



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++ + K+++ D  I  G       I   ++ Y+ LIN  C  +++  A+ L  KM+  G 
Sbjct: 54  LSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY 113

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VT + L++     +    A+AL+  +    Y  +   ++ +I GL    +  EA  
Sbjct: 114 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 173

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +D++ ++G  P +VTY +++NGLCK+G    A  LL +M+      D   FNT+I    
Sbjct: 174 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 233

Query: 192 VKNETDRASSFLKK 205
                D A +  K+
Sbjct: 234 KYRHVDDALNLFKE 247



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +   G+   Y   I G+    + D+A       +  G+  D+  YS L++GLC   
Sbjct: 387 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 446

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L++A+E+FD M    I  ++  Y  +I    +         L  +L     + N+  Y+
Sbjct: 447 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 506

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC     +EA   L ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 507 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 566

Query: 175 GCFPDSTSFNTV 186
               D+++   V
Sbjct: 567 RFVGDASTIGLV 578


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G   DV  Y++LIN    F R+++A   F +M  QG+ A +VT++  + D + K+G  
Sbjct: 263 KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFV-DAFCKEGLV 321

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L   +       N   Y+ ++DG C+ GR ++A   LD++  +GLVP VVTY ++
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 381

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++GLCK+G + EAD +L  M+  G   +   + T+I G  + N ++RA   L +
Sbjct: 382 VDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQ 435



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+ LDV +Y +LI GLC   ++ EA  L  KM   G+    V Y  ++ D   K G+ S
Sbjct: 439 KGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIM-DALFKAGKES 497

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ALL  +    ++ N+  Y  +IDGLC+ G   EA    +++ E GL P V  Y  LI
Sbjct: 498 EAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALI 557

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +G CK G + +A  L+ +M +KG   D   + ++I G++
Sbjct: 558 DGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYM 596



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           ++  Q    N   Y + ++G+CK   + E D+ +    + G+  +  +Y++LI+G    N
Sbjct: 365 EMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNN 424

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             + A++L ++M  +G+  ++  Y  LI    + Q    A +LL  +       N  +Y+
Sbjct: 425 NSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYT 484

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D L + G+  EA   L ++ + G  P VVTY  LI+GLCK G I EA     +M+E 
Sbjct: 485 TIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMREL 544

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++  +I GF
Sbjct: 545 GLDPNVQAYTALIDGF 560



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  Q    N   +   ++  CK   +  A+K       +G+  + F Y+SL++G C   
Sbjct: 295 EMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL +A+ L D+MV QG+   +VTY  ++ D   K+G+ + A  +L  +ER   + N  +Y
Sbjct: 355 RLDDAIVLLDEMVHQGLVPNVVTYTVMV-DGLCKEGKVAEADNVLSLMERGGVKANELLY 413

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G       E A   L+Q+  KG+   V  Y  LI GLCK   + EA  LL +M  
Sbjct: 414 TTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAG 473

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P++  + T++       +   A + L K
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHK 505



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           +VF ++ +I+ LC    L EA  LF +M A G + ++VTYN LI D + K G    +  L
Sbjct: 199 NVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLI-DGYGKCGDLEEVEQL 257

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  + +     ++  Y+ +I+   + GR E+A     ++  +G+V  VVT++  ++  CK
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G++ EA KL  QM+ +G  P+  ++ +++ G       D A
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDA 359



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   Y   I+G+CK   I  AI         G+  +V  Y++LI+G C    L +A+
Sbjct: 511 FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAM 570

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L ++M+ +G++ + V Y  LI D + KQ     A AL   +     +L++  Y+  I G
Sbjct: 571 HLMNEMIDKGMSLDKVVYTSLI-DGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISG 629

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE--KGCF 177
            C +   +EAR  L ++   G+ P    YN LI    K G + EA  L  +M+     C 
Sbjct: 630 FCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCT 689

Query: 178 PDSTS 182
            D T+
Sbjct: 690 EDDTA 694



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA---IKK----GICLDVFVYSSLINGLCT 52
           L + + KG   +  +YG  I G+CK +++D A   + K    G+  +  +Y+++++ L  
Sbjct: 433 LNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFK 492

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +  EAV L  K++  G    +VTY  LI D   K G  S A++    +     + N++
Sbjct: 493 AGKESEAVALLHKILDSGFQPNVVTYCALI-DGLCKAGSISEAISHFNKMRELGLDPNVQ 551

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +IDG C++G   +A   ++++ +KG+    V Y  LI+G  K+  + +A  L  +M
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKM 611

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            E G   D   +   I GF   N    A   L +
Sbjct: 612 IESGLQLDLYCYTCFISGFCNMNMMQEARGVLSE 645



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G   +V  Y +LI+GLC    + EA+  F+KM   G+   +  Y  LI D + K G 
Sbjct: 507 LDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALI-DGFCKIGS 565

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + AM L+  +      L+  VY+ +IDG  +    ++A     ++ E GL   +  Y  
Sbjct: 566 LNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTC 625

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            I+G C   M+ EA  +L +M   G  PD T +N +I+ +      + ASS 
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSL 677



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N+  +++VID LC+ G   EAR    ++   G  P VVTYN LI+G  K G + E ++L+
Sbjct: 199 NVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLV 258

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            +M++ GC  D  ++N +I  F      ++A S+
Sbjct: 259 SEMRKSGCAADVVTYNALINCFSKFGRMEKAYSY 292



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VP V T+NI+I+ LCK+G ++EA  L V+MK  GC PD  ++N++I G+
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGY 245


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 44/241 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E         +G+ ING CK     +A++       +GI   V  Y+SLI+GLC+  
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 55  RLKEAVELF-----------------------------------DKMVAQGITAELVTYN 79
           +++E V+L                                    D M  + +  ++V YN
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 80  PLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D + + G+   AMA+ + + +     N+  Y+ +I G  R G W  A   LD++ E
Sbjct: 374 ILI-DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG+   VVTYN+LI  LC KG + +A KLL +M E G  P+  ++NT+IQGF  K     
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 199 A 199
           A
Sbjct: 493 A 493



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 18/204 (8%)

Query: 2   DLTEQRFKG--------NFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSL 46
           DL E+ F+         + + +   I+G+C+I ++  A      IK  G+   V  Y+SL
Sbjct: 173 DLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSL 232

Query: 47  INGLCT---FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           I+G C       +     L  +MV  GI+   VT+  LI+   +     +A+ + + +++
Sbjct: 233 IDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ 292

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                ++  Y+ +I GLC  G+ EE  K ++++ + GL P  +T+  ++ G CKKGM+ +
Sbjct: 293 QGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVI 187
           A+  +  M E+   PD   +N +I
Sbjct: 353 ANDWIDGMTERNVEPDVVIYNILI 376



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID   ++ +  DV +Y+ LI+      ++++A+ + + M  +GI+  + TYN LI   + 
Sbjct: 357 IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI-TGFS 415

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G + SA  LL  ++    E ++  Y+++I  LC  G   +A K LD++SE GL P  +
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN +I G C KG I  A ++  +M++     +  ++N  I+ F    + D A+  L +
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNE 534



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + +  +Y I I+   ++ +++ A+       KKGI  +V  Y+ LI G      
Sbjct: 360 MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A  L D+M  +GI A++VTYN LI     K     A+ LL  +     E N   Y+ 
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 116 VIDGLCRVGRWEEA---RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +I G C  G  + A   R ++++  ++     VVTYN+ I   C+ G + EA+ LL +M 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRA---NVVTYNVFIKYFCQIGKMDEANDLLNEML 536

Query: 173 EKGCFPDSTSFNTVIQGFLVKNET 196
           +K   P+  ++ T+ +G + K  T
Sbjct: 537 DKCLVPNGITYETIKEGMMEKGYT 560



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 32/176 (18%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           SA+++ +  D++ ++++I+GLC   +L++A ++   + A G+   + TYN LI D + K+
Sbjct: 181 SALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLI-DGYCKK 239

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           G    M  +  L                               L ++ E G+ P  VT+ 
Sbjct: 240 GGAGNMYHVDML-------------------------------LKEMVEAGISPTAVTFG 268

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +LING CK      A ++  +MK++G      ++N++I G   + + +     +++
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE 324


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+R   N + YG  ING CK  E+ +A         KG+ ++  ++++L++G C   
Sbjct: 322 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 381

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ L + M  +G   +  T N +         R  A  LL T+E      N+  +S
Sbjct: 382 MIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 441

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID  C+   + EAR+    + +KG  P VVTYN  I   CKKG + EA KL+ +M+E+
Sbjct: 442 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 501

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ ++ ++I G       DRA
Sbjct: 502 GLMPDTYTYTSLIDGERASGNVDRA 526



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 35/206 (16%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----- 83
           D  +KKGI  DV++Y+S+IN  C F  +K A  LFD+M  + +     TY  LI+     
Sbjct: 286 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 345

Query: 84  -----------------------------DNWEKQGRFSAMALLQTLERDK-YELNIEVY 113
                                        D + K+G       LQ + + K +E++    
Sbjct: 346 GEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTC 405

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++  G CR  R EEA++ L  + E+G+ P VV+++ILI+  CK+    EA +L   M++
Sbjct: 406 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEK 465

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           KG  P   ++N  I+ +  K + + A
Sbjct: 466 KGKAPSVVTYNAFIERYCKKGKMEEA 491



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCKIR------EIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           FK +   Y   +NG  +I+      EI S ++K +   +V  Y+ LI      ++++EA 
Sbjct: 223 FKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAE 282

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LFD+M+ +GI  ++  Y  +I+ N +      A  L   +   +   N   Y  +I+G 
Sbjct: 283 KLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGA 342

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  + A   ++ +  KG+    V +N L++G CKKGMI EA +L   M++KG   D+
Sbjct: 343 CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDA 402

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            + N +  GF   N  + A   L
Sbjct: 403 FTCNIIASGFCRSNRREEAKRLL 425



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 4/162 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS I+  +C     ++++++GLC    +  A  L D++V +G    ++TYN L++   E
Sbjct: 184 VDSGIEIRVC----SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 239

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +       +L  +E++  + N+  Y+++I+   R  + EEA K  D++ +KG+ P V  
Sbjct: 240 IKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 299

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           Y  +IN  CK G +  A  L  +M E+   P++ ++  +I G
Sbjct: 300 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALING 341



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KKG    V  Y++ I   C   +++EA +L ++M  +G+  +  TY  LI          
Sbjct: 465 KKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVD 524

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   + +     N+  Y+++I GL + GR +EA K  D+++++G+VP    Y+ LI
Sbjct: 525 RALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584

Query: 153 NGLCKKGMIM 162
             L K G ++
Sbjct: 585 ASLHKVGPLV 594



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 52/93 (55%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E+ +  ++ V+DGLC+ G    A+  +D+L  KG  P V+TYN L+NG  +   +   ++
Sbjct: 189 EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNE 248

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L  M++     + T++  +I+ +   ++ + A
Sbjct: 249 ILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEA 281



 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%)

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L R G  E   + L Q+ + G+   V ++  +++GLCKKG ++ A  L+ ++  KG  P
Sbjct: 166 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 225

Query: 179 DSTSFNTVIQGFL 191
              ++NT++ G++
Sbjct: 226 SVITYNTLLNGYI 238


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ++G CKI  +  A++        G+  +V  +  LI+GLC  + +  A +  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFL 321

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M + G+   +  YN LI D + K G  S A++L   +E+ +   ++  YS++I GLC 
Sbjct: 322 IDMASFGVVPNIFVYNCLI-DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V R EEA   L ++ +KG +P  VTYN LI+G CK+G + +A ++  QM EKG  P+  +
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 183 FNTVIQGF 190
           F+T+I G+
Sbjct: 441 FSTLIDGY 448



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 102/212 (48%), Gaps = 22/212 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK   +  A+       K  I  DVF YS LI GLC  +R++EA  L 
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  +G     VTYN LI D + K+G    A+ +   +     E NI  +S +IDG C+
Sbjct: 392 QEMKKKGFLPNAVTYNTLI-DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E A     ++  KGL+P VV Y  LI+G  K G   EA +L  +M+E G  P+  +
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 183 FNTVIQG-------------FLVKNETDRASS 201
            + +I G             FL K  TD   S
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   YG  I+G C+        R  D  I+K I   V +Y+ LI GLC  +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  +F  M   G+   L TYN ++    +      A+ L   +  D    N+  + 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFG 302

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGLC+      ARK L  ++  G+VP +  YN LI+G CK G + EA  L  ++++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  +++ +I+G    +  + A   L++
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQE 393



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 20/208 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y   I+G CK   ++ AI       +KGI  ++  +S+LI+G C   
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+ L+ +MV +G+  ++V Y  LI  +++      A  L + ++      N+   S
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 115 LVIDGLCRVGRWEEARK-------------KLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +IDGLC+ GR  +A K             K ++L      P  V Y  LI GLC  G I
Sbjct: 513 CLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRI 572

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +A K    M+  G  PD  +   +IQG
Sbjct: 573 FKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVF----VYSSLINGLCTFNRLKE 58
           L   +F  N  V+G+ I    ++  ++ A+     +DV       + +++GL    R   
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDT 176

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVI 117
             +++  MVA+G +  +VTY  LI D   +QG F  A  L   +   K    + +Y+++I
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLI-DGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC   R  EA      +   G++P + TYN +++G CK   + +A +L  +M   G  
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLL 295

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
           P+  +F  +I G    +E   A  FL
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFL 321



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 22/221 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + N   +   I+G CK  ++++A       + KG+  DV  Y++LI+G      
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL-------------QTL 101
            KEA  L  +M   G+   + T + LI D   K GR S A+ L                L
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLI-DGLCKDGRISDAIKLFLAKTGTDTTGSKTNEL 547

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +R     N  +Y+ +I GLC  GR  +A K    +   GL P V T  ++I G  +   +
Sbjct: 548 DRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHL 607

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            +   L   + + G  P+S+ +  + +G+        A SF
Sbjct: 608 RDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSF 648



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 92  FSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           FS M L++      Y++++    +  ++V+DGL + GR++   K    +  +G  P VVT
Sbjct: 136 FSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y  LI+G C++G  ++A +L  +M EK  FP    +  +I+G   ++    A S  +
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFR 252


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q F  +   Y   I G+ +I+E++ A++       +G C DV   + L+ GLC   R
Sbjct: 563 MVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYR 622

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA +L D++V +G    +VTYN LI D+W K G    AMALL  +  +  E N+  YS
Sbjct: 623 VREAEKLLDEIVVKGFFPSVVTYNLLI-DSWCKNGSVDKAMALLSRMSGEDREPNVITYS 681

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG CR  R ++A    +++  KG  P  + +  LI GLCK      A   L +M++K
Sbjct: 682 TLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQK 741

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
              PDS  +  +I  FL  ++ D AS+F
Sbjct: 742 DMKPDSFIYIALISSFL--SDMDLASAF 767



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+  LC      EA    D MV QG   ++V+Y+  I    + Q    A+ L   L    
Sbjct: 543 LVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRG 602

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +  ++   ++++ GLC+  R  EA K LD++  KG  P VVTYN+LI+  CK G + +A 
Sbjct: 603 HCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAM 662

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF----------LVKNETDRASSF 202
            LL +M  +   P+  +++T++ GF          LV NE +R   F
Sbjct: 663 ALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKGCF 709



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 42/233 (18%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFV-------YSSLINGLCTFNRLKEAVELFDKMV 67
           + I ING+ K  ++D A+     +  FV       Y++LIN LC  NRL+E+ EL  +M 
Sbjct: 435 FSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLREMK 494

Query: 68  AQGITAELVTYNPLI-----------------------HDNWEKQGRF------------ 92
             G+     TYN +                        H+ W K                
Sbjct: 495 ESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAI 554

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A   L ++ +  +  +I  YS  I GL ++     A +    L  +G  P VV  NIL+
Sbjct: 555 EACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILM 614

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GLCK   + EA+KLL ++  KG FP   ++N +I  +      D+A + L +
Sbjct: 615 RGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSR 667



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 14/198 (7%)

Query: 5   EQRFKG----NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTF 53
           E R KG    N + Y   +  + K  E+D    +       G   D F  + L+   C  
Sbjct: 162 EMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPLLQAYCNA 221

Query: 54  NRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            R  EA+ +++ M  +G +   + +   L    W    +  A  L++ +E     LN + 
Sbjct: 222 RRFDEALRVYNVMREKGWVDGHVCSMLALSFSKWGDVDK--AFELVERMEGHGMRLNEKT 279

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + ++I G  + GR + A +  D +   G  P V  +++LI GLC+ G    A  LL +MK
Sbjct: 280 FCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMK 339

Query: 173 EKGCFPDSTSFNTVIQGF 190
           E G  PD   F  +I  F
Sbjct: 340 EFGVTPDVGIFTKLISAF 357



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 34  KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KG+C+ + + Y+ L+  L     +       ++M   G   +  T  PL+   +    RF
Sbjct: 166 KGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPLLQ-AYCNARRF 224

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                +  + R+K  ++  V S++     + G  ++A + ++++   G+     T+ +LI
Sbjct: 225 DEALRVYNVMREKGWVDGHVCSMLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLI 284

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  K+G +  A +L   M   G  P  + F+ +I G     ++ RA S L +
Sbjct: 285 HGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSE 337


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+R   N + YG  ING CK  E+ +A         KG+ ++  ++++L++G C   
Sbjct: 318 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 377

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ L + M  +G   +  T N +         R  A  LL T+E      N+  +S
Sbjct: 378 MIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 437

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID  C+   + EAR+    + +KG  P VVTYN  I   CKKG + EA KL+ +M+E+
Sbjct: 438 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 497

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ ++ ++I G       DRA
Sbjct: 498 GLMPDTYTYTSLIDGERASGNVDRA 522



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 35/206 (16%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----- 83
           D  +KKGI  DV++Y+S+IN  C F  +K A  LFD+M  + +     TY  LI+     
Sbjct: 282 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 341

Query: 84  -----------------------------DNWEKQGRFSAMALLQTLERDK-YELNIEVY 113
                                        D + K+G       LQ + + K +E++    
Sbjct: 342 GEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTC 401

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++  G CR  R EEA++ L  + E+G+ P VV+++ILI+  CK+    EA +L   M++
Sbjct: 402 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEK 461

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           KG  P   ++N  I+ +  K + + A
Sbjct: 462 KGKAPSVVTYNAFIERYCKKGKMEEA 487



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCKIR------EIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAV 60
           FK +   Y   +NG  +I+      EI S ++K +   +V  Y+ LI      ++++EA 
Sbjct: 219 FKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAE 278

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LFD+M+ +GI  ++  Y  +I+ N +      A  L   +   +   N   Y  +I+G 
Sbjct: 279 KLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGA 338

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  + A   ++ +  KG+    V +N L++G CKKGMI EA +L   M++KG   D+
Sbjct: 339 CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDA 398

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            + N +  GF   N  + A   L
Sbjct: 399 FTCNIIASGFCRSNRREEAKRLL 421



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 4/162 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS I+  +C     ++++++GLC    +  A  L D++V +G    ++TYN L++   E
Sbjct: 180 VDSGIEIRVC----SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 235

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +       +L  +E++  + N+  Y+++I+   R  + EEA K  D++ +KG+ P V  
Sbjct: 236 IKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 295

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           Y  +IN  CK G +  A  L  +M E+   P++ ++  +I G
Sbjct: 296 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALING 337



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+CK  E+       D  + KG    V  Y++L+NG      +    E+   M    +
Sbjct: 195 VDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVV 254

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + TY  LI           A  L   + +   E ++ +Y+ +I+  C+ G  + A  
Sbjct: 255 DYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFV 314

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D+++E+ LVP   TY  LING CK G +  A+ ++  M+ KG   +   FNT++ G+ 
Sbjct: 315 LFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYC 374

Query: 192 VKNETDRA 199
            K   D A
Sbjct: 375 KKGMIDEA 382



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KKG    V  Y++ I   C   +++EA +L ++M  +G+  +  TY  LI          
Sbjct: 461 KKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVD 520

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   + +     N+  Y+++I GL + GR +EA K  D+++++G+VP    Y+ LI
Sbjct: 521 RALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580

Query: 153 NGLCKKGMIM 162
             L K G ++
Sbjct: 581 ASLHKVGPLV 590



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 52/93 (55%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E+ +  ++ V+DGLC+ G    A+  +D+L  KG  P V+TYN L+NG  +   +   ++
Sbjct: 185 EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNE 244

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L  M++     + T++  +I+ +   ++ + A
Sbjct: 245 ILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEA 277



 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%)

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L R G  E   + L Q+ + G+   V ++  +++GLCKKG ++ A  L+ ++  KG  P
Sbjct: 162 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 221

Query: 179 DSTSFNTVIQGFL 191
              ++NT++ G++
Sbjct: 222 SVITYNTLLNGYI 234


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 109/193 (56%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+G+CK        + +D+   KG   +   Y++LI+GLC   +L +AV L ++M
Sbjct: 259 IYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+       VTY  LI+   +++       LL ++E   Y LN  +YS++I GL + G+ 
Sbjct: 319 VSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKA 378

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA     +++EKG  P +V Y+ +I+GLC++G   EA ++L  M   GC P+  +++++
Sbjct: 379 EEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSL 438

Query: 187 IQGFLVKNETDRA 199
           ++GF     ++ A
Sbjct: 439 MKGFFKTGLSEEA 451



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
             + E+ ++ N H+Y + I+G+ K  + + A+       +KG   ++ VYS++I+GLC  
Sbjct: 351 ISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCRE 410

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +  EA E+ + M++ G    + TY+ L+   ++      A+ + + ++      N   Y
Sbjct: 411 GKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCY 470

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-- 171
           S++IDGLC VGR +EA     ++   G+ P  V Y+ +I GLC  G +  A KL  +M  
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLC 530

Query: 172 -KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +E    PD  ++N ++ G  ++ +  RA   L
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLL 563



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK--KGI----CL-DVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I  +CK+  +D AI+  +G+    CL D + Y +L++GLC   R+ EAV L D+M 
Sbjct: 190 FNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +   V YN LI D   K+G  S +  L+  +       N   Y+ +I GLC  G+ 
Sbjct: 250 SEGCSPSPVIYNVLI-DGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKL 308

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L+++     +P  VTY  LINGL K+   M+  +LL+ M+E+G   +   ++ +
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVL 368

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   + + + A +  KK
Sbjct: 369 ISGLFKEGKAEEAMTLWKK 387


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K +  +Y   ++G+C+  +++ A       +K+ I  +V  Y++LINGLC   
Sbjct: 34  EMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 93

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------------------------------- 83
           R++ A ELF +M  +G     V+YN LI                                
Sbjct: 94  RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 153

Query: 84  ---DNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              D   K G+  A A +L  + +     N+  YS +IDG C+V R +EA K L+Q+  +
Sbjct: 154 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 213

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VVTYNIL+N LC+   + +A KL   M ++ C P   ++NT+++      + D A
Sbjct: 214 GIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGA 273



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 109/246 (44%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +QR   N   Y   ING+CK   I++A +       KG       Y++LI+G C    
Sbjct: 70  MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 129

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A ++FDKMV       +VTY  LI D   K G+  A A +L  + +     N+  YS
Sbjct: 130 LVAAKDVFDKMVRSNCVPNVVTYTTLI-DGLSKSGKVQAAAEVLDGMVKKGVTPNVATYS 188

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL----------------------- 151
            +IDG C+V R +EA K L+Q+  +G+ P VVTYNIL                       
Sbjct: 189 CLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR 248

Query: 152 ------------INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                       +  LC    +  A +L  +M  KGC PD+ +++T+  G     +   A
Sbjct: 249 RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA 308

Query: 200 SSFLKK 205
              ++K
Sbjct: 309 QELMEK 314



 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  +  +CK + ID A+        +GI  D F+Y+ +++GLC   +++EA  LF+KM
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V Q I   +VTYN LI+   +     +A  L + +    Y      Y+ +IDG C+    
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 130

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A+   D++     VP VVTY  LI+GL K G +  A ++L  M +KG  P+  +++ +
Sbjct: 131 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 190

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF      D A   L++
Sbjct: 191 IDGFCKVRRVDEAHKLLEQ 209



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%)

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A+    + +TY P++    + +    A+A ++ +     + +  +Y+ V+ GLC+  + 
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR   +++ ++ + P VVTYN LINGLCK   I  A +L  +M  KG  P   S+NT+
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  K +   A     K
Sbjct: 121 IDGFCKKKDLVAAKDVFDK 139


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 12/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  Q  + N   Y   ING+C   ++D A+         G+  +V  Y++LING C   
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVY 113
            LKEA E+ D +  +G+   ++T+N LI D + K GR     LL+++  D     N+  Y
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLI-DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ--- 170
           + +I G CR G  +EARK   ++   GL   +VTYNIL++ LCKKG   +A +LL +   
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTL 502

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M++KG   +  ++N +I+GF  K + + A+  L
Sbjct: 503 MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLL 535



 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 115/213 (53%), Gaps = 9/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSLINGLCTFN 54
           ++  +R   N   + + ING+CK+ +   A      +K  G    V  Y+++I+G C   
Sbjct: 219 EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A  L  +MVA+ I    +T+N LI      +   +A  + + ++R   + N+  Y+
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYN 338

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  G+ +EA    D++S  GL P VVTYN LING CKK M+ EA ++L  + ++
Sbjct: 339 SLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  P+  +FNT+I  +      D A  FL ++M
Sbjct: 399 GLAPNVITFNTLIDAYGKAGRMDDA--FLLRSM 429



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +R   N   + I I+G C+   + +A K       +G+  +V  Y+SLINGLC+  
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L EA+ L DKM   G+   +VTYN LI+   +K+    A  +L  + +     N+  ++
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + GR ++A      + + G+ P V TYN LI G C++G + EA KL  +M+  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G   D  ++N ++     K ET +A   L
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLL 497



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    N   +   I+   K   +D A       +  G+C +V  Y+ LI G C   
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL---ERDKYELNIE 111
            +KEA +L  +M   G+ A+LVTYN L+    +K     A+ LL  +   E+     NI 
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIV 513

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            Y+++I G C  G+ EEA + L+++ EKGL+P   TY+IL + + +KG I + D
Sbjct: 514 TYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 567



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N  + SLV +G  R+G  E   K   ++  + +   VVT++++INGLCK G   +A  ++
Sbjct: 198 NPMLVSLVKEG--RIGVVESVYK---EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             MK  G  P   ++NT+I G+    +  +A + LK+
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKE 289


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 9/202 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC   RL +A  L ++M
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 392

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +L T+  LIH  +  +G+   A+ L  T+   +   +I  Y+ +IDG+CR G 
Sbjct: 393 RERGVPPDLCTFTTLIH-GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A    D +  + + P  VTY+ILI+  C+KG + +A   L +M  KG  P+  ++N+
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I+G+       +   FL+K M
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMM 533



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK R +  A        ++G+  D+  +++LI+G C   +L +A++LFD M
Sbjct: 368 TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 427

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + Q +  ++VTYN LI D   +QG    A  L   +   +   N   YS++ID  C  G+
Sbjct: 428 LNQRLRPDIVTYNTLI-DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 486

Query: 126 WEEARKKLDQLSEKGLVPGV-----------------------------------VTYNI 150
            E+A   LD++  KG++P +                                   +TYN 
Sbjct: 487 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 546

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+G  K+  + +A KLL  M+++   PD  ++N +I GF V      A    +K
Sbjct: 547 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 601



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  +++ A       I KGI  ++  Y+S+I G C   
Sbjct: 461 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 520

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +  +   KM+   ++ +L+TYN LIH   ++     A  LL  +E++K + ++  Y+
Sbjct: 521 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 580

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G    G  +EA    +++  KG+ P   TY  +ING    G   EA +L  +M ++
Sbjct: 581 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640

Query: 175 GCFPD 179
           G  PD
Sbjct: 641 GFAPD 645



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           G F   G   + M  +RE+      G+  D  +Y+ +I G C    + +A+ + D+MV  
Sbjct: 304 GLFARRGKMDHAMAYLREMRCF---GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC 360

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++VTYN L++   +++    A  LL  +       ++  ++ +I G C  G+ ++A
Sbjct: 361 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 420

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  D +  + L P +VTYN LI+G+C++G + +A+ L   M  +  FP+  +++ +I  
Sbjct: 421 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480

Query: 190 FLVKNETDRASSFL 203
              K + + A  FL
Sbjct: 481 HCEKGQVEDAFGFL 494



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD +  QR + +   Y   I+GMC+  ++D A         + I  +   YS LI+  C 
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++++A    D+M+ +GI   ++TYN +I               LQ +  +K   ++  
Sbjct: 484 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 543

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G  +  +  +A K L+ + ++ + P VVTYN+LING    G + EA  +  +M 
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KG  PD  ++ ++I G +    +  A
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGNSKEA 630



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 90/168 (53%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++ +  + +++  C      +   +  +M  + +  ++VT+N ++   +      +AMAL
Sbjct: 154 VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 213

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++     +  I  Y+ V+ GLCR G W++A +   ++ + G+ P V ++ ILI G C+
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G I EA K+  +M+ +G  PD  SF+ +I  F  + + D A ++L++
Sbjct: 274 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE 321



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS + KG+   +  Y+S++ GLC      +A E+F +M   G+  ++ ++  LI     
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + + +     + ++  +S +I    R G+ + A   L ++   GLVP  V 
Sbjct: 274 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 333

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y ++I G C+ G++ +A ++  +M   GC PD  ++NT++ G 
Sbjct: 334 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 376



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 11  NFHVYGIRINGMCKIRE---IDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I ++  CK  E   +D+ I    K+ +  DV  ++ +++        + A+ L 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 64  DKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           D MV++G+   +VTYN ++        W+K     A  + + ++      ++  ++++I 
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDK-----AWEVFKEMDDFGVAPDVRSFTILIG 269

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G CRVG  EEA K   ++  +G+ P +V+++ LI    ++G +  A   L +M+  G  P
Sbjct: 270 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 329

Query: 179 DSTSFNTVIQGF 190
           D   +  VI GF
Sbjct: 330 DGVIYTMVIGGF 341



 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 50/99 (50%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E+N    ++++   C+   +++    + ++ ++ + P VVT+N++++   + G    A  
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMA 212

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+  M  KG  P   ++N+V++G       D+A    K+
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 251


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 9/202 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I G C+       +R  D  +  G   DV  Y++L+NGLC   RL +A  L ++M
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 331

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +L T+  LIH  +  +G+   A+ L  T+   +   +I  Y+ +IDG+CR G 
Sbjct: 332 RERGVPPDLCTFTTLIH-GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A    D +  + + P  VTY+ILI+  C+KG + +A   L +M  KG  P+  ++N+
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I+G+       +   FL+K M
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMM 472



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK R +  A        ++G+  D+  +++LI+G C   +L +A++LFD M
Sbjct: 307 TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 366

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + Q +  ++VTYN LI D   +QG    A  L   +   +   N   YS++ID  C  G+
Sbjct: 367 LNQRLRPDIVTYNTLI-DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 425

Query: 126 WEEARKKLDQLSEKGLVPGV-----------------------------------VTYNI 150
            E+A   LD++  KG++P +                                   +TYN 
Sbjct: 426 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 485

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+G  K+  + +A KLL  M+++   PD  ++N +I GF V      A    +K
Sbjct: 486 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 540



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           G F   G   + M  +RE+      G+  D  +Y+ +I G C    + +A+ + D+MV  
Sbjct: 243 GLFARRGKMDHAMAYLREMRCF---GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC 299

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++VTYN L++   +++    A  LL  +       ++  ++ +I G C  G+ ++A
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  D +  + L P +VTYN LI+G+C++G + +A+ L   M  +  FP+  +++ +I  
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 190 FLVKNETDRASSFL 203
              K + + A  FL
Sbjct: 420 HCEKGQVEDAFGFL 433



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD +  QR + +   Y   I+GMC+  ++D A         + I  +   YS LI+  C 
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 422

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++++A    D+M+ +GI   ++TYN +I               LQ +  +K   ++  
Sbjct: 423 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 482

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G  +  +  +A K L+ + ++ + P VVTYN+LING    G + EA  +  +M 
Sbjct: 483 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 542

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KG  PD  ++ ++I G +    +  A
Sbjct: 543 AKGIEPDRYTYMSMINGHVTAGNSKEA 569



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y I I+  C+  +++ A       I KGI  ++  Y+S+I G C   
Sbjct: 400 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 459

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +  +   KM+   ++ +L+TYN LIH   ++     A  LL  +E++K + ++  Y+
Sbjct: 460 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 519

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+G    G  +EA    +++  KG+ P   TY  +ING    G   EA +L  +M ++
Sbjct: 520 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 579

Query: 175 G 175
           G
Sbjct: 580 G 580



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 90/168 (53%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++ +  + +++  C      +   +  +M  + +  ++VT+N ++   +      +AMAL
Sbjct: 93  VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + ++     +  I  Y+ V+ GLCR G W++A +   ++ + G+ P V ++ ILI G C+
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G I EA K+  +M+ +G  PD  SF+ +I  F  + + D A ++L++
Sbjct: 213 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE 260



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS + KG+   +  Y+S++ GLC      +A E+F +M   G+  ++ ++  LI     
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + + +     + ++  +S +I    R G+ + A   L ++   GLVP  V 
Sbjct: 213 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 272

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y ++I G C+ G++ +A ++  +M   GC PD  ++NT++ G 
Sbjct: 273 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 11  NFHVYGIRINGMCKIRE---IDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I ++  CK  E   +D+ I    K+ +  DV  ++ +++        + A+ L 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 64  DKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           D MV++G+   +VTYN ++        W+K     A  + + ++      ++  ++++I 
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDK-----AWEVFKEMDDFGVAPDVRSFTILIG 208

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G CRVG  EEA K   ++  +G+ P +V+++ LI    ++G +  A   L +M+  G  P
Sbjct: 209 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 268

Query: 179 DSTSFNTVIQGF 190
           D   +  VI GF
Sbjct: 269 DGVIYTMVIGGF 280



 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 50/99 (50%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E+N    ++++   C+   +++    + ++ ++ + P VVT+N++++   + G    A  
Sbjct: 92  EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMA 151

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+  M  KG  P   ++N+V++G       D+A    K+
Sbjct: 152 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C  R    A+         G+  DV  Y +LI GLC    + +AVEL  +M 
Sbjct: 116 YTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC 175

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI   +V Y+ L+   + K GR+  ++ + + +     E ++ +Y+ +ID LCR G+ 
Sbjct: 176 ESGIEPNVVVYSCLLQ-GYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + +D++ E+GL P VVTYN+LIN +CK+G + EA  L   M EKG   D+ ++NT+
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTL 294

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G     E D A   L++
Sbjct: 295 ITGLSGVLEMDEAMGLLEE 313



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 2/180 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G+  +V  Y+ LIN +C    +KEA+ L + M+ +G+  + VTYN LI     
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 88  KQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                 AM LL+ +   +   E N+  ++ VI GLC+ GR  +A +  D ++E G    +
Sbjct: 301 VLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNL 360

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VT+N+LI GL +   + +A +L+ +M   G  PDS +++ +I GF    + DRA S L K
Sbjct: 361 VTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSK 420



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I G+ ++ ++  A++        G+  D F YS LING C   ++  A  L 
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM   GI  ELV Y PL+    E+     A      + ++  +L++  YS +I G CR+
Sbjct: 419 SKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN-CKLDVVAYSTMIHGACRL 477

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A + L  + ++GL+P  VTY++LIN     G +  A+++L QM   G  PD   F
Sbjct: 478 RDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVF 537

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           +++I+G+  K +T++    +++
Sbjct: 538 DSLIKGYGAKGDTEKVLELIRE 559



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y++++  LC      +A     +++A       V+Y  L+     ++    A+ LL
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++      ++  Y  +I GLC     ++A + L ++ E G+ P VV Y+ L+ G CK 
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G      K+  +M  +G  PD   +  +I     + +  +A+  + K M
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMM 245



 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           FD   +  K +   Y   I+G C++R+  SA       + +G+  D   YS LIN     
Sbjct: 453 FDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANS 512

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L  A  +  +M A G   ++  ++ LI     K      + L++ +      L+ ++ 
Sbjct: 513 GDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKII 572

Query: 114 SLV 116
           S +
Sbjct: 573 STI 575


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VYG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F +M
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI     TYN ++   ++ +    A+ L + L     ++NI   + +I G+ +  R 
Sbjct: 631 TESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRV 690

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA+     +S  GLVP VVTY+I+I  L K+G++ EA+ +   M+  GC PDS   N V
Sbjct: 691 EEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHV 750

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L KNE  RA ++L K
Sbjct: 751 VRELLKKNEIVRAGAYLSK 769



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E+ S I   G+ LD+  +SS+IN LC   R
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G+    V Y+ L+ D +   G+   A+ +   +     E N  VY 
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ +KG+ P  + YNI+I+GL + G  + A     +M E 
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   +  ++N V++G L KN     + FL K +
Sbjct: 634 GIAMNKCTYNIVLRG-LFKNRCFDEAIFLFKEL 665



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G  K  +++ A       +++GI  D   YSS+++ LC    + +A     +M
Sbjct: 221 AYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+     TYN LI+  +   G++  A+ + + + R     ++   S+++  LC+ G+
Sbjct: 281 VNKGVLPNNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EAR   D ++ KG  P V +Y I++NG   KG +++   L   M   G  PD  +FN 
Sbjct: 340 IKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNV 399

Query: 186 VIQGFLVKNETDRA 199
           +I+ +      D+A
Sbjct: 400 LIKAYANCGMLDKA 413



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 4/169 (2%)

Query: 24  KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E     D+   KG   +VF Y+ ++NG  T   L +  +LFD M+  GI  ++ T+N
Sbjct: 339 KIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 398

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI           AM +   +     + ++  Y  VI  LCR+G+ ++A +K +Q+ ++
Sbjct: 399 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 458

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           G+ P    Y+ LI G C  G +++A +L+ ++   G   D   F+++I 
Sbjct: 459 GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 507



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  DV  Y ++I  LC   ++ +A+E F++M+ QG+  +   Y+ LI           A
Sbjct: 424 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 483

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+  +  +   L+I  +S +I+ LC++GR  +A+   D     GL P  V Y++L++G
Sbjct: 484 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C  G + +A ++   M   G  P+   + T++ G+      D   S  ++
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  YS++I+G      + +A +LF +MV +GI  + VTY+ ++H   + +    A A L
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +       N   Y+ +I G    G+W+EA +   ++    ++P VVT ++L+  LCK 
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  P+  S+  ++ G+  K
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATK 372



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      +  I  DV   S L+  LC + ++KEA ++FD M  +G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + +Y  +++    K        L   +  D    +I  ++++I      G  ++A  
Sbjct: 356 NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMI 415

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  +++ +IQGF 
Sbjct: 416 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 476 THGSLLKAKELISEIM 491



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+   ++  N L+    E +    A+ +L  L 
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDIL--LH 171

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV Y+ +I+G  
Sbjct: 172 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFF 230

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++++V+         D+A +FL++
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279



 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 28/173 (16%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           ++TE     N   Y I + G+ K R          C D                  EA+ 
Sbjct: 629 EMTESGIAMNKCTYNIVLRGLFKNR----------CFD------------------EAIF 660

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF ++ A  +   ++T N +I   ++ +    A  L  ++ R      +  YS++I  L 
Sbjct: 661 LFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLI 720

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + G  EEA      +   G  P     N ++  L KK  I+ A   L ++ E+
Sbjct: 721 KEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDER 773


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 44/241 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E         +G+ ING CK     +A++       +GI   V  Y+SLI+GLC+  
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 55  RLKEAVELF-----------------------------------DKMVAQGITAELVTYN 79
           +++E V+L                                    D M  + +  ++V YN
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 80  PLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D + + G+   AMA+ + + +     N+  Y+ +I G  R G W  A   LD++ E
Sbjct: 374 ILI-DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG+   VVTYN+LI  LC KG + +A KLL +M E G  P+  ++NT+IQGF  K     
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 199 A 199
           A
Sbjct: 493 A 493



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 18/204 (8%)

Query: 2   DLTEQRFKG--------NFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSL 46
           DL E+ F+         + + +   I+G+C+I ++  A      IK  G+   V  Y+SL
Sbjct: 173 DLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSL 232

Query: 47  INGLCT---FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           I+G C       +     L  +MV  GI+   VT+  LI+   +     +A+ + + +++
Sbjct: 233 IDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ 292

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                ++  Y+ +I GLC  G+ EE  K ++++ + GL P  +T+  ++ G CKKGM+ +
Sbjct: 293 QGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVI 187
           A+  +  M E+   PD   +N +I
Sbjct: 353 ANDWIDGMTERNVEPDVVIYNILI 376



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID   ++ +  DV +Y+ LI+      ++++A+ + + M  +GI+  + TYN LI   + 
Sbjct: 357 IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI-TGFS 415

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G + SA  LL  ++    E ++  Y+++I  LC  G   +A K LD++SE GL P  +
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN +I G C KG I  A ++  +M++     +  ++N  I+ F    + D A+  L +
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNE 534



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + +  +Y I I+   ++ +++ A+       KKGI  +V  Y+ LI G      
Sbjct: 360 MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A  L D+M  +GI A++VTYN LI     K     A+ LL  +     E N   Y+ 
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 116 VIDGLCRVGRWEEA---RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +I G C  G  + A   R ++++  ++     VVTYN+ I   C+ G + EA+ LL +M 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRA---NVVTYNVFIKYFCQIGKMDEANDLLNEML 536

Query: 173 EKGCFPDSTSFNTVIQGFLVKNET 196
           +K   P+  ++ T+ +G + K  T
Sbjct: 537 DKCLVPNGITYETIKEGMMEKGYT 560



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 32/176 (18%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           SA+++ +  D++ ++++I+GLC   +L++A ++   + A G+   + TYN LI D + K+
Sbjct: 181 SALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLI-DGYCKK 239

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           G    M  +  L                               L ++ E G+ P  VT+ 
Sbjct: 240 GGAGNMYHVDML-------------------------------LKEMVEAGISPTAVTFG 268

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +LING CK      A ++  +MK++G      ++N++I G   + + +     +++
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE 324


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N   Y + ING+C+   ++EI   +    K+G  LD   Y++LI G C      +A+
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M+  G++  ++TY  LIH   +      A   L  +       N   Y+ ++DG 
Sbjct: 331 VMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G   EA + L ++ + G  P VVTYN LING C  G +++A  +L  MKEKG  PD 
Sbjct: 391 SQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDV 450

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S++TV+ GF    + D A
Sbjct: 451 VSYSTVLSGFCRSYDVDEA 469



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+    +   Y   ++G C+  ++D A++       KGI  D   YSSLI G C   
Sbjct: 440 DMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQR 499

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R KEA +LFD+M+  G+  +  TY  LI+    +     A+ L   +       ++  YS
Sbjct: 500 RTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYS 559

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+GL +  R  EA++ L +L  +  VP  VTY+ LI                G C KG
Sbjct: 560 VLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKG 619

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M+ EAD++   M EK   PD T++N +I G     +  +A S  K+
Sbjct: 620 MMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKE 665



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ + +   N   Y I I G C    +D A+       KKG   +V  Y++LI+G C   
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVY 113
           ++ +  EL   M  +G+   L++YN +I +   ++GR   ++ + T + +  Y L+   Y
Sbjct: 255 KIDDGFELLRSMALKGLEPNLISYNVVI-NGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+ G + +A     ++   GL P V+TY  LI+ +CK G +  A + L QM+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P+  ++ T++ GF  K   + A   LK+
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLKE 405



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 12/210 (5%)

Query: 1   FDLTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           F LTE   +G   +   Y   I G CK      A+       + G+   V  Y+SLI+ +
Sbjct: 296 FVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSM 355

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELN 109
           C    +  A E  D+M  +G+     TY  L+ D + ++G  + A  +L+ +  + +  +
Sbjct: 356 CKAGNMNRATEFLDQMRVRGLCPNERTYTTLV-DGFSQKGYMNEAYRVLKEMIDNGFSPS 414

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I+G C  G+  +A   L+ + EKGL P VV+Y+ +++G C+   + EA ++  
Sbjct: 415 VVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M  KG  PD+ +++++IQGF  +  T  A
Sbjct: 475 KMVAKGIKPDTITYSSLIQGFCEQRRTKEA 504



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +  F  +   Y   ING C   ++  AI       +KG+  DV  YS++++G C   
Sbjct: 405 EMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSY 464

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ +  KMVA+GI  + +TY+ LI    E++    A  L   + R     +   Y+
Sbjct: 465 DVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYT 524

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G  ++A +  +++ EKG++P VVTY++LINGL K+    EA +LL+++  +
Sbjct: 525 ALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYE 584

Query: 175 GCFPDSTSFNTVIQ 188
              P   +++T+I+
Sbjct: 585 ESVPSDVTYHTLIE 598



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ MCK   ++ A +       +G+C +   Y++L++G      + EA  +  +M
Sbjct: 347 TYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM 406

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G +  +VTYN LI+ +        A+A+L+ ++      ++  YS V+ G CR    
Sbjct: 407 IDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDV 466

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +   ++  KG+ P  +TY+ LI G C++    EA  L  +M   G  PD  ++  +
Sbjct: 467 DEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTAL 526

Query: 187 IQGFLVKNETDRA 199
           I  + ++ +  +A
Sbjct: 527 INAYCMEGDLQKA 539



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +   I  G    V  Y++LING C   ++ +A+ + + M  +G+T ++V+Y+ ++   
Sbjct: 401 RVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGF 460

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ + + +     + +   YS +I G C   R +EA    D++   GL P  
Sbjct: 461 CRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDE 520

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            TY  LIN  C +G + +A +L  +M EKG  PD  +++ +I G   +  T  A   L K
Sbjct: 521 FTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLK 580



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 14  VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+ R         D  ++ G+  D F Y++LIN  C    L++A++L ++M
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546

Query: 67  VAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYELNIEVYSLV--------- 116
           V +G+  ++VTY+ LI+  N + + R +   LL+    +    ++  ++L+         
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFK 606

Query: 117 -----IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
                I G C  G   EA +  + + EK   P    YN++I+G C+ G I +A  L  +M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 172 KEKG 175
            + G
Sbjct: 667 VKSG 670



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEKGLVPGVVTYNILI 152
           A++++   +   +   +  Y+ V+D   R  R    A     ++ +  + P V TYNILI
Sbjct: 153 ALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILI 212

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G C  G +  A +   +M++KGC P+  ++NT+I G+
Sbjct: 213 RGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGY 250



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 22/180 (12%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  C   ++  AI+       KG+  DV  YS LINGL    R +EA  L  K+
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581

Query: 67  VAQGITAELVTYNPLIHD--NWEKQGRFS-------------AMALLQTLERDKYELNIE 111
             +      VTY+ LI +  N E +   S             A  + +++    ++ +  
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGT 641

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I G CR G   +A     ++ + G +   VT   L+  L K+G + E + ++  +
Sbjct: 642 AYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANV 701


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 45/248 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L     K +  +Y   IN +CK + +  A       I KGI  DV  Y++LI+G C   +
Sbjct: 189 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGK 248

Query: 56  LKEA--------------------------------------VELFDKMVAQGITAELVT 77
           +KEA                                      + LF++M  + +  ++VT
Sbjct: 249 MKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVT 308

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           YN LI    +      A+ALL+ ++    + ++  Y++++DGLC+ GR E A++    L 
Sbjct: 309 YNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            KG    V  YN++INGLCK G+  EA  L  +M+ KGC P++ +F T+I     K+E D
Sbjct: 369 VKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDEND 428

Query: 198 RASSFLKK 205
           +A   L++
Sbjct: 429 KAEKILRE 436



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRIN----GMCKIREI-------DSAIKKGICLDVFVYSSLING 49
           F +     K  FH   I +N    G+C   EI       D  + +G  LD   Y +LING
Sbjct: 113 FSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLING 172

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC     K    L  K+    +  ++V YN +I+   + +    A  +   +       +
Sbjct: 173 LCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 232

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG---MIMEADK 166
           +  Y+ +I G C +G+ +EA   L+++  K + P V T+++LI+ L K+G   M+ EA  
Sbjct: 233 VVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMS 292

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L  +MK K   PD  ++N++I G    +  +RA + LK+
Sbjct: 293 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKE 331



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQ 89
           GI  D+   S LIN  C    +  A  +F  ++ +G   + +T N LI         +K 
Sbjct: 88  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
             F    + Q  + D+       Y  +I+GLC+ G  +   + L +L    + P VV YN
Sbjct: 148 LYFHDQVVAQGFQLDQVS-----YGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYN 202

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +IN LCK  ++ +A  +  +M  KG  PD  ++ T+I GF +  +   A S L
Sbjct: 203 TIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLL 256



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K +  D+  Y+SLI+GLC  + L+ A+ L  +M   GI  ++ +Y  L+ D   K GR  
Sbjct: 300 KNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILL-DGLCKGGRLE 358

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A    Q L      LN+  Y+++I+GLC+ G + EA     ++  KG +P  +T+  +I
Sbjct: 359 IAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTII 418

Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
             L +K    +A+K+L +M  +G
Sbjct: 419 CALSEKDENDKAEKILREMIARG 441



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +++ ++  L +  R+        Q    G+ P + T +ILIN  C +  I  A  +   +
Sbjct: 60  LFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANI 119

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            ++G  PD+ + NT+I+G   + E  +   F
Sbjct: 120 LKRGFHPDAITLNTLIKGLCFRGEIKKTLYF 150


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K +  +Y   ++G+C+  +++ A       +K+ I  +V  Y++LINGLC   
Sbjct: 139 EMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 198

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------------------------------- 83
           R++ A ELF +M  +G     V+YN LI                                
Sbjct: 199 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 258

Query: 84  ---DNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              D   K G+  A A +L  + +     N+  YS +IDG C+V R +EA K L+Q+  +
Sbjct: 259 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 318

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P VVTYNIL+N LC+   + +A KL   M ++ C P   ++NT+++      + D A
Sbjct: 319 GIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGA 378



 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 8/198 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I+ +CK+   D A K       K        YS++IN LC  NR++EA EL +KM 
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM- 106

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A+    + +TY P++    + +    A+A ++ +     + +  +Y+ V+ GLC+  + E
Sbjct: 107 ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EAR   +++ ++ + P VVTYN LINGLCK   I  A +L  +M  KG  P   S+NT+I
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226

Query: 188 QGFLVKNETDRASSFLKK 205
            GF  K +   A     K
Sbjct: 227 DGFCKKKDLVAAKDVFDK 244



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 109/246 (44%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +QR   N   Y   ING+CK   I++A +       KG       Y++LI+G C    
Sbjct: 175 MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 234

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
           L  A ++FDKMV       +VTY  LI D   K G+  A A +L  + +     N+  YS
Sbjct: 235 LVAAKDVFDKMVRSNCVPNVVTYTTLI-DGLSKSGKVQAAAEVLDGMVKKGVTPNVATYS 293

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL----------------------- 151
            +IDG C+V R +EA K L+Q+  +G+ P VVTYNIL                       
Sbjct: 294 CLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR 353

Query: 152 ------------INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                       +  LC    +  A +L  +M  KGC PD+ +++T+  G     +   A
Sbjct: 354 RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA 413

Query: 200 SSFLKK 205
              ++K
Sbjct: 414 QELMEK 419



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 6/204 (2%)

Query: 6   QRFKGNFHVYGIRINGMCKI------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEA 59
           +RFK     Y   IN +CK+      RE+   + +    D   Y  ++  LC   R+ +A
Sbjct: 74  KRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDA 133

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +   ++M  +GI  +   YN ++    +++    A  L + + + +   N+  Y+ +I+G
Sbjct: 134 LATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLING 193

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+  R E A +   +++ KG VP  V+YN LI+G CKK  ++ A  +  +M    C P+
Sbjct: 194 LCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPN 253

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             ++ T+I G     +   A+  L
Sbjct: 254 VVTYTTLIDGLSKSGKVQAAAEVL 277



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  + +     T+N  + D + K GR   +  + Q +    Y L    Y ++I  LC+VG
Sbjct: 1   MALRRVIPGAATFN-TVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVG 59

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            ++EA K L  +  K      + Y+ +IN LCK   + EA +L+ +M  +   PD+ ++ 
Sbjct: 60  NFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYG 118

Query: 185 TVIQGFLVKNETDRA 199
            +++        D A
Sbjct: 119 PIVERLCKTKRIDDA 133



 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ V DG  + GR E+ ++    + E G       Y ILI+ LCK G   EA KLL  M
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + K     + +++T+I      N  + A   ++K
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEK 105


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 9/183 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK + ++  +K       +G+  D F Y++LI+G C   +L  A ++F++M
Sbjct: 326 TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 385

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V  G++ ++VTYN L+ D     G+   A+ +++ L++ + +++I  Y+++I GLCR  +
Sbjct: 386 VDCGVSPDIVTYNILL-DCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDK 444

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA      L+ KG+ P  + Y  +I+GLC+KG+  EADKL  +MKE G  P    ++ 
Sbjct: 445 LKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDE 504

Query: 186 VIQ 188
            ++
Sbjct: 505 TLR 507



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N  +Y   ING+CK R++++A+       KKGI  D   Y++LI+GL    R  +A 
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
            L   MV + I   ++ +  LI D + K+G    A  L + + R     N+  Y+ +I+G
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI-DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C  G   +A+   D +  KG  P VVTYN LI G CK   + +  KL  +M  +G   D
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358

Query: 180 STSFNTVIQGF 190
           + ++NT+I G+
Sbjct: 359 AFTYNTLIHGY 369



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 37/195 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA----------------------- 68
           +K G    +    SL+NG C  NR +EAV L D M                         
Sbjct: 141 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 200

Query: 69  ------------QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
                       +GI A+ VTYN LI       GR++ A  LL+ + + K + N+  ++ 
Sbjct: 201 NNALEVFYCMEKKGIRADAVTYNTLI-SGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID   + G   EAR    ++  + +VP V TYN LING C  G + +A  +   M  KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 176 CFPDSTSFNTVIQGF 190
           CFPD  ++NT+I GF
Sbjct: 320 CFPDVVTYNTLITGF 334



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING C            D  + KG   DV  Y++LI G C   R+++ ++LF
Sbjct: 288 NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 347

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  QG+  +  TYN LIH   +      A  +   +       +I  Y++++D LC  
Sbjct: 348 CEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A   ++ L +  +   ++TYNI+I GLC+   + EA  L   +  KG  PD+ ++
Sbjct: 408 GKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 467

Query: 184 NTVIQGFL---VKNETDRASSFLKKN 206
            T+I G     ++ E D+    +K++
Sbjct: 468 ITMISGLCRKGLQREADKLCRRMKED 493



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 78/148 (52%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ ++  +   N+    + L+ KM   GI+ +L ++  LIH          A+ALL  + 
Sbjct: 82  FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 141

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +  +I     +++G C+  R++EA   +D +   G VP VV YN +INGLCK   + 
Sbjct: 142 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 201

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            A ++   M++KG   D+ ++NT+I G 
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGL 229



 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL +     +   Y I I G+C+  ++  A        +KG+  D   Y ++I+GLC   
Sbjct: 419 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
             +EA +L  +M   G       Y+  + D++
Sbjct: 479 LQREADKLCRRMKEDGFMPSERIYDETLRDHY 510


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 14/200 (7%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y I +  +C+  E   A+        + G+   +  Y+++INGLC  N L   +ELF+++
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G   ++VTYN LI D+  K G    A  L   +       N+  YS++I+GLC+VGR
Sbjct: 243 VERGHHPDVVTYNTLI-DSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGR 301

Query: 126 WEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDST 181
            +EAR+ + +++ K   ++P ++TYN  ++GLCK+ M  EA +L+  +++      PD+ 
Sbjct: 302 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 361

Query: 182 SFNTVIQGFLVKNETDRASS 201
           +F+T+I G     + D A S
Sbjct: 362 TFSTLIDGLCKCGQIDEACS 381



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 114/216 (52%), Gaps = 10/216 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  +  + +   +G  I+G+CK  ++++A          G+  +V  Y++L++GLC   
Sbjct: 592 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 651

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++EA +  ++MV+ G   + +TY  L++          A+ L+  L+   ++ +   Y+
Sbjct: 652 RIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYN 711

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-- 172
           +++DGL + G+ E+A   L+++  KG  P VVTYN LI+ LCK G + EA +L   M   
Sbjct: 712 ILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR 771

Query: 173 -EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             + C P+  +++ +I G       D A   +++ M
Sbjct: 772 VSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           D + ++  INGL     +  A++++++M+   +  + VT+N LI     K G F  A AL
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGAC-KAGNFEQASAL 589

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + +     + ++  +  +IDGLC+ G+ E AR  LD +   G+ P VVTYN L++GLCK
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G I EA + L +M   GC PDS ++ +++      + TD A
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 13/210 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC---LDVFVYSSLINGLCT 52
           D++ +    N   Y + ING+CK+  ID A      + +  C    ++  Y+S ++GLC 
Sbjct: 276 DMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK 335

Query: 53  FNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELN 109
            +   EA EL   +      ++ + VT++ LI D   K G+   A ++   +    Y  N
Sbjct: 336 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLI-DGLCKCGQIDEACSVFDDMIAGGYVPN 394

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +++GLC+  + E A   ++ + +KG+ P V+TY++L++  CK   + EA +LL 
Sbjct: 395 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 454

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            M  +GC P+  +FN++I G    + +  A
Sbjct: 455 GMASRGCTPNVVTFNSIIDGLCKSDRSGEA 484



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 14  VYGIRINGMCKIREIDSA----------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            Y   I+ +CK  +++ A          + +    +V  YS LINGLC   R+ EA EL 
Sbjct: 744 TYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELI 803

Query: 64  DKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDG 119
            +M+ +   +   ++TYN  +    ++     A  L+++L      ++ +   +S +IDG
Sbjct: 804 QEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDG 863

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G+ +EA    D +   G VP VVTYN+L+NGLCK   +  A  ++  M +KG  PD
Sbjct: 864 LCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPD 923

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
             +++ ++  F   +  D A   L 
Sbjct: 924 VITYSVLVDAFCKASHVDEALELLH 948



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 108/201 (53%), Gaps = 13/201 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKG--ICLDVFVYSSLINGLCTFNRLKEAVE 61
           N   Y + ING+CK+  ID A       ++K   +  ++  Y+S ++GLC  + + EA E
Sbjct: 779 NVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACE 838

Query: 62  LFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           L   +      ++ + VT++ LI D   K G+   A  +   +    Y  N+  Y+++++
Sbjct: 839 LMRSLRDGSLRVSPDTVTFSTLI-DGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMN 897

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC+  + E A   ++ + +KG+ P V+TY++L++  CK   + EA +LL  M  +GC P
Sbjct: 898 GLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTP 957

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  +FN++I G    +++  A
Sbjct: 958 NVVTFNSIIDGLCKSDQSGEA 978



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 10/203 (4%)

Query: 11  NFHVYGIRINGMCKIR------EIDSAIKKG---ICLDVFVYSSLINGLCTFNRLKEAVE 61
           N   Y   ++G+CK        E+  +++ G   +  D   +S+LI+GLC   ++ EA  
Sbjct: 322 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 381

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FD M+A G    ++TYN L++   +      A A+++++       ++  YS+++D  C
Sbjct: 382 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 441

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDS 180
           +  R +EA + L  ++ +G  P VVT+N +I+GLCK     EA ++   M  K G  PD 
Sbjct: 442 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDK 501

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++ T+I G        +A + L
Sbjct: 502 ITYCTLIDGLFRTGRAGQAEALL 524



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 10/191 (5%)

Query: 11   NFHVYGIRINGMCKIR------EIDSAIKKG---ICLDVFVYSSLINGLCTFNRLKEAVE 61
            N   Y   ++G+CK        E+  +++ G   +  D   +S+LI+GLC   +  EA  
Sbjct: 816  NIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 875

Query: 62   LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            +FD M+A G    +VTYN L++   +      A A+++++       ++  YS+++D  C
Sbjct: 876  VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935

Query: 122  RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDS 180
            +    +EA + L  ++ +G  P VVT+N +I+GLCK     EA ++   M  K G  PD 
Sbjct: 936  KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDK 995

Query: 181  TSFNTVIQGFL 191
             ++ T+I G  
Sbjct: 996  ITYCTLIDGLF 1006



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 41/232 (17%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++  CK   +D A++       +G   +V  ++S+I+GLC  +R  EA ++FD M
Sbjct: 432 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDM 491

Query: 67  -VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL-ERDKYELN-------------- 109
            +  G+  + +TY  LI D   + GR   A ALL  + + D Y  N              
Sbjct: 492 ALKHGLVPDKITYCTLI-DGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSR 550

Query: 110 -IEVYS---------------LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            ++VY+               ++I G C+ G +E+A    +++  K L P V+T+  LI+
Sbjct: 551 ALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 610

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK G +  A  +L  M   G  P+  ++N ++ G       + A  FL++
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 662



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 46/230 (20%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
            D+    +  N   Y + +NG+CK  +       I+S + KG+  DV  YS L++  C  +
Sbjct: 879  DMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 938

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQTLERDKYEL 108
             + EA+EL   M ++G T  +VT+N +I        + E    F  M L   L  DK   
Sbjct: 939  HVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKI-- 996

Query: 109  NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG---------------------------- 140
                Y  +IDGL R G   +A   LD + +                              
Sbjct: 997  ---TYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELE 1053

Query: 141  LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            LVP  VT+NILI G CK G   +A  L  +M  K   PD  +F  +I G 
Sbjct: 1054 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 1103



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 16/207 (7%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G+ K  + + AI        KG   DV  Y++LI+ LC    L+EA  L   M
Sbjct: 709 TYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 768

Query: 67  ---VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL--NIEVYSLVIDGL 120
              V++     +VTY+ LI +   K GR   A  L+Q + R   ++  NI  Y+  +DGL
Sbjct: 769 SSRVSRCCVPNVVTYSVLI-NGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGL 827

Query: 121 CRVGRWEEARKKLDQLSEKGL--VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           C+     EA + +  L +  L   P  VT++ LI+GLCK G   EA  +   M   G  P
Sbjct: 828 CKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVP 887

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  ++N ++ G    ++ +RA + ++ 
Sbjct: 888 NVVTYNVLMNGLCKTDKMERAHAMIES 914



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%)

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           + RD     I  Y+ +I+GLC+        +  ++L E+G  P VVTYN LI+ LCK G 
Sbjct: 207 MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGD 266

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA +L   M  + C P+  +++ +I G       D A   +++
Sbjct: 267 LEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQE 311



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 39   DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
            D + ++  INGL   ++L +      +M+   +  + VT+N LI     K G F  A AL
Sbjct: 1025 DTYAFNCCINGL---SKLGDVSRALHRMLELELVPDKVTFNILIAGAC-KAGNFEQASAL 1080

Query: 98   LQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             + +     + ++  +  +IDGLC+ G+ E
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110


>gi|297726211|ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
 gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 44/249 (17%)

Query: 1    FDLTEQRFKGNFHV--YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC 51
            F  TEQ       V  Y   I+G C   ++D A+K        G+  D   YS+LING C
Sbjct: 1194 FSRTEQAHPSEVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYC 1253

Query: 52   TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              +R++ A+ LF +MV  G++  ++TYN ++   ++     +A  +   + +   +L I 
Sbjct: 1254 KISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEIS 1313

Query: 112  VYSLVIDGLC-----------------------------------RVGRWEEARKKLDQL 136
              ++V+ GLC                                   R GR +E++     L
Sbjct: 1314 TCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAAL 1373

Query: 137  SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            S  GL P VVTY ++I  L + G++ E+D L + M++ GC P+S   N +++  L K E 
Sbjct: 1374 SANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEI 1433

Query: 197  DRASSFLKK 205
             RA  +L K
Sbjct: 1434 GRAGVYLSK 1442


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 100/173 (57%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   D F Y+SLI GL    R ++A+EL ++M   G   +++TY+ LI    +     
Sbjct: 142 ERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETV 201

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L Q ++R   + +   ++ ++D L + GR ++A + LD++ E+G+ PGVVTYN LI
Sbjct: 202 KAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  K G ++EA  LL +MK  GC PD  +++ +I G +  ++ D A   LKK
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKK 314



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I G+ K  ++D A        K+G   D   Y++LINGL     L +A  
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LFD+M ++G   ++VTY+ LI    +     SA  L + +E    + ++  Y  +I  L 
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLG 405

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ ++A +   ++  KGL P V+TYN  +N L + G   EA K+   MKE G  PD  
Sbjct: 406 KAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVA 465

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +++ ++ G     E D A   LK+
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKE 489



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   Y   I G+ K  E   A K       +G   D   +++L++ L    R+ +A+EL 
Sbjct: 183 DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL 242

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G+   +VTYN LI    +      A  LL  ++R+  + ++  YS +I GL + 
Sbjct: 243 DEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKA 302

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +EA + L ++ ++G  P  +TYN LINGL K G++ +A +L  +MK KGC PD  ++
Sbjct: 303 SQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362

Query: 184 NTVIQGF 190
           +T+I   
Sbjct: 363 STLITAL 369



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           +V  Y+SL+N L    + +EA  LF+++ A   T ++V+Y+ LI+ +  + G++ +A+ +
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLIN-SLGRAGKWEAALEV 66

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  ++    + N+  Y+ ++D L + G+++EA + L ++ + G VP V TYN LI+ L K
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA  L  +M+E+GC PD+ ++N++I G      + +A   L++
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEE 174



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   ++ + K  + D A++        G   DV  Y+ LI+ L    RL EA  
Sbjct: 76  KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFT 135

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +M  +G   +  TYN LI+    K GR   AM LL+ +ER     ++  YS +I GL
Sbjct: 136 LFAEMRERGCVPDTFTYNSLIY-GLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL 194

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G   +A K   ++  +G  P  +T+  L++ L K G + +A +LL +MKE+G  P  
Sbjct: 195 GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGV 254

Query: 181 TSFNTVIQGF 190
            ++N +I GF
Sbjct: 255 VTYNALIAGF 264



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           DV  YS LIN L    + + A+E+  +M A+G    L TYN L+ D   K G+F  A+ L
Sbjct: 43  DVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLV-DCLGKAGQFDEALRL 101

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +  +    ++  Y+ +I  L + GR  EA     ++ E+G VP   TYN LI GL K
Sbjct: 102 LAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGK 161

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   +A +LL +M+  GC PD  +++++I G     ET +A
Sbjct: 162 VGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKA 203



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+ K        R  D    KG   DV  YS+LI  L    R++ A  LF++M
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + GI  +L TY  +I    +      A  L   +       ++  Y+  ++ L R GR+
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EARK  + + E GL+P V TY+ L+ GL K   + +A  LL ++ E+GC  DS  F+  
Sbjct: 446 KEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDEC 505

Query: 187 IQGFLVKNETDRASSFLK 204
           ++        D A   L+
Sbjct: 506 LEILTSWGNVDEAHELLQ 523



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+  DV  Y++ +N L    R KEA ++F+ M   G+  ++ TY+ L+    + +    
Sbjct: 423 KGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDD 482

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  LL+ L       +   +   ++ L   G  +EA + L   + KGL PG  +YN LI+
Sbjct: 483 ACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALID 542

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L K G + EA   L  +KE+G  PD  S++++I       + D A   L++
Sbjct: 543 ALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEE 594



 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           P VVTYN L+N L K G   EA  L  ++K     PD  S++ +I
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLI 51


>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   +NG CKI  ID  +       ++GI     +YS +I+GL    R   A   F
Sbjct: 53  NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKF 112

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++ TYN ++   ++ +    A+ L + L     ++NI   + +IDG+ + 
Sbjct: 113 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 172

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R EEA+     +S   LVP VVTY+I+I  L K+G++ EA+ +   M+  GC P+S   
Sbjct: 173 RRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLL 232

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V++  L KNE  RA ++L K
Sbjct: 233 NHVVRELLKKNEIVRAGAYLSK 254



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G+  D  VYS L++G C   ++++A+ +FD MV+ GI   +V Y  L+ + + K
Sbjct: 8   DLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV-NGYCK 66

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR    ++L + + +   + +  +YS++IDGL + GR   A+ K  +++E G+   + T
Sbjct: 67  IGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICT 126

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YNI++ GL K     EA  L  +++      +  + NT+I G       + A
Sbjct: 127 YNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 178


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 97/171 (56%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+G   D + Y +LI+GLC F R+ EA +LF +MV +     +VTY  LI+     +   
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD 244

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AM  L+ ++    E N+  YS ++DGLC+ GR  +A +  + +  +G  P +VTY  LI
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            GLCK+  I EA +LL +M  +G  PD+  +  VI GF   ++   A++FL
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFL 355



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 48/254 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+        Y   ING+C  + +D A++       KGI  +VF YSSL++GLC   
Sbjct: 217 EMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDG 276

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  +A+ELF+ M+A+G    +VTY  LI    ++Q    A+ LL  +     + +  +Y 
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYG 336

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI------------------------ 150
            VI G C + ++ EA   LD++   G+ P  +T+NI                        
Sbjct: 337 KVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLY 396

Query: 151 -----------------LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
                            L+  LCKKG   +A +L+ ++   GC P   ++  +I   L K
Sbjct: 397 LSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDK 456

Query: 194 NETDRASSFLKKNM 207
                AS  L +++
Sbjct: 457 TIVGEASDTLLRDL 470



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 9/184 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  I+G+C+   ID A       ++K     V  Y+SLINGLC    + EA+   ++
Sbjct: 193 YTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M ++GI   + TY+ L+ D   K GR   AM L + +       N+  Y+ +I GLC+  
Sbjct: 253 MKSKGIEPNVFTYSSLM-DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + +EA + LD+++ +GL P    Y  +I+G C      EA   L +M   G  P+  ++N
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN 371

Query: 185 TVIQ 188
             ++
Sbjct: 372 IHVK 375



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           + E GL P V + N+LI  LC+    ++A  K+ ++M ++GC PDS ++ T+I G     
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 195 ETDRA 199
             D A
Sbjct: 207 RIDEA 211


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  I+G+CK  ++       D+ +  G   +  +Y +LI+G C   ++  A E+F
Sbjct: 443 NVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVF 502

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G    + TY  LI   ++ +    AM +L  +       N+  Y+ +IDGLCR+
Sbjct: 503 LRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRI 562

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++A K L  + EKG  P VVTY  LI+GL K G +  + +L +QM  KGC P+  ++
Sbjct: 563 GECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTY 622

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I         D A S L +
Sbjct: 623 RVLINHCCAAGLLDEAHSLLSE 644



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+G CK+ +ID+A        K G    V  Y+SLI+ +    RL  A+++ 
Sbjct: 478 NHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVL 537

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV    T  +VTY  +I D   + G    A+ LL  +E      N+  Y+ +IDGL +
Sbjct: 538 SQMVESSCTPNVVTYTAMI-DGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGK 596

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ + + +   Q+S KG  P  VTY +LIN  C  G++ EA  LL +MK+         
Sbjct: 597 SGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQG 656

Query: 183 FNTVIQGF 190
           + +V+QGF
Sbjct: 657 YCSVVQGF 664



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 51/210 (24%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA----------------QGITAEL 75
           I  G   +   YS+L++GLC    +++A E++ K++                   I   +
Sbjct: 385 IDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNV 444

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR----- 130
           VTY  LI    +      A  LL  +  +  E N  +Y  +IDG C+VG+ + A+     
Sbjct: 445 VTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLR 504

Query: 131 ------------------------------KKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
                                         K L Q+ E    P VVTY  +I+GLC+ G 
Sbjct: 505 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGE 564

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +A KLL  M+EKGC P+  ++  +I G 
Sbjct: 565 CQKALKLLSMMEEKGCSPNVVTYTALIDGL 594



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK   I+ A          G   +V  Y++L++      +L +A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----------------ERDKY 106
           ++M+  G     +TY+ L+ D   K G       + T                    D  
Sbjct: 382 NRMIDAGCPPNTITYSALV-DGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSI 440

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  +IDGLC+  +  +A++ LD +   G  P  + Y+ LI+G CK G I  A +
Sbjct: 441 APNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQE 500

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + ++M + G  P   ++ ++I         D A   L +
Sbjct: 501 VFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQ 539



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 43/240 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N   Y   I+G+C+I E   A+K       KG   +V  Y++LI+GL    +
Sbjct: 540 MVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGK 599

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD--------------------NWEK--QGRFS 93
           +  +++LF +M  +G     VTY  LI+                      W K  QG  S
Sbjct: 600 VDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCS 659

Query: 94  -----------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA---RKKLDQLSEK 139
                      ++ LL+ LE         VY L+ID   + GR EEA    K++ +LS  
Sbjct: 660 VVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSS 719

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +     Y  LI  LC    + +A +L  ++  KG  P+ + F  +I+G +  N+ + A
Sbjct: 720 LNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEA 779



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 12  FHVYGIRINGMCKIREIDS----AIKKGICLDVFVYSSLING---------LCTFNRLKE 58
           +  Y I I  +C   E+ S    A+ + +  ++   S ++N          LC   +   
Sbjct: 212 YVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDM 271

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++   M+ +G   +  TY+ +I    E      A  L Q ++      ++  Y+++ID
Sbjct: 272 AFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILID 331

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G  E+AR   D++   G    VVTY  L++   K   + +A  +  +M + GC P
Sbjct: 332 SFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPP 391

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ +++ ++ G     E  +A     K
Sbjct: 392 NTITYSALVDGLCKAGEIQKACEVYTK 418



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++L+  L T  ++     +  +M   G   +  T          K+GR+S   ++  +
Sbjct: 42  TYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVG-CFAQALCKEGRWSDALVM--I 98

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ER+ ++L+  + + +I GL     ++EA   L ++     +P VVTY  L+ G  KK  +
Sbjct: 99  EREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQL 158

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               +++  M ++GC P+ + FN+++  +    +   A   LK+
Sbjct: 159 GWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKR 202



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD  + + +I+GL   +   EA+    +M        +VTY  L+    +K+       +
Sbjct: 105 LDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRI 164

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC- 156
           +  + ++    N  +++ ++   C    +  A K L ++++ G  PG V YNI I  +C 
Sbjct: 165 INMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICG 224

Query: 157 -----KKGMIMEADKLLVQMKEKGC 176
                   ++  A+K+  +M    C
Sbjct: 225 GEELPSPDLLALAEKVYEEMLASSC 249



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 45/217 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y   I+G+ K  ++D +++       KG   +   Y  LIN  C    
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGL 634

Query: 56  LKEAVELFDKM--------------VAQGITAELVT-------------------YNPLI 82
           L EA  L  +M              V QG + + +                    Y  LI
Sbjct: 635 LDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLI 694

Query: 83  HDNWEKQGRFS-AMALLQTLERDKYELNI---EVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            DN+ K GR   A+ L + +      LNI   ++Y+ +I  LC   + E+A +   +++ 
Sbjct: 695 -DNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITR 753

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           KG+VP +  +  LI GL K     EA +L   + ++G
Sbjct: 754 KGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G C+D F        LC   R  +A+ + ++   +    + V    +I    E     
Sbjct: 68  ESGFCMDKFTVGCFAQALCKEGRWSDALVMIER---EDFKLDTVLCTQMISGLMEASLFD 124

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A++ L  +  +    N+  Y  ++ G  +  +    ++ ++ + ++G  P    +N L+
Sbjct: 125 EAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLV 184

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +  C       A KLL +M + GC P   ++N  I
Sbjct: 185 HSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFI 219


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   ++G C         R  D   +KG+  D   Y++LINGLC    LKEA ++  +M
Sbjct: 366 VYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEM 425

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +A+ +  + VTY  L+ D + K+G+ + A  +  T+ +     N+  Y+ + DGLC+ G 
Sbjct: 426 LARRLDVDEVTYTVLV-DGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGD 484

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A + L ++S KGL     TYN LINGLCK G + +A + +  M   G  PD  ++ T
Sbjct: 485 VQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTT 544

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I       E DRA   L++
Sbjct: 545 LIDALCKSGELDRAHDLLQE 564



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G CK  ++  A       +++G+  +V  Y++L +GLC    ++ A EL  +M
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEM 495

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+     TYN LI+   +      AM  +  ++    + ++  Y+ +ID LC+ G  
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L ++ + G+ P +VTYN+L+NG C  G +    KLL  M EK   P++T++N++
Sbjct: 556 DRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSL 615

Query: 187 IQGFLVKNETDRASSFLK 204
           ++ + + N     +   K
Sbjct: 616 MKQYCIGNNMKSTTEIYK 633



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           DV  Y  LI+G C    L+ AV+L D MVA+G+      Y  ++    +K GR S A+ +
Sbjct: 293 DVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDK-GRVSDALTV 351

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ +   K  L+  VY+ V+ G C  G    AR+  D++  KGL    VTY  LINGLC+
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCR 411

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G + EA+K+L +M  +    D  ++  ++ G+
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGY 444



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI I+G C + E+++A+K       +G+  +  VY+S++  LC   R+ +A+ + + M
Sbjct: 296 TYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDM 355

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V   +  +   Y  ++     K    SA      ++R     +   Y+ +I+GLCR G  
Sbjct: 356 VHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGEL 415

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K L ++  + L    VTY +L++G CK+G + EA ++   M ++G  P+  ++  +
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475

Query: 187 IQGFLVKNETDRASSFLKK 205
             G   + +   A+  L +
Sbjct: 476 SDGLCKQGDVQAANELLHE 494



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y    +G+CK  ++ +A         KG+ L+   Y+SLINGLC    L +A+   
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTM 527

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M A G+  ++ TY  LI D   K G    A  LLQ +  +  +  I  Y+++++G C 
Sbjct: 528 ADMDAAGLKPDVYTYTTLI-DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR E  +K L+ + EK + P   TYN L+   C    +    ++   M  +   P+  +
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646

Query: 183 FNTVIQGFLVKNETDRASSF 202
           +N +I+G         A  F
Sbjct: 647 YNILIKGHCKARSMKEAQYF 666



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ L+  LC   R+++A +LFD+M +     ++VTY  LIH         +A+ LL
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLL 317

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +     E N  VY+ V+  LC  GR  +A   ++ +    ++     Y  +++G C K
Sbjct: 318 DDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNK 377

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G ++ A +   +M+ KG   D  ++ T+I G     E   A   L++
Sbjct: 378 GDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQE 424



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+     K + + Y   I+ +CK  E+D A       +  GI   +  Y+ L+NG C   
Sbjct: 529 DMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSG 588

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++   +L + M+ + I     TYN L+          S   + + +     E N   Y+
Sbjct: 589 RVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYN 648

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C+    +EA+   +++ EKG      +Y+ LI  L KK   +EA KL   M+++
Sbjct: 649 ILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKE 708

Query: 175 GCFPDSTSFNTVI 187
           G   +   +N  I
Sbjct: 709 GFTAEPDVYNFYI 721



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + +NG C    ++         ++K I  +   Y+SL+   C  N +K   E++  M
Sbjct: 576 TYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGM 635

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++ +     TYN LI  + + +    A      +    + L    YS +I  L +  ++
Sbjct: 636 CSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKF 695

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
            EARK    + ++G       YN  I+
Sbjct: 696 VEARKLFHDMRKEGFTAEPDVYNFYID 722


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+CK   ++ A K       +G+  D   Y++L++G C    L EA+ +F +M  +G+
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++VT+  LIH          A+AL+  +      +N   ++ +IDG CR G  ++A  
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + ++ E  + P VV YN+LING CK G + EA +L+ +M+ KG  PD  +++T++ G+ 
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 192 VKNETDRASSFLKK 205
              +TD A    +K
Sbjct: 412 KIGDTDSAFELNRK 425



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E R + +   Y + ING CK+  +D A +       KG+  DV  YS++++G C   
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A EL  KM+ +G+  + +TY+ LI    E++    A  L + + +   + +   Y+
Sbjct: 415 DTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYT 474

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G  ++A    D++ +KG++P VVTY++LI+GL K     EA +LL ++  +
Sbjct: 475 TLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYE 534

Query: 175 GCFPDSTSFNTVIQ 188
              PD+  +  ++ 
Sbjct: 535 DPVPDNIKYEALMH 548



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK   +  A+       +KG+  DV  ++SLI+ +C    L+ AV L  +M 
Sbjct: 263 YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMR 322

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+     T+  LI D + + G    A+  ++ +   + + ++  Y+++I+G C++GR 
Sbjct: 323 ERGLRMNEFTFTALI-DGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRM 381

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EAR+ + ++  KG+ P VVTY+ +++G CK G    A +L  +M +KG  PD+ +++++
Sbjct: 382 DEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G   +     A    +K
Sbjct: 442 IRGLCEERRLGDACELFEK 460



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K +   Y   ++G CKI + DSA       +KKG+  D   YSSLI GLC   
Sbjct: 390 EMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEER 449

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A ELF+KM+  G+  +  TY  LI  + ++     A++L   + +     ++  YS
Sbjct: 450 RLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYS 509

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++IDGL +  R +EA++ L +L  +  VP  + Y  L++               G   KG
Sbjct: 510 VLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKG 569

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ +ADK+   M ++    D + ++ +I G        +A SF K+
Sbjct: 570 LMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQ 615



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 102/192 (53%), Gaps = 9/192 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+ MC+   ++ A+       ++G+ ++ F +++LI+G C    L +A+    +M    I
Sbjct: 302 IHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +V YN LI + + K GR   A  L+  +E    + ++  YS ++ G C++G  + A 
Sbjct: 362 QPSVVCYNVLI-NGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +   ++ +KG+VP  +TY+ LI GLC++  + +A +L  +M + G  PD  ++ T+I G 
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 191 LVKNETDRASSF 202
             +    +A S 
Sbjct: 481 CKEGNVQKALSL 492



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    L+ YN ++          SA  LL ++ RD    N+  Y++++  LC  G+ EEA
Sbjct: 115 GYAPSLLAYNAVLL-ALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 130 RKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
              + D +   G  P VVTYN L+   C+ G +  A++L+  M+E G  P   +FNTV+ 
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 189 GF 190
           G 
Sbjct: 234 GL 235



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 24/197 (12%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +       D  IKKG+  DV  YS LI+GL    R KEA  L  K+
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL----------------QTLERDKYELNI 110
             +    + + Y  L+H     + + S +ALL                Q++    ++L+ 
Sbjct: 532 YYEDPVPDNIKYEALMHCCRTAEFK-SVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDG 590

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            VYS++I G CR G   +A     QL   G  P   +   L+ GL ++GM +EAD ++ +
Sbjct: 591 SVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQE 650

Query: 171 MKEKGCFPDSTSFNTVI 187
           +       D+ +   +I
Sbjct: 651 LLNCCSLADAETSKALI 667



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+ L  +   G+ P V TYNIL+  LC +G   EA 
Sbjct: 116 YAPSLLAYNAVLLALSDAS-LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 166 KLLVQ-MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++   M+  GC P+  ++NT++  F    E D A
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAA 209


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   +NG CKI  ID  +       ++GI     +YS +I+GL    R   A   F
Sbjct: 568 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKF 627

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++ TYN ++   ++ +    A+ L + L     ++NI   + +IDG+ + 
Sbjct: 628 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 687

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R EEA+     +S   LVP VVTY+I+I  L K+G++ EA+ +   M+  GC P+S   
Sbjct: 688 RRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLL 747

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V++  L KNE  RA ++L K
Sbjct: 748 NHVVRELLKKNEIVRAGAYLSK 769



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E+ S I   G+ LD+  +SS+IN LC   R
Sbjct: 455 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G+  + V Y+ L+ D +   G+   A+ +   +     E N+ VY 
Sbjct: 515 VMDAQNIFDLTVNVGLHPDAVVYSMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYC 573

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ ++G+ P  + Y+I+I+GL + G  + A     +M E 
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTES 633

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   D  ++N V++G L KN     + FL K +
Sbjct: 634 GIAMDICTYNIVLRG-LFKNRCFDEAIFLFKEL 665



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 84/155 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+++I+G      + +A +LF +MV +GI  +LVTYN ++H   + +    A A L
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +   +   N   Y+ +I G    G+W+EA +   ++    ++P VVT ++L+  LCK 
Sbjct: 278 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+N ++ G+  K
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F+ + + I        +D A+         G+  DV  Y ++I  LC   ++ +A+E F
Sbjct: 393 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+ QG+  +   YN LI           A  L+  +  +   L+I  +S +I+ LC++
Sbjct: 453 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A+   D     GL P  V Y++L++G C  G + +A ++   M   G  P+   +
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 572

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T++ G+      D   S  ++
Sbjct: 573 CTLVNGYCKIGRIDEGLSLFRE 594



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K  +++ A       +++GI  D+  Y+S+++ LC    + +A    
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV + +     TYN LI+  +   G++  A+ + + + R     ++   S+++  LC+
Sbjct: 278 RQMVNKRVLPNNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ +EAR   D ++ KG  P V +YNI++NG   KG +++   L   M   G  PD  +
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 183 FNTVIQGFLVKNETDRA 199
           FN +I+ +      D+A
Sbjct: 397 FNVLIKAYANCGMLDKA 413



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      +  I  DV   S L+  LC + ++KEA ++FD M  +G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +YN +++    K        L   +  D    +   ++++I      G  ++A  
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 415

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  ++N +IQGF 
Sbjct: 416 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 475

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 476 THGSLLKAKELISEIM 491



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+   ++  N L+    E +    A+ +L  L 
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDIL--LH 171

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV YN +I+G  
Sbjct: 172 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFF 230

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++N+V+         D+A +FL++
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 279


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 10/192 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   ++G+CK   +  A +        G   DV  YSS + GLC   ++ +A 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAH 242

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALL-QTLERDKYELNIEVYSLVID 118
           ++ ++M        +VTYN ++ D   K G+  +A+ ++ Q    D   LN+  YS V+D
Sbjct: 243 QVLEQMRDSHHDPNVVTYNTIL-DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVD 301

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC++GR +EAR  ++ ++  G  P VVTY+ L+NGLCK G I EA + + +M  +GC P
Sbjct: 302 GLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKP 361

Query: 179 DSTSFNTVIQGF 190
           ++ ++ +++ G 
Sbjct: 362 NAVTYCSLVHGL 373



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 105/194 (54%), Gaps = 15/194 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y   ++G+CK  +ID+A++         G  L+V  YS++++GLC   R +EA  +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSV 315

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
            + M   G   ++VTY+ L+ +   K G+   A+  ++ +  +  + N   Y  ++ GLC
Sbjct: 316 MEAMARAGCRPDVVTYSSLV-NGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 122 RVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
             GR  EA + ++++S  G       P V TYN LI GLCK G I +A K   +M+ +GC
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGC 434

Query: 177 FPDSTSFNTVIQGF 190
            PD  S++T+++G 
Sbjct: 435 DPDGVSYSTIVEGL 448



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 8/189 (4%)

Query: 19  INGMCKIREI---DSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+ + +   DS ++K    G+  DV  Y++L++GLC   RL+EA +L ++M A G 
Sbjct: 159 ISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++V Y+  ++   +      A  +L+ +    ++ N+  Y+ ++DGLC+ G+ + A +
Sbjct: 219 APDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALE 278

Query: 132 KLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            ++Q+ S  G    VV Y+ +++GLCK G   EA  ++  M   GC PD  ++++++ G 
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 191 LVKNETDRA 199
               + + A
Sbjct: 339 CKAGKIEEA 347



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   +   Y   ++G CK  +++ +       I +G+  D  +Y+ ++  LC   RL EA
Sbjct: 77  RSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEA 136

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +EL ++M+  G    L+T+N LI     ++    A +LLQ +     + ++  Y+ ++DG
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDG 196

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ GR +EA + L+++   G  P VV Y+  + GLCK G +++A ++L QM++    P+
Sbjct: 197 LCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPN 256

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++NT++ G     + D A   +++
Sbjct: 257 VVTYNTILDGLCKSGKIDTALEMMEQ 282



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFS-AMA 96
           +V  Y+++++GLC   ++  A+E+ ++M +  G    +V Y+ ++ D   K GR   A +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV-DGLCKLGRTQEARS 314

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ + R     ++  YS +++GLC+ G+ EEA + + +++ +G  P  VTY  L++GLC
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 157 KKGMIMEADKLLVQM-----KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G + EA++++ +M         C P  +++N +I G       D A  F ++
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKG--ICLDVFVYSSLINGLCTF 53
           +  +  + N   Y   + G+CK+     A       I +G     D+  YS+L++G C  
Sbjct: 36  MAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKA 95

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +++E+ EL  +++++G+  + + Y  ++    +      A+ LL+ + R      +  +
Sbjct: 96  GKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITF 155

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR    E A   L +++  G+   VVTYN L++GLCK G + EA++LL +MK 
Sbjct: 156 NTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKA 215

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC PD  ++++ + G 
Sbjct: 216 SGCAPDVVAYSSFVYGL 232



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 26/181 (14%)

Query: 11  NFHVYGIRINGMCKI------REIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK+      R +  A+ +  C  DV  YSSL+NGLC   +++EAVE  
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL------------NIE 111
            +M  +G     VTY  L+H          +   L   ER   E+            ++ 
Sbjct: 352 REMAMEGCKPNAVTYCSLVHG-------LCSCGRLAEAERMVEEMSSGGGGGHHCPPSVS 404

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I GLC+ GR ++A K   ++  +G  P  V+Y+ ++ GL + G  ++A+ +L ++
Sbjct: 405 TYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464

Query: 172 K 172
           +
Sbjct: 465 R 465



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   +   +++L+NG     R  +   L + M A+ I   +V+YN L+    + +   
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH 62

Query: 93  SAMALLQTL--ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            A  L++ +     +   ++  YS ++ G C+ G+ EE+R+ L ++  +GL P  + Y  
Sbjct: 63  EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++  LCK   + EA +LL +M   GC P   +FNT+I G   +   + A S L+K
Sbjct: 123 VVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +   G  P  VT+N L+NG  K+G   + ++LL  M  +   P+  S+N +++G 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGL 55


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   +NG CKI  ID  +       ++GI     +YS +I+GL    R   A   F
Sbjct: 581 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKF 640

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++ TYN ++   ++ +    A+ L + L     ++NI   + +IDG+ + 
Sbjct: 641 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 700

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R EEA+     +S   LVP VVTY+I+I  L K+G++ EA+ +   M+  GC P+S   
Sbjct: 701 RRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLL 760

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V++  L KNE  RA ++L K
Sbjct: 761 NHVVRELLKKNEIVRAGAYLSK 782



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E+ S I   G+ LD+  +SS+IN LC   R
Sbjct: 468 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 527

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G+  + V Y+ L+ D +   G+   A+ +   +     E N+ VY 
Sbjct: 528 VMDAQNIFDLTVNVGLHPDAVVYSMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYC 586

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ ++G+ P  + Y+I+I+GL + G  + A     +M E 
Sbjct: 587 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTES 646

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   D  ++N V++G L KN     + FL K +
Sbjct: 647 GIAMDICTYNIVLRG-LFKNRCFDEAIFLFKEL 678



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 84/155 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+++I+G      + +A +LF +MV +GI  +LVTYN ++H   + +    A A L
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +   +   N   Y+ +I G    G+W+EA +   ++    ++P VVT ++L+  LCK 
Sbjct: 291 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 350

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+N ++ G+  K
Sbjct: 351 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +F+ + + I        +D A+         G+  DV  Y ++I  LC   ++ +A+E F
Sbjct: 406 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+ QG+  +   YN LI           A  L+  +  +   L+I  +S +I+ LC++
Sbjct: 466 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 525

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A+   D     GL P  V Y++L++G C  G + +A ++   M   G  P+   +
Sbjct: 526 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 585

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T++ G+      D   S  ++
Sbjct: 586 CTLVNGYCKIGRIDEGLSLFRE 607



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K  +++ A       +++GI  D+  Y+S+++ LC    + +A    
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV + +     TYN LI+  +   G++  A+ + + + R     ++   S+++  LC+
Sbjct: 291 RQMVNKRVLPNNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ +EAR   D ++ KG  P V +YNI++NG   KG +++   L   M   G  PD  +
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 183 FNTVIQGFLVKNETDRA 199
           FN +I+ +      D+A
Sbjct: 410 FNVLIKAYANCGMLDKA 426



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      +  I  DV   S L+  LC + ++KEA ++FD M  +G 
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +YN +++    K        L   +  D    +   ++++I      G  ++A  
Sbjct: 369 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 428

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  ++N +IQGF 
Sbjct: 429 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 488

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 489 THGSLLKAKELISEIM 504



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+   ++  N L+    E +    A+ +L  L 
Sbjct: 127 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDIL--LH 184

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV YN +I+G  
Sbjct: 185 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFF 243

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++N+V+         D+A +FL++
Sbjct: 244 KEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 292



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-REIDSAIK------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  K +  +Y I I+G+ +  R + + +K       GI +D+  Y+ ++ GL    
Sbjct: 607 EMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNR 666

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              EA+ LF ++ A  +   ++T N +I   ++ +    A  L  ++ R +   N+  YS
Sbjct: 667 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYS 726

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I  L + G  EEA      +   G  P     N ++  L KK  I+ A   L ++ E+
Sbjct: 727 IMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDER 786


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 7/182 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   +D A+       +KGI + V+ Y+SLING C  +   +A  L ++M
Sbjct: 372 TYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEM 431

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+     +Y+PLI     K    SAM L + + R+    N+  ++ +I G C+ G  
Sbjct: 432 VEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNM 491

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +  D++ +  +VP  VT+N++I G C+ G + +A +L  QM ++G  PD+ ++ ++
Sbjct: 492 DEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSL 551

Query: 187 IQ 188
           I 
Sbjct: 552 IS 553



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           D+    F  +       ++G+ K   ID A +        G+  ++F  ++LI+ LC   
Sbjct: 290 DMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDR 349

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R +EA  LF  M  +G+    VTY  LIH   ++     A+ +   +      + +  Y+
Sbjct: 350 RFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYN 409

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C+   + +AR  L+++ EKGL P   +Y+ LI GLC+KG +  A +L  +M   
Sbjct: 410 SLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARN 469

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   +  +F T+I GF      D A+    K
Sbjct: 470 GVSGNVYTFTTLISGFCKDGNMDEAARLFDK 500



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ + +F  + +VY   I   C+IR +D A         KG+      Y+ L+ GLC  N
Sbjct: 185 EMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNN 244

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EAVE+ + MV +GI A+ VTY  L++     +    A+ +   +    +  ++   S
Sbjct: 245 RVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCS 304

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DGL + G  ++A +    L E G+VP +   N LI+ LCK     EA++L   M  +
Sbjct: 305 FMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANR 364

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++  +I     +   D A
Sbjct: 365 GLEPNEVTYAILIHSLCKRGMMDDA 389



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+ +CK R    A         +G+  +   Y+ LI+ LC    + +A+ +FD+M  +GI
Sbjct: 342 IDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +  YN LI+   +      A  LL  +       +   YS +I GLCR G    A +
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              +++  G+   V T+  LI+G CK G + EA +L  +M +    P+  +FN +I+G+
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGY 520



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 44/234 (18%)

Query: 9   KGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           KG+   Y + + G+C+   +       +S +++GI  D   Y +L+ G C    L+ A+E
Sbjct: 227 KGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALE 286

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR--------------------FSAMALLQTL 101
           + D M++      + + + ++ D   K+G                     F+  AL+  L
Sbjct: 287 MTDDMLSLHFVPSVASCSFMV-DGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKL 345

Query: 102 ERDK----------------YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            +D+                 E N   Y+++I  LC+ G  ++A    D++ EKG+   V
Sbjct: 346 CKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTV 405

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             YN LING C+     +A  LL +M EKG  P + S++ +I G   K +   A
Sbjct: 406 YPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASA 459



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G   +V  Y+ LIN LC    L  A  L ++M+         TYN  + D    
Sbjct: 674 DKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFL-DFLAN 732

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G      +L     +    N   ++ +I G C+ G+ + A   +   +E G  P  ++Y
Sbjct: 733 EGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISY 792

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +IN LCK G I +A +L  +M  KG  PD  ++N +I+   +  E D+ 
Sbjct: 793 STIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKG 843



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  D   ++ +I+       + +A+  +DKM+A G +  +VTY  LI+   +     
Sbjct: 643 EKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLS 702

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA  L + +   ++  N   Y+  +D L   G  E+A K L     +G +   VT+N LI
Sbjct: 703 SAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA-KVLHATILEGCLANTVTFNTLI 761

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            G CK G I  A  L+    E G FPD  S++T+I 
Sbjct: 762 KGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIIN 797



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++      GN + +   I+G CK        R  D  I   +  +   ++ +I G C   
Sbjct: 465 EMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVG 524

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+MV +G+T +  TY  LI       G   A   +  LE +   LN    +
Sbjct: 525 NVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLT 584

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ GR  E     D++  +G+   ++++ +++    K     +   L  +MKEK
Sbjct: 585 TLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEK 644

Query: 175 GCFPDSTSFNTVI 187
           G  PD+  F+T +
Sbjct: 645 GVKPDNV-FHTCM 656



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 71/260 (27%)

Query: 17  IRINGMCKIREI-DSAIKKGICLDVFVYSS------------------------------ 45
           I+I      R++ D  ++    LD +VY++                              
Sbjct: 171 IKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSA 230

Query: 46  -----LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------- 83
                L+ GLC  NR+ EAVE+ + MV +GI A+ VTY  L++                 
Sbjct: 231 VPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDD 290

Query: 84  -----------------DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
                            D   K+G    A  L   L       N+   + +ID LC+  R
Sbjct: 291 MLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRR 350

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           + EA +    ++ +GL P  VTY ILI+ LCK+GM+ +A  +  +M+EKG       +N+
Sbjct: 351 FREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNS 410

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+   +   +A   L +
Sbjct: 411 LINGYCQHDNFHQARGLLNE 430



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 37/222 (16%)

Query: 21  GMCKIRE-IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           G  K +E +D      + L+ F  ++L+ G C   RL E   ++D+M A+G+  +L+++ 
Sbjct: 560 GAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFT 619

Query: 80  PLI------HDNWEKQGRFSAMA-----------------------LLQTLE------RD 104
            ++      HD  +    F  M                        ++Q L        D
Sbjct: 620 VIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIAD 679

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
               N+  Y+++I+ LC+ G    A+   +++     +P   TYN  ++ L  +G + +A
Sbjct: 680 GCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA 739

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             L   + E GC  ++ +FNT+I+GF    +   A   ++ N
Sbjct: 740 KVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNN 780



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 71/145 (48%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R ++A ++    ++ GI  +  T + ++    + +    A  L   + + K+ L+  VY+
Sbjct: 140 RARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYT 199

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I   C +   + AR  L ++  KG+    V YN+L+ GLC+   ++EA ++   M E+
Sbjct: 200 AGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVER 259

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G   D  ++ T++ GF    E + A
Sbjct: 260 GIVADEVTYRTLVYGFCRTEELEMA 284



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI +  +  S ++  L    +   A +LFD+MV      +   Y   I    E + 
Sbjct: 151 SLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRN 210

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  LL  +E    + +   Y++++ GLCR  R  EA +  + + E+G+V   VTY  
Sbjct: 211 LDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRT 270

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L+ G C+   +  A ++   M      P   S + ++ G   +   D+A
Sbjct: 271 LVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKA 319


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +GI I+  CK  ++D A+         G+  D+ VY+SLI G C    L     LFD++
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G +   +TYN LI   + K G+   A  + + +       N+  Y+ +IDGLC VG+
Sbjct: 274 LERGDSPCAITYNTLIR-GFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK 332

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA + L+ + EK   P  VTYNI+IN LCK G++ +A +++  MK++   PD+ ++N 
Sbjct: 333 TKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G   K + D AS  L
Sbjct: 393 LLGGLCAKGDLDEASKLL 410



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---------DVFVYSSLINGLCTF 53
           + ++R + +   Y I + G+C   ++D A K    +         DV  Y++LI+GLC  
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           NRL +A++++D +V +    + VT N L++   +      AM L + +   K   N + Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C+ G    A+  L ++    L P V  YN L++ LCK+G + +A +L  +M+ 
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              FPD  SFN +I G L   +   A S L
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCT 52
           L E +F G   +  VY   I G C   E+D         +++G       Y++LI G C 
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +LKEA E+F+ M+ +G+   + TY  LI           A+  L  +     E N   
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVT 354

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++I+ LC+ G   +A + ++ + ++   P  +TYNIL+ GLC KG + EA KLL  M 
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414

Query: 173 EKGCF--PDSTSFNTVIQGFLVKNETDRA 199
           +   +  PD  S+N +I G   +N   +A
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQA 443



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G   +V+ ++ L+ GLC      +AV L  +M    +  ++ +YN +I    E +  
Sbjct: 134 LKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKEL 193

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L   ++      ++  + ++ID  C+ G+ +EA   L ++   GL   +V Y  L
Sbjct: 194 EKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I G C  G +     L  ++ E+G  P + ++NT+I+GF    +   AS   +
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+++I+G C    L  A  L  KM    +   +  YN L+    ++     A  L + +
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +RD    ++  ++++IDG  + G  + A   L  +S  GL P + TY+ LIN   K G +
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA     +M + G  PD+   ++V++  + + ETD+ +  +KK
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKK 659



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N + Y   I+G+C + +   A       I+K    +   Y+ +IN LC    
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGL 367

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--Y 113
           + +AVE+ + M  +    + +TYN L+     K     A  LL  + +D    + +V  Y
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISY 427

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC+  R  +A    D L EK      VT NIL+N   K G + +A +L  Q+ +
Sbjct: 428 NALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISD 487

Query: 174 KGCFPDSTSFNTVIQGF 190
                +S ++  +I GF
Sbjct: 488 SKIVRNSDTYTAMIDGF 504



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+  G  L  F  S+L+  L      + A   + KM+        V+ + L+    + + 
Sbjct: 64  AVDSGSSL-AFAGSNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRK 122

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  +L  + +  +  N+  +++++ GLCR     +A   L ++    L+P V +YN 
Sbjct: 123 TGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNT 182

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +I G C+   + +A +L  +MK  GC     ++  +I  F    + D A  FLK+
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKE 237


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 97/158 (61%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            ++ +I  LC    L++A++L +KM   G TA +VTYN +I+   E++    AM LL  +
Sbjct: 309 TFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKM 368

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +    + +I  Y+ ++ GLC   +W +A + +D +++ G +P  VT+N LI  LC+KG++
Sbjct: 369 KSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLM 428

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++A ++  QM +KGC P+S +++T+I G     + D+A
Sbjct: 429 VDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQA 466



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N + Y   I+ +C   ++R+    +D  + +G   DV  Y+ L+   C     ++A+
Sbjct: 163 VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 222

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL D M A+G T   VTYN L+     +     A+ LL+ L     + +   Y+ V+ GL
Sbjct: 223 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 282

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   RW +A + + ++  +   P   T+N++I  LC+KG++ +A +LL +M + GC  + 
Sbjct: 283 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANI 342

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I G   +   D A   L K
Sbjct: 343 VTYNAIINGLCEQRNVDGAMGLLSK 367



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            YG   +G C+   +  A +      +  + + Y+ LI+ LC   ++++A+ + D M+ +
Sbjct: 137 AYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR 196

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++VTYN L+    + +G   AM L+  +  +    N   Y++++DG+C  G  ++A
Sbjct: 197 GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA 256

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  L   G  P  V YN ++ GLC      +AD+L+ +M  + C P+  +FN VI  
Sbjct: 257 LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYS 316

Query: 190 FLVKNETDRASSFLKK 205
              K    +A   L+K
Sbjct: 317 LCRKGLLQQAIQLLEK 332



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 8/190 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ++GMC   ++D A++        G       Y++++ GLC+  R  +A EL 
Sbjct: 236 NNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELV 295

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +       T+N +I+    K     A+ LL+ + +     NI  Y+ +I+GLC  
Sbjct: 296 TEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 355

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A   L ++   G  P +VTYN L+ GLC     ++A++L+  M + GC PD+ +F
Sbjct: 356 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTF 415

Query: 184 NTVIQGFLVK 193
           NT+I GFL +
Sbjct: 416 NTLI-GFLCQ 424



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I +   CK R    A++       +G   +   Y+ L++G+C    + +A+EL   +
Sbjct: 204 TYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNL 263

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + G     V YN ++      +    A  L+  + R+    N   +++VI  LCR G  
Sbjct: 264 PSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLL 323

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + L+++S+ G    +VTYN +INGLC++  +  A  LL +MK  GC PD  ++NT+
Sbjct: 324 QQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 383

Query: 187 IQGF 190
           ++G 
Sbjct: 384 LKGL 387



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 41/244 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +++     N   Y   ING+C+ R +D A+         G   D+  Y++L+ GLC+  +
Sbjct: 333 MSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQ 392

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A EL D M   G   + VT+N LI    +K     A+ + + +       N   YS 
Sbjct: 393 WVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYST 452

Query: 116 VIDGLCRVGRW----------------------------------EEARKKLDQLSEKGL 141
           +I GL +  +                                   EEA + + +L + G+
Sbjct: 453 IISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGI 512

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P  V YN ++ GLC+ G    A  ++  M   GC PD  ++  +I+G   +   + A  
Sbjct: 513 SPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARE 572

Query: 202 FLKK 205
            L K
Sbjct: 573 LLIK 576



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +   YS++I+GL    +L +A+ELF++M  +G   + + Y  L     +      
Sbjct: 441 KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEE 499

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+  ++ L+      +  +Y+ ++ GLCR G+ E A   +  +   G +P  +TY ILI 
Sbjct: 500 AIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIE 559

Query: 154 GLCKKGMIMEADKLLVQM 171
           GL  +G + EA +LL+++
Sbjct: 560 GLAYEGYLNEARELLIKL 577



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y  + DG CR GR  +AR+ +  +  +   P   TYN LI+ LC++G + +A  +L 
Sbjct: 135 VVAYGALTDGYCRAGRLGDARRVVGGMPVQ---PNAYTYNPLIHTLCERGQVRDALSVLD 191

Query: 170 QMKEKGCFPDSTSFNTVIQG 189
            M  +GC PD  ++N +++ 
Sbjct: 192 DMLCRGCAPDVVTYNILLEA 211


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G+CK   +  A       +  G+  D   Y+ LI+  C   RL+EA ++FD M
Sbjct: 514 TYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGM 573

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+    VTY   IH    +   +SA    Q +  +    N   Y+++I  LCR+GR 
Sbjct: 574 LVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRT 633

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +   ++ E+GL P   TY +LI+G CK+G   EA +L  +M + G  PD  + N +
Sbjct: 634 NLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNAL 693

Query: 187 IQGF 190
            +GF
Sbjct: 694 FKGF 697



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ  + +   Y I +NG  K+R +       D  + KG+  D F Y++ I+      
Sbjct: 432 EMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILG 491

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
              EA +L + M+++GI+++ VTYN +  D   K G    A  L   +  D  + +   Y
Sbjct: 492 STSEAFQLTEVMISRGISSDTVTYN-IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITY 550

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  GR  EAR   D +   GL P  VTY + I+  C++G +  A     +M E
Sbjct: 551 TCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLE 610

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  P+  ++N +I        T+ A
Sbjct: 611 EGVRPNEVTYNVLIHALCRMGRTNLA 636



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 25  IREIDSAIKKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           +RE+++  + G CL   V Y+ +INGL     L++A +L D+M      A   T+NPLI 
Sbjct: 254 LREMEA--RPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLIT 310

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
             + +     A AL   +E +     +  Y+ +I G+ R G  E AR K  ++   GL+P
Sbjct: 311 GYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLP 370

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            ++TYN LING CK G + EA  L   +K  G  P   ++N ++ G+    + + A  F
Sbjct: 371 DLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRF 429



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   V  Y+++I+G+     ++ A   F +M A G+  +L+TYN LI+   +      
Sbjct: 331 EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKE 390

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   L+R     ++  Y++++DG CR+G  EEAR+   ++ E+G  P V TY IL+N
Sbjct: 391 ALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMN 450

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  K   +    +   +M  KG  PD  ++NT I   L+   T  A
Sbjct: 451 GSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEA 496



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL       +   Y I ++G C++ +++ A       +++G   DV  Y+ L+NG     
Sbjct: 397 DLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVR 456

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L    E FD+M+++G+  +   YN  I           A  L + +       +   Y+
Sbjct: 457 NLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYN 516

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + +DGLC+ G  ++A     ++   GL P  +TY  LI+  C++G + EA  +   M   
Sbjct: 517 IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS 576

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + ++   I  +  +     A  + +K
Sbjct: 577 GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQK 607



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 21/190 (11%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CK   +  A+       + G+   V  Y+ L++G C    L+EA     +M
Sbjct: 374 TYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEM 433

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-------LLQTLERDKYELNIEVYSLVIDG 119
           V QG   ++ TY  L+  N  ++ R  AM        L + L+ D +  N  + + +I  
Sbjct: 434 VEQGCQPDVSTYTILM--NGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELI-- 489

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
              +G   EA +  + +  +G+    VTYNI ++GLCK G + +A  L ++M   G  PD
Sbjct: 490 ---LGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPD 546

Query: 180 STSFNTVIQG 189
             ++  +I  
Sbjct: 547 CITYTCLIHA 556



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 38/173 (21%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE-RDKYELNIEV 112
           R  +   ++ +M+  GI   +VTYN L+ D++ ++GR   A  LL+ +E R    L  +V
Sbjct: 211 RWDDMRSVYAEMLQLGIEPSIVTYNTLL-DSFFREGRVDQAAKLLREMEARPGGCLPSDV 269

Query: 113 -YSLVIDGLCRVGRWEEARKKLD----------------------------------QLS 137
            Y++VI+GL R G  E+A + +D                                  ++ 
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEME 329

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +G+VP VVTYN +I+G+ + G +  A    V+M+  G  PD  ++N++I G+
Sbjct: 330 NEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGY 382



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +LV+  L    RW++ R    ++ + G+ P +VTYN L++   ++G + +A KLL +M+ 
Sbjct: 200 NLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEA 259

Query: 174 K--GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  GC P   ++N VI G   K E ++A+  + +
Sbjct: 260 RPGGCLPSDVTYNVVINGLARKGELEKAAQLVDR 293



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   Y + I+ +C++   + A       +++G+  + + Y+ LI+G C    
Sbjct: 608 MLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGN 667

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            +EA+ L+ +M   GI  +  T+N L     E Q + +
Sbjct: 668 WEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHA 705


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+ F+ +   Y   ++G+ KI+E+D A+K       +G C DV  Y+ LI GLC   
Sbjct: 454 DMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQ 513

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  L  +M  +G+    VTYN LI    +      AM  L  +   + E N+  YS
Sbjct: 514 RIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYS 573

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR ++A    +++  KG  P  + Y   I+GL   G   EA   L +M+E+
Sbjct: 574 TLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEER 633

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+  +  ++  FLV +    A   L++
Sbjct: 634 EMKPDTYVYVGLLNAFLVDSNQPLAFEILQE 664



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING+ K  ++D A+       + G   D+ +Y++LI+GLCT NRL+E+  L 
Sbjct: 323 NSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLL 382

Query: 64  DKMVAQGITAELVTYNPLI-----------------------HDNWEKQG---------- 90
            +M   GI     T N +                        H  W K            
Sbjct: 383 QEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKH 442

Query: 91  --RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A   L  +  + ++ +I  YS  +DGL ++   ++A K    +  +G  P V+ Y
Sbjct: 443 GKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAY 502

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NILI GLCK   I EA  LL +M+EKG  P + ++NT+I G    +  + A  FL
Sbjct: 503 NILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFL 557



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           +SL+  LC   +  EA +    M  +G   ++V Y+  +    + Q    A+ L Q +  
Sbjct: 433 TSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICA 492

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             Y  ++  Y+++I GLC+  R  EA+  L ++ EKGLVP  VTYN LI+GLCK   + E
Sbjct: 493 QGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEE 552

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           A   L  M EK   P+  +++T+I G       D A
Sbjct: 553 AMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDA 588



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 35/226 (15%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICL-----------DVFVYSSLINGLCTFNRL 56
           F  +  +Y + I G+C    ++  +KK +CL           DV + + LI+   +F++ 
Sbjct: 201 FTPDISLYDVIIGGLC----VNKDVKKALCLYSEMKGFKIQPDVKIVTKLIS---SFSKE 253

Query: 57  KEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLE------------- 102
           +E    F++M       A  + YN +++   +      A  LLQ +              
Sbjct: 254 EELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKL 313

Query: 103 ---RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
              +     N   +S+VI+GL + G  + A      ++  G  P ++ YN LI+GLC   
Sbjct: 314 FRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSN 373

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + E+  LL +M+E G  P S + N +      +++   A   LKK
Sbjct: 374 RLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKK 419



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFS 93
           G   D +  + ++   C      +A+++F+++  +G   E V +   L    W K  +  
Sbjct: 96  GWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDK-- 153

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L++T+E     LN + +  +I G  +  R ++A    D++ + G  P +  Y+++I 
Sbjct: 154 ACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIG 213

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLC    + +A  L  +MK     PD      +I  F
Sbjct: 214 GLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSF 250



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 28/207 (13%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           +++  C++  I++  +K + L+   + SLI G    +R+ +A+ LFDKM   G T ++  
Sbjct: 150 KVDKACEL--IETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISL 207

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKL 133
           Y+ +I      +    A+ L   ++  K + ++++ + +I    +       +EE  + +
Sbjct: 208 YDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDM 267

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF---------------- 177
           D  +        + YN ++N L   G + +A  LL  +    C                 
Sbjct: 268 DPKA------STLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVP 321

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           P+ST+F+ VI G +   + D A    +
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFR 348



 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 47/88 (53%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           V+S+++    + G+ ++A + ++ + EK +     T+  LI G  K+  + +A  L  +M
Sbjct: 137 VFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKM 196

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K+ G  PD + ++ +I G  V  +  +A
Sbjct: 197 KKSGFTPDISLYDVIIGGLCVNKDVKKA 224



 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           DKY L     + V+   C +  +++A    +++ ++G V   V ++IL+    K G + +
Sbjct: 100 DKYTL-----TPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYV-FSILVLAFSKWGKVDK 153

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A +L+  M+EK    +  +F ++I GF+ ++  D+A     K
Sbjct: 154 ACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDK 195


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 44/241 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E         +G+ ING CK     +A++       +GI   V  Y+SLI+GLC+  
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 55  RLKEAVELF-----------------------------------DKMVAQGITAELVTYN 79
           +++E V+L                                    D M  + +  ++V Y 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYT 373

Query: 80  PLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D + + G+   AMA+ + + +     N+  Y+ +I G  R G W  A   LD++ E
Sbjct: 374 ILI-DGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG+   VVTYN+LI  LC KG + +A KLL +M E G  P+  ++NT+IQGF  K     
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 199 A 199
           A
Sbjct: 493 A 493



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 2   DLTEQRFKG--------NFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSL 46
           DL E+ F+         + + +   I+G+C+I ++  A      IK  G+   V  Y+SL
Sbjct: 173 DLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSL 232

Query: 47  INGLCT---FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           I+G C       +     L  +MV  GI+   VT+  LI+   +     +A+ + + +++
Sbjct: 233 IDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ 292

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                ++  Y+ +I GLC  G+ EE  K ++++ + GL P  +T+  ++ G CKKGM+ +
Sbjct: 293 QGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A+  +  M E+   PD   +  +I G+
Sbjct: 353 ANDWIDGMTERNVEPDVVIYTILIDGY 379



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID   ++ +  DV +Y+ LI+G     ++++A+ + + M  +GI+  + TYN LI   + 
Sbjct: 357 IDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI-TGFS 415

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + G + SA  LL  ++    E ++  Y+++I  LC  G   +A K LD++SE GL P  +
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN +I G C KG I  A ++  +M++     +  ++N  I+ F    + D A+  L +
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNE 534



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 13/204 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +TE+  + +  +Y I I+G  ++ +++ A+       KKGI  +V  Y+ LI G      
Sbjct: 360 MTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A  L D+M  +GI A++VTYN LI     K     A+ LL  +     E N   Y+ 
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 116 VIDGLCRVGRWEEA---RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +I G C  G  + A   R ++++  ++     VVTYN+ I   C+ G + EA+ LL +M 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRA---NVVTYNVFIKYFCQIGKMDEANDLLNEML 536

Query: 173 EKGCFPDSTSFNTVIQGFLVKNET 196
           +K   P+  ++ T+ +G + K  T
Sbjct: 537 DKCLVPNGITYETIKEGMMEKGYT 560


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ++G CK++ +  A +       KG+  DV+ Y++++ GLC   ++ EAV L 
Sbjct: 280 NRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLR 339

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           DKM +  +  ++VTYN LI   +E +G  +A  L++ ++    + N   ++++I   C  
Sbjct: 340 DKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTE 399

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA   + ++ E G  P   TYN +ING CK G + EA K++ +M  KG   D+ + 
Sbjct: 400 GKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTL 459

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT++    ++ + D A +   K
Sbjct: 460 NTLLHTMCLEKQLDDAYTLTMK 481



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + I I   C   +ID A       ++ G   D F Y+++ING C   ++ EA +
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + D+M  +G+  +  T N L+H    ++    A  L     +  Y L+   Y  +I G  
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  + + A K  +++ E G+V  ++TYN +I GLC  G   +A   L ++ EKG  PD +
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDES 562

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           + N +I G+  +   ++A  F  K
Sbjct: 563 TSNIIIHGYCWEGAVEKAFQFHNK 586



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   Y   ING CK  ++  A K       KG+ LD F  ++L++ +C   +
Sbjct: 412 MVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQ 471

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  L  K   +G   + VTY  LI   ++ +    A+ L + ++       I  Y+ 
Sbjct: 472 LDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNT 531

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC  G+ ++A  KL++L EKGLVP   T NI+I+G C +G + +A +   +M E  
Sbjct: 532 IIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHS 591

Query: 176 CFPDSTSFNTVIQGF 190
             PD  + N +++G 
Sbjct: 592 LKPDIFTCNILLRGL 606



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 7   RFKGNFHVYGIRINGMCKI---------REI-DSAIKKGICLDVFVYSSLINGLCTFNRL 56
           RF+ N       +N + +          RE+   A+K G+  +V  ++ LI+G C+ N  
Sbjct: 168 RFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNT 227

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +EA+ L ++M   G   + VTYN ++    ++        LL  ++      N   Y+++
Sbjct: 228 EEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNIL 287

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + G C++   +EA + ++ ++ KG++P V TYN ++ GLC +G I EA +L  +M+    
Sbjct: 288 VHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKL 347

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            PD  ++NT+I G      +D A
Sbjct: 348 VPDVVTYNTLIDGCFEHRGSDAA 370



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 17/198 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I G  K  + D A+K        GI   +  Y+++I GLC   +  +AV+  +++
Sbjct: 493 TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 67  VAQGITAELVTYNPLIHDN-WE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +G+  +  T N +IH   WE    K  +F    +  +L+ D +  NI     ++ GLC
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNI-----LLRGLC 607

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G  E+     +    KG     VTYNI+I+  CK+  + +A  L+ +M+ K   PD  
Sbjct: 608 REGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRY 667

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++N ++ G      T+ A
Sbjct: 668 TYNAIVTGLTKAGRTEEA 685



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N + + I I+G C        +R I+   + G C D   Y++++  LC  ++L +  +
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M   G+     TYN L+H   + +    A  +++ +       ++  Y+ ++ GLC
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC 327

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA +  D++    LVP VVTYN LI+G  +      A KL+ +MK +G   +  
Sbjct: 328 DEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGV 387

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           + N +I+ F  + + D AS+ + K
Sbjct: 388 THNIMIKWFCTEGKIDEASNVMVK 411



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 61  ELFDKMVAQGITAELVT----YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           ++F+KM        L+T     N L+  N      FS   + Q   +   + N+  ++++
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSR-EVFQDAVKLGVQPNVNTFNIL 217

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I G C     EEA + ++Q+ E G  P  VTYN ++  LCK+  + +   LL+QMK  G 
Sbjct: 218 IHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGL 277

Query: 177 FPDSTSFNTVIQGF 190
           FP+  ++N ++ G+
Sbjct: 278 FPNRNTYNILVHGY 291



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 18/205 (8%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+G C    ++ A       ++  +  D+F  + L+ GLC    L++ + LF+  +++
Sbjct: 566 IIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISK 625

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   + VTYN +I    +++    A  L+  +E    E +   Y+ ++ GL + GR EEA
Sbjct: 626 GKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEA 685

Query: 130 RKKLDQLSEKG-------LVPGVVTYNIL----INGLCKKGMIMEADKLLVQMKEKGCFP 178
            K   + +EKG         P + T +++    I+ LC +G   +A KL  Q ++KG   
Sbjct: 686 EKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSL 745

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           +  ++  ++ G L + ++   +S L
Sbjct: 746 NKYTYIKLMDGLLKRRKSFTTTSLL 770



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVPGVVTYNILIN 153
           +   ++R ++  N+   + +++ L R         +R+      + G+ P V T+NILI+
Sbjct: 160 IFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIH 219

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G C      EA +L+ QM E GC PD+ ++NTV+     +++  +    L
Sbjct: 220 GYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLL 269


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           GI  DV ++S++IN  C  +R  +A+ LF KM   G+   +VTYN +IH    K GR   
Sbjct: 251 GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIH-GLCKSGRLDE 309

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A    + + ++K   ++  YS+ I+GL ++ + +EA   L ++SE G VP  V YN LI+
Sbjct: 310 AYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLID 369

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G CK G I EA K+   M  KG  P+S + N++IQGF   ++  +A + L++
Sbjct: 370 GYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEE 421



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L  ++ + N  VY   I   C    +++A +       +G+ L    YSSL++GLC   
Sbjct: 631 ELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIG 690

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVY 113
            + +A  L D+M  +G+   +V Y  +I   + K G+ + + + LQ +       N   Y
Sbjct: 691 LVDDAKHLLDEMRKEGLLPNVVCYTTII-GGYSKLGQMNKVNIVLQEMSSHNIHPNKFTY 749

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG C++G+ +EA K L++++EKG++P  VTYN   NGLCK+G + EA K+  +M  
Sbjct: 750 TIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSS 809

Query: 174 KGCFPDSTSFNTVIQG 189
                D  ++ T+I G
Sbjct: 810 GAVCLDEITYTTLIDG 825



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H++   IN  CK    D AI       K G+  +V  Y+++I+GLC   RL EA    
Sbjct: 255 DVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFK 314

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KMV + ++  L+TY+  I+   + +    A  +L+ +    +  N  VY+ +IDG C++
Sbjct: 315 EKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKM 374

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA K  D +  KG+ P  VT N LI G CK   I +A+ +L +M  +G   +  SF
Sbjct: 375 GNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSF 434

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           + VI    +K     A  F+++
Sbjct: 435 SMVINWLCLKFRFVTALHFIRE 456



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + YG+ I+G CK  +++         + K + L+  VY+SLI   C    +  A  L 
Sbjct: 605 NVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLR 664

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M ++G+     TY+ L+H          A  LL  + ++    N+  Y+ +I G  ++
Sbjct: 665 DDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKL 724

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +    L ++S   + P   TY I+I+G CK G   EA KLL +M EKG  PD+ ++
Sbjct: 725 GQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTY 784

Query: 184 NTVIQGFLVKNETDRA 199
           N    G   + + + A
Sbjct: 785 NAFTNGLCKEGKVEEA 800



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 11/197 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +++E  F  N  VY   I+G CK+  I  A+K       KGI  +    +SLI G C  +
Sbjct: 351 EMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSD 410

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEV 112
           ++ +A  + ++M+ +G+     +++ +I  NW   + RF +A+  ++ +       N  +
Sbjct: 411 QIGQAENVLEEMIGRGLPINQGSFSMVI--NWLCLKFRFVTALHFIREMLLRNLRPNDGL 468

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            + ++ GLC+ G+  EA +   +L  KG VP +VT N LI+GLCK G + E  KLL  M 
Sbjct: 469 LTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML 528

Query: 173 EKGCFPDSTSFNTVIQG 189
           E+G   D  ++NT+I G
Sbjct: 529 ERGLVFDRITYNTLISG 545



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK   +   +K       +G+  D   Y++LI+G C   ++KE  EL ++MV +GI
Sbjct: 508 IHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGI 567

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ T+N L+H          A  L    +++ Y  N+  Y ++IDG C+  + EE   
Sbjct: 568 QPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGEN 627

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L++L  K L    V YN LI   C  G +  A +L   MK +G      ++++++ G  
Sbjct: 628 LLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLC 687

Query: 192 VKNETDRASSFL 203
                D A   L
Sbjct: 688 NIGLVDDAKHLL 699



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KKG+   +   + L++ L   N LK++ E++D +   GI  ++  ++ +I+   +     
Sbjct: 214 KKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHRED 273

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   +E+     N+  Y+ +I GLC+ GR +EA +  +++ ++ + P ++TY++ I
Sbjct: 274 DAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFI 333

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           NGL K   I EA+ +L +M E G  P+   +NT+I G+
Sbjct: 334 NGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGY 371



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/97 (21%), Positives = 47/97 (48%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +++  + ++  L +    +++ +  D +   G++P V  ++ +IN  CK     +A  L 
Sbjct: 220 SLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLF 279

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +M++ G  P+  ++N +I G       D A  F +K
Sbjct: 280 SKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEK 316


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 96/174 (55%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I K    D F ++ L+ GLC  N+L++A +L  +M   G   +   YN LI    + +  
Sbjct: 2   IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDF 61

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A   L  + ++     +  Y+ ++DGLC+ GR ++A K LD++ +KG  P + TYN++
Sbjct: 62  GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVI 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + GLC++  + EA K+L +M  +G FPD  ++N+ I+G    +  D A  FL +
Sbjct: 122 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 175



 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNR 55
           L E   +G F     Y   I G+CK   +D A K      +  DV  Y+++INGLC    
Sbjct: 138 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGD 197

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L  A  + D+M  +G T ++VTY+ LI D + K G    AM LL ++ +     N+  Y+
Sbjct: 198 LDSASRMLDQMTNRGCTPDVVTYSSLI-DGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 256

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++  L R+G   +A   L ++  +G  P VV+YN  I+GLCK   + +A  +  +M E+
Sbjct: 257 SLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 316

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+++S++ +++    K E D A + +++
Sbjct: 317 GCTPNASSYSMLVEELCKKKELDDAITLVEQ 347



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 13/213 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   N + Y + + G+C+ R++D A K       +G   DV  Y+S I GLC 
Sbjct: 103 LDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 162

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            +R+ EA +   +M    +T ++V+Y  +I+   +     SA  +L  +       ++  
Sbjct: 163 CDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVT 219

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +IDG C+ G  E A   LD + + G  P +V YN L+  L + G I +A+ +LV+M+
Sbjct: 220 YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 279

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +G  PD  S+N  I G        +A +   +
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDR 312



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK  ++DSA +       +G   DV  YSSLI+G C    ++ A+ L D M+
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G    +V YN L+           A  +L  +ER  +  ++  Y+  IDGLC+  R +
Sbjct: 245 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVK 304

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A+   D++ E+G  P   +Y++L+  LCKK  + +A  L+ Q +EK    D   +  ++
Sbjct: 305 KAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLL 364

Query: 188 QGFLVKNETDRASSFLKK 205
            G       D A +   K
Sbjct: 365 DGLCKGGRFDEACALFSK 382



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 12/211 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNR 55
           + ++  + +   + I + G+C+  +++ A      +K+  C+ D  +Y++LI+G      
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
             +A +   +MV       +VTY  ++ D   K GR   A+ LL  +       NI  Y+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIV-DGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GLC   + +EA+K L++++ +G  P VVTYN  I GLCK   + EA K L +M   
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT 179

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  S+ TVI G     + D AS  L +
Sbjct: 180 ---PDVVSYTTVINGLCKSGDLDSASRMLDQ 207



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 103/173 (59%), Gaps = 4/173 (2%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   DV  Y++ I+GLC   R+K+A  +FD+MV +G T    +Y+ L+ +  +K+   
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELD 339

Query: 93  SAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQ-LSEKGLVPGVVTYNI 150
            A+ L++   R+KY++ +I +Y++++DGLC+ GR++EA     + L EK   P V  YN+
Sbjct: 340 DAITLVEQ-AREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNV 398

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +++  CK+  I +A ++  QM E+ C  +  ++N ++ G  V +    A + L
Sbjct: 399 MLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDAETML 450



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD + E+    N   Y + +  +CK +E+D AI       +K   +D+ +Y+ L++GLC 
Sbjct: 310 FDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCK 369

Query: 53  FNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNI 110
             R  EA  LF K++ + I   ++  YN ++  + +++    A+ +  Q LER+    N+
Sbjct: 370 GGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC--CNV 427

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +++++ GLC   R  +A   L  + ++G +P  VTY  L++ +CK G    A +L  +
Sbjct: 428 VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEE 487

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + GC PD  +++ +I G + +N  + A     K
Sbjct: 488 AVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 522


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 111/211 (52%), Gaps = 12/211 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+ +      +   I G+C+ R +  A       I +    ++  YS +I+GLC  ++
Sbjct: 143 MTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQ 202

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           L EA +L D+MV++G   +LV Y PL+   +   GR  SA+ LL+ +       ++  Y+
Sbjct: 203 LDEAQQLLDRMVSEGCRPDLVAYTPLVL-GFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 261

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VID LC+VGR ++A +   +L      P VVTY+ LI G C+   + E  K+   M+E 
Sbjct: 262 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 318

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P+  ++NT+I G  + +  + A    ++
Sbjct: 319 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFRE 349



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 8/199 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   ING+CK+  +D+A       +  G C  + F Y++L++GLC  +RL  A  +  + 
Sbjct: 49  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEA 108

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +    ++VTYN L+   ++      A+A    +  + Y   +  ++ +I GLCR  R 
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 168

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +  +++ ++   P +VTY+++I+GLCK   + EA +LL +M  +GC PD  ++  +
Sbjct: 169 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 228

Query: 187 IQGFLVKNETDRASSFLKK 205
           + GF      D A   L++
Sbjct: 229 VLGFSAAGRLDSALGLLRR 247



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRF-SAMA 96
           DV  Y++LINGLC   R+  A +LF KMVA G       TYN L+ D   KQ R  +A A
Sbjct: 45  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV-DGLCKQDRLDAARA 103

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           ++    +  +  ++  Y+ ++  L ++GR +EA     Q++E+G VP +V++N +I GLC
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   + +A ++  +M ++   P+  +++ VI G    ++ D A   L +
Sbjct: 164 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 212



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++G+CK   +D+A        K+    DV  Y++L+  L    R+ EA+ 
Sbjct: 79  RPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 138

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            F +M  +G    LV++N +I      +    A+ +   +    +  N+  YS+VIDGLC
Sbjct: 139 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 198

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  + +EA++ LD++  +G  P +V Y  L+ G    G +  A  LL +M  +GC PD  
Sbjct: 199 KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVV 258

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  VI         D A    ++
Sbjct: 259 TYTVVIDKLCKVGRVDDAHEIFRE 282



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y + I+G+CK  ++D A       + +G   D+  Y+ L+ G     
Sbjct: 177 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 236

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL  A+ L  +MV+QG   ++VTY  +I D   K GR   A  + + L  +K   N+  Y
Sbjct: 237 RLDSALGLLRRMVSQGCIPDVVTYTVVI-DKLCKVGRVDDAHEIFRELVANKCSPNVVTY 295

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I G CR  R +E  K + +++ +   P VVTYN +I GL       EA  +  +M E
Sbjct: 296 SALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSE 352

Query: 174 KGCFPDSTSF 183
            G  PD+ ++
Sbjct: 353 CGFVPDARTY 362



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QT 100
           S ++ GLC   R+ +A+E FD  +       ++V+Y  LI +   K GR  A   L  + 
Sbjct: 14  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLI-NGLCKLGRVDAAFDLFRKM 72

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       N   Y+ ++DGLC+  R + AR  + +  ++   P VVTYN L+  L + G 
Sbjct: 73  VAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGR 132

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + EA     QM E+G  P   SFN +I G 
Sbjct: 133 VDEALATFTQMTEEGYVPTLVSFNAIITGL 162



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEAD 165
           + N    S+++ GLCR GR  +A +  D   E     P VV+Y  LINGLCK G +  A 
Sbjct: 7   QCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAF 66

Query: 166 KLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L  +M    GC P++ ++N ++ G   ++  D A + + +
Sbjct: 67  DLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAE 107


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 7/203 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C +  ++ A++       KG   D   Y +++  LC   R++E +++ 
Sbjct: 187 NVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVI 246

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM    + A+ VTYN LIH   + Q    A+  L+  ++  ++++   YS ++D  C+ 
Sbjct: 247 EKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKE 306

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR ++A++ ++++  +G +P VVTY  +ING  + G + +A K+L QM + GC P++ S+
Sbjct: 307 GRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSY 366

Query: 184 NTVIQGFLVKNETDRASSFLKKN 206
              ++G   K  +  A   +K +
Sbjct: 367 TAFLKGLCQKGNSSEAREMMKAS 389



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK +  D A+       K+G  +D   YS++++  C   R+ +A E+ ++M
Sbjct: 260 TYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEM 319

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G   ++VTY  +I+   +      A  +LQ + +   + N   Y+  + GLC+ G  
Sbjct: 320 FTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNS 379

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EAR+ +    E+   P  +TY+++++G  ++G + +A  ++ +M  KG FP     N +
Sbjct: 380 SEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLL 439

Query: 187 IQGFLVKNETDRASSFLKK 205
           +Q        D A  F+++
Sbjct: 440 LQSLCRIGRVDEAKKFMEE 458



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++  CK   +D A         +G   DV  Y+++ING      + +A ++  +M 
Sbjct: 296 YSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMY 355

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G     V+Y   +    +K     A  +++  E   +  N   YS+V+ G  R G+  
Sbjct: 356 KHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLS 415

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   + ++  KG  P  V  N+L+  LC+ G + EA K + +    GC  ++ +F TVI
Sbjct: 416 DACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVI 475

Query: 188 QGFLVKNETDRASSFL 203
             F  +++ + A S L
Sbjct: 476 HRFCQQDDIEAALSLL 491



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  +V  Y+ LI G C  +R+++A+EL  +M  +G + + V+Y  ++    + +     
Sbjct: 183 GIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREV 242

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M +++ +E  K   +   Y+ +I  LC+    +EA + L +  ++G     V Y+ +++ 
Sbjct: 243 MDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDS 302

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            CK+G + +A +++ +M  +GC PD  ++  +I GF    E  +A   L++
Sbjct: 303 YCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQ 353



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 85  NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++ + G+  +AM +L  +++   E N+ V +  I  L      E+A + L+++   G++P
Sbjct: 127 SYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMP 186

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            VVTYN LI G C    + +A +L+ +M  KGC PD  S+ TV+ GFL KN   R
Sbjct: 187 NVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVM-GFLCKNRRIR 240



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           EQ +  N   Y + ++G  +  ++  A       I KG        + L+  LC   R+ 
Sbjct: 391 EQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVD 450

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA +  ++ +  G     V +  +IH   ++    +A++LL  +       +   Y+ +I
Sbjct: 451 EAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTII 510

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGC 176
           D L + GR EEA +   ++ +KG+ P  VTY  +I+   + G + +   LL +M   + C
Sbjct: 511 DALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQEC 570

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               T+FN VI+        + A   L K
Sbjct: 571 ---RTAFNQVIEKLCTFGNLEAADKLLGK 596



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+++I+ L    R++EA EL  KM+ +GI    VTY  +IH  + + GR   +  L
Sbjct: 502 DAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIH-RYGQIGRVEDLLNL 560

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                 + E     ++ VI+ LC  G  E A K L ++          T ++L+    +K
Sbjct: 561 LDKMLTRQECRT-AFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYLRK 619

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G+ + A K+  +M  +   PD      V +  + + +++ A +  
Sbjct: 620 GIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLF 664


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 2/167 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALL 98
           V+ ++ +IN LC   +LK+A +    M   G+   +VTYN ++H  +   GR  A  A+L
Sbjct: 221 VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVH-GYCSSGRVEAADAIL 279

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            T++R K E +   Y  +I G+C+ GR EEA K  +++ +KGL P  V YN LI+G C K
Sbjct: 280 TTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A     +M +KG  P  +++N++I    ++  TD A   +K+
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING C+           D  +  GI      Y+SL++ L   NR+KEA +LF K+
Sbjct: 398 TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+  + + +N LI  +        A  LL+ ++R K   +   ++ ++ G CR G+ 
Sbjct: 458 TSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR+  D++  +G+ P  +++N LI+G  ++G I +A ++  +M + G  P   ++N +
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 187 IQGFLVKNETDRASSFLKK 205
           +QG     E D A   LK+
Sbjct: 578 VQGLCKNQEGDLAEELLKE 596



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q+ + +   YG  I+GMCK   ++ A       ++KG+     +Y++LI+G C    
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A    D+M+ +GI+  + TYN LIH  + +Q    A  +++ ++      +   Y++
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G CR    ++A    D++   G+ P   TY  L++ L KK  + EAD L  ++  +G
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             PD+  FN +I G    +    A   LK
Sbjct: 462 VLPDAIMFNALIDGHCSNSNVKGAFELLK 490



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   ++G C    +++A        ++ I  D F Y SLI+G+C   RL+EA +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F++MV +G+    V YN LI D +  +G    A A    + +      +  Y+ +I  L
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLI-DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
               R +EA   + ++ EKG+ P  +TYNILING C+     +A  L  +M   G  P  
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++ +++     KN    A    KK
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKK 456



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 9/192 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R K + + + I IN +CK  ++  A          G+  ++  Y+++++G C+  R++ A
Sbjct: 216 RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             +   M  Q I  +  TY  LI     KQGR   A  + + + +     +  +Y+ +ID
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLI-SGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G  + A    D++ +KG+ P + TYN LI+ L  +    EA+ ++ +++EKG  P
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 179 DSTSFNTVIQGF 190
           D+ ++N +I G+
Sbjct: 395 DAITYNILINGY 406



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V+  LI   C  NR  EA E F  M  +G+   + T N L+    +     +A  L   +
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R + + ++  ++++I+ LC+ G+ ++A+  +  +   G+ P +VTYN +++G C  G +
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             AD +L  MK +   PDS ++ ++I G   +   + AS   ++
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 111/211 (52%), Gaps = 12/211 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +TE+ +      +   I G+C+ R +  A       I +    ++  YS +I+GLC  ++
Sbjct: 193 MTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQ 252

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           L EA +L D+MV++G   +LV Y PL+   +   GR  SA+ LL+ +       ++  Y+
Sbjct: 253 LDEAQQLLDRMVSEGCRPDLVAYTPLVL-GFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 311

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VID LC+VGR ++A +   +L      P VVTY+ LI G C+   + E  K+   M+E 
Sbjct: 312 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 368

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P+  ++NT+I G  + +  + A    ++
Sbjct: 369 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFRE 399



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++G+CK   +D+A        K+    DV  Y++L+  L    R+ EA+ 
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 188

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            F +M  +G    LV++N +I      +    A+ +   +    +  N+  YS+VIDGLC
Sbjct: 189 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 248

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  + +EA++ LD++  +G  P +V Y  L+ G    G +  A  LL +M  +GC PD  
Sbjct: 249 KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVV 308

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  VI         D A    ++
Sbjct: 309 TYTVVIDKLCKVGRVDDAHEIFRE 332



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRF-SAMA 96
           DV  Y++LINGLC   R+  A +LF KMVA G       TYN L+ D   KQ R  +A A
Sbjct: 95  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV-DGLCKQDRLDAARA 153

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           ++    +  +  ++  Y+ ++  L ++GR +EA     Q++E+G VP +V++N +I GLC
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   + +A ++  +M ++   P+  +++ VI G    ++ D A   L +
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 262



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y + I+G+CK  ++D A       + +G   D+  Y+ L+ G     
Sbjct: 227 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 286

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL  A+ L  +MV+QG   ++VTY  +I D   K GR   A  + + L  +K   N+  Y
Sbjct: 287 RLDSALGLLRRMVSQGCIPDVVTYTVVI-DKLCKVGRVDDAHEIFRELVANKCSPNVVTY 345

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I G CR  R +E  K + +++ +   P VVTYN +I GL       EA  +  +M E
Sbjct: 346 SALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSE 402

Query: 174 KGCFPDSTSF 183
            G  PD+ ++
Sbjct: 403 CGFVPDARTY 412



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I G C   ++D+A         +G+  +    S ++ GLC   R+ +A+E FD  +
Sbjct: 28  YNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASL 87

Query: 68  AQG-ITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVG 124
                  ++V+Y  LI +   K GR  A   L  + +       N   Y+ ++DGLC+  
Sbjct: 88  ELAHAQPDVVSYTTLI-NGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 146

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R + AR  + +  ++   P VVTYN L+  L + G + EA     QM E+G  P   SFN
Sbjct: 147 RLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 206

Query: 185 TVIQGF 190
            +I G 
Sbjct: 207 AIITGL 212



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 3/150 (2%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A++LF +   Q + A  VTYN LI          +A +LL+ ++ +  + N    S+++
Sbjct: 9   QALQLFRENPCQ-LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIIL 67

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQM-KEKG 175
            GLCR GR  +A +  D   E     P VV+Y  LINGLCK G +  A  L  +M    G
Sbjct: 68  QGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGG 127

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P++ ++N ++ G   ++  D A + + +
Sbjct: 128 CRPNAFTYNALVDGLCKQDRLDAARAVITE 157


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK   +D A +       KGI  DV  ++SLI GLC  +  K A++LF
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLF 436

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G   +  TYN LI      +    A+ LL+ +E +    N+ +Y+ +IDG C+ 
Sbjct: 437 EEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKN 496

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R EEA +  D++  +G+    VTYN LI+GLCK   + +A +L+ QM  +G  PD  ++
Sbjct: 497 KRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTY 556

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N+++  F    +  +A+  ++
Sbjct: 557 NSLLTHFCKTGDIKKAADIVQ 577



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + ING CK   ID A       + +G   D F Y++L+NGLC     K A+E+ D M+  
Sbjct: 278 VLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG 337

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  ++ TYN LI    +      A+ +L  +       N   Y+ +I  LC+  R +EA
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEA 397

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +    L+ KG++P V T+N LI GLC       A  L  +MK KGC PD  ++N +I  
Sbjct: 398 TEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDS 457

Query: 190 FLVKNETDRASSFLKK 205
                + + A + LK+
Sbjct: 458 LCSSRKLEEALNLLKE 473



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 19/205 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +C  R+++ A+         G   +V +Y++LI+G C   R++EA E+FD+M
Sbjct: 450 TYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA------LLQTLERDKYELNIEVYSLVIDGL 120
             QG++ + VTYN LI D   K  R    A      +++ L  DK+      Y+ ++   
Sbjct: 510 ELQGVSRDSVTYNTLI-DGLCKSKRVEDAAQLMDQMIMEGLRPDKF-----TYNSLLTHF 563

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  ++A   +  ++  G  P +VTY  LI+GLCK G +  A +LL  ++ KG     
Sbjct: 564 CKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTP 623

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N VIQ    +N T  A    ++
Sbjct: 624 HAYNPVIQALFKRNRTHEAMRLFRE 648



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  +R + +   + I I  +CK  ++  AI         G+  D   +++++ G      
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           L  A+ + ++MV  G     VT N LI + + KQGR   A++ +Q    + +  +   Y+
Sbjct: 254 LDGALRIKEQMVEYGCPCTDVTVNVLI-NGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLC++G  + A + +D +   GL P + TYN LI+GLCK G I EA K+L QM  +
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSR 372

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            C P++ ++N +I     +N  D A+   +
Sbjct: 373 DCSPNAVTYNAIISSLCKENRVDEATEIAR 402



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   I+G+CK+ EI+ A+K       +    +   Y+++I+ LC  NR+ EA E+ 
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIA 401

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + ++GI  ++ T+N LI          SAM L + ++      +   Y+++ID LC  
Sbjct: 402 RLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSS 461

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + EEA   L ++   G    VV YN LI+G CK   I EA+++  +M+ +G   DS ++
Sbjct: 462 RKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTY 521

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+I G       + A+  + +
Sbjct: 522 NTLIDGLCKSKRVEDAAQLMDQ 543



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y   +NG+CKI         +D+ +  G+  D++ Y+SLI+GLC    ++EAV
Sbjct: 304 FRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAV 363

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++ D+MV++  +   VTYN +I    ++     A  + + L       ++  ++ +I GL
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C     + A    +++  KG  P   TYN+LI+ LC    + EA  LL +M+  GC  + 
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNV 483

Query: 181 TSFNTVIQGF 190
             +NT+I GF
Sbjct: 484 VIYNTLIDGF 493



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+G CK + I+ A +       +G+  D   Y++LI+GLC   R+++A +L 
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM 541

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M+ +G+  +  TYN L+  ++ K G     A ++QT+       +I  Y+ +I GLC+
Sbjct: 542 DQMIMEGLRPDKFTYNSLL-THFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCK 600

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR + A + L  +  KG+V     YN +I  L K+    EA +L  +M +K   PD+ +
Sbjct: 601 AGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAIT 660

Query: 183 FNTVIQGF 190
           +  V +G 
Sbjct: 661 YKIVYRGL 668



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           G F +Y   + G+ K+ E +  IK     D   Y+ L+N L   N+LK        MV +
Sbjct: 143 GKFELYD-EVVGIVKVMEDEYRIKP----DTRFYNVLLNVLVDANKLKLVESAHSSMVRR 197

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            I  ++ T+N LI    +      A+ +++ +       +   ++ ++ G    G  + A
Sbjct: 198 RIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGA 257

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  +Q+ E G     VT N+LING CK+G I +A   + +   +G  PD  ++NT++ G
Sbjct: 258 LRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNG 317

Query: 190 F 190
            
Sbjct: 318 L 318



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +   CK  +I  A          G   D+  Y++LI+GLC   R++ A  L   +
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-VGR 125
             +G+      YNP+I   +++     AM L + +       +   Y +V  GLC   G 
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGP 674

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA     ++ E+G +P   ++ +L  GLC   M     KL+  + EK  F +     +
Sbjct: 675 IGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREI--S 732

Query: 186 VIQGFL 191
            I+GFL
Sbjct: 733 TIRGFL 738



 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 7/119 (5%)

Query: 87  EKQGRFS----AMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           E  G+F      + +++ +E D+Y +  +   Y+++++ L    + +        +  + 
Sbjct: 140 ESYGKFELYDEVVGIVKVME-DEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRR 198

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +   V T+NILI  LCK   +  A  ++ +M   G  PD T+F T++QG++     D A
Sbjct: 199 IRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGA 257


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 2/188 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++ N + K  E+     +G+  DVF +++ IN  C   R+ +AV+LF KM   G+   +V
Sbjct: 232 VKANELHKSYEVFDLACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVV 291

Query: 77  TYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TYN +I D   K GRF  A+     + R K   ++  Y ++I GL ++  +EEA + L +
Sbjct: 292 TYNNVI-DGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVE 350

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +   G  P  V +N LI+G C+KG + EA ++  +M  KG  P+  +FNT++QGF   N+
Sbjct: 351 MYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQ 410

Query: 196 TDRASSFL 203
            ++A   L
Sbjct: 411 MEQAEQVL 418



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           E  F  N + Y + + G CK   I+ A+K       + + L   VY+ LI   C    + 
Sbjct: 599 EYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVT 658

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA +L D M ++GI     TY+ LIH          A  + + +  +    N+  Y+ +I
Sbjct: 659 EAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALI 718

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G C++G+ +     L ++S  G+ P  +TY I+I+G CK G + EA +LL +M   G  
Sbjct: 719 GGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIA 778

Query: 178 PDSTSFNTVIQGFLVKNE 195
           PD+ ++N + +G+  + E
Sbjct: 779 PDTVTYNALQKGYCKERE 796



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q F+ + + Y   + G+  + +ID        A + G   +V+ Y+ L+ G C  +
Sbjct: 561 EMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKAD 620

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+++AV+ F  +  + +    V YN LI           A  L   ++          YS
Sbjct: 621 RIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYS 680

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C +GR +EA++  +++  +GL+P V  Y  LI G CK G +     +L++M   
Sbjct: 681 SLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSN 740

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++  +I G+
Sbjct: 741 GIRPNKITYTIMIDGY 756



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 87/174 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG+ LD   Y++LI G C + +++EA +L ++MV Q    +  TYN L+    +    
Sbjct: 528 LEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKI 587

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                LL   +   +  N+  Y+L+++G C+  R E+A K    L  + +    V YNIL
Sbjct: 588 DDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNIL 647

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I   C+ G + EA KL   MK +G  P   +++++I G       D A    ++
Sbjct: 648 IAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEE 701



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 8/190 (4%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N  V+   I+G C+       +R  D    KG+  +   +++L+ G C  N++++A 
Sbjct: 356 FAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAE 415

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++   +++ G++  +   + +IH   E+ G  SA+ ++  L      ++  + + ++ GL
Sbjct: 416 QVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGL 475

Query: 121 CRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C+     EA +   +L+  KGL    VT N L++GLC++G + E  ++L QM EKG   D
Sbjct: 476 CKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLD 535

Query: 180 STSFNTVIQG 189
             S+NT+I G
Sbjct: 536 RISYNTLIFG 545



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           + L+ GLC      EA+EL+ K+ A +G+ A  VT N L+H   E+        +L+ + 
Sbjct: 469 TPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQML 528

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                L+   Y+ +I G C+ G+ EEA K  +++ ++   P   TYN L+ GL   G I 
Sbjct: 529 EKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKID 588

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +  +LL + KE G  P+  ++  +++G+   +  + A  F K
Sbjct: 589 DVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFK 630



 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 65/147 (44%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  ++  +   V  Y  LI+GL      +EA E+  +M + G     V +N LI  
Sbjct: 310 LRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDG 369

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              K     A+ +   +     + N   ++ ++ G CR  + E+A + L  +   GL   
Sbjct: 370 YCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVN 429

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQM 171
           +   + +I+ L ++   + A K++ ++
Sbjct: 430 MDVCSYVIHRLMERSGFVSALKIVTKL 456


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 10/192 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   ++G+CK   +  A +        G   DV  YSS + GLC   ++  A 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAH 242

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALL-QTLERDKYELNIEVYSLVID 118
           ++ ++M        +VTYN ++ D   K G+  +A+ ++ Q    D   LN+  YS V+D
Sbjct: 243 QVLEQMRDSDHDPNVVTYNTIL-DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVD 301

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC++GR +EAR  ++ ++  G  P VVTY+ L+NGLCK G I EA + + +M  +GC P
Sbjct: 302 GLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKP 361

Query: 179 DSTSFNTVIQGF 190
           ++ ++ +++ G 
Sbjct: 362 NAVTYCSLVHGL 373



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 105/194 (54%), Gaps = 15/194 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y   ++G+CK  +ID+A++         G  L+V  YS++++GLC   R +EA  +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSV 315

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
            + M   G   ++VTY+ L+ +   K G+   A+  ++ +  +  + N   Y  ++ GLC
Sbjct: 316 MEAMARAGCRPDVVTYSSLV-NGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 122 RVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
             GR  EA + ++++S  G       P V TYN LI GLCK G I +A K   +M+ +GC
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGC 434

Query: 177 FPDSTSFNTVIQGF 190
            PD  S++T+++G 
Sbjct: 435 DPDGVSYSTIVEGL 448



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   +   Y   ++G CK  +++ +       I +G+  D  +Y+ ++  LC   RL EA
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +EL ++M+  G    L+T+N LI     ++    A +LLQT+     + ++  Y+ ++DG
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDG 196

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ GR +EA + L+++   G  P VV Y+  + GLCK G ++ A ++L QM++    P+
Sbjct: 197 LCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPN 256

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++NT++ G     + D A   +++
Sbjct: 257 VVTYNTILDGLCKSGKIDTALEMMEQ 282



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 103/189 (54%), Gaps = 8/189 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+ + ++ A          G+  DV  Y++L++GLC   RL+EA +L ++M A G 
Sbjct: 159 ISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++V Y+  ++   +     +A  +L+ +    ++ N+  Y+ ++DGLC+ G+ + A +
Sbjct: 219 APDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALE 278

Query: 132 KLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            ++Q+ S  G    VV Y+ +++GLCK G   EA  ++  M   GC PD  ++++++ G 
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 191 LVKNETDRA 199
               + + A
Sbjct: 339 CKAGKIEEA 347



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 97/174 (55%), Gaps = 8/174 (4%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFS-AMA 96
           +V  Y+++++GLC   ++  A+E+ ++M +  G    +V Y+ ++ D   K GR   A +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV-DGLCKLGRTQEARS 314

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ + R     ++  YS +++GLC+ G+ EEA + + +++ +G  P  VTY  L++GLC
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 157 KKGMIMEADKLLVQMKEKG-----CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G + EA++++ +M   G     C P  +++N +I G       D A  F ++
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 11  NFHVYGIRINGMCKI------REIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK+      R +  A+ +  C  DV  YSSL+NGLC   +++EAVE  
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER-----DKYELNIEVYSLVI 117
            +M  +G     VTY  L+H      GR + A  +++ +       D    ++  Y+ +I
Sbjct: 352 REMAMEGCKPNAVTYCSLVH-GLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALI 410

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
            GLC+ GR ++A K   ++  +G  P  V+Y+ ++ GL + G  ++A
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   +   +++L+NG     R  +   L + M A+GI   +V+YN L+    + +   
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 93  SAMALLQTL--ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            A  L++ +     +   ++  YS ++ G C+ G+ EE+R+ L ++  +GL P  + Y  
Sbjct: 63  EAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           ++  LCK   + EA +LL +M   GC P   +FNT+I G   +   + A S L+
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQ 176



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++R     N   ++ +++G  + GR  +  + L+ ++ +G+ P VV+YN L+ GLCK   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 161 IMEADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             EA++L+  M  +G    PD  +++T++ G+    + + +   LK+
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKE 107


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHV---YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG+      YG  I+G+ KI  +D A          GI L+V VYSSLI+G   
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 451

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  + ++++ +G+T  + T+N L+    + +    A+   Q+++  K   N   
Sbjct: 452 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 511

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS++I+GLCRV ++ +A     ++ + GL P  +TY  +I+GL K G I+EA  L  + K
Sbjct: 512 YSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 571

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             G  PDS S+N +I+G    N+   A +  ++ 
Sbjct: 572 ANGGIPDSASYNAMIEGLSSANKAMDAYALFEET 605



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFN 54
           ++    F  +   Y I I+G+ K        E+  A+K +G  LD   Y+++I+G C   
Sbjct: 324 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSG 383

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A +L ++M  +G    +VTY  +I D   K  R   A  L +  + +  +LN+ VY
Sbjct: 384 KVNKAYQLLEEMKVKGHPPTVVTYGSVI-DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVY 442

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   +++L +KGL P V T+N L++ L K   I EA      MK+
Sbjct: 443 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKD 502

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             C P+  +++ +I G     + ++A  F
Sbjct: 503 LKCPPNQITYSILINGLCRVRKFNKAFVF 531



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 22/218 (10%)

Query: 7   RFKGNFHVYGIRING----------MCKIREIDSAI---------KKGICLDVFVYSSLI 47
           +F+  F  Y I I            +CK   +D A+         +K  C   + Y+++I
Sbjct: 40  KFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVPC--AYAYNTMI 97

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
            G  +  +  EA  L ++  A+G    ++ YN ++    +K+    A+ + + ++RD   
Sbjct: 98  MGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP 157

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+++ID LCR G+   A +  D +   GL P V+T NI+I+ LCK   + EA  +
Sbjct: 158 -NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSI 216

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              M +K C P++ +F+++I G       D A S  +K
Sbjct: 217 FEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 254



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N     I I+ +CK ++++ A      +   +C  +   +SSLI+GL    R+ +A  L+
Sbjct: 193 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 252

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G     + Y  LI   ++   +     + + +       ++ + +  +D + + 
Sbjct: 253 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 312

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R    +++  G +P   +Y+ILI+GL K G+  E  +L   MKE+GC  D+ ++
Sbjct: 313 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 372

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI GF    + ++A   L++
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLEE 394



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 9/212 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTF 53
           L  Q+ KG+      Y   +  + K R ++ A+      K+    +V  Y+ LI+ LC  
Sbjct: 113 LERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCRE 172

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A+E+ D M   G+   ++T N +I    + Q    A ++ + ++      N   +
Sbjct: 173 GKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTF 232

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGL + GR ++A    +++ + G VPG + Y  LI    K G   +  K+  +M  
Sbjct: 233 SSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 292

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC PD T  NT +       ET++  +  ++
Sbjct: 293 TGCSPDLTLINTYMDCVFKAGETEKGRALFRE 324



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K   +D A       +  G      VY+SLI       R ++  +++ +MV  G 
Sbjct: 236 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 295

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +L   N  +   ++        AL + +    +  +   YS++I GL + G   E  +
Sbjct: 296 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 355

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + E+G V     YN +I+G CK G + +A +LL +MK KG  P   ++ +VI G  
Sbjct: 356 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 415

Query: 192 VKNETDRA 199
             +  D A
Sbjct: 416 KIDRLDEA 423



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF ++ A G   +  +Y+ LIH   +         L   ++     L+   Y+ VIDG C
Sbjct: 321 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 380

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+  +A + L+++  KG  P VVTY  +I+GL K   + EA  L  + K  G   +  
Sbjct: 381 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 440

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
            ++++I GF      D A   +++ M
Sbjct: 441 VYSSLIDGFGKVGRIDEAYLIMEELM 466



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDG----------LCRVGRWEEARKKLDQLSEKGLVP 143
           A  ++QT+ + K+      Y+++I            LC+  R +EA +  +QL +   VP
Sbjct: 29  AFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVP 88

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               YN +I G    G   EA  LL + K KG  P   ++N ++     K   + A
Sbjct: 89  CAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEA 144



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING+C++R+ + A        K G+  +   Y+++I+GL     + EA  LF + 
Sbjct: 511 TYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 570

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A G   +  +YN +I           A AL +        ++ +   +++D L +    
Sbjct: 571 KANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECL 630

Query: 127 EEA 129
           E+A
Sbjct: 631 EQA 633


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 2/167 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALL 98
           V+ ++ +IN LC   +LK+A +    M   G+   +VTYN ++H  +   GR  A  A+L
Sbjct: 221 VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVH-GYCSSGRVEAADAIL 279

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            T++R K E +   Y  +I G+C+ GR EEA K  +++ +KGL P  V YN LI+G C K
Sbjct: 280 TTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A     +M +KG  P  +++N++I    ++  TD A   +K+
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING C+           D  +  GI      Y+SL++ L   NR+KEA +LF K+
Sbjct: 398 TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++G+  +++ +N LI  +        A  LL+ ++R K   +   ++ ++ G CR G+ 
Sbjct: 458 TSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR+  D++  +G+ P  +++N LI+G  ++G I +A ++  +M + G  P   ++N +
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 187 IQGFLVKNETDRASSFLKK 205
           +QG     E D A   LK+
Sbjct: 578 VQGLCKNQEGDLAEELLKE 596



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q+ + +   YG  I+GMCK   ++ A       ++KG+     +Y++LI+G C    
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A    D+M+ +GI+  + TYN LIH  + +Q    A  +++ ++      +   Y++
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G CR    ++A    D++   G+ P   TY  L++ L KK  + EAD L  ++  +G
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             PD   FN +I G    +    A   LK
Sbjct: 462 VLPDVIMFNALIDGHCSNSNVKGAFELLK 490



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   ++G C    +++A        ++ I  D F Y SLI+G+C   RL+EA +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F++MV +G+    V YN LI D +  +G    A A    + +      +  Y+ +I  L
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLI-DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
               R +EA   + ++ EKG+ P  +TYNILING C+     +A  L  +M   G  P  
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++ +++     KN    A    KK
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKK 456



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 9/192 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R K + + + I IN +CK  ++  A          G+  ++  Y+++++G C+  R++ A
Sbjct: 216 RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
             +   M  Q I  +  TY  LI     KQGR   A  + + + +     +  +Y+ +ID
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLI-SGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G  + A    D++ +KG+ P + TYN LI+ L  +    EA+ ++ +++EKG  P
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 179 DSTSFNTVIQGF 190
           D+ ++N +I G+
Sbjct: 395 DAITYNILINGY 406



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V+  LI   C  NR  EA E F  M  +G+   + T N L+    +     +A  L   +
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R + + ++  ++++I+ LC+ G+ ++A+  +  +   G+ P +VTYN +++G C  G +
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             AD +L  MK +   PDS ++ ++I G   +   + AS   ++
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    N + Y I I+ +CK   +  A       I++G   D+  +++L++G C +N
Sbjct: 278 DMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYN 337

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA +LFD     GIT ++ +YN LI    +      A++L   +   K   NI  YS
Sbjct: 338 DVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYS 397

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ GR   A +    + + G  P V+TYNI+++ LCK  ++ +A +L   M E+
Sbjct: 398 SLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFER 457

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+ +S+N +I G+      D A +  ++
Sbjct: 458 GLTPNVSSYNILINGYCKSKRIDEAMNLFEE 488



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D+  + GI  DV+ Y+ LI G C  NR+ EA+ LF+KM  + +   +VTY+ LI D   K
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLI-DGLCK 405

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR S A  L   +       N+  Y++++D LC++   ++A +  + + E+GL P V +
Sbjct: 406 SGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSS 465

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YNILING CK   I EA  L  +M  +   PDS ++N +I G 
Sbjct: 466 YNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGL 508



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 22/196 (11%)

Query: 16  GIRINGMCKIREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           G+ ING  ++R+     DS + +G  LD   Y +LINGLC     +EA EL  KM  Q +
Sbjct: 157 GLCING--EVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVV 214

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY--------ELNIEVYSLVIDGLCRV 123
              +V YN +I D   K G       L T  RD Y        + ++  Y+ +I G C +
Sbjct: 215 RPNVVIYN-MIVDGLCKDG-------LVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGL 266

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+W E  + L  + ++ +   V TYNILI+ LCKKGM+ +A  +   M E+G  PD  +F
Sbjct: 267 GQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTF 326

Query: 184 NTVIQGFLVKNETDRA 199
           NT++ G+ + N+   A
Sbjct: 327 NTLMSGYCLYNDVVEA 342



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)

Query: 15  YGIRINGMCKI---REIDSAIKKG----ICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CKI   RE    + K     +  +V +Y+ +++GLC    + EA +L+  +V
Sbjct: 186 YGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVV 245

Query: 68  AQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +GI  ++ TY  LIH       W +  R     L   ++R+   LN+  Y+++ID LC+
Sbjct: 246 GRGIDPDVFTYTCLIHGFCGLGQWREVTRL----LCDMVDRN-VNLNVYTYNILIDALCK 300

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G   +A    + + E+G  P +VT+N L++G C    ++EA KL     E G  PD  S
Sbjct: 301 KGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWS 360

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +I G+   N  D A S   K
Sbjct: 361 YNILIIGYCKNNRIDEALSLFNK 383



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G CK   ID A+        K +  ++  YSSLI+GLC   R+  A ELF  + 
Sbjct: 361 YNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIH 420

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G +  ++TYN ++    + Q    A+ L   +       N+  Y+++I+G C+  R +
Sbjct: 421 DGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRID 480

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA    +++  + LVP  VTYN LI+GLCK G I  A +L   M + G   D  ++N + 
Sbjct: 481 EAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILF 540

Query: 188 QGF 190
             F
Sbjct: 541 DAF 543



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKG-ICLDVFVYSSLINGLCTFNR 55
           +  ++   N   Y   I+G+CK        E+ SAI  G    +V  Y+ +++ LC    
Sbjct: 384 MNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQL 443

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ELF+ M  +G+T  + +YN LI+   + +    AM L + + R     +   Y+ 
Sbjct: 444 VDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNC 503

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +IDGLC+ GR   A +  + + + G    V+TYNIL +   K
Sbjct: 504 LIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ ++  +        A+ L  +M  +GIT  +VT + LI+          A ++L  + 
Sbjct: 81  FNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVL 140

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y+LN    + ++ GLC  G   +A +  D +  +G +   VTY  LINGLCK G+  
Sbjct: 141 KRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTR 200

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           EA +LL +M+ +   P+   +N ++ G 
Sbjct: 201 EAFELLHKMEGQVVRPNVVIYNMIVDGL 228



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +++++  + ++  +  A     Q+  +G+ P +VT +ILIN  C  G +  A  +L  + 
Sbjct: 81  FNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVL 140

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           ++G   ++ +  T+++G  +  E  +A  F
Sbjct: 141 KRGYQLNAITLTTIMKGLCINGEVRKALEF 170


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 7/202 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E   K N   +   +NG+CK   ++ A       +++G+  DV  Y++L++G C    L 
Sbjct: 74  EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLH 133

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E++ +F +M  +G+  ++VT+  LIH   +      A+AL+  +      +N   ++ +I
Sbjct: 134 ESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 193

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C+ G  ++A   ++++ + G+ P VV YN LING CK G +  A +L+ +M+ K   
Sbjct: 194 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 253

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD  +++T+I G+      D A
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSA 275



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 96/176 (54%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  +V+ Y+ L+  LC   RL+EAV +   M   G     VTYN L+   + + G 
Sbjct: 2   VRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA-AFCRAGE 60

Query: 92  FSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
                 + +L R++   + N+  ++ +++GLC+ GR E ARK  D++  +GL P VV+YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L++G CK G + E+  +  +M ++G  PD  +F ++I         ++A + + +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 176



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +R K +   Y   I+G CK+  +DSA       +KKG+  D   YSSLI GLC   
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A ELF+ M+  G+  +  TY  LI  + ++     A++L   + R     ++  YS
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL---------------INGLCKKG 159
           ++I+GL +  R +EA + L +L  +  VP  + Y+ L               + G C KG
Sbjct: 366 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 425

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EADK+   M ++    D + ++ +I G        +A SF K+
Sbjct: 426 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 471



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK+  +D A +       K +  DV  YS++I+G C    L  A +L  KM+
Sbjct: 224 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 283

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  + +TY+ LI    E++    A  L + + +   + +   Y+ +IDG C+ G  E
Sbjct: 284 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 343

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    D++  KG++P VVTY++LINGL K     EA +LL ++  +   PD+  ++ ++
Sbjct: 344 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   +   I+G CK   +D A+       K GI   V  Y++LING C   R
Sbjct: 177 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 236

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A EL  +M A+ +  ++VTY+ +I    +     SA  L Q + +     +   YS 
Sbjct: 237 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   R  +A +  + + + G+ P   TY  LI+G CK+G + +A  L  +M  KG
Sbjct: 297 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 356

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  +++ +I G      T  A   L K
Sbjct: 357 VLPDVVTYSVLINGLSKSARTKEAHRLLFK 386


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  + D A       + +GI  DV  Y+S+I  LC    + +A+E+ + MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E ++  YSL++D LC+ GR  
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 379 CAYAKQGKVDQA 390



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I  +CK   ++ A       I +G+     VY+SLI+GLCT N+
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            + A EL  +M+ +GI    + +N +I D+  K+GR   +  L + + R   + N+  Y+
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  G+ +EA K L  +   GL P  VTY+ LING CK   + +A  L  +M+  
Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAA 600



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A 
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+ ++   G   EL TYN ++H   + +    A+ + Q L     +L    ++++ID L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +VGR +EA+      S  GLVP   TY ++   +  +G++ E D+L + M++ GC  DS
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
              N +++  L + E  RA ++L 
Sbjct: 722 GMLNFIVRELLQRGEITRAGTYLS 745



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 10/201 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCT 52
           +TE     N   Y I + G+C       A++           G   DV  Y+++ING   
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
                +A   + +M+ +GI  ++VTYN +I    + Q    AM +L T+ ++    +   
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C  G+ +EA   L ++   G+ P VVTY++L++ LCK G  MEA K+   M 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
           ++G  P+ T++ T++QG+  K
Sbjct: 329 KRGLKPEITTYGTLLQGYATK 349



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 14  VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDK 65
            YGI I   C+   +D       + IKKG  +D   ++ L+ GLC   R  +A+++   +
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M   G    + +YN L+    ++     A+ LL  +  D+      ++  Y+ VI+G  +
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A     ++ ++G++P VVTYN +I  LCK   + +A ++L  M + G  PD  +
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N+++ G+    +   A  FLKK
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKK 291



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  DV  YS L++ LC   R  EA ++FD M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  E+ TY  L+     K        LL  + R+    +  V+S++I    + G+ 
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++ ++GL P  VTY  +I  LCK G + +A     QM ++G  P +  +N++
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 187 IQGFLVKNETDRASSFL 203
           I G    N+ +RA   +
Sbjct: 448 IHGLCTCNKWERAEELI 464



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  K     YG  + G      +       D  ++ GI  D +V+S LI     
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAK 383

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ +A+ +F KM  QG+    VTY  +I     K GR   AM   + +  +       
Sbjct: 384 QGKVDQAMLVFSKMRQQGLNPNAVTYGAVI-GILCKSGRVEDAMLYFEQMIDEGLSPGNI 442

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +I GLC   +WE A + + ++ ++G+    + +N +I+  CK+G ++E++KL   M
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              G  P+  ++NT+I G+ +  + D A   L 
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  +V  Y++LING C   ++ EA++L   MV+ G+    VTY+ LI+   +    
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L + +E      +I  Y++++ GL +  R   A++   +++E G    + TYNI+
Sbjct: 563 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 622

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           ++GLCK  +  +A    +QM +  C  D    + +FN +I   L     D A
Sbjct: 623 LHGLCKNKLTDDA----LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVY 113
           ++A  +FD+++ +G  A +   N  + D   +    +A++    + R   D+   ++  Y
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALAD-VARDSPAAAVSRYNRMARAGADEVTPDLCTY 90

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
            ++I   CR GR +     L  + +KG     + +  L+ GLC      +A D +L +M 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E GC P+  S+N +++G   +N +  A   L
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELL 181


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG  K  + D A       + +GI  DV  YSS+I  LC    + +A+E+ + MV
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 263

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E N+  YS +++ LC+ GR  
Sbjct: 264 KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 323

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   FN +I
Sbjct: 324 EARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 384 CAYAKQEKVDQA 395



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 42/237 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+G C   ++D A K        G+  D+  Y +LING C  +R+ +A+ 
Sbjct: 513 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +MV+ G++  ++TYN ++   +  +   +A  L  ++ +   +L +  Y++++ GLC
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 632

Query: 122 R-----------------------------------VGRWEEARKKLDQLSEKGLVPGVV 146
           +                                    GR +EA+      S  GLVP V 
Sbjct: 633 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           TY+++   L ++G + E D L + M+E GC  DS   N++++  L + +  RA ++L
Sbjct: 693 TYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +     N   YG  I+ +CK   +D A       I +G+  ++ VY+SLI+GLCT ++
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDK 461

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI    + +N +I D+  K+GR   +  L   + R   + +I  Y+
Sbjct: 462 WDKAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYN 520

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P +VTY  LING C+   + +A  L  +M   
Sbjct: 521 TLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++N ++QG      T  A
Sbjct: 581 GVSPNIITYNIILQGLFHTRRTAAA 605



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 17/210 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + HV+ I I    K  ++D A+       + G+  +V  Y ++I+ LC    + +A+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             F++M+ +G+T  ++ Y  LIH     D W+K        +L+ L+R    LN   ++ 
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL----ILEMLDR-GICLNTIFFNS 486

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID  C+ GR  E+ K  D +   G+ P ++TYN LI+G C  G + EA KLL  M   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++ T+I G+   +  D A +  K+
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKE 576



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 38/197 (19%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVEL-------------------------------- 62
           G   DVF Y++L+ GLC  NR +EA+EL                                
Sbjct: 158 GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217

Query: 63  ------FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
                 + +M+ +GI  ++VTY+ +I    + Q    AM +L T+ ++    +   Y+ +
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + G C  G+ +EA   L ++   G+ P VVTY+ L+N LCK G   EA K+   M ++G 
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 177 FPDSTSFNTVIQGFLVK 193
            PD  ++ T++QG+  K
Sbjct: 338 EPDIATYRTLLQGYATK 354



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 11/204 (5%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FD 64
           H Y I I   C+   +D       + +KKG  +D   ++ L+ GLC   R  +A+++   
Sbjct: 93  HTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLR 152

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLC 121
           +M   G   ++ +YN L+    ++     A+ LL  +  D+      ++  Y+ V++G  
Sbjct: 153 RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  PD  
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N+++ G+    +   A   LKK
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKK 296



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +N +CK       R+I DS  K+G+  D+  Y +L+ G  T   L E   L 
Sbjct: 305 NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV  GI  +   +N LI    +++    AM +   + +     N+  Y  VID LC+ 
Sbjct: 365 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGL---------------------------- 155
           G  ++A    +Q+ ++GL P ++ Y  LI+GL                            
Sbjct: 425 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFF 484

Query: 156 -------CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                  CK+G ++E++KL   M   G  PD  ++NT+I G  +  + D A+  L
Sbjct: 485 NSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  +V  YSSL+N LC   R  EA ++FD M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  ++ TY  L+     K       ALL  + R+  + +  V++++I    +  + 
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++ + GL P VV Y  +I+ LCK G + +A     QM ++G  P+   + ++
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 452

Query: 187 IQGFLVKNETDRASSFL 203
           I G    ++ D+A   +
Sbjct: 453 IHGLCTCDKWDKAEELI 469



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 52/251 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++    N  VY   I+G+C   + D A       + +GICL+   ++S+I+  C   R
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E+ +LFD MV  G+  +++TYN LI D     G+   A  LL ++     + +I  Y 
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLI-DGCCLAGKMDEATKLLASMVSVGVKPDIVTYG 555

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI---------------------- 152
            +I+G CRV R ++A     ++   G+ P ++TYNI++                      
Sbjct: 556 TLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKS 615

Query: 153 -------------NGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNE 195
                        +GLCK  +  EA    ++M +  C  D    + +FN +I   L    
Sbjct: 616 GTQLELSTYNIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 196 TDRASSFLKKN 206
            D A      +
Sbjct: 672 MDEAKDLFAAH 682


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHV---YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG+      YG  I+G+ KI  +D A          GI L+V VYSSLI+G   
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 696

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  + ++++ +G+T  + T+N L+    + +    A+   Q+++  K   N   
Sbjct: 697 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 756

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS++I+GLCRV ++ +A     ++ + GL P  +TY  +I+GL K G I+EA  L  + K
Sbjct: 757 YSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 816

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             G  PDS S+N +I+G    N+   A +  ++ 
Sbjct: 817 ANGGIPDSASYNAMIEGLSSANKAMDAYALFEET 850



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFN 54
           ++    F  +   Y I I+G+ K        E+  A+K +G  LD   Y+++I+G C   
Sbjct: 569 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSG 628

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A +L ++M  +G    +VTY  +I D   K  R   A  L +  + +  +LN+ VY
Sbjct: 629 KVNKAYQLLEEMKVKGHPPTVVTYGSVI-DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVY 687

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   +++L +KGL P V T+N L++ L K   I EA      MK+
Sbjct: 688 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKD 747

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P+  +++ +I G     + ++A  F ++
Sbjct: 748 LKCPPNQITYSILINGLCRVRKFNKAFVFWQE 779



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N     I I+ +CK ++++ A      +   +C  +   +SSLI+GL    R+ +A  L+
Sbjct: 438 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 497

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G     + Y  LI   ++   +     + + +       ++ + +  +D + + 
Sbjct: 498 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 557

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R    +++  G +P   +Y+ILI+GL K G+  E  +L   MKE+GC  D+ ++
Sbjct: 558 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 617

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI GF    + ++A   L++
Sbjct: 618 NAVIDGFCKSGKVNKAYQLLEE 639



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 9/212 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTF 53
           L  Q+ KG+      Y   +  + K R ++ A+      K+    +V  Y+ LI+ LC  
Sbjct: 358 LERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCRE 417

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A+E+ D M   G+   ++T N +I    + Q    A ++ + ++      N   +
Sbjct: 418 GKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTF 477

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGL + GR ++A    +++ + G VPG + Y  LI    K G   +  K+  +M  
Sbjct: 478 SSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 537

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC PD T  NT +       ET++  +  ++
Sbjct: 538 TGCSPDLTLINTYMDCVFKAGETEKGRALFRE 569



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y I I  + ++RE D  +       + G  ++V ++++LI       R+  A
Sbjct: 190 KFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAA 249

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  + A++V YN  I D + K G+   +      ++      +   Y+ +I 
Sbjct: 250 LSLLDEMKSNSLDADIVLYNVCI-DCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIG 308

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  +QL +   VP    YN +I G    G   EA  LL + K KG  P
Sbjct: 309 VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 368

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++N ++     K   + A
Sbjct: 369 SVIAYNCILTCLGKKRRVEEA 389



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K   +D A       +  G      VY+SLI       R ++  +++ +MV  G 
Sbjct: 481 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 540

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +L   N  +   ++        AL + +    +  +   YS++I GL + G   E  +
Sbjct: 541 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 600

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + E+G V     YN +I+G CK G + +A +LL +MK KG  P   ++ +VI G  
Sbjct: 601 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 660

Query: 192 VKNETDRA 199
             +  D A
Sbjct: 661 KIDRLDEA 668



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y+ LI  L         + LF +M   G    +  +  LI   + ++GR  +A++LL  
Sbjct: 197 AYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIR-VFAREGRVDAALSLLDE 255

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ +  + +I +Y++ ID   + G+ + + K   ++   GL+P  VTY  +I  LCK   
Sbjct: 256 MKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANR 315

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA +L  Q+++    P + ++NT+I G+    + D A   L++
Sbjct: 316 LDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLER 360



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF ++ A G   +  +Y+ LIH   +         L   ++     L+   Y+ VIDG C
Sbjct: 566 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 625

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+  +A + L+++  KG  P VVTY  +I+GL K   + EA  L  + K  G   +  
Sbjct: 626 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 685

Query: 182 SFNTVIQGF 190
            ++++I GF
Sbjct: 686 VYSSLIDGF 694



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING+C++R+ + A        K G+  +   Y+++I+GL     + EA  LF + 
Sbjct: 756 TYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 815

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A G   +  +YN +I           A AL +        ++ +   +++D L +    
Sbjct: 816 KANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECL 875

Query: 127 EEA 129
           E+A
Sbjct: 876 EQA 878


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+   +D+A +      +  D + Y+ LI  LC   R+ +A+ L D M+ +
Sbjct: 113 AYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRR 172

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+       G   AMA+L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 173 GCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 232

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L++L   G  P  V+Y  L+ GLC      + ++L  +M EK C P+  +F+ +I+ 
Sbjct: 233 RELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 292

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 293 FCRGGMVERAIQVLEQ 308



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R + +A   G  +DVF Y++L+ G C +  L  A  L   M    +  +  TY PLI   
Sbjct: 97  RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVL 153

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            ++     A++LL  + R   + N+  Y+++++ +CR   +E+A   LD++  KG  P +
Sbjct: 154 CDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNI 213

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN++ING+C++G + +A +LL ++   G  PD+ S+ T+++G       D       +
Sbjct: 214 VTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAE 273

Query: 206 NM 207
            M
Sbjct: 274 MM 275



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 106/248 (42%), Gaps = 45/248 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D   Y++L+ GLC 
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCA 260

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R  +  ELF +M+ +      VT++ LI                              
Sbjct: 261 SKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTL 320

Query: 84  -----DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                ++  KQGR   A  LL  +       +   Y+ V+ GLCR  RW++A++ L+++ 
Sbjct: 321 CNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMV 380

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                P  VT+N  I  LC+KG+I +A  L+ QM E GC     ++N ++ GF V+   D
Sbjct: 381 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHID 440

Query: 198 RASSFLKK 205
            A    + 
Sbjct: 441 SALELFRS 448



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 2/177 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +++G   +V  Y+ L+  +C  +  ++A+ + D+M A+G T  +VTYN +I +   
Sbjct: 166 LDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVII-NGMC 224

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           ++GR   A  LL  L    ++ +   Y+ ++ GLC   RW++  +   ++ EK  +P  V
Sbjct: 225 REGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEV 284

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           T+++LI   C+ GM+  A ++L QM E GC  ++T  N VI     +   D A   L
Sbjct: 285 TFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLL 341



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +  + N   Y + +  MC+       +  +D    KG   ++  Y+ +ING+C   
Sbjct: 168 DMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREG 227

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ +A EL +++ + G   + V+Y  L+      +       L   +       N   + 
Sbjct: 228 RVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 287

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I   CR G  E A + L+Q++E G        NI+IN +CK+G + +A KLL  M   
Sbjct: 288 MLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSY 347

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PD+ S+ TV++G       D A   L +
Sbjct: 348 GCNPDTISYTTVLKGLCRAERWDDAKELLNE 378



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C    +D A +      +G C  +V  ++ L++  C    L+EA+E
Sbjct: 452 KPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIE 511

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+TYN L+    +      A+ LL  L       ++  +S +I  L 
Sbjct: 512 LVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILS 571

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R EEA +    + + G+ P  V YN ++ GLCK+  I  A      M   GC P+ +
Sbjct: 572 KEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNES 631

Query: 182 SFNTVIQGF 190
           ++  +I+G 
Sbjct: 632 TYIILIEGL 640



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 14  VYGIRINGMCKIREIDSAI---KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   +NG C    IDSA+   +   C  +   Y++L+ GLC   RL  A EL  +M+  
Sbjct: 425 TYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRG 484

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
                +VT+N L+    +K     A+ L++ +       N+  Y+ ++DG+ +    E+A
Sbjct: 485 DCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDA 544

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  L  KG+ P V+T++ +I  L K+  I EA +L   +++ G  P +  +N ++ G
Sbjct: 545 LELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLG 604

Query: 190 FLVKNETDRASSFL 203
              + E D A  F 
Sbjct: 605 LCKRCEIDNAIDFF 618



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE     N  +  I IN +CK   +D A K        G   D   Y++++ GLC   R
Sbjct: 309 MTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAER 368

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A EL ++MV        VT+N  I    +K     A+ L++ +      + +  Y+ 
Sbjct: 369 WDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNA 428

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++G C  G  + A +    +  K   P  +TY  L+ GLC    +  A +L+ +M    
Sbjct: 429 LVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVAEMLRGD 485

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           C P+  +FN ++  F  K   + A   +++ M
Sbjct: 486 CPPNVVTFNVLVSFFCQKGFLEEAIELVEQMM 517


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 111/201 (55%), Gaps = 8/201 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK + ++  +       ++G+  +   Y++LI+G         A  +F +M
Sbjct: 358 AYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+ G+  +++TYN L+          +A+ + + +++   +L+I  Y+ +I+ LC+ G+ 
Sbjct: 418 VSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKV 477

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+       LS KG+ P VVTY  +++G C+KG+  EAD L V+MKE G  P+S ++NT+
Sbjct: 478 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           I+  L ++  + AS+ L K M
Sbjct: 538 IRARL-RDGDEAASAELIKEM 557



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 43/215 (20%)

Query: 19  INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C   +I E    +D  ++ G   D   +++L++GL   N+  EAV L ++MV +G 
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 211

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR--------- 122
             +LVTY  +I+   ++     A+ LL  +E+ K E ++ +Y+ +IDGLC+         
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271

Query: 123 --------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
                                      GRW +A + L  + EK + P +V +N LI+   
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331

Query: 157 KKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGF 190
           K+G ++EA+KL  +M K K CFPD  ++NT+I+GF
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGF 366



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 18/205 (8%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ING+CK  E D A+       K  I  DV +Y+++I+GLC +  + +A +LF+KM
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276

Query: 67  VAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             +GI  ++ TYNPLI     +  W    R  +  L + +  D     +  ++ +ID   
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD-----LVFFNALIDAFV 331

Query: 122 RVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           + G+  EA K  D++   K   P VV YN LI G CK   + E  ++  +M ++G   ++
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++ T+I GF    + D A    K+
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQ 416



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G    +   +SL+NG C  NR+ EAV L 
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + VT+  L+H  ++      A+AL++ +     + ++  Y  VI+GLC+ 
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++ +  +   VV YN +I+GLCK   + +A  L  +M+ KG  PD  ++
Sbjct: 229 GEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 184 NTVIQ 188
           N +I 
Sbjct: 289 NPLIS 293



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L++ +   N+    + L ++M   GI+  L TY+  I+    +     A+A+L  + 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y  +I   + +++G C   R  EA   +DQ+ E G  P  VT+  L++GL +     
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  KGC PD  ++  VI G   + E D A + L K
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++   GN   Y   I+G  + R+ D+A       +  G+  D+  Y+ L++GLC   
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNG 440

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A+ +F+ M  + +  ++VTY  +I    +         L  +L     + N+  Y+
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 500

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G  EEA     ++ E G +P   TYN LI    + G    + +L+ +M+  
Sbjct: 501 TMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSC 560

Query: 175 GCFPDSTSFNTV 186
           G   D+++F  V
Sbjct: 561 GFAGDASTFGLV 572



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/112 (19%), Positives = 54/112 (48%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   + + +   +I  +S ++  + ++ +++      +Q+   G+   + TY+I IN
Sbjct: 59  AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C++  +  A  +L +M + G  P   + N+++ GF   N    A + + +
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 170


>gi|414591617|tpg|DAA42188.1| TPA: hypothetical protein ZEAMMB73_899186 [Zea mays]
          Length = 265

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VYG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F +M
Sbjct: 22  VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFQDGRTVPAKVKFHEM 81

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI  +  TYN ++   ++ +    A+ L + L     ++NI   + +I G+ +  R 
Sbjct: 82  TESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRV 141

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA+     +S  GLVP VVTY+I+I  L K+G++ EA+ +   M+  GC P+S   N V
Sbjct: 142 EEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHV 201

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L KNE  RA ++L K
Sbjct: 202 VRELLKKNEIVRAGAYLSK 220



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 2/145 (1%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           +++A+ +FD MV+ GI  + V Y  L+ + + K GR    ++L + + +   + +  +Y+
Sbjct: 1   MEKALRVFDAMVSAGIEPDDVVYGTLV-NGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 59

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGL + GR   A+ K  +++E G+     TYNI++ GL K     EA  L  +++  
Sbjct: 60  IIIDGLFQDGRTVPAKVKFHEMTESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAM 119

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
               +  + NT+I G       + A
Sbjct: 120 NVKINIITLNTMIAGMFQTRRVEEA 144


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 7/202 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E   K N   +   +NG+CK   ++ A       +++G+  DV  Y++L++G C    L 
Sbjct: 216 EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLH 275

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E++ +F +M  +G+  ++VT+  LIH   +      A+AL+  +      +N   ++ +I
Sbjct: 276 ESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C+ G  ++A   ++++ + G+ P VV YN LING CK G +  A +L+ +M+ K   
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD  +++T+I G+      D A
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSA 417



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 99/182 (54%), Gaps = 3/182 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R + S ++ G+  +V+ Y+ L+  LC   RL+EAV +   M   G     VTYN L+   
Sbjct: 138 RFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV-AA 196

Query: 86  WEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           + + G       + +L R++   + N+  ++ +++GLC+ GR E ARK  D++  +GL P
Sbjct: 197 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 256

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            VV+YN L++G CK G + E+  +  +M ++G  PD  +F ++I         ++A + +
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316

Query: 204 KK 205
            +
Sbjct: 317 AQ 318



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +R K +   Y   I+G CK+  +DSA       +KKG+  D   YSSLI GLC   
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A ELF+ M+  G+  +  TY  LI  + ++     A++L   + R     ++  YS
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL---------------INGLCKKG 159
           ++I+GL +  R +EA + L +L  +  VP  + Y+ L               + G C KG
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EADK+   M ++    D + ++ +I G        +A SF K+
Sbjct: 568 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK+  +D A +       K +  DV  YS++I+G C    L  A +L  KM+
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 425

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  + +TY+ LI    E++    A  L + + +   + +   Y+ +IDG C+ G  E
Sbjct: 426 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 485

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    D++  KG++P VVTY++LINGL K     EA +LL ++  +   PD+  ++ ++
Sbjct: 486 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   +   I+G CK   +D A+       K GI   V  Y++LING C   R
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A EL  +M A+ +  ++VTY+ +I    +     SA  L Q + +     +   YS 
Sbjct: 379 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   R  +A +  + + + G+ P   TY  LI+G CK+G + +A  L  +M  KG
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  +++ +I G      T  A   L K
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFK 528



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+ L  +   G+ P V TYNIL+  LC +G + EA 
Sbjct: 114 YAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++  M+  GC P++ ++NT++  F    E D A
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 206



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA   L ++ R     N+  Y++++  LC  GR EEA   +  +   G  P  VTYN L+
Sbjct: 135 SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV 194

Query: 153 NGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF 190
              C+ G +  A++++  M+E+G   P+  +FN+++ G 
Sbjct: 195 AAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG  K  + D A       + +GI  DV  YSS+I  LC    + +A+E+ + MV
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 263

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E N+  YS +++ LC+ GR  
Sbjct: 264 KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 323

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   FN +I
Sbjct: 324 EARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 384 CAYAKQEKVDQA 395



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 42/237 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+G C   ++D A K        G+  D+  Y +LING C  +R+ +A+ 
Sbjct: 513 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +MV+ G++  ++TYN ++   +  +   +A  L  ++ +   +L +  Y++++ GLC
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 632

Query: 122 R-----------------------------------VGRWEEARKKLDQLSEKGLVPGVV 146
           +                                    GR +EA+      S  GLVP V 
Sbjct: 633 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           TY+++   L ++G + E D L + M+E GC  DS   N++++  L + +  RA ++L
Sbjct: 693 TYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +     N   YG  I+ +CK   +D A       I +G+  ++ VY+SLI+GLCT ++
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDK 461

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI    + +N +I D+  K+GR   +  L   + R   + +I  Y+
Sbjct: 462 WDKAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYN 520

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P +VTY  LING C+   + +A  L  +M   
Sbjct: 521 TLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++N ++QG      T  A
Sbjct: 581 GVSPNIITYNIILQGLFHTRRTAAA 605



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 17/210 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + HV+ I I    K  ++D A+       + G+  +V  Y ++I+ LC    + +A+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             F++M+ +G+T  ++ Y  LIH     D W+K        +L+ L+R    LN   ++ 
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL----ILEMLDR-GICLNTIFFNS 486

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID  C+ GR  E+ K  D +   G+ P ++TYN LI+G C  G + EA KLL  M   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++ T+I G+   +  D A +  K+
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKE 576



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 38/197 (19%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVEL-------------------------------- 62
           G   DVF Y++L+ GLC  NR +EA+EL                                
Sbjct: 158 GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217

Query: 63  ------FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
                 + +M+ +GI  ++VTY+ +I    + Q    AM +L T+ ++    +   Y+ +
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + G C  G+ +EA   L ++   G+ P VVTY+ L+N LCK G   EA K+   M ++G 
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 177 FPDSTSFNTVIQGFLVK 193
            PD  ++ T++QG+  K
Sbjct: 338 EPDIATYRTLLQGYATK 354



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 11/204 (5%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FD 64
           H Y I I   C+   +D       + +KKG  +D   ++ L+ GLC   R  +A+++   
Sbjct: 93  HTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLR 152

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLC 121
           +M   G   ++ +YN L+    ++     A+ LL  +  D+      ++  Y+ V++G  
Sbjct: 153 RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  PD  
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N+++ G+    +   A   LKK
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKK 296



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +N +CK       R+I DS  K+G+  D+  Y +L+ G  T   L E   L 
Sbjct: 305 NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV  GI  +   +N LI    +++    AM +   + +     N+  Y  VID LC+ 
Sbjct: 365 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGL---------------------------- 155
           G  ++A    +Q+ ++GL P ++ Y  LI+GL                            
Sbjct: 425 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFF 484

Query: 156 -------CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                  CK+G ++E++KL   M   G  PD  ++NT+I G  +  + D A+  L
Sbjct: 485 NSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  +V  YSSL+N LC   R  EA ++FD M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  ++ TY  L+     K       ALL  + R+  + +  V++++I    +  + 
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++ + GL P VV Y  +I+ LCK G + +A     QM ++G  P+   + ++
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 452

Query: 187 IQGFLVKNETDRASSFL 203
           I G    ++ D+A   +
Sbjct: 453 IHGLCTCDKWDKAEELI 469



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 52/251 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++    N  VY   I+G+C   + D A       + +GICL+   ++S+I+  C   R
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E+ +LFD MV  G+  +++TYN LI D     G+   A  LL ++     + +I  Y 
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLI-DGCCLAGKMDEATKLLASMVSVGVKPDIVTYG 555

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI---------------------- 152
            +I+G CRV R ++A     ++   G+ P ++TYNI++                      
Sbjct: 556 TLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKS 615

Query: 153 -------------NGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNE 195
                        +GLCK  +  EA    ++M +  C  D    + +FN +I   L    
Sbjct: 616 GTQLELSTYNIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 196 TDRASSFLKKN 206
            D A      +
Sbjct: 672 MDEAKDLFAAH 682


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++  YS+LINGLC   RLKEA+ELF++MV++  I  + +TYN LI+          A+ +
Sbjct: 278 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKI 337

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ ++++    N+  YS +++G C+ GR EEA++  D++   GL P  V Y  LIN  C+
Sbjct: 338 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCR 397

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA +LL  M E  C  D+ +FN ++ G   +   + A   L++
Sbjct: 398 AGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLER 445



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 9/182 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING C   ++D A+K        G   +VF YS+L+NG C   RL+EA E+FD+M
Sbjct: 317 TYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEM 376

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G+  + V Y  LI + + + GR   AM LL+ +  +K   +   +++++ GLCR GR
Sbjct: 377 KSLGLKPDTVGYTTLI-NFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGR 435

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +EEA   L++L  +G+     +Y I++N LC++G + +A +L+  M  +G  P   + N 
Sbjct: 436 FEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNE 495

Query: 186 VI 187
           ++
Sbjct: 496 LL 497


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  + D A       + +GI  DV  Y+S+I  LC    + +A+E+ + MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E ++  YSL++D LC+ GR  
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 379 CAYANQGKVDQA 390



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I  +CK   ++ A       I +G+     VY+SLI+GLCT N+
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            + A EL  +M+ +GI    + +N +I D+  K+GR   +  L + + R   + N+  Y+
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  G+ +EA K L  +   GL P  VTY+ LING CK   + +A  L  +M+  
Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAA 600



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A 
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+ ++   G   EL TYN ++H   + +    A+ + Q L     +L    ++++ID L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +VGR +EA+      S  GLVP   TY ++   +  +G++ E D+L + M++ GC  DS
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
              N +++  L + E  RA ++L 
Sbjct: 722 GMLNFIVRELLQRGEITRAGTYLS 745



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 10/201 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCT 52
           +TE     N   Y I + G+C       A++           G   DV  Y+++ING   
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
                +A   + +M+ +GI  ++VTYN +I    + Q    AM +L T+ ++    +   
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G C  G+ +EA   L ++   G+ P VVTY++L++ LCK G  MEA K+   M 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
           ++G  P+ T++ T++QG+  K
Sbjct: 329 KRGLKPEITTYGTLLQGYATK 349



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 14  VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDK 65
            YGI I   C+   +D       + IKKG  +D   ++ L+ GLC   R  +A+++   +
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M   G    + +YN L+    ++     A+ LL  +  D+      ++  Y+ VI+G  +
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A     ++ ++G++P VVTYN +I  LCK   + +A ++L  M + G  PD  +
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N+++ G+    +   A  FLKK
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKK 291



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  DV  YS L++ LC   R  EA ++FD M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  E+ TY  L+     K        LL  + R+    +  V+S++I      G+ 
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKV 387

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A     ++ ++GL P  VTY  +I  LCK G + +A     QM ++G  P +  +N++
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 187 IQGFLVKNETDRASSFL 203
           I G    N+ +RA   +
Sbjct: 448 IHGLCTCNKWERAEELI 464



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  K     YG  + G      +       D  ++ GI  D +V+S LI     
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAN 383

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ +A+ +F KM  QG+    VTY  +I     K GR   AM   + +  +       
Sbjct: 384 QGKVDQAMLVFSKMRQQGLNPNAVTYGAVI-GILCKSGRVEDAMLYFEQMIDEGLSPGNI 442

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +I GLC   +WE A + + ++ ++G+    + +N +I+  CK+G ++E++KL   M
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              G  P+  ++NT+I G+ +  + D A   L 
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  +V  Y++LING C   ++ EA++L   MV+ G+    VTY+ LI+   +    
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L + +E      +I  Y++++ GL +  R   A++   +++E G    + TYNI+
Sbjct: 563 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 622

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           ++GLCK  +  +A    +QM +  C  D    + +FN +I   L     D A
Sbjct: 623 LHGLCKNKLTDDA----LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVY 113
           ++A  +FD+++ +G  A +   N  + D   +    +A++    + R   D+   ++  Y
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALAD-VARDSPAAAVSRYNRMARAGADEVTPDLCTY 90

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
            ++I   CR GR +     L  + +KG     + +  L+ GLC      +A D +L +M 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E GC P+  S+N +++G   +N +  A   L
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELL 181


>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
 gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
          Length = 500

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
           +   R + +  +YG+ I+G CK   +D A        +++ I  DV +Y+S+++GLC  N
Sbjct: 73  IKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSN 132

Query: 55  RLKEAVELFDK-MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           R  EA +  D+ MV QG +  +VTY  LI    + +    AM +   +   K +  I  Y
Sbjct: 133 RFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPTIVSY 192

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++IDGL + GR  +A + + ++   G    VV Y  LI+GLCK G + +A  L   MK 
Sbjct: 193 SVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKR 252

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G FP+  ++ T+I  F   + T+ A
Sbjct: 253 SGAFPNQRTYATLIDTFCRNDRTETA 278



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H +   I+ + K   +  A +        GI  DV  +++LI G C    ++ A E+F
Sbjct: 10  NQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEIF 69

Query: 64  DKMV-AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD-KYELNIEVYSLVIDGL 120
            +M+ +     +   Y  LI D + K+ R   A+ LL+ +  + + + ++ +Y+ ++DGL
Sbjct: 70  QEMIKSNRCQPDCFLYGVLI-DGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 128

Query: 121 CRVGRWEEARKKLDQ-LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           CR  R+ EA K LD+ +  +G  P VVTY  LI G CK   +  A  +   M E+   P 
Sbjct: 129 CRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPT 188

Query: 180 STSFNTVIQGF 190
             S++ +I G 
Sbjct: 189 IVSYSVIIDGL 199



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 11/204 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           N   Y   I+  C+    ++A      I+    LDV +Y+++++GLC   RL +A  LF 
Sbjct: 258 NQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLDVAMYTAVVSGLCRERRLDDARALFR 317

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRV 123
           +M   G++A+   YN L+H  +       A  +L+ L  D   + N+  Y+ VI G C  
Sbjct: 318 EMRLAGVSADTHAYNVLLHGAFRSGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCC-- 375

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              E       ++ ++G+ P   TY+ LI+ L   G I  A  L  +M   G  P S   
Sbjct: 376 --LESGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIRRAFDLCEEMLASGLSPPSGVL 433

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
             V+         D A+  ++  M
Sbjct: 434 GRVVARLCWSRRGDLAAKLIEMAM 457



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 46/245 (18%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREI--------DSAIKKGICLDVFVYSSLINGLCTFNRL 56
           E+R + +  +Y   ++G+C+            ++ +++G    V  Y+SLI G C   ++
Sbjct: 111 ERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKM 170

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF------------------------ 92
           K A+ +++ M+ + I   +V+Y+ +I D   K GR                         
Sbjct: 171 KLAMTIWNAMLERKIQPTIVSYSVII-DGLSKAGRVYDAYRVVREMETLGCELNVVIYTT 229

Query: 93  ------------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
                        A AL + ++R     N   Y+ +ID  CR  R E A    D + +  
Sbjct: 230 LIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYC 289

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +  V  Y  +++GLC++  + +A  L  +M+  G   D+ ++N ++ G      ++ A 
Sbjct: 290 PL-DVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEAF 348

Query: 201 SFLKK 205
             L++
Sbjct: 349 RILEE 353



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N   ++ +ID L +  R  +A + L+ + + G+ P VVT+  LI G CK  M+  A ++ 
Sbjct: 10  NQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEIF 69

Query: 169 VQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +M K   C PD   +  +I G+  +   DRA   L++
Sbjct: 70  QEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLRE 107


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 8/195 (4%)

Query: 17  IRINGMCKIR-EIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           + I  +CK    +D+A++       +G   D + Y +LINGLC   ++ EA ELF +M  
Sbjct: 160 VLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMET 219

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +  +  +VTY  LIH   + +   SA+ LL+ +     + N+  YS ++DG C+ G    
Sbjct: 220 KACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + LD +  +  +P ++TY+ L++GLCK+G + EA ++L +MK +G  PD+  +  +I 
Sbjct: 280 ALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339

Query: 189 GFLVKNETDRASSFL 203
           GF    +   A++FL
Sbjct: 340 GFCDICKFHEAANFL 354



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  ING+C++ +I  A +       K     V  Y+SLI+GLC    L  A+ L ++
Sbjct: 192 YTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEE 251

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M ++GI   + TY+ L+  + +      A+ LL  +   ++  N+  YS ++ GLC+ G+
Sbjct: 252 MASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGK 311

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF-- 183
            +EA + LD++  +GL P    Y  +I+G C      EA   L +M   G  P+  ++  
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371

Query: 184 -----NTVIQGFLVKNETDRA 199
                N V+QG L     +RA
Sbjct: 372 HVRIHNIVVQG-LCTEHPNRA 391



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 50/240 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+C+ +++DSAI+       KGI  +VF YSSL++G C       A+EL D M
Sbjct: 228 TYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMM 287

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++     ++TY+ L+H    K+G+   A+ +L  ++      +  +Y  +I G C + +
Sbjct: 288 VSRRHLPNMITYSTLVH-GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICK 346

Query: 126 WEEARKKLDQLSEKGLVPGVVTY-------NILINGLC---------------------- 156
           + EA   LD++   G+ P  +T+       NI++ GLC                      
Sbjct: 347 FHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISID 406

Query: 157 ------------KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                        KG + +A  L+ +M   GC PD  ++N V+  F  + +   ++  ++
Sbjct: 407 AKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQ 466



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFPDSTSFNTVIQGF 190
           + E G+ P V + N+LI  LCK    M+A  ++  +M  +GC PDS ++ T+I G 
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGL 201



 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 3   LTEQRFKGNFHV--YGIRINGMC------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  R   + HV  + I + G+C        +   S   +GI +D   + SL+N  C   
Sbjct: 362 ISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKG 421

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            L +A  L D+MV  G   + VT+N ++   W+++    +  L+Q
Sbjct: 422 DLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQ 466


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S +++GI  D   Y+ L+NGL    ++ +A E+F +M  +GI  ++ +Y  LI D + K 
Sbjct: 585 SMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLI-DGFSKL 643

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A ++   + +     N+ +Y++++ G CR G  E+A++ LD++S KG  P  VTY
Sbjct: 644 GNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTY 703

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             +I+G CK G + EA +L  +MK KG  PDS  + T++ G    N+ +RA +  + N
Sbjct: 704 CTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETN 761



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+ K R  D+A       +  G  +D  +Y   I  +     +++A  LFD M
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGM 376

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+T     Y  LI   + ++       LL  +++    ++   Y   + G+C  G  
Sbjct: 377 ITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDL 436

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   + ++   G  P VV Y  LI    +K    +A ++L +M+E+G  PD+  +N++
Sbjct: 437 DGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSL 496

Query: 187 IQGFLVKNETDRASSFL 203
           I G     + D A SFL
Sbjct: 497 IIGLSKAKKMDEARSFL 513



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +++ + F  N   Y   I+G CK  ++  A +       KG+  D FVY++L++G C  N
Sbjct: 690 EMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLN 749

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW-----EKQGRFSAMALLQTLERDKY-EL 108
            ++ A+ +F+    +G  +    +N LI  NW     + +     +  L     DK+ + 
Sbjct: 750 DVERAITIFETN-EKGCASSSAPFNALI--NWVFKFGKTELTTDMINRLMDGSFDKFGKP 806

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N   Y+++ID LC+ G  E A++    + +  L+P V+TY  L+NG  K G   E   + 
Sbjct: 807 NDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVF 866

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++   G  PD+  ++ +I  FL +  T +A
Sbjct: 867 DEVIAAGIEPDNIMYSVIINAFLKEGMTTKA 897



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  + GMC   ++D A          G   +V +Y++LI      +R  +AV +  +
Sbjct: 421 YTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKE 480

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  QGI  +   YN LI    + +    A + L  +  + ++ +   Y   I G    G 
Sbjct: 481 MREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGE 540

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +  A K + ++ E G++P  V    LIN  CKKG ++EA      M E+G   D+ ++  
Sbjct: 541 FASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTV 600

Query: 186 VIQGFLVKN 194
           ++ G LVKN
Sbjct: 601 LMNG-LVKN 608



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 46/213 (21%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   YG  I+G  K+  +       D  ++ G+  +V +Y+ L+ G C   
Sbjct: 620 EMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSG 679

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A EL D+M  +G     VT                                   Y 
Sbjct: 680 EIEKAKELLDEMSGKGFPPNAVT-----------------------------------YC 704

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G   EA +  D++  KGLVP    Y  L++G C+   +  A  +  +  EK
Sbjct: 705 TIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEK 763

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           GC   S  FN +I       +T+  +  + + M
Sbjct: 764 GCASSSAPFNALINWVFKFGKTELTTDMINRLM 796



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+ I +  + Y + + G+C+   L  A  +  +M A G    +V Y  LI    +K    
Sbjct: 413 KRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFG 472

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ +L+ +       +   Y+ +I GL +  + +EAR  L ++ E G  P   TY   I
Sbjct: 473 DAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFI 532

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  + G    ADK + +M E G  P+      +I  +  K +   A S  +
Sbjct: 533 SGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFR 584



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+      Y+ LI+GLC   RL++A  L  +M + G+ A+ V Y+ LI    + +   +
Sbjct: 274 KGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADA 333

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L+  +    + ++  +Y   I  + + G  E+A+   D +   G+ PG   Y  LI 
Sbjct: 334 ANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIE 393

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  ++  + +  +LLV++K++       ++ T ++G     + D A + +K+
Sbjct: 394 GFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKE 445



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 36/198 (18%)

Query: 28  IDSAIKKGICLD--VFVYSS-----------------LINGLCTFNRLKEAVELFDKMVA 68
           ID  I+KG  LD  VFV+SS                 L++ L   NRL    +++  MV 
Sbjct: 159 IDGYIEKGF-LDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKGMVE 217

Query: 69  QGITAELVTYNPLIHDNW-EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + +  ++ +Y  LI  +  +   + +   LL+T E       +   +L +D         
Sbjct: 218 RNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEE------LGTATLNVD--------- 262

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA +    +S KGLVP   +YN+LI+GLCK+  + +A  LLV+M   G F D+ +++ +I
Sbjct: 263 EALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILI 322

Query: 188 QGFLVKNETDRASSFLKK 205
            G L     D A+  + +
Sbjct: 323 DGLLKGRNADAANGLVHE 340



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I I+ +CK   +++A        K  +   V  Y+SL+NG     R  E   
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYELNIEVYSLV 116
           +FD+++A GI  + + Y+ +I+   ++     A+ LL  +       D  +L+I     +
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRAL 924

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           + G  +VG  E A K ++ +     +P   T   LIN  C
Sbjct: 925 LSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESC 964



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQT 100
            Y+ +I+ LC    L+ A ELF  M    +   ++TY  L++  ++K GR S M ++   
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLN-GYDKMGRRSEMFSVFDE 868

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNILINGL 155
           +     E +  +YS++I+   + G   +A   LDQ+  K  V       + T   L++G 
Sbjct: 869 VIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGF 928

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTS 182
            K G +  A+K++  M      PDS++
Sbjct: 929 AKVGEMEVAEKVVENMVRLKYIPDSST 955


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 7/202 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E   K N   +   +NG+CK   ++ A       +++G+  DV  Y++L++G C    L 
Sbjct: 216 EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLH 275

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E++ +F +M  +G+  ++VT+  LIH   +      A+AL+  +      +N   ++ +I
Sbjct: 276 ESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C+ G  ++A   ++++ + G+ P VV YN LING CK G +  A +L+ +M+ K   
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD  +++T+I G+      D A
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSA 417



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 3/166 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R + S ++ G+  +V+ Y+ L+  LC   RL+EAV +   M   G     VTYN L+   
Sbjct: 138 RFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV-AA 196

Query: 86  WEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           + + G       + +L R++   + N+  ++ +++GLC+ GR E ARK  D++  +GL P
Sbjct: 197 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 256

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            VV+YN L++G CK G + E+  +  +M ++G  PD  +F ++I  
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 302



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +R K +   Y   I+G CK+  +DSA       +KKG+  D   YSSLI GLC   
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A ELF+ M+  G+  +  TY  LI  + ++     A++L   + R     ++  YS
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL---------------INGLCKKG 159
           ++I+GL +  R +EA + L +L  +  VP  + Y+ L               + G C KG
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EADK+   M ++    D + ++ +I G        +A SF K+
Sbjct: 568 LMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK+  +D A +       K +  DV  YS++I+G C    L  A +L  KM+
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 425

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  + +TY+ LI    E++    A  L + + +   + +   Y+ +IDG C+ G  E
Sbjct: 426 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 485

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    D++  KG++P VVTY++LINGL K     EA +LL ++  +   PD+  ++ ++
Sbjct: 486 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   +   I+G CK   +D A+       K GI   V  Y++LING C   R
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A EL  +M A+ +  ++VTY+ +I    +     SA  L Q + +     +   YS 
Sbjct: 379 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   R  +A +  + + + G+ P   TY  LI+G CK+G + +A  L  +M  KG
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  +++ +I G      T  A   L K
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFK 528



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+ L  +   G+ P V TYNIL+  LC +G + EA 
Sbjct: 114 YAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            ++  M+  GC P++ ++NT++  F    E D A
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 206



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA   L ++ R     N+  Y++++  LC  GR EEA   +  +   G  P  VTYN L+
Sbjct: 135 SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV 194

Query: 153 NGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF 190
              C+ G +  A++++  M+E+G   P+  +FN+++ G 
Sbjct: 195 AAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 11/208 (5%)

Query: 9    KGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
              N  +Y I +  +CK       +  + S        D++ Y+ LIN LC   RL++A  
Sbjct: 1729 PANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQG 1788

Query: 62   LFDKMVAQGITAELVTYNPLIHDNWEK-QGRFSAMALLQTLER--DKYELNIEV-YSLVI 117
            L + M A+    ++VTYN LIH    K  GRF      +  E   DK      V Y++VI
Sbjct: 1789 LVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVI 1848

Query: 118  DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            D L RV   E+A+K LD + E G    +VTYN+LIN   K GM+ +A  L V+M  +GC 
Sbjct: 1849 DALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCI 1908

Query: 178  PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            PD  ++N+++ GF    + + A+    +
Sbjct: 1909 PDVVTYNSIVDGFCKAGKVEEANKLFAE 1936



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 11/204 (5%)

Query: 11   NFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN----RLKEA 59
            + + Y I IN +CK+  ++ A      ++   C  D+  Y++LI+GLC       R++ A
Sbjct: 1766 DIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERA 1825

Query: 60   VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
              LF++MV +G T   VTY  +I      +    A  +L  +  +    ++  Y+++I+ 
Sbjct: 1826 FRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINR 1885

Query: 120  LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
              + G  ++A     ++  +G +P VVTYN +++G CK G + EA+KL  +MK +G FP+
Sbjct: 1886 FAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPN 1945

Query: 180  STSFNTVIQGFLVKNETDRASSFL 203
              ++ ++    L       A ++L
Sbjct: 1946 GRTYTSITDACLKAGRMQDAHAYL 1969



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 39   DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            + F YS+++ G C     ++A+ L + M    + A    YN ++    +      A+ LL
Sbjct: 1696 NAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLL 1755

Query: 99   QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             ++       +I  Y+++I+ LC+VGR E+A+  ++ +  +     +VTYN LI+GLC+K
Sbjct: 1756 HSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRK 1815

Query: 159  G----MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            G     +  A +L  +M +KG  P S ++  VI   L
Sbjct: 1816 GNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALL 1852



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 1/162 (0%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
            + G     F ++ L+  L    + K A + L  +       A   TY+ ++    E    
Sbjct: 1654 RHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGET 1713

Query: 92   FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              A+ALL+ +++ +   N ++Y++++  LC+ G+ +EA   L  ++     P + TYNIL
Sbjct: 1714 RQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNIL 1773

Query: 152  INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
            IN LCK G + +A  L+  M+ + C  D  ++NT+I G   K
Sbjct: 1774 INALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRK 1815



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y + I+ + +++  + A K        G   D+  Y+ LIN       + +A++LF +M
Sbjct: 1843 TYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEM 1902

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              +G   ++VTYN ++ D + K G+   A  L   ++      N   Y+ + D   + GR
Sbjct: 1903 PTRGCIPDVVTYNSIV-DGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGR 1961

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             ++A   L ++ ++GLV   ++Y  LI+ +CK G      +LL +M EKG  P+  +FN 
Sbjct: 1962 MQDAHAYLVEMRKEGLV-DAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNV 2020

Query: 186  VIQGFLVKNETDRA 199
            V +    ++ TD A
Sbjct: 2021 VFEALSKESNTDDA 2034



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 14   VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y + IN   K   +D A+        +G   DV  Y+S+++G C   +++EA +LF +M
Sbjct: 1878 TYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEM 1937

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             A+GI     TY   I D   K GR   A A L  + ++     I  Y  +I  +C++G+
Sbjct: 1938 KARGIFPNGRTYTS-ITDACLKAGRMQDAHAYLVEMRKEGLVDAIS-YVALISTICKLGK 1995

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             +   + L ++ EKG  P +VT+N++   L K+    +A  ++ +++++   P
Sbjct: 1996 GKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +GI I+  CK  ++D A+         G+  D+ VY+SLI G C    L     LFD++
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G +   +TYN LI   + K G+   A  + + +       N+  Y+ +IDGLC VG+
Sbjct: 274 LERGDSPCAITYNTLIR-GFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK 332

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA + L+ + EK   P  VTYNI+IN LCK G++ +A +++  MK++   PD+ ++N 
Sbjct: 333 TKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G   K + D AS  L
Sbjct: 393 LLGGLCAKGDLDEASKLL 410



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---------DVFVYSSLINGLCTF 53
           + ++R + +   Y I + G+C   ++D A K    +         DV  Y++LI+GLC  
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           NRL +A++++D +V +    + VT N L++   +      AM L + +   K   N + Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C+ G    A+  L ++    L P V  YN L++ LCK+G + +A +L  +M+ 
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              FPD  SFN +I G L   +   A S L
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCT 52
           L E +F G   +  VY   I G C   E+D         +++G       Y++LI G C 
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +LKEA E+F+ M+ +G+   + TY  LI           A+ LL  +     E N   
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++I+ LC+ G   +A + ++ + ++   P  +TYNIL+ GLC KG + EA KLL  M 
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414

Query: 173 EKGCF--PDSTSFNTVIQGFLVKNETDRA 199
           +   +  PD  S+N +I G   +N   +A
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQA 443



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G   +V+ ++ L+ GLC      +AV L  +M    +  ++ +YN +I    E +  
Sbjct: 134 LKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKEL 193

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L   ++      ++  + ++ID  C+ G+ +EA   L ++   GL   +V Y  L
Sbjct: 194 EKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I G C  G +     L  ++ E+G  P + ++NT+I+GF    +   AS   +
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+++I+G C    L  A  L  KM    +   +  YN L+    ++     A  L + +
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +RD    ++  ++++IDG  + G  + A   L  +S  GL P + TY+ LIN   K G +
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA     +M + G  PD+   ++V++  + + ETD+ +  +KK
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKK 659



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 44/221 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK+ ++  A       I++G+  +V+ Y+ LI+GLC   + KEA++L + M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 67  VAQ-------------------GITAELV----------------TYNPLIHDNWEKQGR 91
           + +                   G+ A+ V                TYN L+     K   
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDL 403

Query: 92  FSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
             A  LL  + +D    + +V  Y+ +I GLC+  R  +A    D L EK      VT N
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           IL+N   K G + +A +L  Q+ +     +S ++  +I GF
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+  G  L  F  ++L+  L      + A   + KM+        V+ + L+    + + 
Sbjct: 64  AVDSGSSL-AFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRK 122

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  +L  + +  +  N+  +++++ GLCR     +A   L ++    L+P V +YN 
Sbjct: 123 TGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNT 182

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +I G C+   + +A +L  +MK  GC     ++  +I  F    + D A  FLK+
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKE 237


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 102/168 (60%), Gaps = 1/168 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++  YS+LI GLC   +LKEA+E F++MV++  I  + +TYN LI+   ++     A  +
Sbjct: 225 NLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTI 284

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ ++ +    N+  YS++++G C+ GR +EA++  +++   G+ P  ++Y  LIN LC+
Sbjct: 285 LEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCR 344

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + EA +LL QMK+K C  D+ +FN ++ G   +   D A   ++K
Sbjct: 345 TGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQK 392



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING C+  ++D A          G   +VF YS L+NG C   RL+EA E+F+++
Sbjct: 264 TYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEI 323

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G+  + ++Y  LI +   + GR   A  LLQ ++      +   +++++ GLCR GR
Sbjct: 324 KSLGMKPDTISYTTLI-NCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGR 382

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++EA   + +L  +G      +Y I++N L +KG + +A +LL  M  +G  P   + NT
Sbjct: 383 FDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNT 442



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y   I G+C+  ++  AI        K  I  D   Y+ LING C   ++  A  +
Sbjct: 225 NLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTI 284

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
            + M + G +  +  Y+ L+ + + K+GR   A  +   ++    + +   Y+ +I+ LC
Sbjct: 285 LEFMKSNGCSPNVFNYSVLM-NGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLC 343

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R GR +EA + L Q+ +K      VT+N+++ GLC++G   EA  ++ ++  +G + +  
Sbjct: 344 RTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKG 403

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+  V+     K E  +A+  L
Sbjct: 404 SYRIVLNFLTQKGELRKATELL 425



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 9/181 (4%)

Query: 15  YGIRINGMCK------IREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + +NG CK       +E+ + IK  G+  D   Y++LIN LC   R+ EA EL  +M 
Sbjct: 300 YSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMK 359

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +   A+ VT+N ++     ++GRF  A+ ++Q L  + + LN   Y +V++ L + G  
Sbjct: 360 DKDCRADTVTFNVML-GGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGEL 418

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A + L  +  +G VP   T N L+  LC  GM+ +A + L+ + E G  P+  S+ T+
Sbjct: 419 RKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTL 478

Query: 187 I 187
           +
Sbjct: 479 V 479



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           N  ++++++   CR G  + A + + ++ S +   P +VTY+ LI GLC+ G + EA + 
Sbjct: 189 NTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEF 248

Query: 168 LVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             +M  K    PD+ ++N +I GF  + + DRA + L+
Sbjct: 249 FEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILE 286


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK   +D+A+         GI  DV +Y+SL+NGLC   R
Sbjct: 167 MVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGR 226

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            ++A  L   M+ + I  +++T+N LI D + K+G+   A  L   + +     NI  Y+
Sbjct: 227 WRDADLLLRGMMKRKIKPDVITFNALI-DAFVKEGKLLDAKELYNEMIQMSIAPNIFTYT 285

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR +EAR+    +  KG  P VV Y  LING CK   + +A K+  +M +K
Sbjct: 286 SLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQK 345

Query: 175 GCFPDSTSFNTVIQGF 190
           G   ++ ++ T+IQGF
Sbjct: 346 GLTGNTITYTTLIQGF 361



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 37/195 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   D+F ++SLING C  NR++EA+ + ++MV  GI  ++V Y  +I D+  K G 
Sbjct: 133 MKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTII-DSLCKNGH 191

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA--------RKKL--------- 133
             +A++L   +E      ++ +Y+ +++GLC  GRW +A        ++K+         
Sbjct: 192 VDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNA 251

Query: 134 ------------------DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
                             +++ +  + P + TY  LINGLC +G + EA ++   M+ KG
Sbjct: 252 LIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKG 311

Query: 176 CFPDSTSFNTVIQGF 190
           CFPD  ++ ++I GF
Sbjct: 312 CFPDVVAYTSLINGF 326



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 3/174 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  I+  I  ++F Y+SLINGLC   RL EA ++F  M  +G   ++V Y  LI+   + 
Sbjct: 270 NEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 329

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    AM +   + +     N   Y+ +I G   VG+   A++    +  +G+ P + TY
Sbjct: 330 KKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTY 389

Query: 149 NILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRA 199
           N+L++ LC  G + +A  +   M+++   G  P+  ++N ++ G     + ++A
Sbjct: 390 NVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA 443



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 45/207 (21%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CK ++++ A+K       KG+  +   Y++LI G     +   A E+F  M
Sbjct: 318 AYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHM 377

Query: 67  VAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           V++G+   + TYN L+H    N +          +Q  E D    NI  Y++++ GLC  
Sbjct: 378 VSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYN 437

Query: 124 GRWEEA--------RKKLD---------------------------QLSEKGLVPGVVTY 148
           G+ E+A        ++ +D                            L  KG+ P VVTY
Sbjct: 438 GKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTY 497

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKG 175
             +I+GL ++G+++EA  L  +MKE G
Sbjct: 498 TTMISGLFREGLMLEAHVLFRKMKEDG 524



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+N +    +    + L   +   G++ +L T N L++   +      A + L  L 
Sbjct: 74  FTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLM 133

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +E +I  ++ +I+G C   R EEA   ++Q+ E G+ P VV Y  +I+ LCK G + 
Sbjct: 134 KLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVD 193

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            A  L  QM+  G  PD   + +++ G 
Sbjct: 194 NALSLFNQMENYGIRPDVVMYTSLVNGL 221



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 1/160 (0%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L NGL +  +  EA++LF  MV       ++ +  L++   + +     + L + L+   
Sbjct: 43  LRNGLHSL-QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMG 101

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              ++   +L+++  C+  +   A   L +L + G  P + T+  LING C    I EA 
Sbjct: 102 VSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAM 161

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++ QM E G  PD   + T+I         D A S   +
Sbjct: 162 SMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQ 201


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 97/171 (56%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+G   D + Y +LI+GLC F R+ EA +LF +MV +     +VTY  LI+     +   
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD 244

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AM  ++ ++    E N+  YS ++DGLC+ GR  +A +  + +  +G  P +VTY  LI
Sbjct: 245 EAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            GLCK+  I EA +LL +M  +G  PD+  +  VI GF   ++   A++FL
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFL 355



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 15/212 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+        Y   ING+C  + +D A++       KGI  +VF YSSL++GLC   
Sbjct: 217 EMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDG 276

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  +A+ELF+ M+A+G    +VTY  LI    ++Q    A+ LL  +     + +  +Y 
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYG 336

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI-------LINGLCKKGMIMEADKL 167
            VI G C V ++ EA   LD++   G+ P  +T+NI       ++ GLC       A  L
Sbjct: 337 KVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCTN-YPSRAFTL 395

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + M+ +G   +  + +++++    K E  +A
Sbjct: 396 YLSMRSRGISVEVETLDSLVKCLCKKGEFQKA 427



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  I+G+C+   ID A       ++K     V  Y+SLINGLC    + EA+   ++
Sbjct: 193 YTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEE 252

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI   + TY+ L+ D   K GR   AM L + +       N+  Y+ +I GLC+  
Sbjct: 253 MKGKGIEPNVFTYSSLM-DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + +EA + LD+++ +GL P    Y  +I+G C      EA   L +M   G  P+  ++N
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWN 371

Query: 185 TVIQ 188
             ++
Sbjct: 372 IHVK 375



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 4/179 (2%)

Query: 25  IREIDSAIKK---GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           I   DSA  +   G   D   +  +++ L + N+ K A ++  +M  +           +
Sbjct: 33  IAVFDSATAEYANGYLHDQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDILLSI 92

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
                     F ++ +   ++    + + + Y  V+  L    +   A K    + E GL
Sbjct: 93  CRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGL 152

Query: 142 VPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            P V + N+LI  LC+    ++A  K+  +M ++GC PDS ++ T+I G       D A
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEA 211


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 44/232 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK++  D A         KG+  ++  ++ +INGLC   RLKE  E+ 
Sbjct: 17  NVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVL 76

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  +G   + VTYN L+ + + K+G F  A+ L   + R+    N+  Y+ +I+ +C+
Sbjct: 77  VEMSRKGYVPDEVTYNTLV-NGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 123 VGR-----------------------------------WEEARKKLDQLSEKGLVPGVVT 147
            G                                     +EA + L++++  G +P +VT
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN LING C  G + EA  LL  M  KG  PD  S++T+I GF    E DRA
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRA 247



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK      A       ++ G+  +V  Y+SLIN +C    L  A+E FD+M
Sbjct: 90  TYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQM 149

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+     TY  +I + + +QG    A  +L  + R  +  +I  Y+ +I+G C +GR
Sbjct: 150 HVRGLCPNERTYTTII-NGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGR 208

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA   L  +  KG++P VV+Y+ +I+G  +   +  A ++ V+M  K   PD+ ++++
Sbjct: 209 MEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSS 268

Query: 186 VIQGF 190
           +IQG 
Sbjct: 269 LIQGL 273



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T   F  +   Y   ING C +  ++ AI        KG+  DV  YS++I+G     
Sbjct: 183 EMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ 242

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A ++  +M+ + +  + VTY+ LI    E++    A  + Q +   K   +   Y+
Sbjct: 243 ELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT 302

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C+ G   +A    D++ +KG +P  VTYN+LINGL K+    EA +LL+++   
Sbjct: 303 TLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYD 362

Query: 175 GCFPDSTSFNTVIQ 188
              P + ++NT+I+
Sbjct: 363 DSIPSAVTYNTLIE 376



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 29/213 (13%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING  +   +D A        + G    +  Y++LING C   R++EA+ L 
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV----------- 112
             MV +G+  ++V+Y+ +I          S  A  Q L+R  +++ +E+           
Sbjct: 217 QDMVGKGVLPDVVSYSTII----------SGFARNQELDR-AFQMKVEMIGKSVLPDAVT 265

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC   R  EA     ++    L P   TY  LIN  CK+G + +A  L  +M 
Sbjct: 266 YSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMI 325

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KG  PD+ ++N +I G   +  +  A   L K
Sbjct: 326 QKGFLPDAVTYNVLINGLNKQARSKEARRLLLK 358



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   +V  Y+++I+G C   R  EA      M  +G+   L+T+N +I +   + GR 
Sbjct: 11  RNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII-NGLCRDGRL 69

Query: 93  SAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + +L  + R  Y  +   Y+ +++G C+ G + +A     ++   GL P VVTY  L
Sbjct: 70  KETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSL 129

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           IN +CK G +  A +   QM  +G  P+  ++ T+I GF  +   D A   L +
Sbjct: 130 INSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNE 183



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            +  F +M   G    +VTYN +I    + +    A   L+++     E N+  ++++I+
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLCR GR +E  + L ++S KG VP  VTYN L+NG CK+G   +A  L  +M   G  P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  ++ ++I         +RA  F  +
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQ 148



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++       N   Y   IN MCK   ++ A++       +G+C +   Y+++ING     
Sbjct: 113 EMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQG 172

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA  + ++M   G    +VTYN LI+ +        A+ LLQ +       ++  YS
Sbjct: 173 LLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYS 232

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  R    + A +   ++  K ++P  VTY+ LI GLC++  + EA  +  +M   
Sbjct: 233 TIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTI 292

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              PD  ++ T+I  +  + + ++A
Sbjct: 293 KLPPDEFTYTTLINAYCKEGDLNKA 317



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 22/202 (10%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+C+ R +  A       +   +  D F Y++LIN  C    L +A+ L D+M
Sbjct: 265 TYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEM 324

Query: 67  VAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYE------------LNIEVY 113
           + +G   + VTYN LI+  N + + + +   LL+    D                NIE  
Sbjct: 325 IQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFK 384

Query: 114 SLV--IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           S V  + G C  G  +EA +  + +  K   P    YN++I+G C+ G +++A KL  +M
Sbjct: 385 SAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEM 444

Query: 172 KEKGCFPDSTSFNTVIQGFLVK 193
                 P + +   +++    +
Sbjct: 445 VHVDFVPHTVTVLALVKALFTE 466



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 24/178 (13%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  CK  +++ A       I+KG   D   Y+ LINGL    R KEA  L  K+
Sbjct: 300 TYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL----------------QTLERDKYELNI 110
                    VTYN LI +    + + SA+AL+                +++    ++ N 
Sbjct: 360 FYDDSIPSAVTYNTLIENCCNIEFK-SAVALVKGFCMKGLMDEADQVFESMINKNHKPNE 418

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +Y+++I G CR+G   +A K   ++     VP  VT   L+  L  +GM  E ++++
Sbjct: 419 AIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVI 476


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 105/199 (52%), Gaps = 8/199 (4%)

Query: 15  YGIRINGMCKIREI--------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   I+G+CK   I        D A+++G   D   Y+S+I+GLC   R++E  E F +M
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G   + VTY  LI    + +    A  + + + +    ++   Y++++DGLC+ GR 
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 308

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA      + E+G V  VVTY+ L++G C +G +  A +L  +M ++GC P+  S+N +
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 368

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G     +  +A  + +K
Sbjct: 369 IRGLCRAGKLAKAYFYFEK 387



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  ++ +INGLC   RL EA  + ++ V  G   + VTYN  I    + +    A  LL
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++  K       Y+ ++DGL + GR +EA   L+Q+ EKG  P + TY ++I+GL K 
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G + EA ++ V M   GC PD+  +  +I+G     + + A +  K+
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKE 172



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 49/225 (21%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ING+C+ + +D A       ++ G   D   Y+  I+GLC   R+ +A +L  KM
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +      VTY  L+ D   K GR   AMA+L+ +        ++ Y++VIDGL + GR
Sbjct: 69  DEKKCLPTTVTYTALV-DGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGR 127

Query: 126 WEEARKK-LDQLSE-------------KGL-------------------------VPGVV 146
            EEAR+  +D L               KGL                         VP VV
Sbjct: 128 VEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVV 187

Query: 147 TYNILINGLCKKGMIMEADKLL-VQMKEKGCFPDSTSFNTVIQGF 190
           TY  LI+GLCK G I+EA ++   +  E+G  PD+ ++ ++I G 
Sbjct: 188 TYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGL 232



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ++G+CK   +  A        ++G    V  YS+L++G C+   +  AVELF +M+
Sbjct: 295 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC-RVGRW 126
            +G    LV+YN +I           A    + L + +   ++  ++  + GLC R+   
Sbjct: 355 DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTV 414

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +  +  + +  +G  P + +Y+IL++G+C+ G +  A ++  +M  +G  PD   FNT+
Sbjct: 415 SDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTL 474

Query: 187 IQGFLVKNETDRA 199
           I+   +    D A
Sbjct: 475 IRWLCIAGRVDEA 487



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G  K + I  A       ++ G  +    Y+ +++GLC   R+ EA   F  M 
Sbjct: 260 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAME 319

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G  A +VTY+ L+ D +  +G  SA + L + +     E N+  Y+++I GLCR G+ 
Sbjct: 320 ERGCVATVVTYSALM-DGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 378

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +A    ++L ++ L P V T+N  ++GLC++   + +  +L   M  +G  P+  S++ 
Sbjct: 379 AKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSI 438

Query: 186 VIQG 189
           ++ G
Sbjct: 439 LMDG 442



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 9/176 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT-FNRLKEAVEL 62
           N   Y I I G+C+  ++  A       +++ +C DV+ +++ ++GLC   + + + VEL
Sbjct: 361 NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVEL 420

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F+ MV+QG +  L +Y+ L+       G   A+ + + +       ++ V++ +I  LC 
Sbjct: 421 FESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCI 480

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            GR +EA +   +L E+   P   +Y  L++GL +   + EA  L   MK +GC P
Sbjct: 481 AGRVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAP 535



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P +V + ++INGLC++  + EA  +L +    GC PD  ++N  I G       D A   
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 203 LKK 205
           LKK
Sbjct: 65  LKK 67



 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 43/148 (29%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N H Y I ++G+C+   ++ A       + +G+  DV V+++LI  LC   R
Sbjct: 424 MVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGR 483

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+E+F ++  +              D W                          Y  
Sbjct: 484 VDEALEVFRELERRSAP-----------DAWS-------------------------YWS 507

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++DGL R  R EEAR     +  +G  P
Sbjct: 508 LLDGLSRCERMEEARLLSFHMKLQGCAP 535


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKGN---FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG+      YG  I+G+ KI  +D A         KGI L+V +YSSLI+G   
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  + ++++ +G+T  + T+N L+    + +    A+   Q+++  K   N   
Sbjct: 702 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS++I GLC++ ++ +A     ++ ++G  P V TY  +I+GL K G I+EAD L  + K
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EKG   DS  +N +I+G    N    A
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDA 848



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I I+G+ K      A +       +G  LD   Y+++I+G C   ++ +A 
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAY 639

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L ++M  +G    +VTY  +I D   K  R   A  L +  +    ELN+ +YS +IDG
Sbjct: 640 QLLEEMKTKGHEPTVVTYGSVI-DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             +VGR +EA   +++L +KGL P V T+N L++ L K   I EA      MK+  C P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             +++ +I G     + ++A  F ++
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQE 784



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I+ +CK  ++++A+         G+  +V   + +++ LC   RL +A  +F
Sbjct: 408 NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIF 467

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVI----- 117
           + +  +    + VTY  LI +   + GR      L     D  ++ N  VY+ +I     
Sbjct: 468 EGLDHKTCRPDAVTYCSLI-EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 118 ------------------------------DGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                                         D + + G  E+ R    ++   G +P   +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y ILI+GL K G   EA +L   MKE+GC  D+ ++NTVI GF    + ++A   L++
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E + KG   N  +Y   I+G  K+  ID A       ++KG+  +V+ ++ L++ L    
Sbjct: 679 EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+  F  M     T   +TY+ LIH   + +    A    Q +++  ++ N+  Y+
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL + G   EA    ++  EKG V     YN +I GL       +A +L  + + K
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 175 GC 176
           GC
Sbjct: 859 GC 860



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I  +   R+ D  +       + G  ++V ++++LI       R+  A
Sbjct: 195 KFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAA 254

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  +  ++V YN  I D + K G+   A      ++ +   L+   Y+ +I 
Sbjct: 255 LSLLDEMKSNSLEPDVVLYNVCI-DCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIG 313

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R  EA +  + + +   VP    YN +I G    G   +A  LL + + KGC P
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              S+N ++     K + D A
Sbjct: 374 SVVSYNCILSCLGRKGQVDEA 394



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L T       + LF +M   G    +  +  LI   + ++GR  +A++LL  
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR-VFAREGRVDAALSLLDE 260

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ +  E ++ +Y++ ID   + G+ + A K   ++   GLV   VTY  +I  LCK   
Sbjct: 261 MKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA +L   M +    P + ++NT+I G+ +  + + A S L++
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   D+ + ++ ++ +     +++   LF ++   G   +  +Y  LIH   +    
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L  T++     L+   Y+ VIDG C+ G+  +A + L+++  KG  P VVTY  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF 699



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  +  N H++   I    +   +D+A+          +  DV +Y+  I+      +
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGK 285

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A + F +M A G+  + VTY  +I    +      A+ L + ++++K       Y+ 
Sbjct: 286 VDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G    G++E+A   L++   KG +P VV+YN +++ L +KG + EA K   +MK K 
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK-KD 404

Query: 176 CFPDSTSFNTVI 187
             P+ +++N +I
Sbjct: 405 AIPNLSTYNIMI 416



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KK    ++  Y+ +I+ LC   +L+ A+ + D M   G+   ++T N ++    + Q  
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A ++ + L+      +   Y  +I+GL R GR +EA K  +Q+ +   +P  V Y  L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I    K G   +  K+  +M   GC PD    NT +       E ++  +  ++
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE 574



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFV-YSSLINGLCTFN 54
           +L ++    N + +   ++ + K  EI  A+      K   C   ++ YS LI+GLC   
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIR 773

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  +A   + +M  QG    + TY  +I    +      A  L +  +      +  +Y+
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYN 833

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
            +I+GL    R  +A +  ++   KG      T  +L++ L K   I +A
Sbjct: 834 AIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKGN---FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG+      YG  I+G+ KI  +D A         KGI L+V +YSSLI+G   
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  + ++++ +G+T  + T+N L+    + +    A+   Q+++  K   N   
Sbjct: 702 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS++I GLC++ ++ +A     ++ ++G  P V TY  +I+GL K G I+EAD L  + K
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EKG   DS  +N +I+G    N    A
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDA 848



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I I+G+ K      A +       +G  LD   Y+++I+G C   ++ +A 
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAY 639

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L ++M  +G    +VTY  +I D   K  R   A  L +  +    ELN+ +YS +IDG
Sbjct: 640 QLLEEMKTKGHEPTVVTYGSVI-DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             +VGR +EA   +++L +KGL P V T+N L++ L K   I EA      MK+  C P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             +++ +I G     + ++A  F ++
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQE 784



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I+ +CK  ++++A+         G+  +V   + +++ LC   RL +A  +F
Sbjct: 408 NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIF 467

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVI----- 117
           + +  +    + VTY  LI +   + GR      L     D  ++ N  VY+ +I     
Sbjct: 468 EGLDHKTCRPDAVTYCSLI-EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 118 ------------------------------DGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                                         D + + G  E+ R    ++   G +P   +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y ILI+GL K G   EA +L   MKE+GC  D+ ++NTVI GF    + ++A   L++
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E + KG   N  +Y   I+G  K+  ID A       ++KG+  +V+ ++ L++ L    
Sbjct: 679 EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+  F  M     T   +TY+ LIH   + +    A    Q +++  ++ N+  Y+
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GL + G   EA    ++  EKG V     YN +I GL       +A +L  + + K
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 175 GC 176
           GC
Sbjct: 859 GC 860



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I  +   R+ D  +       + G  ++V ++++LI       R+  A
Sbjct: 195 KFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAA 254

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  +  ++V YN  I D + K G+   A      ++ +   L+   Y+ +I 
Sbjct: 255 LSLLDEMKSNSLEPDVVLYNVCI-DCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIG 313

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R  EA +  + + +   VP    YN +I G    G   +A  LL + + KGC P
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              S+N ++     K + D A
Sbjct: 374 SVVSYNCILSCLGRKGQVDEA 394



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L T       + LF +M   G    +  +  LI   + ++GR  +A++LL  
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR-VFAREGRVDAALSLLDE 260

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ +  E ++ +Y++ ID   + G+ + A K   ++   GLV   VTY  +I  LCK   
Sbjct: 261 MKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA +L   M +    P + ++NT+I G+ +  + + A S L++
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  +  N H++   I    +   +D+A+          +  DV +Y+  I+      +
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGK 285

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A + F +M A G+  + VTY  +I    +      A+ L + ++++K       Y+ 
Sbjct: 286 VDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G    G++E+A   L++   KG +P VV+YN +++ L +KG + EA K   +MK K 
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK-KD 404

Query: 176 CFPDSTSFNTVI 187
             P+ +++N +I
Sbjct: 405 AIPNLSTYNIMI 416



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   D+ + ++ ++ +     +++   LF ++   G   +  +Y  LIH   +    
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L  T++     L+   Y+ VIDG C+ G+  +A + L+++  KG  P VVTY  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+GL K   + EA  L  + K KG   +   ++++I GF
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF 699



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KK    ++  Y+ +I+ LC   +L+ A+ + D M   G+   ++T N ++    + Q  
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A ++ + L+      +   Y  +I+GL R GR +EA K  +Q+ +   +P  V Y  L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I    K G   +  K+  +M   GC PD    NT +       E ++  +  ++
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE 574



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFV-YSSLINGLCTFN 54
           +L ++    N + +   ++ + K  EI  A+      K   C   ++ YS LI+GLC   
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIR 773

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  +A   + +M  QG    + TY  +I    +      A  L +  +      +  +Y+
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYN 833

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
            +I+GL    R  +A +  ++   KG      T  +L++ L K   I +A
Sbjct: 834 AIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  +NG+CK +++       D+ +  G   +  VY +L++G C    +  A E+F
Sbjct: 607 NVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVF 666

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G    + TY  LI D   K GR   AM +L  + +D    N+  Y+ ++DGLC+
Sbjct: 667 LRMTKCGYLPSVHTYTSLI-DRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+A   L  + +KG  P VVTY  LI+GL K G +    +L +QMK KGC P+  +
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVT 785

Query: 183 FNTVI 187
           +  +I
Sbjct: 786 YRILI 790



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   ++G CK+ EIDSA        K G    V  Y+SLI+ +    RL  A+++  +M
Sbjct: 645 VYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 704

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +       +VTY  ++ D   K G    A+ LL  +E+     N+  Y+ +IDGL + G+
Sbjct: 705 LKDSCNPNVVTYTAMV-DGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGK 763

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +   +   Q+  KG  P  VTY ILIN  C  G++ +A  LL +MK+         + T
Sbjct: 764 VDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRT 823

Query: 186 VIQGF 190
            +QGF
Sbjct: 824 TVQGF 828



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 16/182 (8%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG----------------ITAELVTYNPLI 82
           +   YS+LI+GLC    +++A E++ K++                   I+  +VTY  L+
Sbjct: 556 NAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALV 615

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           +   + Q    A  LL  +     E N  VY  ++DG C+VG  + A++   ++++ G +
Sbjct: 616 NGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYL 675

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V TY  LI+ + K G +  A K+L QM +  C P+  ++  ++ G     ET++A + 
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNL 735

Query: 203 LK 204
           L 
Sbjct: 736 LS 737



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 43/232 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK  E + A+       KKG   +V  Y++LI+GL    ++   +ELF
Sbjct: 712 NVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELF 771

Query: 64  DKMVAQGITAELVTYNPLIHD--------------------NWEK---------QG---R 91
            +M  +G     VTY  LI+                     +W K         QG   R
Sbjct: 772 MQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKR 831

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA---RKKLDQLSEKGLVPGVVT 147
           F +++ LL+ +E         VY ++ID   + GR E A    K++ ++S    +     
Sbjct: 832 FLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDM 891

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  LI  LC    + EA  L  +M+ +G  PD ++F  +++G + +N+ + A
Sbjct: 892 HTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEA 943



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 13/207 (6%)

Query: 12  FHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLING---------LCTFNRLKE 58
           + VY I I  +C   E+ +     + + +  ++ V S ++N          LC   + ++
Sbjct: 376 YVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEK 435

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++  +M+ +G   +  TY  +I    + +    A  L Q +++     ++  Y+++ID
Sbjct: 436 AFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILID 495

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G  E+A+   D++   G  P VVTY  L++   K   + +A+ +  +M    C+P
Sbjct: 496 SFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYP 555

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ +++ +I G     E  +A     K
Sbjct: 556 NAITYSALIDGLCKAGEIQKACEVYAK 582



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 99/262 (37%), Gaps = 58/262 (22%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C+ + +D A        K G+  DV+ Y+ LI+  C   
Sbjct: 442 EMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAG 501

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A   FD+M + G +  +VTY  L+H   + +  + A  +   +  D    N   YS
Sbjct: 502 LIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYS 561

Query: 115 LVIDGLCRVG-------------------------------------------------- 124
            +IDGLC+ G                                                  
Sbjct: 562 ALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKA 621

Query: 125 -RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  +A   LD +   G  P  + Y+ L++G CK G I  A ++ ++M + G  P   ++
Sbjct: 622 QKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTY 681

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            ++I         D A   L +
Sbjct: 682 TSLIDRMFKDGRLDLAMKVLSQ 703



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 42/226 (18%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY-- 78
           G CK R I+  + +G      +++SL++  C       A +LF++M   G     V Y  
Sbjct: 323 GWCK-RIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNI 381

Query: 79  ------------NPLIHDNWEK--------------------------QGRFS-AMALLQ 99
                       NP + D  EK                           G+F  A  +++
Sbjct: 382 FIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVK 441

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + R  +  +   Y+ VI  LC+  R ++A     ++ + G+ P V TY ILI+  CK G
Sbjct: 442 EMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAG 501

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +I +A     +M+  GC P+  ++  ++  +L   +  +A+    +
Sbjct: 502 LIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHR 547



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++L+  L +  +++ A  +  +M A G   +  T          K+GR+     L  L
Sbjct: 206 TYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQ-ALCKEGRWGDA--LDLL 262

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ER+ ++L+  + + +I GL     + EA   L ++     +P VVTY  L+ G  KK  +
Sbjct: 263 EREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQL 322

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
               +++  M  +GC P  + FN+++  +   N  D A ++
Sbjct: 323 GWCKRIINMMMTEGCNPSPSLFNSLVHTYC--NAEDYAYAY 361



 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 8/161 (4%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  L+V V    + GL       EA+E   ++   G     VTYN L+           A
Sbjct: 169 GRLLNVLVRRCCLQGL-----WGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMA 223

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + +    + ++          LC+ GRW +A   LD L  +      V    +I+G
Sbjct: 224 FRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA---LDLLEREDFKLDTVLCTQMISG 280

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           L +  +  EA   L +M+     P+  ++ T++ GFL K +
Sbjct: 281 LMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQ 321



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 53/121 (43%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD  + + +I+GL   +   EA+    +M        +VTY  L+    +K+       +
Sbjct: 269 LDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRI 328

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  +  +    +  +++ ++   C    +  A K  ++++  G  PG V YNI I  +C 
Sbjct: 329 INMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICG 388

Query: 158 K 158
           +
Sbjct: 389 R 389



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A  LL+ +  D  ++   + ++++   C  G W EA ++L +L + G  P  VTYN L+
Sbjct: 152 TAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALV 211

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L   G +  A ++  +M   G   D ++  +  Q  
Sbjct: 212 QVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQAL 249



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTL 101
           Y + + G     R   ++ L ++M +         Y  LI D++ K GR  +A+ L + +
Sbjct: 821 YRTTVQGFS--KRFLASLGLLEEMESHDTAPIAPVYGMLI-DSFSKAGRLETALELHKEM 877

Query: 102 ERDKYELNI---EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                 LN+   ++++ +I  LC   + EEA     ++  +G+VP +  +  L+ GL ++
Sbjct: 878 MEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIER 937

Query: 159 GMIMEADKLLVQMKEKG 175
               EA +L   + ++G
Sbjct: 938 NKWNEALQLCYGICQEG 954


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   ++G C+  ++ +A        K+G+  D   Y++LINGLC    LKEA  +  +M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  + VTY  LI D + K G+ +   L+   + + +   N+  Y+ + DGLC+ G 
Sbjct: 417 EDKGLDVDAVTYTVLI-DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + L ++  KGL   + TYN LINGLCK G + +A + ++ M E G  PD  ++ T
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I       E DRA S L++
Sbjct: 536 IIGALCQSKELDRAHSLLQE 555



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 10/199 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  ++R    +   Y   ING+C+  E+  A +       KG+ +D   Y+ LI+G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ EA  + +KMV + +T  +VTY  L  D   KQG   +A  LL  +     ELNI 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTAL-SDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC+ G  E+A + +  + E GL P V TY  +I  LC+   +  A  LL +M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            +KG  P   ++N ++ GF
Sbjct: 557 LDKGIKPTIVTYNVLMNGF 575



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 4/180 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y I +  +C    I  A +         DV  Y  +++G CT + L+ A++L  +M A+G
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +    V Y  +I    ++     A+ +++ +      L+  V++ V+ G CR G    AR
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              D++ ++GL    VTY  LINGLC+ G + EA+++L +M++KG   D+ ++  +I G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 42/198 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++R   N   Y    +G+CK  ++ +A         KG+ L++F Y+SLINGLC    
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A+     M   G+  ++ T                                   Y+ 
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYT-----------------------------------YTT 535

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LC+    + A   L ++ +KG+ P +VTYN+L+NG C  G +    +LL  M EK 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 176 CFPDSTSFNTVIQGFLVK 193
             P++T++N++++ + ++
Sbjct: 596 IHPNTTTYNSLMKQYCIE 613



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LCT  R+K+A +LFD+M +     ++VTY  ++H         +A+ LL  + 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               ELN   Y+ VI  LC  G+  +A + ++ +   G+V     +  +++G C+KG + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A     +M+++G   D  ++  +I G     E   A   L++
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+ E   K + + Y   I  +C+ +E+D A       + KGI   +  Y+ L+NG C  
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++    L + M+ + I     TYN L+     ++   S   + + +   +   N   Y
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C+    +EA     ++ EKG      +YN LI  L KK    EA +L  +M++
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698

Query: 174 KGCFPDSTSFNTVI 187
           +    +   +N  I
Sbjct: 699 ERLTAEPDVYNFYI 712



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L Q L     E N   Y++++  LC  GR ++A +  D+++     P VVTY I+++
Sbjct: 241 AVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVH 293

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G C    +  A KLL +M  +G   +  ++ +VI
Sbjct: 294 GYCTLSELETAIKLLSEMAARGLELNPVAYTSVI 327



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K     Y + +NG C    ++         ++K I  +   Y+SL+   C   
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K   E++  M++Q +     TYN LI  + + +    A+     +    + L    Y+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +I  L +  ++ EAR+  +++ ++ L      YN  I+
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N + Y I I G CK R +  A       I+KG  L    Y++LI  L    +
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA  LF+KM  + +TAE   YN  I  ++ +    S +AL   L
Sbjct: 686 FTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCR+   +EA +   +L EK       +YNIL+  LC  G I +A +L  +M      PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PD 284

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  ++ G+   +E + A   L +
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSE 310



 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 45/105 (42%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ LI G C    +KEA+    +M+ +G      +YN LI    +K+    A  L + +
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +++     +VY+  ID        E      D+L E  LV  + 
Sbjct: 697 RKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTLVKSIA 741


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           N  ++ + + G  K+ E D  IK     GI  D   Y+ LING C     K+A  L D+M
Sbjct: 380 NLLIHALFLEG--KMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +++GI   LVTY  LI+   ++    +A  L + + R+    ++ +++ +IDG C  G  
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L ++ ++ +VP  VTYN L+ G C++G + EA +LL +MK +G  PD  S+NT+
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTL 557

Query: 187 IQGFLVKNETDRA 199
           I G+  + + + A
Sbjct: 558 ISGYSKRGDINDA 570



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING C+           D  I KGI   +  Y+SLI  L   NR+K A +LF+K+
Sbjct: 413 TYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKI 472

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G + +L+ +N LI  +        A ALL+ +++     +   Y+ ++ G CR G+ 
Sbjct: 473 IREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKV 532

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR+ L ++  +G+ P  ++YN LI+G  K+G I +A  +  +M   G  P   ++N +
Sbjct: 533 EEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNAL 592

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     + D A   LK+
Sbjct: 593 IQGLCKNQQGDLAEELLKE 611



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALL 98
           V+ ++ +IN LC   +LK+A +    M   G+   +VTYN +IH  +  +GR   A  +L
Sbjct: 236 VYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIH-GYCSRGRVEGARMVL 294

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             ++    E +   Y  +I G+C+ G+ EEA   L+++ E GL+P  VTYN LI+G C K
Sbjct: 295 DIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNK 354

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G +++A     +M  +   P  +++N +I    ++ + D A   +K
Sbjct: 355 GDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIK 400



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G C    ++ A         +G+  D + Y SLI+G+C   +L+EA  
Sbjct: 268 KPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASG 327

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +KM   G+    VTYN LI     K     A      + R      +  Y+L+I  L 
Sbjct: 328 ILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALF 387

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   +  + + G+VP  +TYNILING C+ G   +A  L  +M  KG  P   
Sbjct: 388 LEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLV 447

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++ ++I     +N    A    +K
Sbjct: 448 TYTSLIYVLSKRNRMKAADDLFEK 471



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+ + I   C+++  D A +       KG+   +  ++++++     N+ +    L+ +M
Sbjct: 168 VFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEM 227

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I + + T+N +I +   K+G+   A   + ++E    + N+  Y+ VI G C  GR
Sbjct: 228 FRLKIKSTVYTFNIMI-NVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E AR  LD +  +G+ P   TY  LI+G+CK G + EA  +L +MKE G  P + ++NT
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 186 VIQGFLVKNETDRASSF 202
           +I G+  K +  +A  +
Sbjct: 347 LIDGYCNKGDLVKAFGY 363



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 86/165 (52%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
            V+  LI   C   R  +A E FD M  +G+  ++ T+N ++    +     +   L   
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           + R K +  +  ++++I+ LC+ G+ ++A+  +  +   G+ P VVTYN +I+G C +G 
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  A  +L  MK +G  PDS ++ ++I G     + + AS  L+K
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEK 331


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+ +CK  ++  A+        KG   D+F ++SLI GLC  N+ +EA+ L+  M+
Sbjct: 87  YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 146

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+ A  +TYN LIH    +     A+ L+  +      L+   Y+ +I  LCR G  E
Sbjct: 147 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 206

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +     + +  KGL P  ++ NILINGLC+ G I  A + L  M  +G  PD  ++N++I
Sbjct: 207 KGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 266

Query: 188 QGFLVKNETDRASSFLKK 205
            G         A +   K
Sbjct: 267 NGLCKTGRAQEALNLFDK 284



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + + M++ G   ++ TYN LI    +K    SA  L+  ++    E N+  Y+++ID  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR EEAR  LD++S KGL    V YN LI+ LCK   + +A  +   M  KGC PD  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 182 SFNTVIQGFLVKNETDRA 199
           +FN++I G    N+ + A
Sbjct: 121 TFNSLIFGLCKVNKFEEA 138



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 89/167 (53%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++  + +G  LD   Y+ LI  LC    +++ + LF+ M+++G+    ++ N LI+ 
Sbjct: 174 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 233

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A+  L+ +       +I  Y+ +I+GLC+ GR +EA    D+L  +G+ P 
Sbjct: 234 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 293

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +TYN LI+  CK+GM  +A  LL +  + G  P+  ++  ++  F+
Sbjct: 294 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFI 340



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +S +  G   D+F Y++LI GLC    L  A EL ++M  +G    ++TY  LI D + K
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILI-DRFCK 61

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A  +L  +      LN   Y+ +I  LC+  + ++A      +S KG  P + T
Sbjct: 62  EGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT 121

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI GLCK     EA  L   M  +G   ++ ++NT+I  FL +     A
Sbjct: 122 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 173



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P + TYN LI GLCKKG ++ A +L+ +M+ KGC P+  ++  +I  F  +   + A
Sbjct: 9   GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68

Query: 200 SSFLKK 205
            + L +
Sbjct: 69  RNVLDE 74


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 15  YGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           YG  + G+C+ R+ D A   + +   ++V + +++I G  T  +L  A EL++ M ++G 
Sbjct: 285 YGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGC 344

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++ TY+ L+H    K GRF SA+ +L  +E      NI  YS ++   CR G W++AR
Sbjct: 345 PPDVHTYSILMH-GLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDAR 403

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             LDQ+  KG       YN +I  LCK G + +A +L+ +MK +GC PD  ++NT+I
Sbjct: 404 AMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMI 460



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +  G   DV  ++ L+ GLC   R++EA  L D+M+ QG    +VTY  L+     
Sbjct: 235 LDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCR 294

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A A+L  L     E+N+ + + VI G    G+   A +  + +  KG  P V T
Sbjct: 295 TRQADEACAMLGRLP----EVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHT 350

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y+IL++GLCK G    A ++L +M+EKGC P+  +++T++  F      D A + L +
Sbjct: 351 YSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 83/158 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   DV  YS L++GLC   R   AV + D+M  +G    +VTY+ L+H          
Sbjct: 342 KGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDD 401

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A A+L  +    + +N + Y+ +I  LC+ G+ ++A + + ++  +G  P + TYN +I 
Sbjct: 402 ARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIY 461

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            LC   ++ EA+ +   + E+G   +  ++NT+I   L
Sbjct: 462 HLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALL 499



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 42/240 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y   I  +CK  ++D A +       +G   D+  Y+++I  LC  + ++EA 
Sbjct: 414 FSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAE 473

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSA--------------------- 94
            +F  ++ +G+ A  +TYN LIH       W++  R ++                     
Sbjct: 474 HIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKAL 533

Query: 95  ---------MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                    MALL+ +     + N   Y+++I+ LC+ G+  +A +   ++  +GL P +
Sbjct: 534 CKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDI 593

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN LINGLCK G    A  LL ++  +   PD  ++N +I         D A+  L K
Sbjct: 594 VTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDK 653



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ++G+CK+    SA++       KG   ++  YS+L++  C      +A  + 
Sbjct: 347 DVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAML 406

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+A+G +     YN +I+   +      A  L+Q ++    + +I  Y+ +I  LC  
Sbjct: 407 DQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNN 466

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              EEA      L E+G+V   +TYN LI+ L + G   E  +L  +M   GC  D  S+
Sbjct: 467 DLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISY 526

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I+    +   DR+ + L++
Sbjct: 527 NGLIKALCKEGNVDRSMALLEE 548



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  LDV  Y+ LI  LC    +  ++ L ++MV +GI     +YN LI++  +      A
Sbjct: 518 GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDA 577

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L + +       +I  Y+ +I+GLC+VG    A   L++L  + + P +VTYNILI+ 
Sbjct: 578 LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISW 637

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            CK  ++ +A  LL +    G  P+  ++  ++Q F+
Sbjct: 638 HCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFV 674



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 80/160 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  + KG  ++   Y+ +I  LC   +L +A  L  +M +QG   ++ TYN +I+    
Sbjct: 406 LDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCN 465

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  + + L  +    N   Y+ +I  L R GRW+E  +   ++   G    V++
Sbjct: 466 NDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVIS 525

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           YN LI  LCK+G +  +  LL +M  KG  P++ S+N +I
Sbjct: 526 YNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLI 565



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F +      LC   R  +A+ L   M   G   + V Y  +IH    + G   A  LL  
Sbjct: 178 FTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDE 237

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  ++ ++ GLC +GR  EA + +D++  +G +P VVTY  L+ GLC+   
Sbjct: 238 MLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQ 297

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             EA  +L ++ E     +    NTVI+G L + +  RA+  
Sbjct: 298 ADEACAMLGRLPEV----NVVMLNTVIRGCLTEGKLARATEL 335



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 56/112 (50%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL+ + R     +  +Y  VI  L   G   EA   LD++   G    V T+N L+ 
Sbjct: 196 ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVL 255

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC  G + EA +L+ +M  +GC P   ++  ++QG     + D A + L +
Sbjct: 256 GLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGR 307



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           A+ L D+M  +  ++    +YN ++           A+ L + + RD+       + +  
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 184

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LCR+GR  +A   L  ++  G VP  V Y  +I+ L  +G + EA  LL +M   GC 
Sbjct: 185 RALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCA 244

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            D  +FN ++ G         A+  + + M
Sbjct: 245 ADVNTFNDLVLGLCGLGRVREAARLVDRMM 274


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ING+C++  I+          +KG   D   Y++L+NG C      +A+ L 
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLH 331

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+  G+  ++VTY  LI+   +      AM     +       N   Y+ +I+G  + 
Sbjct: 332 SEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK 391

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA +  D++   G  P +VTYN L+NG C  G + EA  LL  M+ KG  PD  S+
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSY 451

Query: 184 NTVIQGFLVKNETDRA 199
           +T+I GF    E DRA
Sbjct: 452 STIIAGFCRYQELDRA 467



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK+     A+       + G+  DV  Y+SLIN +C    L  A+E FD+M
Sbjct: 310 TYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM 369

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTY  LI+   +K     A  +   + R  +   I  Y+ +++G C  GR 
Sbjct: 370 HVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRM 429

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA   L  +  KGL P VV+Y+ +I G C+   +  A ++  +M EKG  PD+ +++++
Sbjct: 430 EEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSL 489

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG   +   + A    ++
Sbjct: 490 IQGLCEQRRLNEACDLFQE 508



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++   R   N   Y   I   CK++ ID A K       +G+  ++  Y+ +INGLC   
Sbjct: 228 EMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG 287

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R++E   +  +M  +G   + VTYN L+ + + K G F  A+ L   + R+    ++  Y
Sbjct: 288 RIEETSGVLAEMDRKGFAPDGVTYNTLV-NGYCKVGNFHQALVLHSEMLRNGLPPDVVTY 346

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+ +C+ G    A +  DQ+  +GL P  VTY  LING  +KG + EA ++  +M  
Sbjct: 347 TSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIR 406

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            G  P   ++N ++ G  V    + A   L+
Sbjct: 407 SGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN MCK   ++ A++       +G+  +   Y+SLING      + EA  ++D+M
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G    +VTYN L++ +        A+ LL+ +E      ++  YS +I G CR    
Sbjct: 405 IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQEL 464

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +   ++ EKG+ P  +TY+ LI GLC++  + EA  L  +M  K   PD  ++ ++
Sbjct: 465 DRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSL 524

Query: 187 IQGFLVKNETDRA 199
           I G+  + + + A
Sbjct: 525 INGYCKEGDLNEA 537



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G C+ +E+D A       ++KG+  D   YSSLI GLC   RL EA +LF +M+
Sbjct: 451 YSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEML 510

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + +  +  TY  LI + + K+G  + A+ L   + +  +  +   Y+++I+GL +  R 
Sbjct: 511 NKSLLPDEFTYTSLI-NGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQART 569

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKGMIMEADKLLVQM 171
            EA++ L +L     +P  +TY+ LI                G C KG++ EAD++   M
Sbjct: 570 REAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++   P+   +N +I G        +A    K+
Sbjct: 630 IKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKE 663



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 7/167 (4%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV----ELFDKMVAQGITAELVTYNPLIH 83
           +D A   G    V  Y+++++ +    R ++ V    +++ +M+A G++  + +YN LI 
Sbjct: 155 VDLAKLNGFMPGVLSYNAILDSIV---RCRKPVIFAEKVYREMIASGVSLNVFSYNILIR 211

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                      +   + +ER++   N+  Y+ VI   C++ R +EA K L  +  +GL P
Sbjct: 212 GFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEP 271

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            ++TYN++INGLC+ G I E   +L +M  KG  PD  ++NT++ G+
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGY 318



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 24/212 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I G+C+ R ++ A       + K +  D F Y+SLING C   
Sbjct: 473 EMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELN---- 109
            L EA+ L D+M+ +G   + VTYN LI +   KQ R   A  LL  L  D+   N    
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLI-NGLNKQARTREAKRLLLKLFYDESIPNGITY 591

Query: 110 ---------IEVYSLV--IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                    IE  S+V  I G C  G   EA +  + + ++   P    YN++I+G C+ 
Sbjct: 592 DTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRD 651

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + +A KL  +M + G  P + +   +++  
Sbjct: 652 GNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQT 100
           V+  ++      N +++A+ + D     G    +++YN ++      ++    A  + + 
Sbjct: 134 VFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYRE 193

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +      LN+  Y+++I G C  G  E   +  +++     +P VVTYN +I   CK   
Sbjct: 194 MIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKR 253

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I EA KLL  M  +G  P+  ++N VI G 
Sbjct: 254 IDEAFKLLRSMGLEGLEPNLLTYNMVINGL 283



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 113 YSLVIDGLCRVGRWEE-ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           Y+ ++D + R  +    A K   ++   G+   V +YNILI G C  G +    +   +M
Sbjct: 170 YNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEM 229

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   C P+  ++NTVI  +      D A   L+ 
Sbjct: 230 ERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRS 263



 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL--CKKGMIMEADKLLV 169
           V+ LV+     +   E+A   +D     G +PGV++YN +++ +  C+K +I  A+K+  
Sbjct: 134 VFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIF-AEKVYR 192

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +M   G   +  S+N +I+GF      +    F ++
Sbjct: 193 EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEE 228


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   ++G C+  ++ +A        K+G+  D   Y++LINGLC    LKEA  +  +M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  + VTY  LI D + K G+ +   L+   + + +   N+  Y+ + DGLC+ G 
Sbjct: 417 EDKGLDVDAVTYTVLI-DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + L ++  KGL   + TYN LINGLCK G + +A + ++ M E G  PD  ++ T
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I       E DRA S L++
Sbjct: 536 IIGALCQSKELDRAHSLLQE 555



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 10/199 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  ++R    +   Y   ING+C+  E+  A +       KG+ +D   Y+ LI+G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ EA  + +KMV + +T  +VTY  L  D   KQG   +A  LL  +     ELNI 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTAL-SDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC+ G  E+A + +  + E GL P V TY  +I  LC+   +  A  LL +M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            +KG  P   ++N ++ GF
Sbjct: 557 LDKGIKPTIVTYNVLMNGF 575



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 4/180 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y I +  +C    I  A +         DV  Y  +++G CT + L+ A++L  +M A+G
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +    V Y  +I    ++     A+ +++ +      L+  V++ V+ G CR G    AR
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              D++ ++GL    VTY  LINGLC+ G + EA+++L +M++KG   D+ ++  +I G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 42/198 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++R   N   Y    +G+CK  ++ +A         KG+ L++F Y+SLINGLC    
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A+     M   G+  ++ T                                   Y+ 
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYT-----------------------------------YTT 535

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LC+    + A   L ++ +KG+ P +VTYN+L+NG C  G +    +LL  M EK 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 176 CFPDSTSFNTVIQGFLVK 193
             P++T++N++++ + ++
Sbjct: 596 IHPNTTTYNSLMKQYCIE 613



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LCT  R+K+A +LFD+M +     ++VTY  ++H         +A+ LL  + 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               ELN   Y+ VI  LC  G+  +A + ++ +   G+V     +  +++G C+KG + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A     +M+++G   D  ++  +I G     E   A   L++
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+ E   K + + Y   I  +C+ +E+D A       + KGI   +  Y+ L+NG C  
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++    L + M+ + I     TYN L+     ++   S   + + +   +   N   Y
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C+    +EA     ++ EKG      +YN LI  L KK    EA +L  +M++
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698

Query: 174 KGCFPDSTSFNTVI 187
           +    +   +N  I
Sbjct: 699 ERLTAEPDVYNFYI 712



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L Q L     E N   Y++++  LC  GR ++A +  D+++     P VVTY I+++
Sbjct: 241 AVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVH 293

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G C    +  A KLL +M  +G   +  ++ +VI
Sbjct: 294 GYCTLSELETAIKLLSEMAARGLELNPVAYTSVI 327



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K     Y + +NG C         R ++  ++K I  +   Y+SL+   C   
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K   E++  M++Q +     TYN LI  + + +    A+     +    + L    Y+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +I  L +  ++ EAR+  +++ ++ L      YN  I+
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N + Y I I G CK R +  A       I+KG  L    Y++LI  L    +
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA  LF+KM  + +TAE   YN  I  ++ +    S +AL   L
Sbjct: 686 FTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCR+   +EA +   +L EK       +YNIL+  LC  G I +A +L  +M      PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PD 284

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  ++ G+   +E + A   L +
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSE 310



 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 45/105 (42%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ LI G C    +KEA+    +M+ +G      +YN LI    +K+    A  L + +
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +++     +VY+  ID        E      D+L E  LV  + 
Sbjct: 697 RKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTLVKSIA 741


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   ++G C+  ++ +A        K+G+  D   Y++LINGLC    LKEA  +  +M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  + VTY  LI D + K G+ +   L+   + + +   N+  Y+ + DGLC+ G 
Sbjct: 417 EDKGLDVDAVTYTVLI-DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + L ++  KGL   + TYN LINGLCK G + +A + ++ M E G  PD  ++ T
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I       E DRA S L++
Sbjct: 536 IIGALCQSKELDRAHSLLQE 555



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 10/199 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  ++R    +   Y   ING+C+  E+  A +       KG+ +D   Y+ LI+G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ EA  + +KMV + +T  +VTY  L  D   KQG   +A  LL  +     ELNI 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTAL-SDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC+ G  E+A + +  + E GL P V TY  +I  LC+   +  A  LL +M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            +KG  P   ++N ++ GF
Sbjct: 557 LDKGIKPTIVTYNVLMNGF 575



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 4/180 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y I +  +C    I  A +         DV  Y  +++G CT + L+ A++L  +M A+G
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +    V Y  +I    ++     A+ +++ +      L+  V++ V+ G CR G    AR
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              D++ ++GL    VTY  LINGLC+ G + EA+++L +M++KG   D+ ++  +I G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 42/198 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++R   N   Y    +G+CK  ++ +A         KG+ L++F Y+SLINGLC    
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A+     M   G+  ++ T                                   Y+ 
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYT-----------------------------------YTT 535

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LC+    + A   L ++ +KG+ P +VTYN+L+NG C  G +    +LL  M EK 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 176 CFPDSTSFNTVIQGFLVK 193
             P++T++N++++ + ++
Sbjct: 596 IHPNTTTYNSLMKQYCIE 613



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LCT  R+K+A +LFD+M +     ++VTY  ++H         +A+ LL  + 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               ELN   Y+ VI  LC  G+  +A + ++ +   G+V     +  +++G C+KG + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A     +M+++G   D  ++  +I G     E   A   L++
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 7/194 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+ E   K + + Y   I  +C+ +E+D A       + KGI   +  Y+ L+NG C  
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++    L + M+ + I     TYN L+     ++   S   + + +   +   N   Y
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C+    +EA     ++ EKG      +YN LI  L KK    EA +L  +M++
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698

Query: 174 KGCFPDSTSFNTVI 187
                +   +N  I
Sbjct: 699 DRLTAEPDVYNFYI 712



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L Q L     E N   Y++++  LC  GR ++A +  D+++     P VVTY I+++
Sbjct: 241 AVQLFQELP----EKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVH 293

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G C    +  A KLL +M  +G   +  ++ +VI
Sbjct: 294 GYCTLSELETAIKLLSEMAARGLELNPVAYTSVI 327



 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K     Y + +NG C         R ++  ++K I  +   Y+SL+   C   
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K   E++  M++Q +     TYN LI  + + +    A+     +    + L    Y+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +I  L +  ++ EAR+  +++ +  L      YN  I+
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYID 713



 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N + Y I I G CK R +  A       I+KG  L    Y++LI  L    +
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             EA  LF+KM    +TAE   YN  I  ++ +    S +AL   L
Sbjct: 686 FTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCR+   +EA +   +L EK       +YNIL+  LC  G I +A +L  +M      PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PD 284

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  ++ G+   +E + A   L +
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSE 310



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ LI G C    +KEA+    +M+ +G      +YN LI    +K+    A  L + +
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +D+     +VY+  ID        E      D+L E  LV  + 
Sbjct: 697 RKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTLVKSIA 741


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 9/195 (4%)

Query: 14  VYGIRINGMCK---IREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C+   + E+    D   K G   + +V +++ING    ++L++A+  F  M
Sbjct: 406 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNM 465

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G    +VTYN LI +   K  RFS A AL++ + +  ++ N+  YSL+++GLC+  +
Sbjct: 466 VSKGCFPTVVTYNTLI-NGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKK 524

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A     Q  EKG  P V  +NI+I+GLC  G + +A +L  +MK++ C P+  + NT
Sbjct: 525 LDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNT 584

Query: 186 VIQGFLVKNETDRAS 200
           +++GF    + +RAS
Sbjct: 585 LMEGFYKVRDFERAS 599



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I   C+ ++ D A +       +G   DVF Y +LIN L     + +A++LF
Sbjct: 123 NLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLF 182

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYSLVIDGLCR 122
           D+M  +G+T ++  YN LI   ++K    +A  + + L +      NI  Y+++I+GLC+
Sbjct: 183 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 242

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+++E+ +   ++ +      + TY+ LI+GLC  G +  A ++  +M E G  PD   
Sbjct: 243 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 302

Query: 183 FNTVIQGFL 191
           +NT++ G+L
Sbjct: 303 YNTMLNGYL 311



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E     +  VY   +NG  +   I+  ++      K  C  V  Y+ LI GL    +
Sbjct: 290 EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAK 349

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+ +++ +  +   A+ +TY  L+H   +      A+++L+  E  + +L+   YS 
Sbjct: 350 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 409

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLCR GR +E    LDQ+++ G  P     N +ING  +   + +A +    M  KG
Sbjct: 410 MINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKG 469

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           CFP   ++NT+I G         A + +K+
Sbjct: 470 CFPTVVTYNTLINGLSKAERFSEAYALVKE 499



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 13/211 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T+   K N +V    ING  +  +++ A++       KG    V  Y++LINGL    R
Sbjct: 430 MTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAER 489

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL---LQTLERDKYELNIEV 112
             EA  L  +M+ +G    ++TY+ L+  N   QG+   MAL    Q LE+  ++ ++++
Sbjct: 490 FSEAYALVKEMLQKGWKPNMITYSLLM--NGLCQGKKLDMALNLWCQALEKG-FKPDVKM 546

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++I GLC  G+ E+A +   ++ ++  VP +VT+N L+ G  K      A K+   + 
Sbjct: 547 HNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 606

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + G  PD  S+N  ++G    +    A  FL
Sbjct: 607 QYGLQPDIISYNITLKGLCSCHRISDAVGFL 637



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 42/198 (21%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++ +K N   Y + +NG+C+ +++D        A++KG   DV +++ +I+GLC+  
Sbjct: 499 EMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 558

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A++L+ +M  +     LVT+N L                                 
Sbjct: 559 KVEDALQLYSEMKQRNCVPNLVTHNTL--------------------------------- 585

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             ++G  +V  +E A K  D + + GL P +++YNI + GLC    I +A   L    ++
Sbjct: 586 --MEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDR 643

Query: 175 GCFPDSTSFNTVIQGFLV 192
           G  P + ++N ++QG+L 
Sbjct: 644 GVLPTAITWNILVQGYLA 661



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+SL+N L   N+  EA   F      G++  L TYN LI  +  K+    A  LL  + 
Sbjct: 92  YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 151

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              +  ++  Y  +I+ L + G   +A K  D++ E+G+ P V  YNILI+G  KKG I+
Sbjct: 152 GQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 211

Query: 163 EADKLLVQ-MKEKGCFPDSTSFNTVIQGF 190
            A ++  + +K    +P+  S+N +I G 
Sbjct: 212 NASEIWERLLKGPSVYPNIPSYNVMINGL 240



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  Y+ +++ L    +W+EA          GL P + TYNILI   C+K    +A +LL 
Sbjct: 89  IRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLN 148

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKN 194
            M  +G  PD  S+ T+I   L KN
Sbjct: 149 WMWGQGFSPDVFSYGTLINS-LAKN 172


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 12/202 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCT-FNRLKEAVEL 62
           N   +   I G CK   ++ AIK        G    +  Y++LI+ LC     +  AV+L
Sbjct: 277 NAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDL 336

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F+K+   G+T  +VTYN LI    + +    AM     +E  K   N+  YS++IDGLC+
Sbjct: 337 FNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME-GKCAPNVITYSILIDGLCK 395

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V R +EA K L+ +   G  P VVTY  LING CK G +  A     +MK  GC P++  
Sbjct: 396 VRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVI 455

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           FNT+I G     + +RA+  L+
Sbjct: 456 FNTLIDGLC---KAERANDGLR 474



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 11/197 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-----KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y   I G C  R +  A++     +G C  +V  YS LI+GLC   R+KEA +  + M 
Sbjct: 351 TYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMK 410

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           A G T  +VTY  LI + + K G   SA+   + ++      N  +++ +IDGLC+  R 
Sbjct: 411 AHGYTPTVVTYGGLI-NGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERA 469

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +  + L  +  +G  P V+TYN LI+GLC    + +A +L   M    C P+ T+FN +
Sbjct: 470 NDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFL 526

Query: 187 IQGFLVKNETDRASSFL 203
           I+G   + + + A + L
Sbjct: 527 IRGLCAQKKVEEARNIL 543



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N   Y I IN  CK+ +++ A       I+     +   +++LI G C    L++A+
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDG 119
           +LF +M   G  A +VTYN LI    +K+G  ++A+ L   LE       I  Y+ +I G
Sbjct: 299 KLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQG 358

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C   R  EA +  D++  K   P V+TY+ILI+GLCK   + EA K L  MK  G  P 
Sbjct: 359 FCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPT 417

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++  +I GF    E   A  F +K
Sbjct: 418 VVTYGGLINGFCKCGELKSALLFFEK 443



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-F 92
            G+  D+  Y  L++ L    R+ EA  LF  M     + +++TYN L+ D + K G+ +
Sbjct: 170 SGVEPDLESYHILLSALSDSGRMAEAHALFSAMTC---SPDIMTYNVLM-DGYCKIGQTY 225

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A +L++ + +  YE N+  YS++I+  C++ + EEA +   ++ E   VP  VT+N LI
Sbjct: 226 EAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLI 285

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
            G CK GM+ +A KL  +M++ GC     ++NT+I     K
Sbjct: 286 AGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 326



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N H Y + I G CK  ++  A+         G+  +    ++L+ GLC   ++  A+
Sbjct: 28  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF +M A        ++N L+   +       A+A LQ + +    +    Y+LV+ GL
Sbjct: 88  KLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 121 C----RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           C       R E+A +   ++   G+ P + +Y+IL++ L   G + EA  L   M    C
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---C 204

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            PD  ++N ++ G+    +T  A S +K+
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKE 233



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+    +      YG  ING CK  E+ SA+         G   +  ++++LI+GLC   
Sbjct: 408 DMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAE 467

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW------EKQGRFSAMALLQTLERDKYEL 108
           R  + + L   M A+G   +++TYN LI          + Q  F  MA            
Sbjct: 468 RANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAP--------- 518

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLD 134
           N+  ++ +I GLC   + EEAR  LD
Sbjct: 519 NVTTFNFLIRGLCAQKKVEEARNILD 544



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L + +    +  N   Y+++I G C+ G+  +A      +   GL+P   T N L+ 
Sbjct: 16  ALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLL 75

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GLC+ G +  A KL  +M+     P S S N +++GF +      A + L+
Sbjct: 76  GLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQ 126



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 19  INGMCKIREIDSAIK--KGICLDVFV-----YSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+   R+ D A++  K +   +F      Y+ LI G C   ++ +AV +F  M + G+
Sbjct: 4   LSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGL 63

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
                T N L+    E     SA+ L + ++   +      +++++ G    GR  +A  
Sbjct: 64  LPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALA 123

Query: 132 KLDQLSEKGLVPGVVTYNILINGLC----KKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            L  + +        TYN+++ GLC        + +A +   +MK  G  PD  S++ ++
Sbjct: 124 HLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILL 183

Query: 188 QGF 190
              
Sbjct: 184 SAL 186



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L++GL +  +  +A+ LF +++A        TYN LI    +      A+++   ++ 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                N    + ++ GLC +G+   A K   ++     +P   ++NIL+ G    G + +
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET----DRASSFLKK 205
           A   L  M++      + ++N V++G   +N++    ++A  F K+
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKE 166


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 96/173 (55%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+G+  D++ Y+ +INGLC    + +A  L +  +A+G   ++ T+N LI    ++    
Sbjct: 391 KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMD 450

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ +L ++       ++  Y+ +++GLC+  + E+  +    + EKG +P ++TYNILI
Sbjct: 451 NAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILI 510

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LCK   + EA  LL +++ +G  PD  SF TVI GF    + D A    ++
Sbjct: 511 ESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRR 563



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 43/249 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D++++    +   Y + ING+CK+         +++AI KG   D+F +++LI+G C   
Sbjct: 388 DMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRL 447

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A+ + D M + G+T +++TYN +++   +       M   + +       NI  Y+
Sbjct: 448 KMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYN 507

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME----------- 163
           ++I+ LC+  +  EA   L+++  +GL+P  V++  +I+G C  G + E           
Sbjct: 508 ILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQ 567

Query: 164 -------------------------ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                                    A KL  +M +KGC PDS ++  +I GF      + 
Sbjct: 568 YRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNS 627

Query: 199 ASSFLKKNM 207
              FL K +
Sbjct: 628 GYDFLLKEI 636



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G  K+ +I  A +       KG   D F Y SLI G+C    +  A+ LF++ +
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   +V YN LI    ++     A+ L+  + ++    +I  Y+LVI+GLC++G   
Sbjct: 356 GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVS 415

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   L+    KG +P + T+N LI+G CK+  +  A  +L  M   G  PD  ++N+++
Sbjct: 416 DANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSIL 475

Query: 188 QGF 190
            G 
Sbjct: 476 NGL 478



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + IRI   C+ +   +A++       +G  L+  VY ++I+G    N   EA ELF+KM+
Sbjct: 149 FTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKML 208

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI   + T+N L+H   +K        LL  + ++    N+  +++ I GLCR G  E
Sbjct: 209 RLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLE 268

Query: 128 -------EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
                  EA   L ++  KGL P   TYN +I G  K G I +A ++L   K KG  PD 
Sbjct: 269 GANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDE 328

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            ++ ++I G     + D A +  ++ +
Sbjct: 329 FTYCSLIIGVCQDGDIDHALALFEEAL 355



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI  DV  ++  I   C   R   A+ L + M +QG     V Y  +I   +E+  +  
Sbjct: 140 EGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVE 199

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L   + R     +I  ++ ++  LC+ G  +E  K L+++ + G+ P + T+NI I 
Sbjct: 200 AYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQ 259

Query: 154 GLCKKGM-------IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GLC+KG+       ++EA+  L +M  KG  PD  ++NT+I G+    +   AS  LK
Sbjct: 260 GLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 14/207 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA--------------IKKGICLDVFVYSSLINGLCTFNRL 56
           N   + I I G+C+   ++ A              + KG+  D F Y+++I G     ++
Sbjct: 250 NLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKI 309

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           ++A  +      +G   +  TY  LI    +      A+AL +       + +I +Y+ +
Sbjct: 310 QDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTL 369

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I GL + G   +A + ++ +S++G+ P + TYN++INGLCK G + +A+ LL     KG 
Sbjct: 370 IKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGY 429

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  +FNT+I G+  + + D A   L
Sbjct: 430 LPDIFTFNTLIDGYCKRLKMDNAIGIL 456



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +F Y++++N L  +    +A +++ +M  +GI  ++ T+   I      +   +A+ LL 
Sbjct: 111 IFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLN 170

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +     ELN  VY  VI G        EA +  +++   G+ P + T+N L++ LCKKG
Sbjct: 171 NMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKG 230

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            + E +KLL ++ + G  P+  +FN  IQG   K   + A+S
Sbjct: 231 HLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANS 272



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 43/224 (19%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++D+AI         G+  DV  Y+S++NGLC   + ++ +E F  ++ +G 
Sbjct: 440 IDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGC 499

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-- 129
              ++TYN LI    + +    A+ LL+ +       +   +  VI G C  G  +EA  
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQ 559

Query: 130 -------------------------RKKLD---------QLSEKGLVPGVVTYNILINGL 155
                                     +KLD         ++ +KG  P   TY ++I+G 
Sbjct: 560 LFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGF 619

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           CK G +      L++  E G  P  T+F  VI    V++    A
Sbjct: 620 CKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEA 663



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I  +CK R++  A+        +G+  D   + ++I+G C    L EA +LF
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLF 561

Query: 64  DKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  Q  I   + TYN +I+   EK     A  L   +     + +   Y ++IDG C+
Sbjct: 562 RRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCK 621

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           VG        L +  E G VP + T+  +IN LC +  + EA  ++  M   G  P++ 
Sbjct: 622 VGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAV 680



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 1/122 (0%)

Query: 85  NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           N+ ++G+   A+ + + ++    E +I  Y+ +++ L   G + +A K   ++  +G+ P
Sbjct: 85  NYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAP 144

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V T+ I I   C+    + A +LL  M  +GC  ++  + TVI GF  +N    A    
Sbjct: 145 DVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELF 204

Query: 204 KK 205
            K
Sbjct: 205 NK 206



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +A+ +F+ +  + G     +TY  +I +     G F AM      ER   E+ + V + +
Sbjct: 22  KALSIFNSVKKEDGFKHTFLTYKRMI-EKLGFHGEFDAM------ERVLMEMRLNVDNSL 74

Query: 117 IDGLC--------RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++G+         R G+ +EA    +++      P + +YN ++N L + G   +A K+ 
Sbjct: 75  LEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVY 134

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
           ++MK +G  PD  +F   I+ F
Sbjct: 135 LRMKHEGIAPDVCTFTIRIKSF 156



 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+G CK+  ++S        I+ G    +  +  +IN LC  +R+ EAV +   
Sbjct: 610 YTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHL 669

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           MV  G+  E V     I D  +K+   +   +++ L + K  +    Y L+ DG+
Sbjct: 670 MVRTGVVPEAVV---TIFD-ADKKAVAAPKIIVEDLLK-KSHITYYAYELLYDGI 719


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK+ +  SA+           I  +V +YS++I+GLC   R  ++  LF +
Sbjct: 219 TYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIE 278

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI   +VTYN +I   +   GR+SA   LLQ +   K   N+  Y+ +I+   + G
Sbjct: 279 MQDKGIFPNIVTYNCMI-GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEG 337

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TYN +I+G CK+  +  A+ +   M  KGC PD  +F 
Sbjct: 338 KFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFT 397

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 398 TLIDGYCGAKRIDDGMELLHE 418



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 39/236 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRLKEA 59
           LT+     +   +   ++G+C    +  A+     IC  DV  +++L+NGLC   R+ EA
Sbjct: 142 LTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEA 201

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVID 118
           V L D+MV  G+  + +TY   +    +     SA+ LL+ +E   + + N+ +YS +ID
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 119 GLCR-----------------------------------VGRWEEARKKLDQLSEKGLVP 143
           GLC+                                    GRW  A++ L ++ E+ + P
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISP 321

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            VVTYN LIN   K+G   EA +L  +M  +G  P++ ++N++I GF  ++  D A
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 6   QRFKGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKE 58
              K N  +Y   I+G+CK  R  DS         KGI  ++  Y+ +I G C   R   
Sbjct: 247 SHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSA 306

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLV 116
           A  L  +M+ + I+  +VTYN LI + + K+G+F   A L  + L R     N   Y+ +
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALI-NAFVKEGKFFEAAELYDEMLPRGIIP-NTITYNSM 364

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG C+  R + A      ++ KG  P V T+  LI+G C    I +  +LL +M  +G 
Sbjct: 365 IDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
             ++ ++NT+I GF +  + + A
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAA 447



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C         R +   +++ I  +V  Y++LIN      +  EA EL+
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M+ +GI    +TYN +I D + KQ R  A   +   +       ++  ++ +IDG C 
Sbjct: 347 DEMLPRGIIPNTITYNSMI-DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R ++  + L ++  +GLV   VTYN LI+G C  G +  A  L  QM   G  PD  +
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 183 FNTVIQGF 190
            NT++ G 
Sbjct: 466 CNTLLDGL 473



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 113/212 (53%), Gaps = 14/212 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 107 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHR 166

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA++LF ++       +++T+  L+ +   ++GR   A+ALL  +  +  + +   Y 
Sbjct: 167 VSEALDLFHQIC----RPDVLTFTTLM-NGLCREGRVVEAVALLDRMVENGLQPDQITYG 221

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +DG+C++G    A   L ++ E   + P VV Y+ +I+GLCK G   ++  L ++M++
Sbjct: 222 TFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQD 281

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FP+  ++N +I GF +      A   L++
Sbjct: 282 KGIFPNIVTYNCMIGGFCISGRWSAAQRLLQE 313



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 562

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   + Y  LI 
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 622

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K G I  A  +  +M   G +PD+ +   ++ GF  K E +RA + L+
Sbjct: 623 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 673



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E++   N   Y   IN   K  +        D  + +GI  +   Y+S+I+G C  +
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL  A ++F  M  +G + ++ T+  LI      +     M LL  + R     N   Y+
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C VG    A     Q+   G+ P +VT N L++GLC  G + +A ++   M++ 
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492

Query: 175 -----------GCFPDSTSFNTVIQGFL 191
                      G  PD  ++N +I G +
Sbjct: 493 KMDLDASHPFNGVEPDVLTYNILICGLI 520



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 31/181 (17%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A++LF  M+       ++ +N L+      +     ++L Q +ER +   +I  +++
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI----------------------- 152
           +I   C   +   A     +L++ GL P VVT+  L+                       
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 153 --------NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                   NGLC++G ++EA  LL +M E G  PD  ++ T + G     +T  A + L+
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 205 K 205
           K
Sbjct: 242 K 242



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  + F  N   +   ING CK   +D  +       ++GI  D  +Y +LI G      
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+R + E
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK+ +  SA+           I  +V +YS++I+GLC   R  ++  LF +
Sbjct: 219 TYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIE 278

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI   +VTYN +I   +   GR+SA   LLQ +   K   N+  Y+ +I+   + G
Sbjct: 279 MQDKGIFPNIVTYNCMI-GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEG 337

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TYN +I+G CK+  +  A+ +   M  KGC PD  +F 
Sbjct: 338 KFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFT 397

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 398 TLIDGYCGAKRIDDGMELLHE 418



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 39/236 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRLKEA 59
           LT+     +   +   ++G+C    +  A+     IC  DV  +++L+NGLC   R+ EA
Sbjct: 142 LTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEA 201

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVID 118
           V L D+MV  G+  + +TY   +    +     SA+ LL+ +E   + + N+ +YS +ID
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 119 GLCR-----------------------------------VGRWEEARKKLDQLSEKGLVP 143
           GLC+                                    GRW  A++ L ++ E+ + P
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISP 321

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            VVTYN LIN   K+G   EA +L  +M  +G  P++ ++N++I GF  ++  D A
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 6   QRFKGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKE 58
              K N  +Y   I+G+CK  R  DS         KGI  ++  Y+ +I G C   R   
Sbjct: 247 SHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSA 306

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLV 116
           A  L  +M+ + I+  +VTYN LI + + K+G+F   A L  + L R     N   Y+ +
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALI-NAFVKEGKFFEAAELYDEMLPRGIIP-NTITYNSM 364

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG C+  R + A      ++ KG  P V T+  LI+G C    I +  +LL +M  +G 
Sbjct: 365 IDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
             ++ ++NT+I GF +  + + A
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAA 447



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C         R +   +++ I  +V  Y++LIN      +  EA EL+
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M+ +GI    +TYN +I D + KQ R  A   +   +       ++  ++ +IDG C 
Sbjct: 347 DEMLPRGIIPNTITYNSMI-DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R ++  + L ++  +GLV   VTYN LI+G C  G +  A  L  QM   G  PD  +
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 183 FNTVIQGF 190
            NT++ G 
Sbjct: 466 CNTLLDGL 473



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 113/212 (53%), Gaps = 14/212 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 107 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHR 166

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA++LF ++       +++T+  L+ +   ++GR   A+ALL  +  +  + +   Y 
Sbjct: 167 VSEALDLFHQIC----RPDVLTFTTLM-NGLCREGRVVEAVALLDRMVENGLQPDQITYG 221

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +DG+C++G    A   L ++ E   + P VV Y+ +I+GLCK G   ++  L ++M++
Sbjct: 222 TFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQD 281

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FP+  ++N +I GF +      A   L++
Sbjct: 282 KGIFPNIVTYNCMIGGFCISGRWSAAQRLLQE 313



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 562

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   + Y  LI 
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 622

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K G I  A  +  +M   G +PD+ +   ++ GF  K E +RA + L+
Sbjct: 623 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 673



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E++   N   Y   IN   K  +        D  + +GI  +   Y+S+I+G C  +
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL  A ++F  M  +G + ++ T+  LI      +     M LL  + R     N   Y+
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C VG    A     Q+   G+ P +VT N L++GLC  G + +A ++   M++ 
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492

Query: 175 -----------GCFPDSTSFNTVIQGFL 191
                      G  PD  ++N +I G +
Sbjct: 493 KMDLDASHPFNGVEPDVLTYNILICGLI 520



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 31/181 (17%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++A++LF  M+       ++ +N L+      +     ++L Q +ER +   +I  +++
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI----------------------- 152
           +I   C   +   A     +L++ GL P VVT+  L+                       
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 153 --------NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                   NGLC++G ++EA  LL +M E G  PD  ++ T + G     +T  A + L+
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 205 K 205
           K
Sbjct: 242 K 242



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  + F  N   +   ING CK   +D  +       ++GI  D  +Y +LI G      
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCKI +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC P+  +FN
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+ + I+ ++VTYN LI + + K+G+F  A  L   +       N   YS +IDG C+
Sbjct: 314 QEMLERKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A      ++ KG  P ++T+N LI+G C    I +  +LL +M E G   D+T+
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT+I GF +  + + A   L++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQE 455



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK   +D+A         KG   ++  +++LI+G C   R+ + +EL 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+ A+  TYN LIH  +      +A+ LLQ +       +I     ++DGLC  
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 124 GRWEEA----------RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A          +K LD      G+ P V TYNILI+GL  +G  +EA++L  +M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ +++++I G   ++  D A+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ LF +M        +VT+  L+ +   ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLM-NGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C++G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +     SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 99  QTLERDKYEL-NIEVYSLVIDGLCR----------------------------------- 122
           + +E   + + N+ +YS +ID LC+                                   
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA++L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           ++++I GF  +N  D A
Sbjct: 363 YSSMIDGFCKQNRLDAA 379



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+K
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     ++++ GL P VVT+N L++GLC +  + EA 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            L  QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI G   
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   +D A +       K    +V  +++LING C   R+ + +ELF +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 608 GRRGIVANAITYITLI 623


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  K + H YGI I+  CK   + +A        K  +  + ++Y+ +++G    +R
Sbjct: 307 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 366

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVY 113
           L+EA+EL+ +++  GI    VTYN +I+   + +    A+ LL+ ++R K EL  +I  Y
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++I GL +VG  E A   L ++ + G++P   TY  LI  L   G +  A +LL +M +
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 486

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            G FPD  ++ T++Q  L +++ D A   L++ M
Sbjct: 487 AGIFPDDHTYGTLVQ-ILCRSDVDAAWDLLQEMM 519



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK------KGIC--------LDVFVYSS 45
           L E + +G   N   +G+ ++ +C  R++D A+       +  C         D   Y++
Sbjct: 52  LREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTA 111

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           +++GL         +E ++KMVA      L+TY  L+    +      A  + + + R  
Sbjct: 112 IVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKG 171

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           ++ +I  YS +IDGL + GR +EARK +D +  +G  P  V Y  ++ GLCK G I EA 
Sbjct: 172 HKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAV 231

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K + +M+ +   P   +++ ++ G++   + + A + +++
Sbjct: 232 KTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEE 271



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 96/177 (54%), Gaps = 8/177 (4%)

Query: 21  GMCKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           GM K+ E    ++    +    D   Y+  I  L +  R +EA ++F+ MV +G   ++ 
Sbjct: 258 GMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMH 317

Query: 77  TYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TY  +I DN+ K+G  +A   +L+ +++   + N  +Y++++DG  +  R EEA +   +
Sbjct: 318 TYGIII-DNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQR 376

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFNTVIQGF 190
           + + G++P  VTYN +IN LCK   + EA +LL +M+ +     P   +++ +I G 
Sbjct: 377 ILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGL 433



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 83/152 (54%), Gaps = 2/152 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           +  Y+ L++GLC  ++++ A ++F++M+ +G   +++ Y+ LI D   K GR   A  L+
Sbjct: 141 LLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLI-DGLSKAGRVDEARKLV 199

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +           Y+ ++ GLC+ GR +EA K + ++  + L P V TY+ ++ G    
Sbjct: 200 DLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGM 259

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + EA  ++ +M ++ C PD+ S+   I+  
Sbjct: 260 GKVEEAFAVMEEMADRDCAPDTISYTMFIEAL 291



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   + G+CK   I  A+K         +   V  YS ++ G     +++EA  + ++M
Sbjct: 213 AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEM 272

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +    + ++Y   I   +    R  A  + +T+     + ++  Y ++ID  C+ G  
Sbjct: 273 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSM 332

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A   L  + +  + P    Y ++++G  K   + EA +L  ++ + G  P + ++NTV
Sbjct: 333 AAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTV 392

Query: 187 IQGFLVKNETDRASSFLKK 205
           I       + D A   L++
Sbjct: 393 INALCKLKKMDEALELLRE 411


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LDV   ++L+NG C    + EA  +FD+M   G+    VTY  L+H  +    R    AL
Sbjct: 36  LDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFAL 95

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + + R   E N+  Y+ +I   CR G +E AR   D++  +G+V  VV+YN LI GLC+
Sbjct: 96  FEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCR 155

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + +A KLL  M+ +G  P   +FN ++ G+    +   A  F  +
Sbjct: 156 HGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 3/193 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
            +  +G R  G     E+    + G+  +++ Y+ LI   C     + A  LFD+M  +G
Sbjct: 82  GYFTHGQREKGFALFEEMR---RGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRG 138

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I   +V+YN LI         + A  LL  +  +    +I  ++L++DG  + G+   A 
Sbjct: 139 IVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNAL 198

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              +Q+   G  P  VTYN+LI G C+   +  A++ L  MKE+G  P   ++  +I  F
Sbjct: 199 PFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSF 258

Query: 191 LVKNETDRASSFL 203
             +N   +A   L
Sbjct: 259 ARENHMGKAFEIL 271



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 1   FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           F L E+  +G    N + Y   I   C+  E + A         +GI  +V  Y++LI G
Sbjct: 93  FALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAG 152

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL 108
           LC   +L +A +L D M  +G    ++T+N L+ D + K G+ S A+     ++   ++ 
Sbjct: 153 LCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV-DGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y+++I G CR      A + L  + E+GL P  VTY ILI+   ++  + +A ++L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKN 194
             M++ G   D+ ++  +++   ++ 
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEG 297



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G       Y+ LI G C    +  A      M  +G+    VTY  LI D++ ++     
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI-DSFARENHMGK 266

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  +E+   E++   Y +++  LC  G  ++ARK    + EKG+ P  V Y+++I 
Sbjct: 267 AFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIY 326

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  ++G   +A KL+++M++KG  P+S S+   I+     ++   A + L
Sbjct: 327 GYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALL 376



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 7/175 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y + I G C+ R++  A +       +G+      Y+ LI+     N + +A 
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+   M   G+  +  TY  L+     +     A  L Q++     E +  +Y ++I G 
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGY 328

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            R G   +A K + ++ +KGL+P   +Y + I  LCK     EA+ LL  M   G
Sbjct: 329 GREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAG 383



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 18  RINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           R N M K  EI + ++K G+ +D   Y  L+  LC    +K+A +LF  M  +G+    V
Sbjct: 260 RENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNV 319

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            Y+ +I+    +   + A+ L+  + +     N   Y L I  LC+  + +EA   LD +
Sbjct: 320 IYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379

Query: 137 SEKGL 141
              GL
Sbjct: 380 VRAGL 384


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   +NG+C+ R++ SA          G+  D   Y++LI+G C   
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 305

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L  A+E+   MVA+G+  + VTY  LI     K GR + A  +L  +     E +   Y
Sbjct: 306 ELDMAMEIKQNMVAEGVGLDEVTYTALI-SGLSKAGRSADAERVLGEMMEAGLEPDNTTY 364

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++VID  CR G  +   + L ++  KG  PGVVTYN+++NG CK G +  AD LL  M  
Sbjct: 365 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 424

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  PD  ++N ++ G 
Sbjct: 425 IGVSPDDITYNILLDGH 441



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  V+ I I+  CK  + ++ ++       +G+  D   Y++++NGLC    LK A 
Sbjct: 217 MKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSAS 276

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M + G+  + VTY  LI    +++    AM + Q +  +   L+   Y+ +I GL
Sbjct: 277 GIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGL 336

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR  +A + L ++ E GL P   TY ++I+  C+KG +    +LL +M+ KG  P  
Sbjct: 337 SKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGV 396

Query: 181 TSFNTVIQGF 190
            ++N ++ GF
Sbjct: 397 VTYNVIMNGF 406



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 42/229 (18%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+GMC+  ++D A        + G+  DV+ Y +LI GLC   R+++A  +F+KM  +G+
Sbjct: 158 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 217

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               V +  LI  + +K    + + L + +       +   Y+ +++GLCR    + A  
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKK--------------------------------- 158
            + ++   GL P  VTY  LI+G CK+                                 
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 337

Query: 159 --GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   +A+++L +M E G  PD+T++  VI  F  K +       LK+
Sbjct: 338 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 386



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 3/180 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D    +G+   V  ++++I+G+C    L  A  L  +M   G+T ++ TY  LI     +
Sbjct: 140 DEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ-GLCR 198

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A  + + +     + N  V++++ID  C+ G  E   +   ++ E+G+ P  VT
Sbjct: 199 VGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVT 258

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           YN ++NGLC+   +  A  ++V+M+  G  PD+ ++ T+I G+  + E D A   +K+NM
Sbjct: 259 YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAME-IKQNM 317



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+D A       + +G+ LD   Y++LI+GL    R  +A  +  +M
Sbjct: 293 TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEM 352

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+  +  TY  +I     K    + + LL+ ++    +  +  Y+++++G C++G+ 
Sbjct: 353 MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQM 412

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L+ +   G+ P  +TYNIL++G CK G + + ++L      KG  PD   + ++
Sbjct: 413 KNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTVPDLGVYTSI 469

Query: 187 IQGFLVKNETDR 198
           + G +VK +T +
Sbjct: 470 V-GEIVKKKTTK 480



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+++GI L+    + L++    F    EA   + +++  G+  E   +N L+ D      
Sbjct: 75  ALRRGIRLEPTSCTGLMS---RFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGE 131

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             SA  +   ++       +  ++ +I G+CR G  + A     ++SE G+ P V TY  
Sbjct: 132 LASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGA 191

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           LI GLC+ G I +A  +  +M  +G  P++  F  +I     K + +
Sbjct: 192 LIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 238



 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           QL + GL P    +N+L+  L + G +  A  +  +M+ +G      SFNT+I G     
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165

Query: 195 ETDRASSFLKK 205
           + D A +  ++
Sbjct: 166 DLDGAETLHRR 176


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
             E R KG       Y I I G+C+ ++   A+K        G+  ++  Y+ LING C 
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  AV LF+++ + G++  LVTYN LI    + +    A+ L++ +E      +   
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVT 405

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++ID   R+   E+A +    + + GLVP V TY++LI+GLC  G + EA KL   + 
Sbjct: 406 YTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLG 465

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E    P+S  +NT+I G+  +  + RA   L +
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE 498



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +GI I G C+        R +    + G+  +V +Y++LI+G C +  +  A  LF KM 
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMD 220

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TY+ L++  +++  +     + + ++R     N   Y+ +I   C  G  +
Sbjct: 221 RLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVD 280

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A K   ++ EKG+  GV+TYNILI GLC+     EA KL+ ++ + G  P+  ++N +I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 188 QGFLVKNETDRA 199
            GF    + D A
Sbjct: 341 NGFCDVGKMDTA 352



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 18  RINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           R+N   K  E+ S ++K G+  DV+ YS LI+GLC    +KEA +LF  +    +    V
Sbjct: 415 RLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            YN +IH   ++   + A+ LL  +       N+  +   I  LCR  +W+EA   L Q+
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534

Query: 137 SEKGLVPGVVTYNIL 151
              GL P V  Y ++
Sbjct: 535 INSGLKPSVSLYKMV 549



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 7/179 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G  K+  +  A+       ++ I      Y+ LI+     N  ++A E+   M 
Sbjct: 371 YNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLME 430

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  ++ TY+ LIH          A  L ++L     + N  +Y+ +I G C+ G   
Sbjct: 431 KSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY 490

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            A + L+++   G+VP V ++   I  LC+     EA+ LL QM   G  P  + +  V
Sbjct: 491 RALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL----IHDNWEKQGRFSAMAL 97
           +Y +++N     +   +A+     M+ +G      T+N L    I  N+  +  +    L
Sbjct: 91  LYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL 150

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              +  D Y   I     +I G C  G + +  + L  L E GL P VV Y  LI+G CK
Sbjct: 151 KSKVVLDAYSFGI-----MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCK 205

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            G +M A  L  +M   G  P+  +++ ++ GF 
Sbjct: 206 YGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFF 239


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K N   Y   +NG C + E++ A        + G+  DV  YS +I+G C    
Sbjct: 305 MMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKM 364

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA++LF++M  + I  ++VTYN LI D   K GR S A+ L+  +       NI  Y+
Sbjct: 365 VDEAMKLFEEMHCKQIFPDVVTYNSLI-DGLCKSGRISYALKLIGEMHDRGQPPNIITYN 423

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D LC+    ++A + L +L +  + P V TYNILINGLCK G + +A K+   +   
Sbjct: 424 SLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVN 483

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D  ++NT+I+GF
Sbjct: 484 GYNIDVYTYNTMIKGF 499



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK + ++ A       + K IC  V  Y++LI GLC   +LK+A+ L  KM
Sbjct: 211 MYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKM 270

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS--------------------------------- 93
           + + I   + T++ L+ D + K+G+                                   
Sbjct: 271 ILENINPTVYTFSILV-DAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNE 329

Query: 94  ---AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A ++  T+ +     ++  YS++I G C++   +EA K  +++  K + P VVTYN 
Sbjct: 330 VNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+GLCK G I  A KL+ +M ++G  P+  ++N+++      +  D+A   L K
Sbjct: 390 LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTK 444



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 7/158 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I I+G CKI+ +D A+K       K I  DV  Y+SLI+GLC   R+  A++L  +
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGE 409

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G    ++TYN L+    +      A+ LL  L+    + ++  Y+++I+GLC+ GR
Sbjct: 410 MHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGR 469

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
            ++A+K  + +   G    V TYN +I G CKKG ++ 
Sbjct: 470 LKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIP 507



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK+ +  +A++       K + LDV +Y+++I+G+C    + +A + + +MV
Sbjct: 177 YRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMV 236

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A+ I   +VTYN LI           A+ LL  +  +     +  +S+++D  C+ G+ +
Sbjct: 237 AKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVK 296

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+     + +K + P +VTYN L+NG C    + +A+ +   M + G  PD  S++ +I
Sbjct: 297 EAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMI 356

Query: 188 QGFLVKNETDRA 199
            GF      D A
Sbjct: 357 SGFCKIKMVDEA 368



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 35/205 (17%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG   D    ++LI GLC    + +A+   DK++A G     V+Y  LI+   +    
Sbjct: 131 LKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQT 190

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ +L+ ++     L++ +Y+ +IDG+C+     +A     ++  K + P VVTYN L
Sbjct: 191 KAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTL 250

Query: 152 INGL-----------------------------------CKKGMIMEADKLLVQMKEKGC 176
           I GL                                   CK+G + EA  + V M +K  
Sbjct: 251 ICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDV 310

Query: 177 FPDSTSFNTVIQGFLVKNETDRASS 201
            P+  ++N+++ G+ + NE ++A S
Sbjct: 311 KPNIVTYNSLMNGYCLVNEVNKAES 335



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  ++   S LIN          +  +F  ++ +G   + +T   LI     K     A
Sbjct: 99  GIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKA 158

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +     +    ++LN   Y  +I+GLC+VG+ + A + L ++  K +   VV YN +I+G
Sbjct: 159 LHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDG 218

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +CK  ++ +A     +M  K   P   ++NT+I G  +  +   A   L K
Sbjct: 219 VCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHK 269



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFS-AMALLQT 100
           YSS  N    +++L   V  F+ ++ Q   T  ++ +  ++  +  K   +S  ++L + 
Sbjct: 36  YSSFSNSTTLYSQLHNLVSSFNHLLHQKNPTPSIIQFGKIL-GSLVKANHYSIVVSLHRQ 94

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +E +    N+   S++I+   ++G    +      + +KG  P  +T   LI GLC KG 
Sbjct: 95  MEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGD 154

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I +A     ++   G   +  S+ T+I G     +T  A   L++
Sbjct: 155 IHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRR 199


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E +   N   + + I+G CK   + +A+K       +G+   V  Y+SL+NGLC   
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L EA  L D+M++  +   ++TYN LI+   +K+    A  L   + +     N+  ++
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G+ EEA      + EKG +P   TYN LI G C++G + E   LL +M+ +
Sbjct: 413 TLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCR 472

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G   D+ ++N +I  +  K E  +A+  +
Sbjct: 473 GVKADTVTYNILISAWCEKKEPKKAARLI 501



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  K     Y   +NG+C   K+ E    +D  +   +  +V  Y++LING C   
Sbjct: 328 EMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKK 387

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVY 113
            L+EA ELFD +  QG+T  ++T+N L+H  + K G+     LLQ +  +K +  N   Y
Sbjct: 388 LLEEARELFDNIGKQGLTPNVITFNTLLH-GYCKFGKMEEAFLLQKVMLEKGFLPNASTY 446

Query: 114 SLVIDGLCRVGRWEE-----------------------------------ARKKLDQLSE 138
           + +I G CR G+ EE                                   A + +D++ +
Sbjct: 447 NCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLD 506

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KGL P  +TYNIL+NG C +G +  A  L  QM+++G + +  ++N +IQG+  K + + 
Sbjct: 507 KGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLED 566

Query: 199 ASSFLKK 205
           A+  L +
Sbjct: 567 ANGLLNE 573



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFV----------YSSLINGLC 51
           D+    F  N   Y   I+G CK+  +    K    L   V          ++ LI+G C
Sbjct: 255 DMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC 314

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               L  A+++F++M +QG+   +VTYN L++    +     A  LL  +     + N+ 
Sbjct: 315 KDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVI 374

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+G C+    EEAR+  D + ++GL P V+T+N L++G CK G + EA  L   M
Sbjct: 375 TYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVM 434

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EKG  P+++++N +I GF  + + +   + L +
Sbjct: 435 LEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 5/172 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ I  ++  ++++INGLC   +L +A ++ D M   G    +VTYN LI D + K GR
Sbjct: 222 IRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLI-DGYCKMGR 280

Query: 92  ----FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
               + A A+L+ +  +K   N   ++++IDG C+      A K  +++  +GL P VVT
Sbjct: 281 VGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVT 340

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN L+NGLC +G + EA  LL +M      P+  ++N +I G+  K   + A
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEA 392



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 10/199 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++  ++   N   +   ING+CK+ +++ A          G   +V  Y++LI+G C   
Sbjct: 220 EMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMG 279

Query: 55  R---LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           R   + +A  +  +MV   ++   VT+N LI    + +   +A+ + + ++    +  + 
Sbjct: 280 RVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVV 339

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +++GLC  G+  EA+  LD++    L P V+TYN LING CKK ++ EA +L   +
Sbjct: 340 TYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNI 399

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            ++G  P+  +FNT++ G+
Sbjct: 400 GKQGLTPNVITFNTLLHGY 418



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q    N   +   ++G CK  +++ A       ++KG   +   Y+ LI G C   
Sbjct: 398 NIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREG 457

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++E   L ++M  +G+ A+ VTYN LI    EK+    A  L+  +     + +   Y+
Sbjct: 458 KMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYN 517

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G C  G    A     Q+ ++G    VVTYN+LI G C+KG + +A+ LL +M EK
Sbjct: 518 ILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEK 577

Query: 175 GCFPDSTSFNTVIQGFLVK 193
           G  P+ T++  + +  + K
Sbjct: 578 GLIPNRTTYEIIKEEMMEK 596



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 7/178 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIREIDSAIK----KGICLDVFVYSSLINGLCTFNR 55
           + E+ F  N   Y   I G C   K+ E+ + +     +G+  D   Y+ LI+  C    
Sbjct: 434 MLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKE 493

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            K+A  L D+M+ +G+    +TYN L++    +    +A+ L + +E++    N+  Y++
Sbjct: 494 PKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNV 553

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +I G CR G+ E+A   L+++ EKGL+P   TY I+   + +KG + + +  L    +
Sbjct: 554 LIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEGHLYHASQ 611



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 75  LVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           +++ NPL+     K+  F  +  + + + R K   N+  ++ VI+GLC+VG+  +A   +
Sbjct: 195 VLSCNPLL-SALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMI---MEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           D +   G  P VVTYN LI+G CK G +    +AD +L +M E    P+S +FN +I GF
Sbjct: 254 DDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGF 313


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 114/201 (56%), Gaps = 8/201 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+  A       ++KG+  +V  Y++L++GLC    +  A EL  +M
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   + TYN LI+   +      A+ L++ ++   +  +   Y+ ++D  C++G  
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A + L  + +KGL P +VT+N+L+NG C  GM+ + ++L+  M +KG  P++T+FN++
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           ++ + ++N   RA+  + K M
Sbjct: 609 MKQYCIRNNM-RATIEIYKGM 628



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L +  F+GN      Y + ++G C++ ++   +K       KG+  + + Y+S+I+ LC 
Sbjct: 275 LIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCK 334

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIE 111
             R+ EA ++   M  Q I  + V Y  LI   + K G  S    L   ++R K   +  
Sbjct: 335 TGRVVEAEQVLRVMKNQRIFPDNVVYTTLI-SGFGKSGNVSVEYKLFDEMKRKKIVPDFV 393

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I GLC+ G+  EARK   ++  KGL P  VTY  LI+G CK G + EA  L  QM
Sbjct: 394 TYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM 453

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EKG  P+  ++  ++ G     E D A+  L +
Sbjct: 454 VEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE 487



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 44/246 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y   ++G+CK  E+D A        +KG+  +V  Y++LINGLC    
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +++AV+L ++M   G   + +TY  ++ D + K G  + A  LL+ +     +  I  ++
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIM-DAYCKMGEMAKAHELLRIMLDKGLQPTIVTFN 571

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVP------------------------------- 143
           ++++G C  G  E+  + +  + +KG++P                               
Sbjct: 572 VLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ 631

Query: 144 GVV----TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GVV    TYNILI G CK   + EA  L  +M EKG    + S+N++I+GF  + + + A
Sbjct: 632 GVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEA 691

Query: 200 SSFLKK 205
               ++
Sbjct: 692 RKLFEE 697



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 35/203 (17%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+C +   Y+ +++ LC   ++KEA  L  +M  +G   ++V+Y+ ++    + +     
Sbjct: 247 GVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKV 306

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL--------------------- 133
           + L++ L+R   + N   Y+ +I  LC+ GR  EA + L                     
Sbjct: 307 LKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISG 366

Query: 134 --------------DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
                         D++  K +VP  VTY  +I+GLC+ G ++EA KL  +M  KG  PD
Sbjct: 367 FGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPD 426

Query: 180 STSFNTVIQGFLVKNETDRASSF 202
             ++  +I G+    E   A S 
Sbjct: 427 EVTYTALIDGYCKAGEMKEAFSL 449



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 79/139 (56%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           +F+ ++ A  +F +    G+    V+YN ++H   +      A +LL  +E      ++ 
Sbjct: 229 SFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVV 288

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS+++DG C+V +  +  K +++L  KGL P   TYN +I+ LCK G ++EA+++L  M
Sbjct: 289 SYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVM 348

Query: 172 KEKGCFPDSTSFNTVIQGF 190
           K +  FPD+  + T+I GF
Sbjct: 349 KNQRIFPDNVVYTTLISGF 367



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 44/217 (20%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +++E+  + N   Y   ING+CK+  I+ A+K        G   D   Y+++++  C   
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMG 546

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD--------------NW-------EKQGRFS 93
            + +A EL   M+ +G+   +VT+N L++                W            F+
Sbjct: 547 EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFN 606

Query: 94  AMALLQTLERDKYELNIEVY---------------SLVIDGLCRVGRWEEARKKLDQLSE 138
           ++ + Q   R+     IE+Y               +++I G C+    +EA     ++ E
Sbjct: 607 SL-MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVE 665

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           KG      +YN LI G  K+    EA KL  +M+  G
Sbjct: 666 KGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +NG C         R I   + KGI  +   ++SL+   C  N ++  +E++  M
Sbjct: 569 TFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM 628

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            AQG+  +  TYN LI  + + +    A  L + +    + L    Y+ +I G  +  ++
Sbjct: 629 HAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKF 688

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
           EEARK  +++   G +     Y+I ++
Sbjct: 689 EEARKLFEEMRTHGFIAEKEIYDIFVD 715



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y IR N    I        +G+  D   Y+ LI G C    +KEA  L  +MV +G +  
Sbjct: 612 YCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLT 671

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
             +YN LI   ++++    A  L + +    +    E+Y + +D     G WE   +  D
Sbjct: 672 AASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCD 731

Query: 135 QLSEKGLV 142
           +  EK LV
Sbjct: 732 EAIEKCLV 739


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 10/195 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ING+CK + +D A         K +  D   Y+SLI+GLC   R+ +  +  
Sbjct: 192 NVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFI 251

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G  A ++TYN L+    +      A+ LL  ++      NI  Y++++DGLC+ 
Sbjct: 252 GEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKN 311

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A++    L  KG       Y ++INGLCK+G + EA  LL +M++  C PD  ++
Sbjct: 312 GRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTY 371

Query: 184 NTVIQGFLVKNETDR 198
              I+      E+DR
Sbjct: 372 EITIRALF---ESDR 383



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +QR + N   Y   ++G   ++E++ A +       +G+  +V  Y  +INGLC    
Sbjct: 149 MIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKM 208

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LF +M ++ +  + V YN LI    + +  +     +  +       NI  Y+ 
Sbjct: 209 VDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNS 268

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+  + ++A   L ++  +G+ P + TY IL++GLCK G + +A ++   +  KG
Sbjct: 269 LLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKG 328

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              D+  +  +I G   +   D A S L K
Sbjct: 329 YQLDARIYTVMINGLCKEGFLDEALSLLSK 358



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 2/193 (1%)

Query: 15  YGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           YG  I G  K  +  ++    K +  ++  +++L++GLC    +K+A  +   M+ Q + 
Sbjct: 96  YGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVE 155

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             +VTYN L+   +  +    A  L  T+       N+  Y ++I+GLC+    +EA   
Sbjct: 156 PNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANL 215

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
             ++  K +VP  V YN LI+GLCK   I +    + +M ++G   +  ++N+++ G   
Sbjct: 216 FKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCK 275

Query: 193 KNETDRASSFLKK 205
            ++ D+A + L K
Sbjct: 276 NHQVDKAITLLTK 288



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 59/221 (26%)

Query: 29  DSAIKKGICL----------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           D  I KG  L          DV +Y+++I+ LC    + +  +L+ +M+ + I  ++VTY
Sbjct: 18  DHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTY 77

Query: 79  NPLIHD-------NWEKQGRFS-------AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           N LI+           K+  FS       A+ LL  +       NI  ++ ++DGLC+ G
Sbjct: 78  NTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDG 137

Query: 125 RWEEARKKL-----------------------------------DQLSEKGLVPGVVTYN 149
             ++AR  L                                   + +S +G+ P V +Y 
Sbjct: 138 EVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYK 197

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++INGLCK  M+ EA  L  +M  K   PD+ ++N++I G 
Sbjct: 198 VMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGL 238



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 42/153 (27%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ++G+CK  ++D AI        +GI  +++ Y+ L++GLC   RL++A E+
Sbjct: 261 ANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEV 320

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +  ++ +G                                   Y+L+  +Y+++I+GLC+
Sbjct: 321 YQDLLNKG-----------------------------------YQLDARIYTVMINGLCK 345

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            G  +EA   L ++ +    P  VTY I I  L
Sbjct: 346 EGFLDEALSLLSKMEDNKCTPDGVTYEITIRAL 378



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 39/169 (23%)

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           GLC    +++A+   D ++A+G                           L  +ER   + 
Sbjct: 3   GLCLNGEVRKALYFHDHVIAKGFH-------------------------LNHIERLLVKP 37

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI--------------NG 154
           ++ +Y+ +ID LC+     +      ++ +K + P VVTYN LI               G
Sbjct: 38  DVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYG 97

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               G + EA  LL QM  K   P+  +F T++ G     E  +A + L
Sbjct: 98  FSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVL 146


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 109/209 (52%), Gaps = 6/209 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLK 57
           ++T + F  +   Y   I+G+CK   +  A+    +         Y+SLI G C    + 
Sbjct: 245 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMD 304

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
           EA+ L  KMV      +++TY  L+   + K GR   A  L Q +  +K   ++  ++ +
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLM-SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSL 363

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC  GR E+A + L++++ +G  P + TYN +++G CK   + +A++L+   + +G 
Sbjct: 364 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P++ ++N ++ G      TD+A  +L +
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQ 452



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 11/202 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+  ++D AI+            DV  Y++L++  C   RL +A ELF +M
Sbjct: 289 TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQM 348

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA  ++ ++VT+  L+ D    +GR   A+ LL+ + R      I  Y+ V+DG C+  +
Sbjct: 349 VANKLSPDVVTFTSLV-DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQ 407

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFN 184
             +A + +     +G VP  VTYNIL+ G C+ G   +A + L Q+  E G  P S +  
Sbjct: 408 VRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMY 467

Query: 185 TVIQGFLVKN-ETDRASSFLKK 205
            +I   L ++  TD A  F ++
Sbjct: 468 AIILDALCRDGRTDDAVQFYEE 489



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++  CK+  +D A       +   +  DV  ++SL++GLC   R+++A+EL +++
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G    + TYN ++    +      A  L+       +  N   Y++++ G CR GR 
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 443

Query: 127 EEARKKLDQL-SEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++A + LDQL SE G  P  V  Y I+++ LC+ G   +A +   +M ++G  P + +F 
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 503

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           TV+      ++  +A   L++
Sbjct: 504 TVVFALCKAHQPQQAHELLEE 524



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 6/180 (3%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF-DKMVAQGITAELVTYNPLIHDNW 86
           ++  + +G+  +   YS+L++GLC   RL EAV L   ++  +G T ++VTY+ +I D  
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVI-DGL 265

Query: 87  EKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            K GR   A+ + + +      +    Y+ +I G CR G  +EA + L ++ +    P V
Sbjct: 266 CKAGRLRDAVDIFEEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDV 322

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +TY  L++  CK G + +A +L  QM      PD  +F +++ G   +   + A   L++
Sbjct: 323 ITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 382



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 103/199 (51%), Gaps = 11/199 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           FD   +    N   Y   I+ +CK R +D A+        +G+     +++ +I GLC  
Sbjct: 69  FDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRA 128

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
            RL+ A+ ++ +M       + +TY  L+H    K GR   A+ +LQ +   ++  +   
Sbjct: 129 GRLRHALGVYRQM-NDAHPPDFLTYTKLVH-GLSKAGRLRDAVQVLQEMVSARHVPDNTT 186

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV-QM 171
            ++V+  LC   R ++AR+ ++++  +G+    +TY+ L++GLCK   + EA  LL+ ++
Sbjct: 187 LTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEV 246

Query: 172 KEKGCFPDSTSFNTVIQGF 190
             +G  PD  +++TVI G 
Sbjct: 247 TRRGFTPDIVTYSTVIDGL 265



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+C    ++ A+       ++G    ++ Y+ +++G C  N++++A EL     ++G 
Sbjct: 364 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTL--ERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               VTYN L+           A+  L  L  E      ++ +Y++++D LCR GR ++A
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 483

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  +++ ++G VP   T+  ++  LCK     +A +LL +M + G  P   + + V+  
Sbjct: 484 VQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 543

Query: 190 F 190
           +
Sbjct: 544 Y 544



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D    +G+  D    ++++  LC       A+ LFDKM   G       YN LIH   +
Sbjct: 34  LDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCK 92

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    AM LL  ++         ++++VI GLCR GR   A     Q+++    P  +T
Sbjct: 93  ARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLT 151

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y  L++GL K G + +A ++L +M      PD+T+   V+Q   + +  D A   +++
Sbjct: 152 YTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEE 209



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y +LI+ LC    L EA+ L   M ++G+    + +N +I     + GR      +   
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVI-GGLCRAGRLRHALGVYRQ 140

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             D +  +   Y+ ++ GL + GR  +A + L ++     VP   T  +++  LC    +
Sbjct: 141 MNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +A +L+ +M  +G   ++ +++ ++ G       D A + L
Sbjct: 201 DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALL 242


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 7/207 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAV 60
           F+ N  VY   I+G C   E++ A+K    +D       V  Y+ LI+GLC   +++ A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +MV  G+   +VTY  LI     +     A  LL  +E +    N   +S++ID L
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDAL 327

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + EEA+  L  L +KG+    V Y  LI+GLCK G I  AD+L+ +M  +G  PD+
Sbjct: 328 CKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDA 387

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            S++++I G   + +  +A+  L+  M
Sbjct: 388 HSYSSLIDGLCRQKKLSQATLMLEDMM 414



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 108/184 (58%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I+ +CK  +++ A       +KKG+ ++  VY+SLI+GLC   ++  A EL  KM+
Sbjct: 320 FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G   +  +Y+ LI D   +Q + S A  +L+ +     + +   Y+++ID L R    
Sbjct: 380 SEGFVPDAHSYSSLI-DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS 438

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E  +K  D++   G+ P +VTY + +   C++G + +A+ ++VQM ++G FP+  ++NT+
Sbjct: 439 EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498

Query: 187 IQGF 190
           I+G+
Sbjct: 499 IRGY 502



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            L ++  K N  VY   I+G+CK  +ID+A       I +G   D   YSSLI+GLC   
Sbjct: 342 SLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A  + + M+ +GI A  VTY  +I +   + G      +   +       +I  Y+
Sbjct: 402 KLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYT 461

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + +   C  GR E+A   + Q+ ++G+ P +VTYN LI G    G++ +A      M  K
Sbjct: 462 VFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGK 521

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P+  S+  +++  + K+ +D +    K
Sbjct: 522 GWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN  C   +I +A       +  G+  D + Y+S + G C    L  A  +F
Sbjct: 71  NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVF 130

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +G      TY  L+H          AMA+   +  D    +  VY+ ++ GLC  
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA   L++    G  P +V YN LI+G C  G +  A K+   M    C P+  ++
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250

Query: 184 NTVIQGFLVKNETDRA 199
             +I G     + +RA
Sbjct: 251 TELIHGLCKSGKVERA 266



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G     F Y++L++GL     ++EA+ +F  M A     +   Y  ++H   E      
Sbjct: 136 RGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEE 195

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  LL+    + +E NI VY+ +IDG C  G  E A K  + +      P V TY  LI+
Sbjct: 196 AEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIH 255

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           GLCK G +  A  L  +M E G  P+  ++  +IQG
Sbjct: 256 GLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQG 291



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +YS  I  LC  +RL+EA   F  M    +T     Y  +I      +    A+ LL ++
Sbjct: 576 IYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSM 635

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  Y  ++E Y ++I  LC  G +  A++    L  K      + + ILI GL +KG +
Sbjct: 636 TKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSV 695

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQG-FLVKNE 195
            E   LL  MKE G  P S + N +I G   V NE
Sbjct: 696 AEFSSLLSVMKEHGYQP-SNTINAMITGEITVTNE 729



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 58/245 (23%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI---------DSAIKKGICLDVFVYSSLINGLCT 52
           D+ E+  + +   Y I I+ +  +RE+         D  I  GI  D+  Y+  +   C 
Sbjct: 412 DMMEKGIQASPVTYTIIIDEL--VREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCE 469

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R+++A  +  +MV +G+   LVTYN LI                              
Sbjct: 470 EGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529

Query: 84  ------------------DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
                             D W+         LL+ +   +  L  ++YS  I  LCRV R
Sbjct: 530 YTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDR 589

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA+     +    L P    Y  +I+  C+  ++ +A  LL  M + G  P   S+  
Sbjct: 590 LEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRI 649

Query: 186 VIQGF 190
           +I   
Sbjct: 650 IISSL 654



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+  L       +   L  +M A+     L TY  LI+         +A   L +L  
Sbjct: 45  NTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQHLTSLLH 100

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                +   Y+  + G CR G    A +    +  +G +    TY  L++GL   GM+ E
Sbjct: 101 AGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVRE 160

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  + V M+   C PD+  + T++ G 
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGL 187



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 47/220 (21%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-------- 83
           + +G+  ++  Y++LI G      + +A   F+ MV +G      +Y  L+         
Sbjct: 484 VDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSS 543

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNI--------------------------------- 110
           DN     + + M  LQ L  D  E  +                                 
Sbjct: 544 DNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNA 603

Query: 111 ------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                 +VY+ +ID  CR+    +A   LD +++ G +P + +Y I+I+ LC+ G    A
Sbjct: 604 NLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTA 663

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            ++   +  K    D   +  +I G L K      SS L 
Sbjct: 664 KEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLS 703


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 9/194 (4%)

Query: 15  YGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   ING CK  E+D A         + GI  DV  Y+S+++GLC   ++  A E+  +M
Sbjct: 80  YSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREM 139

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +  T++ LI      +    A+ L  + L    ++ ++  Y+ +IDG C+ G 
Sbjct: 140 KLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGN 199

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+A K L  +  +  VP VVTY+ L++GLCK G + +A  L  +M  KGC P+  ++ T
Sbjct: 200 LEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTT 259

Query: 186 VIQGFLVKNETDRA 199
           +I G    ++ D A
Sbjct: 260 LIHGLCAAHKVDAA 273



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           LT   +K +   Y   I+G CK   ++ A+K       +    +V  YSSL++GLC    
Sbjct: 175 LTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 234

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A++LF +M ++G    +VTY  LIH         +A  L+  +       +   Y+ 
Sbjct: 235 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-EK 174
           ++DG CR+GR EEA++   +++ K  +P  +TY  L+ G C    + EA  LL  MK   
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +++ V+ G+        A+ F+++
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 385



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T      +   Y   ++G+C+  ++D A +       KG+  D F +S+LI G C   +
Sbjct: 104 VTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 163

Query: 56  LKEAVELFDK-MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           + EA++L+ + + +     ++VTY  LI D + K G    AM +L  +E  K   N+  Y
Sbjct: 164 VDEALKLYKEILTSSSWKPDVVTYTALI-DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTY 222

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S ++ GLC+ G  ++A     +++ KG VP VVTY  LI+GLC    +  A  L+ +M  
Sbjct: 223 SSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA 282

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C PD+ S+N ++ G+      + A    K+
Sbjct: 283 TCCPPDTVSYNALLDGYCRLGRIEEAKQLFKE 314



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 12/214 (5%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK--KGICL------DVFVYSSLINGLCTF 53
           E + KG   +   +   I G C  R++D A+K  K I        DV  Y++LI+G C  
Sbjct: 138 EMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKS 197

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L++A+++   M  +     +VTY+ L+H   +      A+ L + +       N+  Y
Sbjct: 198 GNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTY 257

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC   + + AR  +D+++     P  V+YN L++G C+ G I EA +L  +M  
Sbjct: 258 TTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMAT 317

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           K C PD  ++  +++GF   +  + A  FL +NM
Sbjct: 318 KSCLPDRITYTCLVRGFCNASRLEEA-RFLLENM 350



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 15  YGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM- 66
           Y   ++G C++  I+ A      +    CL D   Y+ L+ G C  +RL+EA  L + M 
Sbjct: 292 YNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 351

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A GI  ++VTY+ ++   + +  RF  A   +Q +       N   YS +IDGLC+ GR
Sbjct: 352 TAAGIDPDVVTYS-IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 410

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A + L  +  K + P V T+N +I  LC+ G + EA KLLV M   G  P   ++ T
Sbjct: 411 VDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTT 470

Query: 186 VIQGF 190
           +++GF
Sbjct: 471 LLEGF 475



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 8/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNR 55
           +T +    N   Y   I+G+C   ++D+A      +    C  D   Y++L++G C   R
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGR 304

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYS 114
           ++EA +LF +M  +    + +TY  L+           A  LL+ ++     + ++  YS
Sbjct: 305 IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYS 364

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +V+ G  R  R+ EA + + ++  + + P  VTY+ LI+GLCK G +  A ++L  M  K
Sbjct: 365 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNK 424

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              P   +FN+VI       + D A   L
Sbjct: 425 RVEPSVGTFNSVIGALCRLGDMDEAWKLL 453



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 19/208 (9%)

Query: 15  YGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   + G C    ++ A           GI  DV  YS ++ G     R  EA E   +M
Sbjct: 327 YTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEM 386

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +A+ +    VTY+ LI D   K GR   AM +L+ +   + E ++  ++ VI  LCR+G 
Sbjct: 387 IARNVAPNAVTYSSLI-DGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGD 445

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK--------EKGCF 177
            +EA K L  ++  GL PG+VTY  L+ G  + G +  A +L   M+             
Sbjct: 446 MDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLV 505

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  +F+ +I+G     E D+A + +++
Sbjct: 506 PEQ-AFSALIRGLCKAREIDKAMAVVEE 532



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V  ++ +I+G C  N+LK+A+  F+KM  + +     TYN +++   + +    A  +L+
Sbjct: 7   VVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLK 65

Query: 100 TLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCK 157
            +   K    ++  YS VI+G C+ G  + A + L ++ +  G+ P VVTY  +++GLC+
Sbjct: 66  EMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCR 125

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G +  A +++ +MK KG  PD  +F+ +I G+    + D A    K+
Sbjct: 126 DGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKE 173



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +    N   Y   I+G+CK   +D A       + K +   V  ++S+I  LC   
Sbjct: 385 EMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLG 444

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAMALLQTLERDKYE 107
            + EA +L   M A G+   +VTY  L+ + + + GR       F  M            
Sbjct: 445 DMDEAWKLLVAMAAHGLEPGMVTYTTLL-EGFSRTGRMEIAYELFEVMRKKAKKSSSAAN 503

Query: 108 LNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           L  E  +S +I GLC+    ++A   +++L  +   P       +++GL + G   EA K
Sbjct: 504 LVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGK 563

Query: 167 LLVQMKEKG 175
           L+  + + G
Sbjct: 564 LINSISKVG 572



 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVT+ I+I+G CK   + +A     +M+E    P+  ++N V+ G      T +A   
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 203 LKK 205
           LK+
Sbjct: 64  LKE 66


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   +NG+C+ R++ SA          G+  D   Y++LI+G C   
Sbjct: 370 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 429

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L  A+E+   MVA+G+  + VTY  LI     K GR + A  +L  +     E +   Y
Sbjct: 430 ELDMAMEIKQNMVAEGVGLDEVTYTALI-SGLSKAGRSADAERVLGEMMEAGLEPDNTTY 488

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++VID  CR G  +   + L ++  KG  PGVVTYN+++NG CK G +  AD LL  M  
Sbjct: 489 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 548

Query: 174 KGCFPDSTSFNTVIQG 189
            G  PD  ++N ++ G
Sbjct: 549 IGVSPDDITYNILLDG 564



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  V+ I I+  CK  + ++ ++       +G+  D   Y++++NGLC    LK A 
Sbjct: 341 MKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSAS 400

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M + G+  + VTY  LI    +++    AM + Q +  +   L+   Y+ +I GL
Sbjct: 401 GIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGL 460

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR  +A + L ++ E GL P   TY ++I+  C+KG +    +LL +M+ KG  P  
Sbjct: 461 SKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGV 520

Query: 181 TSFNTVIQGF 190
            ++N ++ GF
Sbjct: 521 VTYNVIMNGF 530



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 42/229 (18%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+GMC+  ++D A        + G+  DV+ Y +LI GLC   R+++A  +F+KM  +G+
Sbjct: 282 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 341

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               V +  LI  + +K    + + L + +       +   Y+ +++GLCR    + A  
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKK--------------------------------- 158
            + ++   GL P  VTY  LI+G CK+                                 
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 159 --GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   +A+++L +M E G  PD+T++  VI  F  K +       LK+
Sbjct: 462 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 510



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 3/180 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D    +G+   V  ++++I+G+C    L  A  L  +M   G+T ++ TY  LI     +
Sbjct: 264 DEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ-GLCR 322

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A  + + +     + N  V++++ID  C+ G  E   +   ++ E+G+ P  VT
Sbjct: 323 VGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVT 382

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           YN ++NGLC+   +  A  ++V+M+  G  PD+ ++ T+I G+  + E D A   +K+NM
Sbjct: 383 YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAME-IKQNM 441



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+D A       + +G+ LD   Y++LI+GL    R  +A  +  +M
Sbjct: 417 TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEM 476

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+  +  TY  +I     K    + + LL+ ++    +  +  Y+++++G C++G+ 
Sbjct: 477 MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQM 536

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L+ +   G+ P  +TYNIL++G CK G + + ++L      KG  PD   + ++
Sbjct: 537 KNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTVPDLGVYTSI 593

Query: 187 IQGFLVKNETDR 198
           + G +VK +T +
Sbjct: 594 V-GEIVKKKTTK 604



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+++GI L+    + L++    F    EA   + +++  G+  E   +N L+ D      
Sbjct: 199 ALRRGIRLEPTSCTGLMS---RFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGE 255

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             SA  +   ++       +  ++ +I G+CR G  + A     ++SE G+ P V TY  
Sbjct: 256 LASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGA 315

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           LI GLC+ G I +A  +  +M  +G  P++  F  +I     K + +
Sbjct: 316 LIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 362



 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           QL + GL P    +N+L+  L + G +  A  +  +M+ +G      SFNT+I G     
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289

Query: 195 ETDRASSFLKK 205
           + D A +  ++
Sbjct: 290 DLDGAETLHRR 300


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
             E R KG       Y I I G+C+ ++   A+K        G+  ++  Y+ LING C 
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  AV LF+++ + G++  LVTYN LI    + +    A+ L++ +E      +   
Sbjct: 346 VRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVT 405

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++ID   R+   E+A +    + + GLVP V TY++L++GLC  G + EA KL   + 
Sbjct: 406 YTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLG 465

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E    P+S  +NT+I G+  +  + RA   L +
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE 498



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 8/204 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING C +R++DSA++        G+   +  Y++LI G      L  A++L 
Sbjct: 332 NIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  + I    VTY  LI           A  +   +E+     ++  YS+++ GLC  
Sbjct: 392 KEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVH 451

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K    L E  L P  V YN +I+G CK+G    A +LL +M + G  P+  SF
Sbjct: 452 GNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASF 511

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
            + I G L ++E  + +  L   M
Sbjct: 512 CSTI-GLLCRDEKWKEAELLLGQM 534



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +GI I G C+        R +    + G+  +V +Y++LI+G C    +  A  LF KM 
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMN 220

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TY+ L++  +++  +     + + ++R     N   Y+ +I   C  G  +
Sbjct: 221 RLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVD 280

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A K   ++ EKG+  GV+TYNILI GLC+     EA KL+ ++ + G  P+  ++N +I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 188 QGFLVKNETDRA 199
            GF    + D A
Sbjct: 341 NGFCDVRKMDSA 352



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 18  RINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           R+N   K  E+ S ++K G+  DV+ YS L++GLC    +KEA +LF  +    +    V
Sbjct: 415 RLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            YN +IH   ++   + A+ LL  + +     N+  +   I  LCR  +W+EA   L Q+
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534

Query: 137 SEKGLVPGVVTYNIL 151
              GL P V  Y ++
Sbjct: 535 INSGLKPSVSLYKMV 549



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL----IHDNWEKQGRFSAMAL 97
           +Y +++N     +   +A+     M+ +G      T+N L    I  N+  +  +    L
Sbjct: 91  LYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL 150

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              +  D Y   I     +I G C  G + +  + L  L E GL P VV Y  LI+G CK
Sbjct: 151 KSKVVLDAYSFGI-----MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCK 205

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            G +M A  L  +M   G  P+  +++ ++ GF 
Sbjct: 206 DGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFF 239


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 8/192 (4%)

Query: 22  MCKIREIDSAI-------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           +C   E+ SA+       K G   LDV   ++L++G C    + EA  +FD M   G+T 
Sbjct: 12  LCAAAEVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTP 71

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
             VTY  LIH  + +  R    AL+  + R   E N+  Y+ ++   CR G ++ AR   
Sbjct: 72  NEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLF 131

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           D++  KG+V  VV+YNILI GLC+ G + +A +L   M+ +G  P   +FN +I G+   
Sbjct: 132 DEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKA 191

Query: 194 NETDRASSFLKK 205
            +   A  F  +
Sbjct: 192 GKMSNALHFFNQ 203



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 3/195 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
            + V G R  G   + E+    + G+  +++ Y+ L+   C     K A  LFD+M  +G
Sbjct: 82  GYFVRGQREMGFALVGEMR---RGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKG 138

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +   +V+YN LI           A  L + + R+    ++  ++L+IDG  + G+   A 
Sbjct: 139 VVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNAL 198

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              +Q+   GL P VVTYN LI G C+   I  A +    MKE+   P   ++  +I  F
Sbjct: 199 HFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAF 258

Query: 191 LVKNETDRASSFLKK 205
             +NE DRA   L +
Sbjct: 259 AKENEMDRAFEMLSE 273



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 44/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   +   C+  E  SA         KG+  +V  Y+ LI GLC   +LK+A +LF
Sbjct: 107 NLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLF 166

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + M  +GI   +VT+N LI D + K G+ S A+     ++    + ++  Y+ +I G CR
Sbjct: 167 EAMRREGIHPSMVTFNLLI-DGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCR 225

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------ 152
                 A +    + E+ L P  VTY ILI                              
Sbjct: 226 ARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQS 285

Query: 153 -----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                + LC +G +M A KL   M  KG  P++  ++ +I G+
Sbjct: 286 YGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGY 328



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 77/154 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   V  Y+ LI G C    +  A+  F  M  + +    VTY  LI    ++     A
Sbjct: 208 GLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRA 267

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             +L  +E+   E++++ Y +++  LC  G+   ARK    +  KG+ P  V Y+++I G
Sbjct: 268 FEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYG 327

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             ++G   +A +L+++M++ G  P+  S+   I+
Sbjct: 328 YGREGSSYKALRLIMEMRKSGLIPNVASYCLTIR 361



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C+ R+I  AI+       + +      Y+ LI      N +  A E+  +M   G+
Sbjct: 220 IGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGL 279

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +Y  L+H    +     A  L Q+++    + N  +Y ++I G  R G   +A +
Sbjct: 280 EVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALR 339

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            + ++ + GL+P V +Y + I  LC +G   EA+ L+  M++ G
Sbjct: 340 LIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAG 383



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+ E+R       Y I I    K  E+D A        K G+ +DV  Y  L++ LC   
Sbjct: 238 DMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEG 297

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A +LF  M ++G+    V Y+ +I+    +   + A+ L+  + +     N+  Y 
Sbjct: 298 KMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYC 357

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGL 141
           L I  LC  G+ +EA   +  + + GL
Sbjct: 358 LTIRLLCNEGKCQEAEALIGDMEDAGL 384


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  K + H YGI I+  CK   + +A        K  +  + ++Y+ +++G    +R
Sbjct: 364 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 423

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVY 113
           L+EA+EL+ +++  GI    VTYN +I+   + +    A+ LL+ ++R K EL  +I  Y
Sbjct: 424 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 483

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++I GL +VG  E A   L ++ + G++P   TY  LI  L   G +  A +LL +M +
Sbjct: 484 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 543

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            G FPD  ++ T++Q  L +++ D A   L++ M
Sbjct: 544 AGIFPDDHTYGTLVQ-ILCRSDVDAAWDLLQEMM 576



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 104/199 (52%), Gaps = 12/199 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCT 52
           L E + +G   N   +G+ ++ +C  R++D A+          C   +F Y+ L++GLC 
Sbjct: 151 LREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCK 210

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
            ++++ A ++F++M+ +G   +++ Y+ LI D   K GR   A  L+  +          
Sbjct: 211 AHKVERACDVFEEMIRKGYKPDIIAYSSLI-DGLSKAGRVDEARKLVDLMVARGPPPTAV 269

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++ GLC+ GR +EA K + ++  + L P V TY+ ++ G    G + +A  ++ +M
Sbjct: 270 AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEM 329

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            ++ C PD+ S+   I+  
Sbjct: 330 ADRDCAPDTISYTMFIEAL 348



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-L 97
           D   Y+  I  L +  R +EA ++F+ MV +G   ++ TY  +I DN+ K+G  +A   +
Sbjct: 337 DTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII-DNFCKEGSMAAATHV 395

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ +++   + N  +Y++++DG  +  R EEA +   ++ + G++P  VTYN +IN LCK
Sbjct: 396 LRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCK 455

Query: 158 KGMIMEADKLLVQMKEKG--CFPDSTSFNTVIQGF 190
              + EA +LL +M+ +     P   +++ +I G 
Sbjct: 456 LKKMDEALELLREMQRRKEELEPSIVTYSMIIHGL 490



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 80/152 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  ++ L+ G    +  +    L  +M ++GIT+   T+  ++     ++    A++  
Sbjct: 127 NVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYF 186

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            ++  +K E  +  Y++++DGLC+  + E A    +++  KG  P ++ Y+ LI+GL K 
Sbjct: 187 NSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKA 246

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + EA KL+  M  +G  P + ++ +++ G 
Sbjct: 247 GRVDEARKLVDLMVARGPPPTAVAYTSIVAGL 278



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   + G+CK   I  A+K         +   V  YS ++ G     ++++A  + ++M
Sbjct: 270 AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEM 329

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +    + ++Y   I   +    R  A  + +T+     + ++  Y ++ID  C+ G  
Sbjct: 330 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSM 389

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A   L  + +  + P    Y ++++G  K   + EA +L  ++ + G  P + ++NTV
Sbjct: 390 AAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTV 449

Query: 187 IQGFLVKNETDRASSFLKK 205
           I       + D A   L++
Sbjct: 450 INALCKLKKMDEALELLRE 468



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           +A + G    +F  +SL+  L     L +A+  F   +++     + ++N L+     + 
Sbjct: 86  AATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISE---PNVSSFNILLRGFAARD 142

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
                 ALL+ ++      N   + +++  LC     ++A    + +S     P + TY 
Sbjct: 143 DFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYT 202

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L++GLCK   +  A  +  +M  KG  PD  +++++I G       D A
Sbjct: 203 VLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEA 252


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 7/207 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +T+  F  +   YGI ++G CK   I+ ++       +KG  LD F YS++IN LC  ++
Sbjct: 85  MTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAMINALCKESK 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++AV + + M+  G       YN LI        R  A+ + + +       NI  YS+
Sbjct: 145 LEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSI 204

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+  R+ EA   + ++ EKGL P V+TY++L+ GLC    +  A +L  Q+ +KG
Sbjct: 205 LIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKG 264

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             PD    N +I G     +T  A S 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQLALSL 291



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   I G+    + D A++            ++  YS LI+GLC   R  EA +
Sbjct: 161 KPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSILIDGLCKGERFGEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+   ++TY+ L+           A+ L   + +  ++ ++++++++I GLC
Sbjct: 221 LVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +VT N L+ G  K G +  A  +  ++ +    PD  
Sbjct: 281 SVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILKNELQPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAIWFL 362



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 97/190 (51%), Gaps = 8/190 (4%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+  +ID A       ++  +  D  VY++++NG     R+K+  EL++ M  +G +  +
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSV 59

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            ++N ++   ++ +    AM++ + + +  +  +   Y +++ G C+ G   ++   L+ 
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEI 119

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
             +KG V     Y+ +IN LCK+  + +A  +L  M   GC P++  +N +I+G +  ++
Sbjct: 120 AEQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASK 179

Query: 196 TDRASSFLKK 205
            D A    ++
Sbjct: 180 RDDAVRIFRE 189



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I+G+CK      A       ++KG+   V  YS L+ GLC  ++++ A++L+
Sbjct: 198 NIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLW 257

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++  +G   ++  +N LIH          A++L   + R     N+   + +++G  + 
Sbjct: 258 NQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKD 317

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G    A     ++ +  L P +++YNI + GLC    I +A   L     K   P
Sbjct: 318 GNVRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVRKKIIP 372



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 8/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRING------MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           D+ E +   +  VY   +NG      M    E+   + +     V  ++ ++ GL    +
Sbjct: 15  DIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGSRSVASFNIMMRGLFDNRK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA+ +++ M   G   + VTY  L+H  + K G  + ++ +L+  E+    L+   YS
Sbjct: 75  VEEAMSIWELMTKSGFVEDSVTYGILVH-GFCKNGYINKSLHILEIAEQKGGVLDAFAYS 133

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+ LC+  + E+A   L+ +   G  P    YN LI GL       +A ++  +M   
Sbjct: 134 AMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTT 193

Query: 175 GCFPDSTSFNTVIQGF 190
            C P+  +++ +I G 
Sbjct: 194 DCPPNIATYSILIDGL 209



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y + + G+C   +++ A+       KKG   DV +++ LI+GLC+  
Sbjct: 224 EMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A+ L+  M        LVT N L+   ++     +A+ +   + +++ + +I  Y+
Sbjct: 284 KTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILKNELQPDIISYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R  +A   L     K ++P  +T
Sbjct: 344 ITLKGLCSCNRISDAIWFLHDAVRKKIIPTKIT 376


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 7/207 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAV 60
           F+ N  VY   I+G C   E++ A+K    +D       V  Y+ LI+GLC   +++ A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +MV  G+   +VTY  LI     +     A  LL  +E +    N   +S++ID L
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDAL 327

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + EEA+  L  L +KG+    V Y  LI+GLCK G I  AD+L+ +M  +G  PD+
Sbjct: 328 CKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDA 387

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            S++++I G   + +  +A+  L+  M
Sbjct: 388 HSYSSLIDGLCRQKKLSQATLMLEDMM 414



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 108/184 (58%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I+ +CK  +++ A       +KKG+ ++  VY+SLI+GLC   ++  A EL  KM+
Sbjct: 320 FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G   +  +Y+ LI D   +Q + S A  +L+ +     + +   Y+++ID L R    
Sbjct: 380 SEGFVPDAHSYSSLI-DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS 438

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E  +K  D++   G+ P +VTY + +   C++G + +A+ ++VQM ++G FP+  ++NT+
Sbjct: 439 EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498

Query: 187 IQGF 190
           I+G+
Sbjct: 499 IRGY 502



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L ++  K N  VY   I+G+CK  +ID+A       I +G   D   YSSLI+GLC   +
Sbjct: 343 LVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKK 402

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  + + M+ +GI A  VTY  +I +   + G      +   +       +I  Y++
Sbjct: 403 LSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTV 462

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +   C  GR E+A   + Q+ ++G+ P +VTYN LI G    G++ +A      M  KG
Sbjct: 463 FVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKG 522

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             P+  S+  +++  + K+ +D +    K
Sbjct: 523 WKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN  C   +I +A       +  G+  D + Y+S + G C    L  A  +F
Sbjct: 71  NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVF 130

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +G      TY  L+H          AM +   +  D    +  VY+ ++ GLC  
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEA 190

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA   L++    G  P +V YN LI+G C  G +  A K+   M    C P+  ++
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250

Query: 184 NTVIQGFLVKNETDRA 199
             +I G     + +RA
Sbjct: 251 TELIHGLCKSGKVERA 266



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G     F Y++L++GL     ++EA+ +F  M A     +   Y  ++H   E      
Sbjct: 136 RGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEE 195

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  LL+    + +E NI VY+ +IDG C  G  E A K  + +      P V TY  LI+
Sbjct: 196 AEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIH 255

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           GLCK G +  A  L  +M E G  P+  ++  +IQG
Sbjct: 256 GLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQG 291



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+  L       +   L  +M A+     L TY  LI+         +A   L +L  
Sbjct: 45  NTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQHLTSLLH 100

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                +   Y+  + G CR G    A +    +  +G +    TY  L++GL   GM+ E
Sbjct: 101 AGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVRE 160

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  + V M+   C PD+  + T++ G 
Sbjct: 161 AMTVFVGMRADSCAPDTHVYATMVHGL 187



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 74/208 (35%), Gaps = 58/208 (27%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI---------DSAIKKGICLDVFVYSSLINGLCT 52
           D+ E+  + +   Y I I+ +  +RE+         D  I  GI  D+  Y+  +   C 
Sbjct: 412 DMMEKGIQASPVTYTIIIDEL--VREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCE 469

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R+++A  +  +MV +G+   LVTYN LI                              
Sbjct: 470 EGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529

Query: 84  ------------------DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
                             D W+         LL+ +   +  L  ++YS  I  LCRV R
Sbjct: 530 YTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDR 589

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILIN 153
            EEA+     +    L P    Y  +I+
Sbjct: 590 LEEAKHFFMGMQNANLTPSEDVYTSIID 617


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LDV   ++L+NG C    + EA  +FD+M   G+    VTY  L+H  +    R    AL
Sbjct: 36  LDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFAL 95

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + + R   E N+  Y+ +I   CR G +E AR   D++  +G+V  VV+YN LI GLC+
Sbjct: 96  FEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCR 155

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G + +A KLL  M+ +G  P   +FN ++ G+    +   A  F  +
Sbjct: 156 HGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +  +G R  G     E+    + G+  +++ Y+ LI   C     + A  LFD+M  +GI
Sbjct: 83  YFTHGQREKGFALFEEMR---RGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGI 139

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +V+YN LI         + A  LL  +  +    +I  ++L++DG  + G+   A  
Sbjct: 140 VRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALP 199

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +Q+   G  P  VTYN+LI G C+   +  A++ L  MKE+G  P   ++  +I  F 
Sbjct: 200 FFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259

Query: 192 VKNETDRASSFL 203
            +N   +A   L
Sbjct: 260 RENHMGKAFEIL 271



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           F L E+  +G    N + Y   I   C+  E + A         +GI  +V  Y++LI G
Sbjct: 93  FALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAG 152

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL 108
           LC   +L +A +L D M  +G    ++T+N L+ D + K G+ S A+     ++   ++ 
Sbjct: 153 LCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV-DGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y+++I G CR      A + L  + E+GL P  VTY ILI+   ++  + +A ++L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVK 193
             M++ G   D+ ++  +++   ++
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCME 296



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G       Y+ LI G C    +  A      M  +G+    VTY  LI D++ ++     
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI-DSFARENHMGK 266

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  +E+   E++   Y +++  LC  G  ++ARK    + EKG+ P  V Y+++I 
Sbjct: 267 AFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIY 326

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  ++G   +A KL+++M++KG  P+S S+   I+     ++   A + L
Sbjct: 327 GYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALL 376



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y + I G C+ R++  A +       +G+      Y+ LI+     N + +A 
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+   M   G+  +  TY  L+     +     A  L Q++     E +  +Y ++I G 
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGY 328

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            R G   +A K + ++ +KGL+P   +Y + I  LCK     EA+ LL  M+
Sbjct: 329 GREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 13/194 (6%)

Query: 10  GNFH----VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           GN H    ++ I I G+CK+  I+ A         KG   D F YSSLI+G      +  
Sbjct: 719 GNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDV 778

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A +L D M++ G+T  +VTYN LI+    K G  S A++L + L       N   Y+ +I
Sbjct: 779 AFDLRDTMLSVGLTPNIVTYNSLIY-GLCKSGELSRAVSLFKKLWTKGISPNAITYNTLI 837

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D  C+ G   EA K   ++ E+G+ P V TY+ILINGLC +G + EA KLL QM E    
Sbjct: 838 DKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVD 897

Query: 178 PDSTSFNTVIQGFL 191
           P+  ++ T+IQG++
Sbjct: 898 PNYVTYWTLIQGYV 911



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ + R + N  VY I ING CK+  +  A          G+  D + Y+SL++G C   
Sbjct: 374 EMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKG 433

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A E ++ M+  G  A  +TYN L+           A+ L   + +     N    S
Sbjct: 434 LMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCS 493

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG  + G+ E+A     +   +GL     T+N +INGLCK   + EA++L+ +MK+ 
Sbjct: 494 TLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQW 553

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C PD  ++ T+  G+    + DRAS  L +
Sbjct: 554 RCPPDIITYRTLFSGYCKIGDMDRASRILNE 584



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 104/192 (54%), Gaps = 8/192 (4%)

Query: 16  GIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            I     CK++ +  A+       K G+ +++  Y +++NG C   +  +A  + D +  
Sbjct: 247 AIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPG 306

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE-VYSLVIDGLCRVGRWE 127
           +G +  +VTY  L+     ++    A  ++Q + ++K  +  E V+  VI+G C++GR E
Sbjct: 307 RGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRME 366

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + L+++ +  L   +  YNI+ING CK G ++EA  +L +M   G  PD+ S+N+++
Sbjct: 367 DAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLV 426

Query: 188 QGFLVKNETDRA 199
            G+  K   ++A
Sbjct: 427 DGYCKKGLMNKA 438



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 10/215 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKG--ICLDVFVYSSLINGLCTF 53
            L  + F  N   Y + + G C  + ++ A      I+K   + +D  V+ ++ING C  
Sbjct: 303 SLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQM 362

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
            R+++A  L ++MV   +   L  YN +I + + K GR   A  +L  +       +   
Sbjct: 363 GRMEDAARLLNEMVDSRLQVNLFVYNIMI-NGYCKLGRMVEAHNILHEMTGVGVRPDTYS 421

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++DG C+ G   +A +  + +   G     +TYN L+ G C  G I +A +L   M 
Sbjct: 422 YNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLML 481

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +KG  P+  S +T++ GF    +T++A +  K+ +
Sbjct: 482 KKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETL 516



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  +   ++++INGLC   R+ EA EL DKM       +++TY  L     +    
Sbjct: 516 LARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDM 575

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +L  LE   +   IE ++ +I G     +  +    L ++S +GL P  V Y  L
Sbjct: 576 DRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGAL 635

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I G CK+G +  A  L ++M EKG  P+    ++++  F  K + D A+  L+
Sbjct: 636 IAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQ 688



 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 16/212 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F+++ +    N   YG  I G CK  ++ +A       I+KG+  ++F+ SSL++     
Sbjct: 618 FEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRK 677

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +  EA  +   +V   +        P I     + G+ +    + T+    +     ++
Sbjct: 678 GKFDEANLVLQNLVGTDMI-------PDISAPRLEIGKVAN--FIDTVAGGNHHSAKIMW 728

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++VI GLC++GR E+A+  L  L +KG V    TY+ LI+G    G +  A  L   M  
Sbjct: 729 NIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLS 788

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++N++I G     E  RA S  KK
Sbjct: 789 VGLTPNIVTYNSLIYGLCKSGELSRAVSLFKK 820



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           +S++N L     L   V +F++M   G   +  T   +     + +G   A+  ++ + +
Sbjct: 212 NSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTK 271

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              E+N+  Y  V++G C VG+  +AR+ LD L  +G  P +VTY +L+ G C +  + E
Sbjct: 272 MGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEE 331

Query: 164 ADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A+ ++ ++ K K    D   F  VI G+      + A+  L +
Sbjct: 332 AEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNE 374



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 42/154 (27%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+CK  E+  A+        KGI  +   Y++LI+  C    + EA +L 
Sbjct: 794 NIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLK 853

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +GI   + T                                   YS++I+GLC  
Sbjct: 854 QRMIEEGIHPTVFT-----------------------------------YSILINGLCTQ 878

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           G  EEA K LDQ+ E  + P  VTY  LI G  +
Sbjct: 879 GYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 10/189 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G+CK R++D A+      KK  C  D   Y+ LI+GLC    ++ A   F
Sbjct: 160 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFF 219

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA--LLQTLERDKYELNIEVYSLVIDGLC 121
           D+M+  G   ++ TYN LI   + K G   A +  L Q    +   ++I  Y+ ++D L 
Sbjct: 220 DEMLEAGCKPDVYTYNILI-SGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLA 278

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  + EEA   +++++  G  P + TYN L+NGLCK G + EA  LL ++ + GC PD  
Sbjct: 279 KNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 338

Query: 182 SFNTVIQGF 190
           ++ ++I G 
Sbjct: 339 TYTSLIDGL 347



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T          Y   +NG+CK+  ++ AI         G   DV  Y+SLI+GL    R
Sbjct: 12  ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 71

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +LF +M  +G+  + V Y  LI +  +      A ++ +T+       ++   S 
Sbjct: 72  SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLST 131

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGL + GR   A +    +  +GL P  V Y+ LI+GLCK   +  A ++L QMK+  
Sbjct: 132 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 191

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C PD+ ++N +I G     + + A +F 
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFF 219



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T          Y   +NG+CK+  ++ AI         G   DV  Y+SLI+GL    R
Sbjct: 293 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 352

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +LF +M  +G+  + V Y  LI +  +      A ++ +T+       ++   S 
Sbjct: 353 SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLST 412

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGL + GR   A +    +  +GL P  V Y+ LI+GLCK   +  A ++L QMK+  
Sbjct: 413 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 472

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C PD+ ++N +I G     + + A +F 
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFF 500



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV   S++I+GL    R+  AV +F  M A+G+    V Y+ LIH   + +    A
Sbjct: 402 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 461

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +L  +++     +   Y+++IDGLC+ G  E AR   D++ E G  P V TYNILI+G
Sbjct: 462 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 521

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            CK G    A  +   M    C  +  ++  +I G   + +  +AS + +
Sbjct: 522 FCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQ 571



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK--------GICLDVFVYSSLINGLCTF 53
           ++ E   K + + Y I I+G CK    D+A           G  +D+  Y+++++ L   
Sbjct: 221 EMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKN 280

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +++EAV L +K+ A G T  + TYN L+ +   K GR   A+ LL+ +  +    ++  
Sbjct: 281 KKIEEAVALMEKITANGCTPTIATYNALL-NGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 339

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDGL +  R  EA K   +++ +GL    V Y  LI  L + G I +A  +   M 
Sbjct: 340 YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 399

Query: 173 EKGCFPDSTSFNTVIQGF 190
             GC PD  + +T+I G 
Sbjct: 400 SHGCVPDVVTLSTMIDGL 417



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV   S++I+GL    R+  AV +F  M A+G+    V Y+ LIH   + +    A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +L  +++     +   Y+++IDGLC+ G  E AR   D++ E G  P V TYNILI+G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 155 LCKKGMIMEADKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNE 195
            CK G    A   L Q     GC  D  ++  ++  +L KN+
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVD-WLAKNK 281



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K   I +A++       +G+  +  VYS+LI+GLC   ++  A+E+  +M     
Sbjct: 414 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 473

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           T + +TYN LI D   K G   +A A    +     + ++  Y+++I G C+ G  + A 
Sbjct: 474 TPDTITYNILI-DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 532

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              D +S       VVTY  LI+GLCK+  + +A      MKE+G
Sbjct: 533 GVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+AL++ +  +     I  Y+ +++GLC++GR EEA   L ++ + G  P VVTY  LI+
Sbjct: 5   AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 64

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GL K+    EA KL  +M  +G   D+  +  +I+  L   +  +ASS  K
Sbjct: 65  GLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 115



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + EEA   +++++  G  P + TYN L+NGLCK G + EA  LL ++ + GC PD  ++ 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 185 TVIQGF 190
           ++I G 
Sbjct: 61  SLIDGL 66


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 7/207 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAV 60
           F+ N  VY   I+G C   E++ A+K    +D       V  Y+ LI+GLC   +++ A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF +MV  G+   +VTY  LI     +     A  LL  +E +    N   +S++ID L
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDAL 327

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + EEA+  L  L +KG+    V Y  LI+GLCK G I  AD+L+ +M  +G  PD+
Sbjct: 328 CKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDA 387

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            S++++I G   + +  +A+  L+  M
Sbjct: 388 HSYSSLIDGLCRQKKLSQATLMLEDMM 414



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 108/184 (58%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I+ +CK  +++ A       +KKG+ ++  VY+SLI+GLC   ++  A EL  KM+
Sbjct: 320 FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G   +  +Y+ LI D   +Q + S A  +L+ +     + +   Y+++ID L R    
Sbjct: 380 SEGFVPDAHSYSSLI-DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS 438

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E  +K  D++   G+ P +VTY + +   C++G + +A+ ++VQM ++G FP+  ++NT+
Sbjct: 439 EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498

Query: 187 IQGF 190
           I+G+
Sbjct: 499 IRGY 502



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            L ++  K N  VY   I+G+CK  +ID+A       I +G   D   YSSLI+GLC   
Sbjct: 342 SLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A  + + M+ +GI A  VTY  +I +   + G      +   +       +I  Y+
Sbjct: 402 KLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYT 461

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + +   C  GR E+A   + Q+ ++G+ P +VTYN LI G    G++ +A      M  K
Sbjct: 462 VFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGK 521

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P+  S+  +++  + K+ +D +    K
Sbjct: 522 GWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN  C   +I +A       +  G+  D + Y+S + G C    L  A  +F
Sbjct: 71  NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVF 130

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +G      TY  L+H          AMA+   +  D    +  VY+ ++ GLC  
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA   L++    G  P +V YN LI+G C  G +  A K+   M    C P+  ++
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250

Query: 184 NTVIQGFLVKNETDRA 199
             +I G     + +RA
Sbjct: 251 TELIHGLCKSGKVERA 266



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G     F Y++L++GL     ++EA+ +F  M A     +   Y  ++H   E      
Sbjct: 136 RGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEE 195

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  LL+    + +E NI VY+ +IDG C  G  E A K  + +      P V TY  LI+
Sbjct: 196 AEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIH 255

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           GLCK G +  A  L  +M E G  P+  ++  +IQG
Sbjct: 256 GLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQG 291



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+  L       +   L  +M A+     L TY  LI+         +A   L +L  
Sbjct: 45  NTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQHLTSLLH 100

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                +   Y+  + G CR G    A +    +  +G +    TY  L++GL   GM+ E
Sbjct: 101 AGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVRE 160

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  + V M+   C PD+  + T++ G 
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGL 187


>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
          Length = 423

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 10/206 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I +  +C   ++D A+       ++G+  D   YS+L++GL   ++L  
Sbjct: 193 RRLAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLVKHDQLDN 252

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVYSLV 116
           A++L D+M   G+ A+ V YN L+   + K G F  A+ + + L RD     N+  Y ++
Sbjct: 253 ALDLLDEMPDYGVQADAVCYNALLSGCF-KTGMFEKAIKVWEQLVRDPGASPNLATYKVM 311

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC++GR++EA +   ++      P  VTY ILI+GLC+ G +  A ++   M + G 
Sbjct: 312 LDGLCKLGRFKEAGEVWSRMVANNHQPDTVTYGILIHGLCRSGDVDSAARVYSDMVKAGL 371

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSF 202
             D   +N++I+GF     T  A  F
Sbjct: 372 VLDVAVYNSLIKGFCKVGRTGEAWKF 397



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 15  YGIRINGMC---------KIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLK 57
           YG++ + +C         K    + AIK         G   ++  Y  +++GLC   R K
Sbjct: 263 YGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFK 322

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA E++ +MVA     + VTY  LIH         SA  +   + +    L++ VY+ +I
Sbjct: 323 EAGEVWSRMVANNHQPDTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVAVYNSLI 382

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            G C+VGR  EA K  D     G +  + TYN+++ GL   G
Sbjct: 383 KGFCKVGRTGEAWKFWDSTGFSG-IRQITTYNVMMKGLLDSG 423



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNILINGLCKKGMIMEAD 165
           I  ++ ++D   R  R+ EA      LS     + L P + TYNI++  LC +G +  A 
Sbjct: 160 IRSHNALLDAFVRARRYSEADAFFASLSHGACGRRLAPNLQTYNIILRSLCARGDVDRAV 219

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            L   ++ +G  PD  +++T++ G +  ++ D A   L
Sbjct: 220 SLFSSLRRRGVAPDRVTYSTLMSGLVKHDQLDNALDLL 257


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+   +D+A +      +  D + Y+ LI  LC   R+ +A+ L D M+ +
Sbjct: 112 AYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRR 171

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+    +  G   AMA+L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 172 GCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 231

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R  L++L   G  P  V+Y  L+ GLC      + ++L  +M EK C P+  +F+ +I+ 
Sbjct: 232 RDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 291

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 292 FCRGGMVERAIQVLQQ 307



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R + +A   G  +DVF Y++L+ G C +  L  A  L   M    +  +  TY PLI   
Sbjct: 96  RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVL 152

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            ++     A++LL  + R   + N+  Y+++++ +C+   +E+A   LD++  KG  P +
Sbjct: 153 CDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNI 212

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTYN++ING+C++G + +A  LL ++   GC PD+ S+ T+++G       D       +
Sbjct: 213 VTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAE 272

Query: 206 NM 207
            M
Sbjct: 273 MM 274



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 104/248 (41%), Gaps = 45/248 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D   Y++L+ GLC 
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCA 259

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R  +  ELF +M+ +      VT++ LI                              
Sbjct: 260 SKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTL 319

Query: 84  -----DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                ++  KQGR   A   L  +       +   Y+ V+ GLCR  RW +A++ L ++ 
Sbjct: 320 CNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV 379

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                P  VT+N  I  LC+KG+I +A  L+ QM+E GC     ++N ++ GF V+   D
Sbjct: 380 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHID 439

Query: 198 RASSFLKK 205
            A    + 
Sbjct: 440 SALELFRS 447



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C    +D+A       + +    +V  ++ L+N  C    L EA+E
Sbjct: 451 KPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIE 510

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+TYN L     +      A+ LL  L       ++  +S +I  L 
Sbjct: 511 LVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILS 570

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R EEA +      + G+ P  + YN ++ GLCK+  I  A   L  M   GC P+ +
Sbjct: 571 KEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNES 630

Query: 182 SFNTVIQGF 190
           ++  +I+G 
Sbjct: 631 TYIILIEGL 639



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 4/194 (2%)

Query: 14  VYGIRINGMCKIREIDSAI---KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   +NG C    IDSA+   +   C  +   Y++L+ GLC   RL  A EL  +M+ +
Sbjct: 424 TYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHR 483

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
                +VT+N L++   +K     A+ L++ +       N+  Y+ + DG+ +    E+A
Sbjct: 484 DCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDA 543

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  L  KG+ P V+T++ +I  L K+  + EA ++    ++ G  P +  +N ++ G
Sbjct: 544 LELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLG 603

Query: 190 FLVKNETDRASSFL 203
              ++E D A  FL
Sbjct: 604 LCKRHEIDNAIDFL 617



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 4/168 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+   + G  + V  Y++L+NG C    +  A+ELF  M  +  T   +TY  L+     
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNT---ITYTTLLTGLCN 466

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +   +A  L+  +       N+  ++++++  C+ G  +EA + ++Q+ E G  P ++T
Sbjct: 467 AERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLIT 526

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           YN L +G+ K     +A +LL  +  KG  PD  +F+++I G L K +
Sbjct: 527 YNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSII-GILSKED 573



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KG+  DV  +SS+I  L   +R++EA+++F      G+  + + YN ++    ++   
Sbjct: 551 VSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEI 610

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
            +A+  L  +  +    N   Y ++I+GL R G  +EA+  L  L  +G+V
Sbjct: 611 DNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGVV 661



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           +  RD    ++ + + +I  LCR GR  +A + L      G    V  YN L+ G C+ G
Sbjct: 65  SASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYG 124

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +  A +L+  M      PD+ ++  +I+    +     A S L
Sbjct: 125 HLDAARRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADALSLL 165


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   I  +C        +   D  + +G    V  YS L++  C  +  K+AV
Sbjct: 156 FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAV 215

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L D+M ++G   ++VTYN LI+    +     A+ +L +L     + +   Y+ V+  L
Sbjct: 216 VLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSL 275

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   RWEEA K L ++      P  VT+N +I  LC+KG +  A K+L QM E GC PD 
Sbjct: 276 CSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDI 335

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++++++ G   +   D A   LK+
Sbjct: 336 ITYSSIMDGLCKERRVDEAIKLLKE 360



 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   +NG C+   ID+A +         D F Y+ LI  LC    + +A+ +FD M+ +
Sbjct: 130 TYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHR 189

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G +  +VTY+ L+    ++ G   A+ LL  +     E +I  Y+++I+ +C  G   EA
Sbjct: 190 GCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEA 249

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L+ L   G  P  VTY  ++  LC      EADKLL +M    C PD  +FN VI  
Sbjct: 250 LKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITS 309

Query: 190 FLVKNETDRASSFLKK 205
              K    RA+  L +
Sbjct: 310 LCQKGFVGRATKVLAQ 325



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + IN MC   ++  A+K        G   D   Y+ ++  LC+
Sbjct: 218 LDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCS 277

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R +EA +L  KM +     + VT+N +I    +K     A  +L  +       +I  
Sbjct: 278 SERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIIT 337

Query: 113 YSLVIDGLCRVGRWEEARKKLDQL----SEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           YS ++DGLC+  R +EA K L +L      K  +P  VT+N +I  LC+KG+   A K++
Sbjct: 338 YSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVV 397

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKN 194
            +M E GC PD T++N ++ GFL K+
Sbjct: 398 DEMSEHGCIPDITTYNCIVDGFLCKS 423



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +  Y++++NG C    +  A  + D +       +  TYNPLI     +     A+A+  
Sbjct: 128 IITYNTMVNGYCRAGNIDAARRMIDSV---PFAPDTFTYNPLIRALCVRGCVLDALAVFD 184

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +       ++  YS+++D  C+   +++A   LD++  KG  P +VTYN+LIN +C +G
Sbjct: 185 DMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQG 244

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + EA K+L  +   GC PD+ ++  V++        + A   L K
Sbjct: 245 DVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTK 290



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 12/213 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-----------KGICLDVFVYSSLINGLC 51
           ++E     +   Y   ++G+CK R +D AIK           K    D   ++++I  LC
Sbjct: 326 MSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLC 385

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
                  A+++ D+M   G   ++ TYN ++     K  +   A+ LL  +  +    + 
Sbjct: 386 QKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDT 445

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y  +  GL R    E A     ++   GL P  + YN ++ GLCKK     A      
Sbjct: 446 TTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAY 505

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M   GC PD +++  +++G   +   + A   L
Sbjct: 506 MVSNGCMPDESTYIILVEGIAYEGFLEEAKELL 538



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGM----CKIRE----IDSAIKKGICLDVFVYSSLINGLCTF 53
           +++E     +   Y   ++G     CK  E    ++  +  G+C D   Y SL  GL   
Sbjct: 399 EMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSRE 458

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           + ++ A+ +F ++ A G++ + + YN ++    +K     A+     +  +    +   Y
Sbjct: 459 DEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518

Query: 114 SLVIDGLCRVGRWEEARKKLDQLS 137
            ++++G+   G  EEA++ L  LS
Sbjct: 519 IILVEGIAYEGFLEEAKELLGNLS 542



 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + G  + A + +  +S  G  P V+  NILI  LC  G + +A++++  +      P
Sbjct: 70  GLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALG-----P 124

Query: 179 DST--SFNTVIQGFLVKNETDRA 199
            +T  ++NT++ G+      D A
Sbjct: 125 SATIITYNTMVNGYCRAGNIDAA 147


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 9/207 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKE 58
           + + N  ++ I +   CK  +++SA++        +    +V  YS+LI+GLC   RLKE
Sbjct: 194 KVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKE 253

Query: 59  AVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           A+ELF++MV++  I  + +TY+ LI           A  +++ +  +  + N+  YS+++
Sbjct: 254 AIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLM 313

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +G C+ GR EEA++  D++   GL P  V Y  LIN  C  G I EA +LL +M E  C 
Sbjct: 314 NGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCK 373

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
            D+ +FN +++G   +   D A   L+
Sbjct: 374 ADAVTFNVLLKGLCREGRFDEALRMLE 400



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 9/182 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G C   + D A K        G   +VF YS L+NG C   RL+EA E+FD+M
Sbjct: 273 TYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEM 332

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G+  + V Y  LI + +   GR   AM LL+ +   K + +   +++++ GLCR GR
Sbjct: 333 KSSGLKPDTVGYTTLI-NCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGR 391

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++EA + L+ L+ +G+     +Y I++N LC+KG + ++  LL  M  +G  P   + N 
Sbjct: 392 FDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNE 451

Query: 186 VI 187
           ++
Sbjct: 452 LL 453



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 15  YGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + +NG CK       +E+ D     G+  D   Y++LIN  C   R+ EA+EL  +M 
Sbjct: 309 YSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMT 368

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                A+ VT+N L+     ++GRF  A+ +L+ L  +   LN   Y +V++ LC+ G  
Sbjct: 369 EMKCKADAVTFNVLL-KGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGEL 427

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E++   L  +  +G VP   T N L+  LC+ GM+  A   L  + + G  P+  S+  +
Sbjct: 428 EKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHL 487

Query: 187 IQ 188
           I+
Sbjct: 488 IE 489



 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++TE + K +   + + + G+C+    D A++       +G+ L+   Y  ++N LC   
Sbjct: 366 EMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKG 425

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+++  L   M+++G      T N L+    E     +A+  L  L +  +    + ++
Sbjct: 426 ELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWA 485

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEK 139
            +I+ +CR  +     + +D+L EK
Sbjct: 486 HLIEYICRERKLLFVFELVDELVEK 510


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 8/192 (4%)

Query: 22  MCKIREIDSAI-------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           +C   ++ SA+       K G   LDV   ++L+NG C    + EA  +FD+M   G+  
Sbjct: 12  LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
             VTY  L+H  +    R    AL + + R   E N+  Y+ +I   CR G +E AR   
Sbjct: 72  NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           D++  +G+V  VV+YN LI GLC+ G + +A KLL  M+ +G  P   +FN ++ G+   
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKA 191

Query: 194 NETDRASSFLKK 205
            +   A  F  +
Sbjct: 192 GKMSNALPFFNQ 203



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +  +G R  G     E+    + G+  +++ Y+ LI   C     + A  LFD+M  +GI
Sbjct: 83  YFTHGQREKGFALFEEMR---RGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGI 139

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +V+YN LI         + A  LL  +  +    +I  ++L++DG  + G+   A  
Sbjct: 140 VRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALP 199

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +Q+   G  P  VTYN+LI G C+   +  A++ L  MKE+G  P   ++  +I  F 
Sbjct: 200 FFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259

Query: 192 VKNETDRASSFL 203
            +N   +A   L
Sbjct: 260 RENHMGKAFEIL 271



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)

Query: 1   FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLING 49
           F L E+  +G    N + Y   I   C+  E + A         +GI  +V  Y++LI G
Sbjct: 93  FALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAG 152

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL 108
           LC   +L +A +L D M  +G    ++T+N L+ D + K G+ S A+     ++   ++ 
Sbjct: 153 LCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV-DGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y+++I G CR      A + L  + E+GL P  VTY ILI+   ++  + +A ++L
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
             M++ G   D+ ++  +++  
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRAL 293



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G       Y+ LI G C    +  A      M  +G+    VTY  LI D++ ++     
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI-DSFARENHMGK 266

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  +E+   E++   Y +++  LC  G  ++ARK    + EKG+ P  V Y+++I 
Sbjct: 267 AFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIY 326

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  ++G   +A KL+++M++KG  P+S S+   I+     ++   A + L
Sbjct: 327 GYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALL 376



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y + I G C+ R++  A +       +G+      Y+ LI+     N + +A 
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+   M   G+  +  TY  L+     +     A  L Q++     E +  +Y ++I G 
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGY 328

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            R G   +A K + ++ +KGL+P   +Y + I  LCK     EA+ LL  M+
Sbjct: 329 GREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 15/209 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + + G+CK    D          ++G   DV +Y++L+NGLC   RL EA+EL 
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV 229

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+  G    +VTYN L+      +    A  L+Q +       ++  Y+ VI GLCR 
Sbjct: 230 QLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRD 289

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD-------KLLVQMKEKGC 176
            R ++A+  L Q+     VP V+TY+ +I+GLCK   + +AD       ++L  MK+ GC
Sbjct: 290 ARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRV-DADWKLEAACEILEMMKQTGC 348

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P++ ++  VI+G     ++ +A + L++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRR 377



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 107/204 (52%), Gaps = 10/204 (4%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           E+R   N   YG  I+G+CK  ++D A +       +GI   V V++ +I GLC   R  
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFG 82

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYEL-NIEVYSL 115
           +A+  F  +     T +++T+N L+ D   K GR   A  + +++      L N+  Y+ 
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILV-DALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTT 141

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GLC+ G+ + A + LD ++E G  P V+TY++L+ GLCK G   +   LL +M  +G
Sbjct: 142 VINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD   +NT++ G       D A
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEA 225



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)

Query: 37  CL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-A 94
           CL +V  Y+++INGLC   +L  A+EL D M   G    ++TY+ L+ +   K GR    
Sbjct: 132 CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV-EGLCKAGRTDKG 190

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LLQ + R  ++ ++ +Y+ +++GLC+  R +EA + +  +   G  P VVTYN L+  
Sbjct: 191 FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMEL 250

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C+   +  A +L+  M E+GC PD  ++NTVI G       D A + LK+
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           F Y SLI+GLC   +L +A EL D+M  +GI   +  +N +I     K GRF  A+   +
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIR-GLCKAGRFGDALGYFK 89

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKK 158
           T+   K   +I  +++++D L + GR EEA +  + + +    +P VVTY  +INGLCK 
Sbjct: 90  TVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKD 149

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A +LL  M E GC P+  +++ +++G      TD+  + L++
Sbjct: 150 GKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQE 196



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRL 56
           T  +   N   Y   ING+CK  ++D AI+        G C +V  YS L+ GLC   R 
Sbjct: 128 TSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRT 187

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            +   L  +M  +G   +++ YN L++   + +    A+ L+Q + R      +  Y+ +
Sbjct: 188 DKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  CR  + + A + +  +SE+G  P V+ YN +I GLC+   + +A  LL QM    C
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARC 307

Query: 177 FPDSTSFNTVIQGF 190
            PD  +++T+I G 
Sbjct: 308 VPDVITYSTIIDGL 321



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T + F+ +  +Y   +NG+CK R +D A       I+ G    V  Y+SL+   C   
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A  L   M  +G   +++ YN +I           A ALL+ +   +   ++  YS
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 115 LVIDGLCRVGR----W--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +IDGLC+  R    W  E A + L+ + + G  P   TY ++I GLC+     +A  LL
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M +    PD +SF+ VI      ++ D A
Sbjct: 376 RRMIDSEVVPDLSSFSMVIGSLCKSHDLDAA 406



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 13/190 (6%)

Query: 23  CKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+ +++D A +       +G   DV  Y+++I GLC   RL +A  L  +MVA     ++
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311

Query: 76  VTYNPLIH---DNWEKQGRF---SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           +TY+ +I     +W     +   +A  +L+ +++     N   Y++VI+GLCR  + ++A
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++ +  +VP + +++++I  LCK   +  A K+   M E+ C P+  ++  +I G
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDG 431

Query: 190 FLVKNETDRA 199
                E D+A
Sbjct: 432 LSKGGEVDKA 441



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR------LKEAVE 61
           Y   I G+C+   +D A       +      DV  YS++I+GLC   R      L+ A E
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + + M   G      TY  +I      +    A+ALL+ +   +   ++  +S+VI  LC
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 122 RVGRWEEARK-------------------KLDQLSEKGLV---------------PGVVT 147
           +    + A K                    +D LS+ G V               PGV T
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVAT 458

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN +++GLC  G I EA +++  M  K CFPD  S+  +I+G 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+C+ R+   A       I   +  D+  +S +I  LC  + L  A ++F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +      V Y  LI D   K G       +  L  + +   +  Y+ V+DGLC V
Sbjct: 411 GMMSERECKPNPVAYAALI-DGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGV 469

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA + ++ +  K   P   +Y  LI GLC+   + EA +L   ++ KG   +   +
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++     K     A     K
Sbjct: 530 NVLVNELCKKKRLSDAHGVANK 551



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +Q    ++   N   Y  +I GLC+ G+ ++A + LD++ ++G+ PGV  +N +I GLCK
Sbjct: 18  VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCK 77

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   +A      +    C PD  +FN ++   +     + A
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   + + I  +CK  ++D+A K       +    +   Y++LI+GL     + +AV +F
Sbjct: 386 DLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF 445

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + MV +     + TYN ++ D     GR   A+ +++ +   +   +   Y  +I GLCR
Sbjct: 446 ELMV-ESFRPGVATYNSVL-DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V   EEA +    +  KG    V  YN+L+N LCKK  + +A  +  ++ E G
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNRL 56
           ++E+  K N   Y   I+G+ K  E+D A++      +     V  Y+S+++GLC   R+
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRI 472

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +EAV + + M+ +    +  +Y  LI           A  L Q +E   + + + VY+++
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVL 532

Query: 117 IDGLCRVGRWEEARKKLDQLSEKG 140
           ++ LC+  R  +A    ++L E G
Sbjct: 533 VNELCKKKRLSDAHGVANKLIEAG 556



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F+L  + F+     Y   ++G+C +  I+ A++       K    D   Y +LI GLC  
Sbjct: 445 FELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           + ++EA ELF  + A+G   E+  YN L+++  +K+
Sbjct: 505 SCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKK 540



 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R G+  +A   +    E+  VP   TY  LI+GLCK G + +A +LL +M+++G  P 
Sbjct: 8   LVRAGQHGQA---VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
               N VI+G         A  + K
Sbjct: 65  VAVHNGVIRGLCKAGRFGDALGYFK 89


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 15/209 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + + G+CK    D          ++G   DV +Y++L+NGLC   RL EA+EL 
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV 229

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+  G    +VTYN L+      +    A  L+Q +       ++  Y+ VI GLCR 
Sbjct: 230 QLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRD 289

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD-------KLLVQMKEKGC 176
            R ++A+  L Q+     VP V+TY+ +I+GLCK   + +AD       ++L  MK+ GC
Sbjct: 290 ARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRV-DADWKLEAACEILEMMKQTGC 348

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P++ ++  VI+G     ++ +A + L++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRR 377



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 107/204 (52%), Gaps = 10/204 (4%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           E+R   N   YG  I+G+CK  ++D A +       +GI   V V++ +I GLC   R  
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFG 82

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYEL-NIEVYSL 115
           +A+  F  +     T +++T+N L+ D   K GR   A  + +++      L N+  Y+ 
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILV-DALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTT 141

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GLC+ G+ + A + LD ++E G  P V+TY++L+ GLCK G   +   LL +M  +G
Sbjct: 142 VINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD   +NT++ G       D A
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEA 225



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)

Query: 37  CL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-A 94
           CL +V  Y+++INGLC   +L  A+EL D M   G    ++TY+ L+ +   K GR    
Sbjct: 132 CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV-EGLCKAGRTDKG 190

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LLQ + R  ++ ++ +Y+ +++GLC+  R +EA + +  +   G  P VVTYN L+  
Sbjct: 191 FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMEL 250

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C+   +  A +L+  M E+GC PD  ++NTVI G       D A + LK+
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRL 56
           T  +   N   Y   ING+CK  ++D AI+        G C +V  YS L+ GLC   R 
Sbjct: 128 TSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRT 187

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            +   L  +M  +G   +++ YN L++   + +    A+ L+Q + R      +  Y+ +
Sbjct: 188 DKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  CR  + + A + +  +SE+G  P V+ YN +I GLC+   + +A  LL QM    C
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARC 307

Query: 177 FPDSTSFNTVIQGF 190
            PD  +++T+I G 
Sbjct: 308 VPDVITYSTIIDGL 321



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           F Y SLI+GLC   +L +A EL D+M  +GI   +  +N +I     K GRF  A+   +
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIK-GLCKAGRFGDALGYFK 89

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKK 158
           T+   K   +I  +++++D L + GR EEA +  + + +    +P VVTY  +INGLCK 
Sbjct: 90  TVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKD 149

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A +LL  M E GC P+  +++ +++G      TD+  + L++
Sbjct: 150 GKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQE 196



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T + F+ +  +Y   +NG+CK R +D A       I+ G    V  Y+SL+   C   
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A  L   M  +G   +++ YN +I           A ALL+ +   +   ++  YS
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 115 LVIDGLCRVGR----W--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +IDGLC+  R    W  E A + L+ + + G  P   TY ++I GLC+     +A  LL
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M +    PD +SF+ VI      ++ D A
Sbjct: 376 RRMIDSEVVPDLSSFSMVIGSLCKSHDLDAA 406



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 13/190 (6%)

Query: 23  CKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+ +++D A +       +G   DV  Y+++I GLC   RL +A  L  +MVA     ++
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311

Query: 76  VTYNPLIH---DNWEKQGRF---SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           +TY+ +I     +W     +   +A  +L+ +++     N   Y++VI+GLCR  + ++A
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++ +  +VP + +++++I  LCK   +  A K+   M E+ C P+  ++  +I G
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDG 431

Query: 190 FLVKNETDRA 199
                E D+A
Sbjct: 432 LSKGGEVDKA 441



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR------LKEAVE 61
           Y   I G+C+   +D A       +      DV  YS++I+GLC   R      L+ A E
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + + M   G      TY  +I      +    A+ALL+ +   +   ++  +S+VI  LC
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 122 RVGRWEEARK-------------------KLDQLSEKGLV---------------PGVVT 147
           +    + A K                    +D LS+ G V               PGV T
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVAT 458

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN +++GLC  G I EA +++  M  K CFPD  S+  +I+G 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 8/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+C+ R+   A       I   +  D+  +S +I  LC  + L  A ++F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +      V Y  LI D   K G       +  L  + +   +  Y+ V+DGLC V
Sbjct: 411 GMMSERECKPNPVAYAALI-DGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGV 469

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEA + ++ +  K   P   +Y  LI GLC+   + EA +L   ++ KG   +   +
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++     K     A     K
Sbjct: 530 NVLVNELCKKKRLSDAHGVANK 551



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +Q    ++   N   Y  +I GLC+ G+ ++A + LD++ ++G+ PGV  +N +I GLCK
Sbjct: 18  VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCK 77

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   +A      +    C PD  +FN ++   +     + A
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   + + I  +CK  ++D+A K       +    +   Y++LI+GL     + +AV +F
Sbjct: 386 DLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF 445

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + MV +     + TYN ++ D     GR   A+ +++ +   +   +   Y  +I GLCR
Sbjct: 446 ELMV-ESFRPGVATYNSVL-DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V   EEA +    +  KG    V  YN+L+N LCKK  + +A  +  ++ E G
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNRL 56
           ++E+  K N   Y   I+G+ K  E+D A++      +     V  Y+S+++GLC   R+
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRI 472

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +EAV + + M+ +    +  +Y  LI           A  L Q +E   + + + VY+++
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVL 532

Query: 117 IDGLCRVGRWEEARKKLDQLSEKG 140
           ++ LC+  R  +A    ++L E G
Sbjct: 533 VNELCKKKRLSDAHGVANKLIEAG 556



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F+L  + F+     Y   ++G+C +  I+ A++       K    D   Y +LI GLC  
Sbjct: 445 FELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           + ++EA ELF  + A+G   E+  YN L+++  +K+
Sbjct: 505 SCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKK 540



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R G+  +A   +    E+  VP   TY  LI+GLCK G + +A +LL +M+++G  P 
Sbjct: 8   LVRAGQHGQA---VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
               N VI+G         A  + K
Sbjct: 65  VAVHNGVIKGLCKAGRFGDALGYFK 89


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK   ID A+K       KG+ LDV  YS+LI+G C    ++ A +LF
Sbjct: 643 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 702

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +++  G++   + YN +I    +     +A+   + +  D+   ++  Y+ +IDGL + 
Sbjct: 703 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 762

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR   A     ++  KG+VP ++T+++L+NGLC KG +  A K+L +M  K   P    +
Sbjct: 763 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 822

Query: 184 NTVIQGFL 191
           NT+I G+ 
Sbjct: 823 NTLIAGYF 830



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 114/209 (54%), Gaps = 17/209 (8%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y   I+G CK R+++SA       ++ G+  +  VY+S+I+G    N
Sbjct: 669 EMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLN 728

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEV 112
            ++ A+  + KM+   I  +L TY  LI D   K+GR  F++   ++ L +     +I  
Sbjct: 729 NMEAALVWYKKMINDRIPCDLGTYTTLI-DGLLKEGRLVFASDLYMEMLSKGIVP-DIIT 786

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + ++++GLC  G+ E ARK L+++  K + P V+ YN LI G  ++G + EA  L  +M 
Sbjct: 787 FHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 846

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           ++G  PD  +++ +I G   K + DR+ S
Sbjct: 847 DRGLVPDDVTYDILING---KFKGDRSLS 872



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D A+  G+  ++F Y+ +++ LC   ++ EA  L D MV QG+   +V+YN +I  +  K
Sbjct: 459 DEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRK 517

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A ++   +     + N+  YS++IDG  + G  E+A    DQ+    + P   T+
Sbjct: 518 GNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTF 577

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N +INGLCK G + EA   L    E+G  P   ++N+++ GF+ +   D A
Sbjct: 578 NTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSA 628



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +  K N   Y I I+G  K       +   D  +   I    F ++++INGLC   
Sbjct: 529 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 588

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           ++ EA +     + +G     +TYN ++ D + K+G   SA+A+ + +       N+  Y
Sbjct: 589 QMSEARDKLKNFLEEGFIPSCMTYNSIV-DGFIKEGNIDSALAVYREMCEFGVSPNVVTY 647

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+  R + A K  D++ EKGL   V  Y+ LI+G CK+  +  A  L  ++ E
Sbjct: 648 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLE 707

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+   +N++I GF   N  + A  + KK
Sbjct: 708 VGLSPNRIVYNSMISGFRDLNNMEAALVWYKK 739



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E+ F  +   Y   ++G  K   IDSA+       + G+  +V  Y+SLING C  NR+ 
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 661

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A++  D+M  +G+  ++  Y+ LI    +++   SA  L   L       N  VY+ +I
Sbjct: 662 LALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 721

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G   +   E A     ++    +   + TY  LI+GL K+G ++ A  L ++M  KG  
Sbjct: 722 SGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIV 781

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL----KKNM 207
           PD  +F+ ++ G   K + + A   L    +KNM
Sbjct: 782 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNM 815



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 7/161 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F+L E     N  VY   I+G   +  +++A       I   I  D+  Y++LI+GL   
Sbjct: 703 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 762

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL  A +L+ +M+++GI  +++T++ L++    K    +A  +L+ ++R     ++ +Y
Sbjct: 763 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 822

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +I G  R G  +EA    D++ ++GLVP  VTY+ILING
Sbjct: 823 NTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+ LD   YS +I  +C        +EL ++M  +G      T+  +I     +    
Sbjct: 288 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 347

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L + +      +N+ V + ++ G C  G  + A    ++++E GL P  VTY++LI
Sbjct: 348 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 407

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            G C  G I +A +L  QMK  G  P   + N++++G+L
Sbjct: 408 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYL 446



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE     N   Y + I G C    I+ A +        GI   VF  +SL+ G      
Sbjct: 391 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPL 450

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFS-AMALLQTLERDKYELNIEVY 113
            +EA +LFD+ V  G+ A + TYN ++  +W  K G+   A +LL  +       N+  Y
Sbjct: 451 WEEASKLFDEAVDCGV-ANIFTYNIMM--SWLCKGGKMDEACSLLDNMVNQGMVPNVVSY 507

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR G  + A      +  + L P VVTY+ILI+G  KKG   +A  L  QM  
Sbjct: 508 NDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS 567

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               P   +FNT+I G     +   A   LK
Sbjct: 568 LNIAPTDFTFNTIINGLCKVGQMSEARDKLK 598



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 43/239 (17%)

Query: 5   EQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           E+  K +   Y I I  +CK       +  ++   ++G       ++S+I        + 
Sbjct: 288 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 347

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA+ L ++M+  G    LV    L+     +    SA+ L   +  D    N   YS++I
Sbjct: 348 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 407

Query: 118 DGLCRVGR-----------------------------------WEEARKKLDQLSEKGLV 142
           +G C  G                                    WEEA K  D+  + G V
Sbjct: 408 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-V 466

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
             + TYNI+++ LCK G + EA  LL  M  +G  P+  S+N +I G   K   D ASS
Sbjct: 467 ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 525



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTF----NRLKEAV 60
           F+ +  V+   +N   +   I++AI      IC DV  +   +N L T     N + E  
Sbjct: 186 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 245

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L++KMV +GI  +  T + ++     K+GR   A    +  +    +L+   YS++I  
Sbjct: 246 DLYNKMVLRGIYGDHFTVHVMVRACL-KEGRVEEAEEYFRETKERGVKLDAGAYSIIIQA 304

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C+        + L+++ E+G VP   T+  +I     +G ++EA +L  +M   G   +
Sbjct: 305 VCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMN 364

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
                ++++G+  +   D A +   K
Sbjct: 365 LVVATSLMKGYCAQGNLDSALNLFNK 390



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 54/109 (49%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L+   +R  +EL+  V++ +++   R  R E A    + +  + ++P V   NIL+  L 
Sbjct: 177 LINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 236

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ MI E   L  +M  +G + D  + + +++  L +   + A  + ++
Sbjct: 237 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRE 285


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 44/244 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E     +  +Y   I+G+CK   ++ A          G+  +V  Y++++ GLC+  R
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 56  LKEA-----------------------------------VELFDKMVAQGITAELVTYNP 80
            KEA                                   +EL ++M++ G   +++TY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           +I + + K+G    A+ LL+++     + N   Y++V+ GLC  GRW +A + + Q+ ++
Sbjct: 397 VI-NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P  VT+N LIN LCKKG++ +A +LL QM   GC PD  S++TVI G     +T+ A
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 200 SSFL 203
              L
Sbjct: 516 LELL 519



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N +C+   +D A+         G   D+  Y++++ GLC   R  +  EL D+MV    
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 72  TAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +VT+N LI     + G F  +  +L  +       +I +Y+ +IDG+C+ G  E A 
Sbjct: 248 APNIVTFNTLI-GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++   GL P VV YN ++ GLC      EA++LL +M +K C  D  +FN ++  F
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 191 LVKNETDRASSFLKK 205
                 DR    L++
Sbjct: 367 CQNGLVDRVIELLEQ 381



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +        +D  ++     ++  +++LI  LC     +   E+  +M 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T ++  Y  +I D   K+G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 279 EHGCTPDIRMYATII-DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++ +K      VT+NIL++  C+ G++    +LL QM   GC PD  ++ TV
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTV 397

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +   D A   LK 
Sbjct: 398 INGFCKEGLIDEAVMLLKS 416



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A EL  +M+
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMI 453

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ +   L ++G + +  ++   +K+     D+  +N VI
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 188 QGFLVKNETDRASSFL 203
                + ETDRA  F 
Sbjct: 574 SSLCKRWETDRAIDFF 589



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +   + G+C    I  A++       KG      +Y  ++   C     + +V + 
Sbjct: 110 NAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVL 169

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A+G T +    N +++   E+     A+ LL+ L     E +I  Y+ V+ GLC  
Sbjct: 170 EAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMA 229

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            RW +  + +D++      P +VT+N LI  LC+ G+     ++L QM E GC PD   +
Sbjct: 230 KRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G   +   + A+  L +
Sbjct: 290 ATIIDGICKEGHLEVANEILNR 311



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C   R +D+       I++G   +   +++LIN LC    +++A+E
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 483 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR  +  +  D + +  +    V YN +I+ LCK+     A      M   GC P+ 
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 602 STYTMLIKGLASEGLAKEAQELLSE 626



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN +CK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA+EL + MV +GI+   + Y+  I     ++GR +  + +   ++      +  +Y+
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSS-IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYN 570

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY +LI GL  +G+  EA +LL ++ 
Sbjct: 571 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628

Query: 173 EKG 175
            +G
Sbjct: 629 SRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 44/244 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E     +  +Y   I+G+CK   ++ A          G+  +V  Y++++ GLC+  R
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 56  LKEA-----------------------------------VELFDKMVAQGITAELVTYNP 80
            KEA                                   +EL ++M++ G   +++TY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 81  LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           +I + + K+G    A+ LL+++     + N   Y++V+ GLC  GRW +A + + Q+ ++
Sbjct: 397 VI-NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P  VT+N LIN LCKKG++ +A +LL QM   GC PD  S++TVI G     +T+ A
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 200 SSFL 203
              L
Sbjct: 516 LELL 519



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N +C+   +D A+         G   D+  Y++++ GLC   R  +  EL D+MV    
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 72  TAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +VT+N LI     + G F  +  +L  +       +I +Y+ +IDG+C+ G  E A 
Sbjct: 248 APNIVTFNTLI-GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++   GL P VV YN ++ GLC      EA++LL +M +K C  D  +FN ++  F
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 191 LVKNETDRASSFLKK 205
                 DR    L++
Sbjct: 367 CQNGLVDRVIELLEQ 381



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +        +D  ++     ++  +++LI  LC     +   E+  +M 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T ++  Y  +I D   K+G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 279 EHGCTPDIRMYATII-DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++ +K      VT+NIL++  C+ G++    +LL QM   GC PD  ++ TV
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTV 397

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +   D A   LK 
Sbjct: 398 INGFCKEGLIDEAVMLLKS 416



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A EL  +M+
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMI 453

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ +   L ++G + +  ++   +K+     D+  +N VI
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 188 QGFLVKNETDRASSFL 203
                + ETDRA  F 
Sbjct: 574 SSLCKRWETDRAIDFF 589



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +   + G+C    I  A++       KG      +Y  ++   C     + +V + 
Sbjct: 110 NAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVL 169

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A+G T +    N +++   E+     A+ LL+ L     E +I  Y+ V+ GLC  
Sbjct: 170 EAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMA 229

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            RW +  + +D++      P +VT+N LI  LC+ G+     ++L QM E GC PD   +
Sbjct: 230 KRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G   +   + A+  L +
Sbjct: 290 ATIIDGICKEGHLEVANEILNR 311



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C   R +D+       I++G   +   +++LIN LC    +++A+E
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 483 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR  +  +  D + +  +    V YN +I+ LCK+     A      M   GC P+ 
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 602 STYTMLIKGLASEGLAKEAQELLSE 626



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN +CK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA+EL + MV +GI+   + Y+  I     ++GR +  + +   ++      +  +Y+
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSS-IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYN 570

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY +LI GL  +G+  EA +LL ++ 
Sbjct: 571 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628

Query: 173 EKG 175
            +G
Sbjct: 629 SRG 631


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK------KGICLD-VFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y I I G+C    ID A +      +G C   V  Y+ L++GLC   R+ EA  L  +
Sbjct: 162 YSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGE 221

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVG 124
           MV +G+   +VTYN LI     ++GRF  +  LL+ +E  ++  +   Y+ V+ GLC+ G
Sbjct: 222 MVNKGVVPNVVTYNALI-GGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHG 280

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +     K L +   KG+   V+TYN LING CK G +  A  +L  MK     P   +FN
Sbjct: 281 KVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFN 340

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            VI GF    +  +A +FL +
Sbjct: 341 EVIHGFCCGGKVHKAMAFLTQ 361



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           +   H Y + ++G+CK+R +  A       + KG+  +V  Y++LI GLC   R  +  +
Sbjct: 193 RPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTK 252

Query: 62  LFDKM-----------------------------------VAQGITAELVTYNPLIHDNW 86
           L +KM                                   + +G+  E++TYN LI+   
Sbjct: 253 LLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYC 312

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           +     +A+ +LQ ++R++    ++ ++ VI G C  G+  +A   L Q++  GL P  V
Sbjct: 313 KGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTV 372

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           T+N LI+G C  G    A +LL  M+E G  PD  ++   I     + + + A S   
Sbjct: 373 TFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFS 430



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 42/242 (17%)

Query: 6   QRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLC------- 51
           QR   +   Y   ++G+CK        + +  AI KG+ L+V  Y++LING C       
Sbjct: 260 QRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKA 319

Query: 52  ------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNPLIH 83
                             TFN          ++ +A+    +M   G++   VT+N LI 
Sbjct: 320 ALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLIS 379

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                  R  A+ LL  +E      + + Y++ ID LC  G+ EEA      L  KG+  
Sbjct: 380 GQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKA 439

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             V Y  L++G C+ G I  A  L+ +M  + C PD  ++NT+I G       DRA   L
Sbjct: 440 HNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLL 499

Query: 204 KK 205
            K
Sbjct: 500 DK 501



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C + E   A++        G+  D   Y+  I+ LC   +L+EA  LF  +  +GI
Sbjct: 378 ISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGI 437

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            A  V Y  L+H   +     SA  L++ +  +    ++  Y+ +IDGLC+V R + A  
Sbjct: 438 KAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAID 497

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            LD++ ++G+ P   T+NILI  +       +A K+  QM   GC PD  ++   I 
Sbjct: 498 LLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKIS 554



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           + +K G   +   Y++LIN  C    L +A     +M   G+  +  TYN L+       
Sbjct: 80  AMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAG 139

Query: 90  GRFSAMALLQTLER------DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
              +A  L   + R      D+Y      Y+++I GLC  GR ++A +   ++S     P
Sbjct: 140 LLAAACGLFVQMPRRWGACYDRYS-----YTILIKGLCAAGRIDDACRVFAKMSRGWCRP 194

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           GV TY +L++GLCK   + EA+ LL +M  KG  P+  ++N +I G   +   D  +  L
Sbjct: 195 GVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLL 254

Query: 204 KK 205
           +K
Sbjct: 255 EK 256



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G C D + Y+ LI GLC   R+ +A  +F KM        + TY  L+    + +    A
Sbjct: 156 GACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEA 215

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            ALL  +       N+  Y+ +I GLC+ GR+++  K L+++  +   P   TY  +++G
Sbjct: 216 EALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHG 275

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK G +    K+L +   KG   +  ++N +I G+
Sbjct: 276 LCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGY 311



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNR 55
           L  +  K +  +Y   ++G C++ +IDSA      +    C+ DV  Y++LI+GLC   R
Sbjct: 432 LPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKR 491

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDN-WEKQGRFSAMALLQTLER----DKYELNI 110
           L  A++L DKM  QGI     T+N LI    W+K+   +A    Q +      DK    +
Sbjct: 492 LDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTL 551

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           ++ +   +G     + E     + ++ E G+ P V TYN +I      G+  +A    V+
Sbjct: 552 KISTDWFEG---ATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVK 608

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETD 197
           M      PD T+++ ++     K+++D
Sbjct: 609 MLSVPIDPDCTTYSILLNYMCNKDDSD 635



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y I I+ +C   +++ A         KGI     +Y+SL++G C    +  A  L +K
Sbjct: 407 QTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEK 466

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M ++    ++ TYN LI D   K  R   A+ LL  +++   E     ++++I  +    
Sbjct: 467 MASENCMPDVHTYNTLI-DGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDK 525

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA--DKLLVQMKEKGCFPDSTS 182
           +  +A K  +Q+   G  P   TY + I+    +G   E   D  +V+M E G FPD  +
Sbjct: 526 KHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVET 585

Query: 183 FNTVIQGFL 191
           +N +I+ ++
Sbjct: 586 YNAIIKAYV 594



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y   I+G+CK++ +D AI       K+GI      ++ LI  +    +  +A +++
Sbjct: 475 DVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMY 534

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSA---MALLQTLERDKYELNIEVYSLVIDGL 120
           ++M++ G   +  TY   I  +W +         MA+++  E   +  ++E Y+ +I   
Sbjct: 535 EQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFP-DVETYNAIIKAY 593

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG--------------MIMEADK 166
              G  E+A     ++    + P   TY+IL+N +C K                +    +
Sbjct: 594 VDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQE 653

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGF 190
           L  QM E    P  +++  +++G 
Sbjct: 654 LFEQMCESDAAPGISTYKALLRGL 677


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 2/177 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D+  ++GI  DV+ Y+ LI G C   R+ EAV LF++M  + +  ++V Y+ LI D   K
Sbjct: 353 DTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLI-DGLCK 411

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR S A  L  T+  D    N+  Y+++ID  C++   +   +    +  KGL P V+T
Sbjct: 412 SGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLT 471

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           YNILING CK   I EA  LL  M+ K   PDS ++N++  G         A    K
Sbjct: 472 YNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFK 528



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G CK + ID A+        K + LD+ +YSSLI+GLC   R+  A ELF  + 
Sbjct: 367 YTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTIN 426

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G    ++TYN LI    + Q     + L + +        +  Y+++I+G C+  R  
Sbjct: 427 NDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIR 486

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  +  K L P  +TYN L +GLCK G I +A +L   M   G   D  ++N ++
Sbjct: 487 EAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLL 546

Query: 188 QGF 190
             F
Sbjct: 547 DAF 549



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 17/203 (8%)

Query: 15  YGIRINGMCKI-REIDS----------AIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           YG  ING+CKI R ID+           +K     ++ +Y+ +I+  C      +A +L+
Sbjct: 192 YGTLINGLCKIGRSIDAFQLLQEMEGQVVKP----NIVIYNMIIDSFCKDELTCKARDLY 247

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCR 122
            K+V  GI  +++TY  LI   + + G++  +  L+  +       N+  ++++ID  CR
Sbjct: 248 LKIVDMGIDPDILTYTSLIR-GFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR 306

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+  EA+   + + ++G  P +VT+N LI+G C  G ++EA KL   + E+G  PD  S
Sbjct: 307 KGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWS 366

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I G+      D A S   +
Sbjct: 367 YTILIIGYCKCKRIDEAVSLFNE 389



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 45/232 (19%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L +  FKG   +     I IN  C + E+  A       +K+G   +    ++++ GLC 
Sbjct: 107 LKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCI 166

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              +++A++  D + AQG+  + V Y  LI+   +      A  LLQ +E    + NI +
Sbjct: 167 NGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVI 226

Query: 113 YSLVID-----------------------------------GLCRVGRWEEARKKLDQLS 137
           Y+++ID                                   G CR G+W E ++ + ++ 
Sbjct: 227 YNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMV 286

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K + P V T+N+LI+  C+KG ++EA  +   M ++G  PD  +FNT+I G
Sbjct: 287 NKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG 338



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +    N + + + I+  C+  ++  A       +K+G   D+  +++LI+G C   
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHG 343

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA +LFD +  +GI  ++ +Y  LI    + +    A++L   +      L+I +YS
Sbjct: 344 NVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYS 403

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ GR   A +    ++  G  P V+TYNILI+  CK   I    +L   M  K
Sbjct: 404 SLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGK 463

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P   ++N +I G+        A + L 
Sbjct: 464 GLTPTVLTYNILINGYCKSKRIREAMNLLS 493



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  K N  +Y + I+  CK      A       +  GI  D+  Y+SLI G C   
Sbjct: 214 EMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTG 273

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  E  +L  +MV + I   + T+N LI     K     A  +   + +   + +I  ++
Sbjct: 274 QWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFN 333

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C  G   EARK  D + E+G++P V +Y ILI G CK   I EA  L  +M+ K
Sbjct: 334 TLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCK 393

Query: 175 GCFPDSTSFNTVIQGF 190
               D   ++++I G 
Sbjct: 394 NMVLDIVLYSSLIDGL 409



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            V  ++++I  +        A+ L  +MV +G+T  + T +  I+          A ++L
Sbjct: 83  SVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVL 142

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             + +  Y+ N    + V+ GLC  G  ++A    D ++ +G++   V Y  LINGLCK 
Sbjct: 143 GIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKI 202

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  ++A +LL +M+ +   P+   +N +I  F     T +A
Sbjct: 203 GRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKA 243


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK   ID A+K       KG+ LDV  YS+LI+G C    ++ A +LF
Sbjct: 603 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 662

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +++  G++   + YN +I    +     +A+   + +  D+   ++  Y+ +IDGL + 
Sbjct: 663 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 722

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR   A     ++  KG+VP ++T+++L+NGLC KG +  A K+L +M  K   P    +
Sbjct: 723 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 782

Query: 184 NTVIQGFL 191
           NT+I G+ 
Sbjct: 783 NTLIAGYF 790



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 114/209 (54%), Gaps = 17/209 (8%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y   I+G CK R+++SA       ++ G+  +  VY+S+I+G    N
Sbjct: 629 EMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLN 688

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEV 112
            ++ A+  + KM+   I  +L TY  LI D   K+GR  F++   ++ L +     +I  
Sbjct: 689 NMEAALVWYKKMINDRIPCDLGTYTTLI-DGLLKEGRLVFASDLYMEMLSKGIVP-DIIT 746

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + ++++GLC  G+ E ARK L+++  K + P V+ YN LI G  ++G + EA  L  +M 
Sbjct: 747 FHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 806

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           ++G  PD  +++ +I G   K + DR+ S
Sbjct: 807 DRGLVPDDVTYDILING---KFKGDRSLS 832



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D A+  G+  ++F Y+ +++ LC   ++ EA  L D MV QG+   +V+YN +I  +  K
Sbjct: 419 DEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRK 477

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A ++   +     + N+  YS++IDG  + G  E+A    DQ+    + P   T+
Sbjct: 478 GNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTF 537

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N +INGLCK G + EA   L    E+G  P   ++N+++ GF+ +   D A
Sbjct: 538 NTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSA 588



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +  K N   Y I I+G  K       +   D  +   I    F ++++INGLC   
Sbjct: 489 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 548

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           ++ EA +     + +G     +TYN ++ D + K+G   SA+A+ + +       N+  Y
Sbjct: 549 QMSEARDKLKNFLEEGFIPSCMTYNSIV-DGFIKEGNIDSALAVYREMCEFGVSPNVVTY 607

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+  R + A K  D++ EKGL   V  Y+ LI+G CK+  +  A  L  ++ E
Sbjct: 608 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLE 667

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+   +N++I GF   N  + A  + KK
Sbjct: 668 VGLSPNRIVYNSMISGFRDLNNMEAALVWYKK 699



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +  E+ F  +   Y   ++G  K   IDSA+       + G+  +V  Y+SLING C  N
Sbjct: 559 NFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSN 618

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+  A++  D+M  +G+  ++  Y+ LI    +++   SA  L   L       N  VY+
Sbjct: 619 RIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYN 678

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G   +   E A     ++    +   + TY  LI+GL K+G ++ A  L ++M  K
Sbjct: 679 SMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSK 738

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL----KKNM 207
           G  PD  +F+ ++ G   K + + A   L    +KNM
Sbjct: 739 GIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNM 775



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 7/161 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F+L E     N  VY   I+G   +  +++A       I   I  D+  Y++LI+GL   
Sbjct: 663 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 722

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL  A +L+ +M+++GI  +++T++ L++    K    +A  +L+ ++R     ++ +Y
Sbjct: 723 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 782

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +I G  R G  +EA    D++ ++GLVP  VTY+ILING
Sbjct: 783 NTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+ LD   YS +I  +C        +EL ++M  +G      T+  +I     +    
Sbjct: 248 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 307

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L + +      +N+ V + ++ G C  G  + A    ++++E GL P  VTY++LI
Sbjct: 308 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 367

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            G C  G I +A +L  QMK  G  P   + N++++G+L
Sbjct: 368 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYL 406



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +TE     N   Y + I G C    I+ A +        GI   VF  +SL+ G      
Sbjct: 351 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPL 410

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFS-AMALLQTLERDKYELNIEVY 113
            +EA +LFD+ V  G+ A + TYN ++  +W  K G+   A +LL  +       N+  Y
Sbjct: 411 WEEASKLFDEAVDCGV-ANIFTYNIMM--SWLCKGGKMDEACSLLDNMVNQGMVPNVVSY 467

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G CR G  + A      +  + L P VVTY+ILI+G  KKG   +A  L  QM  
Sbjct: 468 NDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS 527

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               P   +FNT+I G     +   A   LK
Sbjct: 528 LNIAPTDFTFNTIINGLCKVGQMSEARDKLK 558



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 43/239 (17%)

Query: 5   EQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           E+  K +   Y I I  +CK       +  ++   ++G       ++S+I        + 
Sbjct: 248 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 307

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA+ L ++M+  G    LV    L+     +    SA+ L   +  D    N   YS++I
Sbjct: 308 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 367

Query: 118 DGLCRVGR-----------------------------------WEEARKKLDQLSEKGLV 142
           +G C  G                                    WEEA K  D+  + G V
Sbjct: 368 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-V 426

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
             + TYNI+++ LCK G + EA  LL  M  +G  P+  S+N +I G   K   D ASS
Sbjct: 427 ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 485



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTF----NRLKEAV 60
           F+ +  V+   +N   +   I++AI      IC DV  +   +N L T     N + E  
Sbjct: 146 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 205

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L++KMV +GI  +  T + ++     K+GR   A    +  +    +L+   YS++I  
Sbjct: 206 DLYNKMVLRGIYGDHFTVHVMVRACL-KEGRVEEAEEYFRETKERGVKLDAGAYSIIIQA 264

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C+        + L+++ E+G VP   T+  +I     +G ++EA +L  +M   G   +
Sbjct: 265 VCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMN 324

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
                ++++G+  +   D A +   K
Sbjct: 325 LVVATSLMKGYCAQGNLDSALNLFNK 350



 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 54/109 (49%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L+   +R  +EL+  V++ +++   R  R E A    + +  + ++P V   NIL+  L 
Sbjct: 137 LINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 196

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ MI E   L  +M  +G + D  + + +++  L +   + A  + ++
Sbjct: 197 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRE 245


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 89/147 (60%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S +I+ LC     + A+ L +KM     TA +VTYN ++    E+     A+ LL  ++ 
Sbjct: 296 SVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQT 355

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           D  + NI  Y++++ GLC   RWE+A   + ++S+   +P ++T+N +I  LC+KG+ M+
Sbjct: 356 DGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQ 415

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A ++  QM EKGC P+S ++++VI+G 
Sbjct: 416 AVEVFKQMPEKGCCPNSVTYSSVIEGL 442



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y    +G C++  +D A +      +    + Y+ L++ LC   ++++A+ L D M+ +
Sbjct: 122 TYSALADGYCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYR 181

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   ++VTYN L+    + +G   AM L+  +  +        Y++++DG+CR G  + A
Sbjct: 182 GCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYA 241

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L+ L   G  P  V YN ++ GL   G   + ++L+ +M  + C P   + + VI  
Sbjct: 242 RELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISS 301

Query: 190 FLVKNETDRASSFLKK 205
              +    RA   L+K
Sbjct: 302 LCQEGLFQRAIRLLEK 317



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 13  HVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ++ +C   ++R+    +D+ + +G   DV  Y+ L+   C     ++A+EL D 
Sbjct: 153 YAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDL 212

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +G T   VTYN +I D   ++G    A  LL +L       N   Y+ V+ GL   G
Sbjct: 213 MRVEGCTPTNVTYN-VIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAG 271

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RWE+  + + ++  +   P   T +++I+ LC++G+   A +LL +M +  C  +  ++N
Sbjct: 272 RWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYN 331

Query: 185 TVIQGFLVKNETDRASSFLKKNM 207
            V+ G   +   D A  +L  NM
Sbjct: 332 AVVSGLCEQGHVDGA-LYLLSNM 353



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G       YS+L +G C   RL EA  + D M    +      YNPL+H    +     A
Sbjct: 115 GSAATAVTYSALADGYCRVGRLDEARRVVDGM---PVLPSAYAYNPLMHALCVRGQVRDA 171

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + LL  +       ++  Y+++++  C+   + +A + +D +  +G  P  VTYN++++G
Sbjct: 172 LVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDG 231

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +C++G +  A +LL  +   GC P++ ++NTV++G 
Sbjct: 232 MCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGL 267



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 105/209 (50%), Gaps = 8/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +++     N   Y   ++G+C+   +D A+         G   ++F Y+ L+ GLC   R
Sbjct: 318 MSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAER 377

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A +L  KM       +++T+N +I    +K     A+ + + +       N   YS 
Sbjct: 378 WEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSS 437

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GL + G+ E++ + L+++  KG  P +  Y++L   L ++  ++EA +++ ++++ G
Sbjct: 438 VIEGLAKTGKMEQSLELLNEMGSKGFNPEI-NYHLLAECLNEEDKLVEAIQMVHKLQDTG 496

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             P +  +NT++ G     +TD+A   L 
Sbjct: 497 ISPQAVLYNTILLGLCRNGKTDQAIDILS 525



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG C +   YSS+I GL    ++++++EL ++M ++G   E + Y+ L     E+    
Sbjct: 425 EKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPE-INYHLLAECLNEEDKLV 483

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ ++  L+         +Y+ ++ GLCR G+ ++A   L  +   G +P   TY+ILI
Sbjct: 484 EAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILI 543

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            GL  +G + EA +LL  +  +    D+
Sbjct: 544 QGLAHEGYMKEARELLSTLSSRDVIVDN 571


>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
 gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 22/194 (11%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I ING C+ R +D A        +K +  D   YS+L+ GLC   R +EA+ LF +
Sbjct: 11  HSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 70

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M + G+   LVTY+ L+   W+      A+ LLQ+++  K E +I               
Sbjct: 71  MCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPDI--------------- 115

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A++   +L   G+ P V TY+++I GL K+ +  EA +L  +M++ G  PDS S+N 
Sbjct: 116 LEVAKELFSKLFVDGIRPTVHTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNV 175

Query: 186 VIQGFLVKNETDRA 199
           +IQGFL   ++  A
Sbjct: 176 IIQGFLQIRDSSTA 189



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV +G    + +YN LI+   + +    A +LL  +   +   +   YS ++ GLC+VGR
Sbjct: 1   MVRKGCGPVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGR 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            +EA     ++   GL+P +VTY+IL++G  K G + EA KLL  M+EK   PD
Sbjct: 61  PQEALNLFKEMCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPD 114



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++I+G C+    +EA+  L ++SEK L P  VTY+ L+ GLC+ G   EA  L  
Sbjct: 10  VHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFK 69

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +M   G  P+  +++ ++ GF      D A   L+
Sbjct: 70  EMCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQ 104



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%)

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           KG  P V +YNILING C+  M+ EA  LL +M EK   PD+ +++T++QG 
Sbjct: 4   KGCGPVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGL 55



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 62/213 (29%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++E+    +   Y   + G+C++     A+         G+  ++  YS L++G     
Sbjct: 35  EMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSTGLLPNLVTYSILLDGFWKHG 94

Query: 55  RLKEAV--------------------ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
            L EA+                    ELF K+   GI        P +H           
Sbjct: 95  HLDEALKLLQSMQEKKLEPDILEVAKELFSKLFVDGI-------RPTVH----------- 136

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                             YS++I GL +    +EA +   ++ + G +P   +YN++I G
Sbjct: 137 -----------------TYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVIIQG 179

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             +      A +L+ +M  KG   DST+F  ++
Sbjct: 180 FLQIRDSSTAVRLIDEMVGKGFSADSTTFQMLL 212


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I+ +CK+  +D A       I +G+  +  V++SL+ GLCT ++
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            ++  ELF +M+ QGI  ++V +N ++  N  K+GR   A  L+ ++     + ++  Y+
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLC-NLCKEGRVMEARRLIDSMVCMGLKPDVISYN 649

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C   R +EA K LD +   GL P +V+YN L++G CK G I  A  L  +M  K
Sbjct: 650 TLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRK 709

Query: 175 GCFPDSTSFNTVIQGFL 191
           G  P   ++NT++ G  
Sbjct: 710 GVTPGVETYNTILNGLF 726



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 15  YGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y I ING     ++D A    ++ G+  DV  Y+++I+GLC    +  A ++F +MV +G
Sbjct: 196 YNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG 255

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +    VTYN +I    + Q    A  + Q +     + +   Y+ +IDGLC+    + A 
Sbjct: 256 VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAE 315

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               Q+ ++G+ P  VTYN +I+GLCK   I +A+ +  QM +KG  PD+ ++  +I G 
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375

Query: 191 LVKNETDRASSFLKK 205
                 DRA    ++
Sbjct: 376 CKAQSVDRAEGVFQQ 390



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 7/184 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK +E+D A       ++KG+  +   Y+++I+GLC    +  A  +F KMV
Sbjct: 228 YNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMV 287

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+    VTYN +I    + Q    A  + Q +     + +   Y+ +IDGLC+    +
Sbjct: 288 DKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAID 347

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A     Q+ +KG+ P  +TY I+I+GLCK   +  A+ +  QM +KG  P++ ++N +I
Sbjct: 348 KAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLI 407

Query: 188 QGFL 191
            G+L
Sbjct: 408 HGYL 411



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K +   Y   I+G+CK + ID A       I KG+  D   Y+ +I+GLC    
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQS 380

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A  +F +M+ +G+     TYN LIH           +  ++ +     E ++  Y L
Sbjct: 381 VDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGL 440

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D LC+ G+  EAR   D +  KG+ P V  Y I+++G  KKG + E   LL  M   G
Sbjct: 441 LLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANG 500

Query: 176 CFPDSTSFNTVIQGF 190
             P+   FNTVI  +
Sbjct: 501 ISPNHRIFNTVICAY 515



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ++G CK   ID+A       ++KG+   V  Y++++NGL    R  EA 
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL+  M+       + TY+ +I D + K   F  A  + Q+L     +L+I  ++++IDG
Sbjct: 736 ELYVNMIKSRKLWSICTYS-IILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDG 794

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L + GR E+A      +   GLVP VVTY ++   L ++G + E D L   M++ G  P+
Sbjct: 795 LFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPN 854

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           S   N +I+  L + E  RA ++L K
Sbjct: 855 SHMLNALIRKLLDRGEIPRAGAYLSK 880



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R IDS +  G+  DV  Y++LI+G C  +R+ EAV+L D MV+ G+   +V+YN L+H  
Sbjct: 631 RLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLH-G 689

Query: 86  WEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           + K GR  +A  L + + R      +E Y+ +++GL R GR+ EAR+    + +   +  
Sbjct: 690 YCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWS 749

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           + TY+I+++G CK     EA K+   +       D  +FN +I G  
Sbjct: 750 ICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLF 796



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+CK + +D A       I +G+  D   Y+++I+GLC    + +A  +F +M+
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI 357

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  + +TY  +I    + Q    A  + Q +     + N   Y+ +I G    G+WE
Sbjct: 358 DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE 417

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E  +++ ++S   L P V TY +L++ LCK G   EA  L   M  KG  P  T +  ++
Sbjct: 418 EVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIML 477

Query: 188 QGF 190
            G+
Sbjct: 478 HGY 480



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+ +ING     ++ +A  LF +M   G++ ++VTYN +I    + Q    A  + 
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVF 248

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q +     + N   Y+ +IDGLC+    + A     ++ +KG+ P  VTYN +I+GLCK 
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKA 308

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  A+ +  QM ++G  PD  ++NT+I G       D+A    ++
Sbjct: 309 QAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 10/212 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCK---IREIDS----AIKKGICLDVFVYSSLINGLCT 52
           FD +  +  K +  +YGI ++G  K   + E+       +  GI  +  +++++I     
Sbjct: 458 FDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAK 517

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIE 111
              + E + +F KM  QG++  +VTY  LI D   K GR     L    +  +    N  
Sbjct: 518 RAMIDEVMHIFIKMKQQGLSPNVVTYGTLI-DALCKLGRVDDAVLQFNQMINEGVTPNNV 576

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           V++ ++ GLC V +WE+  +   ++  +G+ P +V +N ++  LCK+G +MEA +L+  M
Sbjct: 577 VFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              G  PD  S+NT+I G    +  D A   L
Sbjct: 637 VCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-L 97
           DVF Y  L++ LC   +  EA  LFD M+ +GI   +  Y  ++H  + K+G  S M  L
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLH-GYGKKGALSEMHDL 492

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +  +    N  +++ VI    +    +E      ++ ++GL P VVTY  LI+ LCK
Sbjct: 493 LNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCK 552

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G + +A     QM  +G  P++  FN+++ G 
Sbjct: 553 LGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGL 585



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 7/171 (4%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           D   YS +I   C   RL+     F  ++  G   + +  N L+    + +    AM  L
Sbjct: 83  DCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVL 142

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL---SEKGLVPGVVTYNILING 154
           L+ +      L +  Y+ ++ GLC   R EEAR+ L  +    +    P VV+YNI+ING
Sbjct: 143 LRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVING 202

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +G + +A  L ++M   G  PD  ++NT+I G     E DRA    ++
Sbjct: 203 FFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQ 250



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER------DKYELN 109
           L +A++LFD+++     A +   N L+      +   S+   +    R      +K   +
Sbjct: 24  LHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPD 83

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLL 168
              YS+VI   CR+GR E        + + G     +  N L+ GLC    + EA   LL
Sbjct: 84  CCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLL 143

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            QM E GC     S+NT+++G   +   + A   L
Sbjct: 144 RQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELL 178


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K + HVY + IN  CKI          D   +KG+  +V  Y +LI+G+C   
Sbjct: 26  EMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAG 85

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVY 113
            ++ A  L ++M  +G+    + YN LI D + K+G       +Q  +E+  +E +I   
Sbjct: 86  EMEAAEILVNEMQTRGLDVNQLIYNTLI-DGYCKRGLIDEAFKVQVIMEKKGFENDIYTL 144

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + + DGL ++ + EEA++ L  + EKG+VP VV+Y  LI+  CK+G  +EA KL  +MK+
Sbjct: 145 NTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKK 204

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  P++ ++N +I G   K     A
Sbjct: 205 AGGEPNAVTYNVLIDGHSKKGRMKEA 230



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 11/207 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +LTE+    N H YG  I+G+CK  E+++A         +G+ ++  +Y++LI+G C   
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK--QGRFSAMALLQTLERDKYELNIEV 112
            + EA ++   M  +G   ++ T N  I D   K  Q   +   LL  +E+     N+  
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNT-IADGLRKLNQPEEAKRWLLTMIEKGVVP-NVVS 178

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +ID  C+ G + EA+K   ++ + G  P  VTYN+LI+G  KKG + EA +L  +M+
Sbjct: 179 YTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMR 238

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KG FPD  ++ +++ G  +  + D A
Sbjct: 239 AKGIFPDIYTYTSLLHGECIFGKLDDA 265



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK   ID A K       KG   D++  +++ +GL   N+ +EA      M
Sbjct: 108 IYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTM 167

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G+   +V+Y  LI D + K+G F  A  L Q +++   E N   Y+++IDG  + GR
Sbjct: 168 IEKGVVPNVVSYTTLI-DIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGR 226

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA +  D++  KG+ P + TY  L++G C  G + +A +L  ++++KG   +  ++  
Sbjct: 227 MKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTA 286

Query: 186 VIQGFLVKNETDRA 199
           +I G   +  ++ A
Sbjct: 287 IISGLSKEGRSEEA 300



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 86/164 (52%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V  Y+ LI+   +  ++ E   +F++M  +GI A++  Y  +I+ N +      A AL  
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            L       N+  Y  +IDG+C+ G  E A   ++++  +GL    + YN LI+G CK+G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +I EA K+ V M++KG   D  + NT+  G    N+ + A  +L
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWL 164



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++ F+ + +      +G+ K+ + + A       I+KG+  +V  Y++LI+  C    
Sbjct: 132 MEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGN 191

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYS 114
             EA +LF +M   G     VTYN LI D   K+GR      L+   R K    +I  Y+
Sbjct: 192 FVEAKKLFQEMKKAGGEPNAVTYNVLI-DGHSKKGRMKEAYELRDEMRAKGIFPDIYTYT 250

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C  G+ ++A +  +++ +KGL   VVTY  +I+GL K+G   EA KL  +M E 
Sbjct: 251 SLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEA 310

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD   + +++   
Sbjct: 311 GLTPDDRVYTSLVSSL 326



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 65/125 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G   +   Y+ LI+G     R+KEA EL D+M A+GI  ++ TY  L+H         
Sbjct: 204 KAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLD 263

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   + +    LN+  Y+ +I GL + GR EEA K  D+++E GL P    Y  L+
Sbjct: 264 DAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLV 323

Query: 153 NGLCK 157
           + L K
Sbjct: 324 SSLHK 328


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   + G+C       A        +K   LD   ++ L++  C    +   +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL ++M++ G   +++TY  +I + + K+G    A+ LL+++     + N   Y++V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVI-NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GRW +A + + Q+ ++G  P  VT+N LIN LCKKG++ +A +LL QM   GC PD
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S++TVI G     +T+ A   L
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELL 519



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E     +  +Y   I+G+CK   ++ A          G+  +V  Y++++ GLC+  R
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA EL  +M  +    + VT+N L+ D + + G     + LL+ +       ++  Y+
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILV-DFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI+G C+ G  +EA   L  +S  G  P  V+Y I++ GLC  G  ++A++L+ QM ++
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FNT+I     K   ++A   LK+
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N +C+   +D A+         G   D+  Y++++ GLC   R  +  EL D+MV    
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 72  TAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +VT+N LI     + G F  +  +L  +       +I +Y+ +IDG+C+ G  E A 
Sbjct: 248 APNIVTFNTLI-GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++   GL P VV YN ++ GLC      EA++LL +M +K C  D  +FN ++  F
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 191 LVKNETDRASSFLKK 205
                 DR    L++
Sbjct: 367 CQNGLVDRVIELLEQ 381



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A EL  +M+
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMI 453

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ +   L ++G + +  ++   +K+     D+  +N VI
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 188 QGFLVKNETDRASSFL 203
                + ETDRA  F 
Sbjct: 574 SSLCKRWETDRAIDFF 589



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +        +D  ++     ++  +++LI  LC     +   E+  +M 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T ++  Y  +I D   K+G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 279 EHGCTPDIRMYATII-DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++ +K      VT+NIL++  C+ G++    +LL QM   GC PD  ++ TV
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTV 397

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +   D A   LK 
Sbjct: 398 INGFCKEGLIDEAVMLLKS 416



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +   + G+C    I  A++       KG      +Y  ++   C     + +V + 
Sbjct: 110 NAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVL 169

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A+G T +    N +++   E+     A+ LL+ L     E +I  Y+ V+ GLC  
Sbjct: 170 EAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMA 229

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            RW +  + +D++      P +VT+N LI  LC+ G+     ++L QM E GC PD   +
Sbjct: 230 KRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G   +   + A+  L +
Sbjct: 290 ATIIDGICKEGHLEVANEILNR 311



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C   R +D+       I++G   +   +++LIN LC    +++A+E
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 483 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR  +  +  D + +  +    V YN +I+ LCK+     A      M   GC P+ 
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 602 STYTMLIKGLASEGLAKEAQELLSE 626



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN +CK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA+EL + MV +GI+   + Y+  I     ++GR +  + +   ++      +  +Y+
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSS-IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYN 570

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY +LI GL  +G+  EA +LL ++ 
Sbjct: 571 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628

Query: 173 EKG 175
            +G
Sbjct: 629 SRG 631


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   I+G+ K       ++ +D+ + K        Y  L+N LC    L+ A 
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAE 315

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           ELF  M A G     V Y  LIH  + K GR   A +L   +    Y  ++  ++++IDG
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIH-GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G +E+A K  +++   G  P VVTY  +I GL K G +  A +++  M   GCFPD
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
           S ++  ++ GF      D A+  L
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLL 458



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 26  REIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           RE+   ++K G   D   Y+++I+GL      +EA+++ D M+A+      VTY  L++ 
Sbjct: 245 REVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNS 304

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +      A  L + +    +  N  +Y+ +I G  + GR +EA    D++ E G  P 
Sbjct: 305 LCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPD 364

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           V+T+ ++I+GLCK G   +A K   +M   GC P+  ++ T+IQG 
Sbjct: 365 VITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 10/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N  +Y   + G+C    +++ +             LD  +  S+I GLC   RL EA  +
Sbjct: 469 NLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 63  FDKMVAQGITAELVTYNPLIHD-NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           F +MV++G   +  TYN LI+     ++ R   A ALL  LE   Y  +   Y+ +  GL
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGL 588

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++G  + A K L++ S +G    VV Y  L  GLC +G +  A  L  +M  +G  PD+
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++  +I G +   + + A  F 
Sbjct: 649 AAYCCIINGLIKGKKLEDACKFF 671



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 16/215 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFN 54
           ++ E  ++ +   + + I+G+CK    + A K      +G C  +V  Y+++I GL    
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+  A  +   M+A G   + VTY  L+ D + K GR   A  LL  L++     N+++Y
Sbjct: 415 RVANAFRIMKGMIAHGCFPDSVTYICLL-DGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 114 SLVIDGLCRVGRWEEARKKL---DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           S ++ GLC  G  E     L    + + + L PG+     +I GLCK G + EA ++  +
Sbjct: 474 SSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCS--IIVGLCKTGRLDEACRIFQR 531

Query: 171 MKEKGCFPDSTSFNTVIQGFL--VKNETDRASSFL 203
           M  +GC PD+T++N +I G     +N  +RA + L
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALL 566



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 21  GMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+CKI E+D A+K       +G   DV  Y++L  GLC   ++  AV LF +MV QG   
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           +   Y  +I+   + +    A      +     +  +  Y+ ++  LC  G  +EA  + 
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 134 DQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           + +  +G LV  V+ Y+ LI+G CK   +  A KL   M  +G  P + +  ++  G + 
Sbjct: 707 EGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 193 KNETDRASSFLKK 205
             +T++A   L++
Sbjct: 767 SGKTEKAQELLQE 779



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 18/198 (9%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y     G+C   ++D A+       ++G   D   Y  +INGL    +L++A + FD+M
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEM 674

Query: 67  VAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           + +G    + TY  L+       +  E   RF  M     L R +   ++ +Y  +I G 
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGM-----LARGELVGSVMIYDALIHGF 729

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + + A K  + +  +G VP  VT   L +GL + G   +A +LL +M   G  P +
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789

Query: 181 TSFNTVIQGFLVKNETDR 198
            +F  ++ G    +E+ +
Sbjct: 790 ATFTAILDGLRKSDESGK 807



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 45/242 (18%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I G+ KI  + +A       I  G   D   Y  L++G C   RL EA +
Sbjct: 397 KPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456

Query: 62  LFDKMVAQGITAELVTYNPLIH-------------DNWE--------------------- 87
           L D++     +  L  Y+ L+              D +E                     
Sbjct: 457 LLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGL 516

Query: 88  -KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV--GRWEEARKKLDQLSEKGLVP 143
            K GR   A  + Q +  +  + +   Y+++I+GLCR    R E A   L  L   G +P
Sbjct: 517 CKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLP 576

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             VTY  L  GLCK G +  A K+L +   +G   D  ++  +  G   + + DRA S  
Sbjct: 577 DAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLF 636

Query: 204 KK 205
           ++
Sbjct: 637 QE 638



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 9/190 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF--NRLKEAVELFDKMVAQ 69
           I G+CK   +D A       + +G   D   Y+ LINGLC    NR++ A  L   +   
Sbjct: 513 IVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMV 572

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   + VTY PL     +      A+ +L+      +  ++  Y+ +  GLC  G+ + A
Sbjct: 573 GYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRA 632

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++  +G  P    Y  +INGL K   + +A K   +M  KG  P   ++  ++Q 
Sbjct: 633 VSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQA 692

Query: 190 FLVKNETDRA 199
                  D A
Sbjct: 693 LCHAGNVDEA 702



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 36/208 (17%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   DVF Y+ L+N L       +   + ++M+  GI     ++N LI      +   
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVG---------------------------- 124
            A+   + ++R + + ++  + +++D LC+ G                            
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 125 --------RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
                   R +EAR+   Q+ + G  P  + YN +I+GL K G   EA K+L  M  K C
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
            P   ++  ++         +RA    +
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFR 319



 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L      G+  +Y   I+G CK  ++D+A+K       +G        +SL +GL    +
Sbjct: 710 LARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI 82
            ++A EL  +M A G      T+  ++
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAIL 796


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   I+G+ K       ++ +D+ + K        Y  L+N LC    L+ A 
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAE 315

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           ELF  M A G     V Y  LIH  + K GR   A +L   +    Y  ++  ++++IDG
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIH-GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G +E+A K  +++   G  P VVTY  +I GL K G +  A +++  M   GCFPD
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
           S ++  ++ GF      D A+  L
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLL 458



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 10/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N  +Y   +NG+C    ++  +             LD  +  S+I GLC   RL EA  +
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 63  FDKMVAQGITAELVTYNPLIHD-NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           F +MV++G   +  TYN LI+     ++ R   A ALL  LE+  Y  +   Y+ +  GL
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++G  + A K L++ S +G    VV Y  L  GLC +G +  A  L  +M  +G  PD+
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++  +I G +   + + A  F 
Sbjct: 649 AAYCCIINGLIKVKKLEDACKFF 671



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 26  REIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           RE+   ++K G   D   Y+++I+GL      +EA+++ D M+A+      VTY  L++ 
Sbjct: 245 REVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNS 304

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +      A  L + +    +  N  +Y+ +I G  + GR +EA    D++ E G  P 
Sbjct: 305 LCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPD 364

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           V+T+ ++I+GLCK G   +A K   +M   GC P+  ++ T+IQG 
Sbjct: 365 VITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 22/218 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFN 54
           ++ E  ++ +   + + I+G+CK    + A K      +G C  +V  Y+++I GL    
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+  A  +   M+A G   + VTY  L+ D + K GR   A  LL  L++     N+++Y
Sbjct: 415 RVANAFRIMKGMIAHGCFPDSVTYICLL-DGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKG------LVPGVVTYNILINGLCKKGMIMEADKL 167
           S +++GLC  G  E   K LD L E+       L PG+     +I GLCK G + EA ++
Sbjct: 474 SSLVNGLCDGGSVE---KTLDDLFEQSKAAAETLDPGLCCS--IIVGLCKTGRLDEACRI 528

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFL--VKNETDRASSFL 203
             +M  +GC PD+T++N +I G     +N  +RA + L
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALL 566



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 21  GMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+CKI E+D A+K       +G   DV  Y++L  GLC   ++  AV LF +MV QG   
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           +   Y  +I+   + +    A      +     +  +  Y+ ++  LC  G  +EA  + 
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 134 DQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           + +  +G LV  V+ Y+ LI+G CK   +  A KL   M  +G  P + +  ++  G + 
Sbjct: 707 ESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 193 KNETDRASSFLKK 205
             +T++A   L++
Sbjct: 767 SGKTEKAQELLQE 779



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y     G+C   ++D A+       ++G   D   Y  +INGL    +L++A + FD+M
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM 674

Query: 67  VAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           + +G    + TY  L+       +  E   RF +M     L R +   ++ +Y  +I G 
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFESM-----LARGELVGSVMIYDALIHGF 729

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + + A K  + +  +G VP  VT   L +GL + G   +A +LL +M   G  P +
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789

Query: 181 TSFNTVIQGFLVKNETDR 198
            +F  ++ G    +E+ +
Sbjct: 790 ATFTAILDGLRKSDESGK 807



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 36/208 (17%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   DVF Y+ L+N L       +   + ++M+  GI     ++N LI      +   
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVG---------------------------- 124
            A+   + ++R + + ++  + +++D LC+ G                            
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 125 --------RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
                   R +EAR+   Q+ + G  P  + YN +I+GL K G   EA K+L  M  K C
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
            P   ++  ++         +RA    +
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFR 319



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L      G+  +Y   I+G CK  ++D+A+K       +G        +SL +GL    +
Sbjct: 710 LARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI 82
            ++A EL  +M A G      T+  ++
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAIL 796


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   + G+C       A        +K   LD   ++ L++  C    +   +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           EL ++M++ G   +++TY  +I + + K+G    A+ LL+++     + N   Y++V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVI-NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GRW +A + + Q+ ++G  P  VT+N LIN LCKKG++ +A +LL QM   GC PD
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S++TVI G     +T+ A   L
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELL 519



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E     +  +Y   I+G+CK   ++ A          G+  +V  Y++++ GLC+  R
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA EL  +M  +    + VT+N L+ D + + G     + LL+ +       ++  Y+
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILV-DFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI+G C+ G  +EA   L  +S  G  P  V+Y I++ GLC  G  ++A++L+ QM ++
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FNT+I     K   ++A   LK+
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N +C+   +D A+         G   D+  Y++++ GLC   R  +  EL D+MV    
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +VT+N LI     + G F  +  +L  +       +I +Y+ +IDG+C+ G  E A 
Sbjct: 248 APNIVTFNTLI-GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++   GL P VV YN ++ GLC      EA++LL +M +K C  D  +FN ++  F
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 191 LVKNETDRASSFLKK 205
                 DR    L++
Sbjct: 367 CQNGLVDRVIELLEQ 381



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +        +D  ++     ++  +++LI  LC     +   E+  +M 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T ++  Y  +I D   K+G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 279 EHGCTPDIRMYATII-DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++ +K      VT+NIL++  C+ G++    +LL QM   GC PD  ++ TV
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTV 397

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +   D A   LK 
Sbjct: 398 INGFCKEGLIDEAVMLLKS 416



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A EL  +M+
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMI 453

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 513

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ +   L ++G + +  ++   +K+     D+  +N VI
Sbjct: 514 EALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 188 QGFLVKNETDRASSFL 203
                + ETDRA  F 
Sbjct: 574 SSLCKRWETDRAIDFF 589



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +   + G+C    I  A++       KG      +Y  ++   C     + +V + 
Sbjct: 110 NAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVL 169

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A+G T +    N +++   E+     A+ LL+ L     E +I  Y+ V+ GLC  
Sbjct: 170 EAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMA 229

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            RW +  + +D++      P +VT+N LI  LC+ G+     ++L QM E GC PD   +
Sbjct: 230 KRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G   +   + A+  L +
Sbjct: 290 ATIIDGICKEGHLEVANEILNR 311



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C   R +D+       I++G   +   +++LIN LC    +++A+E
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 483 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR  +  +  D + +  +    V YN +I+ LCK+     A      M   GC P+ 
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 602 STYTMLIKGLASEGLAKEAQELLSE 626



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN +CK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA+EL + MV +GI+   + Y+  I     ++GR +  + +   ++      +  +Y+
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSS-IACALSREGRVNKVIQMFDNIKDTTIRSDAVLYN 570

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY +LI GL  +G+  EA +LL ++ 
Sbjct: 571 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628

Query: 173 EKG 175
            +G
Sbjct: 629 SRG 631


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  + + +   +NG+CK   +  AI       ++G   DV+ Y+S+I+GLC    +KEAV
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+ D+M+ +  +   VTYN LI    ++     A  L + L       ++  ++ +I GL
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C       A +  +++  KG  P   TYN+LI+ LC KG + EA  +L QM+  GC    
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++NT+I GF   N+T  A
Sbjct: 471 ITYNTLIDGFCKANKTREA 489



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           + ++ +  + + Y   I+G+CK+ E+       D  I +    +   Y++LI+ LC  N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA EL   + ++GI  ++ T+N LI      +    AM L + +     E +   Y++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC  G+ +EA   L Q+   G    V+TYN LI+G CK     EA+++  +M+  G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +S ++NT+I G       + A+  + +
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK  +++ A +       KGI  DV  ++SLI GLC     + A+ELF
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M ++G   +  TYN LI     K     A+ +L+ +E      ++  Y+ +IDG C+ 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA +  D++   G+    VTYN LI+GLCK   + +A +L+ QM  +G  PD  ++
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N+++  F    +  +A+  ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQ 564



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 22/217 (10%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y + I+ +C   ++D A+         G    V  Y++LI+G C  N
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA------LLQTLERDKYEL 108
           + +EA E+FD+M   G++   VTYN LI D   K  R    A      +++  + DKY  
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLI-DGLCKSRRVEDAAQLMDQMIMEGQKPDKY-- 541

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               Y+ ++   CR G  ++A   +  ++  G  P +VTY  LI+GLCK G +  A KLL
Sbjct: 542 ---TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             ++ KG      ++N VIQG   K +T  A +  ++
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFRE 635



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 19  INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           ++G CK   ++ A+        + G   D + +++L+NGLC    +K A+E+ D M+ +G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ TYN +I    +      A+ +L  +       N   Y+ +I  LC+  + EEA 
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEAT 385

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +    L+ KG++P V T+N LI GLC       A +L  +M+ KGC PD  ++N +I   
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445

Query: 191 LVKNETDRASSFLKK 205
             K + D A + LK+
Sbjct: 446 CSKGKLDEALNMLKQ 460



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C  R    A++       KG   D F Y+ LI+ LC+  +L EA+ +  +M   G 
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              ++TYN LI    +      A  +   +E      N   Y+ +IDGLC+  R E+A +
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +DQ+  +G  P   TYN L+   C+ G I +A  ++  M   GC PD  ++ T+I G  
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586

Query: 192 VKNETDRASSFLK 204
                + AS  L+
Sbjct: 587 KAGRVEVASKLLR 599



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 10/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   + + I  +C+  ++  AI         G+  D   +++++ G      L  A+ 
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE-RDKYELNIEVYSLVIDG 119
           + ++MV  G +   V+ N ++H  + K+GR   A+  +Q +  +D +  +   ++ +++G
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVH-GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G  + A + +D + ++G  P V TYN +I+GLCK G + EA ++L QM  + C P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
           + ++NT+I     +N+ + A+   +
Sbjct: 365 TVTYNTLISTLCKENQVEEATELAR 389



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 14  VYGIRINGMCK---IREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK    RE +    +    G+  +   Y++LI+GLC   R+++A +L D+M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G   +  TYN L+           A  ++Q +  +  E +I  Y  +I GLC+ GR 
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNT 185
           E A K L  +  KG+      YN +I GL +K    EA  L  +M E+    PD+ S+  
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651

Query: 186 VIQGF 190
           V +G 
Sbjct: 652 VFRGL 656



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + +    G   D+  Y +LI+GLC   R++ A +L   +  +GI      YNP+I   + 
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622

Query: 88  KQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGV 145
           K+    A+ L  + LE+++   +   Y +V  GLC  G    EA   L +L EKG VP  
Sbjct: 623 KRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            +  +L  GL    M     KL+  + +K  F +
Sbjct: 683 SSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSE 716



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++S  G+ P V T+N+LI  LC+   +  A  +L  M   G  PD  +F TV+QG++ + 
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238

Query: 195 ETDRA 199
           + D A
Sbjct: 239 DLDGA 243



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  ++++I  LCR  +   A   L+ +   GLVP   T+  ++ G  ++G +  A ++ 
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIR 247

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            QM E GC   + S N ++ GF  +   + A +F+++
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  I+ +CK+  +D A+ K       G+  ++FV++SL+ GLCT ++ ++A E + +M+
Sbjct: 416 YGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QGI  ++V +N ++ +   K     A  L+  +ER      +  Y+ +I G C VGR +
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA K LD +   GL P   TYN L++G C+ G I +A  +  +M   G  P   +++T++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595

Query: 188 QGFLVKNETDRA 199
            G         A
Sbjct: 596 HGLFTTRRFSEA 607



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C+   ID A       ++ GI   V  YS++++GL T  R  EA EL+  M
Sbjct: 555 TYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNM 614

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G    +  YN +++   +      A  L Q+L    ++L I  ++++I  L + GR 
Sbjct: 615 ITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRN 674

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A      +S  GLVP V TY ++   L ++G + E D L   M++ G  P+S   N +
Sbjct: 675 EDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNAL 734

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L + +  RA ++L K
Sbjct: 735 VRRLLHRGDITRAGAYLCK 753



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING     ++D A       + +GI  +V  Y+++I+GLC    +  A  +F +M+
Sbjct: 206 YAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  +  TYN LIH           + +L+ +     + +   Y  +++ LC  GR  
Sbjct: 266 DKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCR 325

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EAR   D +  KG+ P V  Y ILI+G   KG + E   LL  M E G  PD   FN + 
Sbjct: 326 EARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF 385

Query: 188 QGFLVKNETDRASSFLKK 205
             +  K   D A     K
Sbjct: 386 TAYAKKAMIDEAMHIFNK 403



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++    K + + YG  +N +C   + RE     DS I+KGI  +V +Y  LI+G  T  
Sbjct: 298 EMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKG 357

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E  +L + MV  G++ +   +N +     +K     AM +   +++     ++  Y 
Sbjct: 358 ALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYG 417

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID LC++GR ++A  K +Q+  +G+ P +  +N L+ GLC      +A +   +M  +
Sbjct: 418 ALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ 477

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD   FNT++     K +  +A   +
Sbjct: 478 GIRPDVVFFNTILCNLCTKGQVMKAQRLI 506



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R ++     G+  D + Y SL+N LC   R +EA  LFD M+ +GI   +  Y  LIH 
Sbjct: 293 VRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIH- 351

Query: 85  NWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            +  +G  S M  LL  +  +    +  +++++     +    +EA    +++ ++GL P
Sbjct: 352 GYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSP 411

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            VV Y  LI+ LCK G + +A     QM  +G  P+   FN+++ G    ++ ++A  F
Sbjct: 412 DVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 11/189 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDK 65
            Y I I   C++  ++         +K G  ++  V + L+ GLC   RL EA++ L  +
Sbjct: 96  TYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKR 155

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M   G T ++V+YN L+     ++    A+ LL  +   +      N+  Y++VI+G   
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFT 215

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++A     ++ ++G+ P VVTY  +I+GLCK  ++  A+ +  QM +KG  PD+ +
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 183 FNTVIQGFL 191
           +N +I G+L
Sbjct: 276 YNCLIHGYL 284



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 15/210 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ ++  + N   Y   I+G+CK + +D A       I KG+  D   Y+ LI+G  + 
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286

Query: 54  NRLKEAVELFDKMVAQGITAELVTY----NPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            + KE V + ++M A G+  +  TY    N L ++   ++ RF    L  ++ R   + N
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARF----LFDSMIRKGIKPN 342

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           + +Y ++I G    G   E    L+ + E GL P    +NI+     KK MI EA  +  
Sbjct: 343 VAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFN 402

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +MK++G  PD  ++  +I         D A
Sbjct: 403 KMKQQGLSPDVVNYGALIDALCKLGRVDDA 432



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA----LLQTLERDKYELNIE 111
           L +A++LFD ++     A ++ +N L+       GR S+      ++    R   E  I+
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 112 V------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           V      YS++I   CR+GR E        + + G     +  N L+ GLC    + EA 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 166 KLLV-QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +LV +M E GC PD  S+NT+++GF  +   + A   L 
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLH 189



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 60  VELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSL 115
           V LF++M+ +    +T +  TY+ LI   + + GR     A    + +  + +N  V + 
Sbjct: 76  VSLFNRMIRECTIKVTPDPCTYSILI-GCFCRMGRLEHGFATFGLILKSGWRVNNIVINQ 134

Query: 116 VIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE- 173
           ++ GLC   R  EA   L  ++ E G  P VV+YN L+ G C +    EA +LL  M + 
Sbjct: 135 LLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADS 194

Query: 174 --KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             + C P+  S+  VI GF  + + D+A +   + M
Sbjct: 195 QGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMM 230



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 29/195 (14%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N  +Y I +NG+           K  C+D                  EA +LF  + ++ 
Sbjct: 622 NIWIYNIILNGL----------SKNNCVD------------------EAFKLFQSLCSKD 653

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              E+ T+N +I   ++      AM L  T+       ++  Y L+ + L   G  EE  
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFD 713

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                + + G  P     N L+  L  +G I  A   L ++ EK  F    S   ++   
Sbjct: 714 DLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKN-FSLEASTTAMLISL 772

Query: 191 LVKNETDRASSFLKK 205
           L ++E    ++ L +
Sbjct: 773 LSRDEYHHHATSLPE 787


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y I I+  C+  ++D+AI         GI + V+ Y+SLING C   
Sbjct: 391 EMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLG 450

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  AV  FD+M+ +G+   +V+Y  LI     K     A  L   +       N   ++
Sbjct: 451 NLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFT 510

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  L R  R  +A +  D++ E+ ++P  VTYN++I G CK+G  ++A +LL QM +K
Sbjct: 511 TLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK 570

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+ ++  +I           A  F+
Sbjct: 571 GLVPDTYTYRPLISSLCSTGRVCEAKKFI 599



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G    +FVY++LIN LC   +  EA  LF +M  +G+ A  VTY+ LI D++ ++G+ 
Sbjct: 359 KVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILI-DSFCRRGKL 417

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+  L  +     ++ +  Y+ +I+G C++G    A    D++ +KGL P VV+Y  L
Sbjct: 418 DTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSL 477

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKNM 207
           I+G C KG + EA +L  +M  KG  P++ +F T+I      N    A       L++NM
Sbjct: 478 ISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNM 537



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ING CK+  + +A       I KG+   V  Y+SLI+G C   +L EA  L+ +
Sbjct: 437 YPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHE 496

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +GI     T+  LI   +       A  L   +       N   Y+++I+G C+ G 
Sbjct: 497 MTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGN 556

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A + L+Q+ +KGLVP   TY  LI+ LC  G + EA K +  +  +    +   ++ 
Sbjct: 557 TVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSA 616

Query: 186 VIQGF 190
           ++ G+
Sbjct: 617 LLHGY 621



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 8/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +QR + +  +Y   I+G  K   +  A       I +G   ++  Y++LIN LC   
Sbjct: 671 NMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAG 730

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A  L+ +M+    T   VTY   + D+  ++G       L          N   Y+
Sbjct: 731 LMDKAELLWKEMLVSNSTPNHVTYCCFL-DHLAREGSMEKAVQLHNDMLKGLLANTVSYN 789

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++ G C++GR EEA K LD++ +  + P  +TY+ +I   C++G +  A +    M  K
Sbjct: 790 ILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNK 849

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD+ ++N +I G  +  E  +A
Sbjct: 850 GLKPDTLAYNFLIYGCCIAGELGKA 874



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 5/202 (2%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + ++Y   I   C+++    A +     +   L+V VY+ LI+GLC   R+ EAVE+ 
Sbjct: 225 RPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIK 284

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + ++ +G+TA  VTY  L+    + Q       ++  +    +       S +++GL R 
Sbjct: 285 NGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRK 344

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A   ++++ + G +P +  YN LIN LCK G   EA+ L  +M EKG   +  ++
Sbjct: 345 GKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTY 404

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           + +I  F  + + D A  FL K
Sbjct: 405 SILIDSFCRRGKLDTAIHFLGK 426



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  K     Y   I+G C   ++  A +       KGI  + + +++LI+ L   N
Sbjct: 461 EMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRAN 520

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ +A  LFD+M+ Q +    VTYN +I  + ++     A  LL  + +     +   Y 
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYR 580

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  LC  GR  EA+K +D L  +      + Y+ L++G CK+G + +A  +  +M ++
Sbjct: 581 PLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKR 640

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G   D   +  +I G + + +T      LK
Sbjct: 641 GVDMDLVCYAVLIDGTIKEQDTSAVFGLLK 670



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 12/197 (6%)

Query: 15  YGIRINGMCKIREIDSAIKKGIC---------LDVFVYSSLINGLCTFNRLKEAVELFDK 65
           Y + I+G   I+E D++   G+           D  +Y+S+I+G      +K+A  ++D 
Sbjct: 649 YAVLIDG--TIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDI 706

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ +G T  +VTY  LI++  +      A  L + +       N   Y   +D L R G 
Sbjct: 707 MIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGS 766

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+A +  + +  KGL+   V+YNIL+ G CK G + EA KLL +M +   FPD  +++T
Sbjct: 767 MEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYST 825

Query: 186 VIQGFLVKNETDRASSF 202
           +I     +   D A  F
Sbjct: 826 IIYQCCRRGNLDGAIEF 842



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 84/156 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID   ++   L+   YS+L++G C   RL++A+ +  +MV +G+  +LV Y  LI    +
Sbjct: 599 IDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIK 658

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +Q   +   LL+ +   +   +  +Y+ +IDG  + G  ++A    D + ++G  P +VT
Sbjct: 659 EQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVT 718

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           Y  LIN LCK G++ +A+ L  +M      P+  ++
Sbjct: 719 YTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY + I+G+CK + +  A       I+KG+      Y +L+ GLC     +    + 
Sbjct: 260 NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVM 319

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+  G        + L+     K     A  L+  +++     ++ VY+ +I+ LC+ 
Sbjct: 320 DEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKD 379

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+++EA     ++ EKGL    VTY+ILI+  C++G +  A   L +M   G       +
Sbjct: 380 GKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPY 439

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I G         A SF 
Sbjct: 440 NSLINGHCKLGNLSAAVSFF 459



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    N   Y + I G CK          ++  ++KG+  D + Y  LI+ LC+  
Sbjct: 531 EMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTG 590

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R+ EA +  D +  +      + Y+ L+H  + K+GR   A+ + + + +   ++++  Y
Sbjct: 591 RVCEAKKFIDDLHREHFKLNEMCYSALLH-GYCKEGRLRDALGVCREMVKRGVDMDLVCY 649

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG  +          L  + ++ L P  V Y  +I+G  K G + +A  +   M +
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMID 709

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GC P+  ++ T+I         D+A    K+
Sbjct: 710 EGCTPNIVTYTTLINELCKAGLMDKAELLWKE 741



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  D  +++ +  +   Y+ +I G C      +A EL ++MV +G+  +  TY PLI   
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A   +  L R+ ++LN   YS ++ G C+ GR  +A     ++ ++G+   +
Sbjct: 587 CSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDL 646

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           V Y +LI+G  K+        LL  M ++   PD   + ++I G+
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGY 691



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 35/172 (20%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R   M K  ++ + + KG+  +   Y+ L+ G C   R++EA +L D+M+   I  + +T
Sbjct: 763 REGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCIT 822

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           Y+ +I+                                     CR G  + A +  D + 
Sbjct: 823 YSTIIYQ-----------------------------------CCRRGNLDGAIEFWDTML 847

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            KGL P  + YN LI G C  G + +A +L   M  +G  P+  +  ++  G
Sbjct: 848 NKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHG 899


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K +   Y I I+G+CK   +D+A         KG   D+  Y++LI G C   R
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
             +  +L   M+ + I+  +VT++ LI D++ K+G+   A  LL+ + +     N   Y+
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLI-DSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+  R EEA + +D +  KG  P ++T+NILING CK   I +  +L  +M  +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432

Query: 175 GCFPDSTSFNTVIQGF 190
           G   ++ ++NT++QGF
Sbjct: 433 GVIANTVTYNTLVQGF 448



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 42/228 (18%)

Query: 14  VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   +NG+C   ++ E    +D  ++ G    +   ++L+NGLC   ++ +AV L D+M
Sbjct: 160 IFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRM 219

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---- 122
           V  G     VTY P+++   +      AM LL+ +E    +L+   YS++IDGLC+    
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSL 279

Query: 123 -------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                           GRW++  K L  + ++ + P VVT+++L
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+   K+G + EAD+LL +M ++G  P++ ++N++I GF  +N  + A
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   + I ING CK   ID  ++       +G+  +   Y++L+ G C   +L+ A +LF
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +  ++V+Y  L+    DN E +    A+ +   +E+ K EL+I +Y ++I G+
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELE---KALEIFGKIEKSKMELDIGIYMIIIHGM 518

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+      YNI+I+ LC+K  + +AD L  +M E+G  PD 
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDE 578

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L  ++   A+  +++
Sbjct: 579 LTYNILIRAHLGDDDATTAAELIEE 603



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 99/200 (49%), Gaps = 9/200 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK +   Y   I G C     D         IK+ I  +V  +S LI+      +L+EA 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L  +M+ +GI    +TYN LI D + K+ R   A+ ++  +     + +I  ++++I+G
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLI-DGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+  R ++  +   ++S +G++   VTYN L+ G C+ G +  A KL  +M  +   PD
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472

Query: 180 STSFNTVIQGFLVKNETDRA 199
             S+  ++ G     E ++A
Sbjct: 473 IVSYKILLDGLCDNGELEKA 492



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 13/188 (6%)

Query: 31  AIKKGICLDVF---VYSSLINGLCTFNRLKEAVE----------LFDKMVAQGITAELVT 77
            IK    +D+F   + S  +  +  FNRL  A+           L  +M ++GI   + T
Sbjct: 66  GIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
            + +I+     +    A + +  + +  YE +  +++ +++GLC   R  EA + +D++ 
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           E G  P ++T N L+NGLC  G + +A  L+ +M E G  P+  ++  V+       +T 
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245

Query: 198 RASSFLKK 205
            A   L+K
Sbjct: 246 LAMELLRK 253


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 8/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTF 53
           F + E+    N   Y   I+G+C+   ID A+      K   C  +V+ Y++LI GLC  
Sbjct: 247 FRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK 306

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           N + +A+ L D+M+ + +  +L+TYN LI          SA  LL  ++      +   Y
Sbjct: 307 N-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTY 365

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
              ID LC+  R EEAR+  D L+E+G+   V+ Y++LI+G CK G + EA  L  +M  
Sbjct: 366 GCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS 425

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K C P++ +FN +I G         A S   +
Sbjct: 426 KNCSPNAYTFNALIHGLCSAGNLKEALSLFDQ 457



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 10/202 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD LTE+    N  +Y + I+G CK+ ++D A       + K    + + +++LI+GLC+
Sbjct: 385 FDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCS 444

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              LKEA+ LFD+MV  G+   + T+N LI     KQG F  A   LQ +     +    
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILI-GRMLKQGDFDDAHKCLQKMMSSGEKPVAR 503

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+  I+  C  G+ +EA   + Q+ E+G+ P   TY  LI    K G+   A  +L  M
Sbjct: 504 TYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563

Query: 172 KEKGCFPDSTSFNTVIQGFLVK 193
            +  C P   +F ++I+    K
Sbjct: 564 FDADCEPSHHTFLSLIKQLFDK 585



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I+ +CK        R  DS  ++G+  +V +YS LI+G C   ++ EA  LF+KM
Sbjct: 364 TYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM 423

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +++  +    T+N LIH          A++L   + +   +  +  ++++I  + + G +
Sbjct: 424 LSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDF 483

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K L ++   G  P   TYN  I   C  G + EA+ ++VQMKE+G  PD  ++ ++
Sbjct: 484 DDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSL 543

Query: 187 IQGF 190
           I+ +
Sbjct: 544 IKAY 547



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 11  NFHVYGIRINGMCK------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           N + Y   I G+C+      +  +D  +++ +  D+  Y+SLI G C    L  A  L  
Sbjct: 292 NVYTYTALIKGLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLS 351

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            M  +G+  +  TY   I D   K  R   A  L  +L  +    N+ +YS++IDG C+V
Sbjct: 352 LMKERGLVPDQRTYGCFI-DFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKV 410

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA    +++  K   P   T+N LI+GLC  G + EA  L  QM + G  P   +F
Sbjct: 411 GKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           N +I   L + + D A   L+K M
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMM 494



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y   I G C+   +DSA +       +G+  D   Y   I+ LC  N
Sbjct: 317 EMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSN 376

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R++EA  LFD +  +G++A ++ Y+ LI D + K G+   A  L + +       N   +
Sbjct: 377 RVEEARRLFDSLTEEGVSANVIMYSVLI-DGYCKVGKVDEAGCLFEKMLSKNCSPNAYTF 435

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC  G  +EA    DQ+ + GL P V T+NILI  + K+G   +A K L +M  
Sbjct: 436 NALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMS 495

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G  P + ++N  I+ +    +   A   +
Sbjct: 496 SGEKPVARTYNAFIEVYCSAGKVQEAEDMM 525



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 16/163 (9%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG------R 91
           L +  Y+ L+  L  F  + E  +L+ +M+ + ++ ++ T+N +I + + K G      +
Sbjct: 155 LSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMI-NVYCKMGFVKEAKQ 213

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           F    +   L  D +       +  I G CR    + A +  +++  +      V+YN L
Sbjct: 214 FMCKMIQAGLSPDYF-----TSTSFILGYCRSKDVDSAFRVFEEMPNRN----EVSYNQL 264

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           I+GLC+ G I EA  L V+MK+  C+P+  ++  +I+G   KN
Sbjct: 265 IHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN 307



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 20  NGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           + M K+ E D  I       K G   D   Y  LI+G+C    L  A++L D+M  +GI+
Sbjct: 609 SNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGIS 668

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
              + +N +I    + Q    A  +++ +    +   +E    +I GL   G  E     
Sbjct: 669 PSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSV 728

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             +L   G     + + ILI+G+ K+G++ E  +L  +M++ GC     +++ + Q
Sbjct: 729 FKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L + +E+     + + Y  +I G+C+V     A K LDQ+ ++G+ P  + +N +I+  C
Sbjct: 623 LFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCC 682

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K     EA  ++  M   G  P      T+I G   + ET+R +S  KK
Sbjct: 683 KLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKK 731



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 51/96 (53%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           D  +L+++ Y+ ++  L R G  +E  +   ++ E+ +   + T+N++IN  CK G + E
Sbjct: 151 DITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKE 210

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           A + + +M + G  PD  +  + I G+    + D A
Sbjct: 211 AKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSA 246



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK+  +  A+K       +GI     V++++I+  C   +  EA  + + M+  G 
Sbjct: 643 ISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGH 702

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +L     LI   +E+       ++ + L    Y  +   + ++IDG+ + G  EE  +
Sbjct: 703 SPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQ 762

Query: 132 KLDQLSEKGLVPGVVTYNILINGL 155
             +++ + G      TY+IL   L
Sbjct: 763 LFEEMEKNGCNFSPRTYSILTQKL 786


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 6/202 (2%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LF 63
           F  N   YG  ++G+CK   ID A   + K    +V  +++L+NG     RL EA   ++
Sbjct: 311 FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVY 370

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM+  G   ++ T++ L+ +   K+G F SA+ L+  ++    + N+  Y+++IDG C+
Sbjct: 371 DKMINNGYVPDVFTFSTLV-NGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCK 429

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ EEA   L ++  KG     V YN LI+ LCK G I EA  +  +M  KGC PD  +
Sbjct: 430 KGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFT 489

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           FN++I G    +E + A +  +
Sbjct: 490 FNSLIFGLCRVDEMEDALALYR 511



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  N   Y   I+ +CK  +I  A+        KG   D+F ++SLI GLC  +
Sbjct: 442 EMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVD 501

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A+ L+  MV +G+ A  VT+N LIH    +     A+ L+  +      L+   Y+
Sbjct: 502 EMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYN 561

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  LC+ G  E+     +++  KGL P ++T NILING C  G +  A + +  M  +
Sbjct: 562 GLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHR 621

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N++I G   +     A +  +K
Sbjct: 622 GFSPDIVTYNSLINGLCKRGRIQEALNLFEK 652



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 12/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T+     N  +Y   I+ + K   +D A+K        G   DV  ++++I G C  N
Sbjct: 235 DMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLN 294

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ E  +L D+M+ +G T   +TY  L+H   +      A ALL  +       N+  ++
Sbjct: 295 RVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGP----NVVHFN 350

Query: 115 LVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +++G  R GR  EA   + D++   G VP V T++ L+NGLCKKG+   A +L+  M  
Sbjct: 351 TLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDA 410

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC P+  ++  +I GF  K + + A   L++
Sbjct: 411 KGCKPNLNTYTILIDGFCKKGQLEEAGLILRE 442



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G   DVF +S+L+NGLC       A+EL + M A+G    L TY  LI D + K
Sbjct: 371 DKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILI-DGFCK 429

Query: 89  QGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G+     L L+ +    + LN   Y+ +I  LC+ G+  EA     ++S KG  P + T
Sbjct: 430 KGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFT 489

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +N LI GLC+   + +A  L   M  +G   +S +FNT+I  FL + E   A
Sbjct: 490 FNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +  K N + Y I I+G CK  +++ A       + KG  L+   Y++LI+ LC   
Sbjct: 407 DMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHG 466

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA+++F +M ++G   ++ T+N LI           A+AL + +  +    N   ++
Sbjct: 467 KIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFN 526

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I    R G  +EA K ++ +  +G     +TYN LI  LCK G + +   L  +M  K
Sbjct: 527 TLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRK 586

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P   + N +I GF    +   A  F++
Sbjct: 587 GLTPSIITCNILINGFCTAGKVHNALEFMR 616



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  +    N   +   I+   +  EI  A+K       +G  LD   Y+ LI  LC   
Sbjct: 512 DMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTG 571

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++ + LF++M+ +G+T  ++T N LI+         +A+  ++ +    +  +I  Y+
Sbjct: 572 AVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYN 631

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+ GR +EA    ++L  +G+ P  +TYN LI  LC++G   +A  LL +  E 
Sbjct: 632 SLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVEN 691

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++N ++  F
Sbjct: 692 GFVPNDVTWNILVYNF 707



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KG+  + + +  ++  LC  N +  A  L   M   G     + Y  LI D   K+ R
Sbjct: 202 LSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLI-DALSKRDR 260

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ LL+ +       ++  ++ VI G CR+ R  E  K +D++  KG  P  +TY  
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L++GLCK   I EA  LL ++      P+   FNT++ GF+     + A++F+   M
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKM 373



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 9/153 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I  +CK   ++         I+KG+   +   + LING CT  ++  A+E    M
Sbjct: 559 TYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDM 618

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G + ++VTYN LI +   K+GR   A+ L + L+ +  + +   Y+ +I  LCR G 
Sbjct: 619 IHRGFSPDIVTYNSLI-NGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGA 677

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +++A   L +  E G VP  VT+NIL+    K+
Sbjct: 678 FDDACFLLYRGVENGFVPNDVTWNILVYNFGKQ 710



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +++ L   N    A  +F  M+++G++    T+  ++          +A  LL+ + 
Sbjct: 178 YNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMT 237

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +     N  +Y  +ID L +  R +EA K L+++   G  P V T+N +I G C+   ++
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVL 297

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E  KL+ +M  KG  P+  ++  ++ G       D A + L K
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSK 340


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 95/153 (62%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C  +  K+A++L D+M  +G T ++VTYN +++   ++     A+  L+ L     E N 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y++V+ GLC   RWE+A + + ++ +KG  P VVT+N+LI+ LC+KG++  A ++L Q
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + + GC P+S S+N ++  F  + + D+A +FL
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 155



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + +NG+C+   +D AI+        G   +   Y+ ++ GLCT
Sbjct: 15  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 74

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R ++A EL  +M  +G    +VT+N LI     K     A+ +L+ + +     N   
Sbjct: 75  AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 134

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++   C+  + ++A   LD +  +G  P +V+YN L+  LC+ G +  A +LL Q+K
Sbjct: 135 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 194

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KGC P   S+NTVI G     +T  A   L +
Sbjct: 195 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 227



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+C     + A        +KG   +V  ++ LI+ LC    ++ A+E+ 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++   G T   ++YNPL+H   +++    AMA L  +       +I  Y+ ++  LCR 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + L QL +KG  P +++YN +I+GL K G   EA +LL +M  KG  PD  ++
Sbjct: 181 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 240

Query: 184 NTVIQGFLVKNETDRA 199
           +T+  G   ++  + A
Sbjct: 241 STIAAGLCREDRIEDA 256



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++  CK +++D A       + +G   D+  Y++L+  LC    +  AVEL 
Sbjct: 131 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 190

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G    L++YN +I D   K G+   A+ LL  +     + +I  YS +  GLCR
Sbjct: 191 HQLKDKGCAPVLISYNTVI-DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 249

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R E+A +   ++ + G+ P  V YN +I GLCK+     A  L   M   GC P+ ++
Sbjct: 250 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 309

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I+G   +     A   L
Sbjct: 310 YTILIEGLAYEGLIKEARDLL 330



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I+ +C+   ++ A+       K G   +   Y+ L++  C   ++ +A+   
Sbjct: 96  NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 155

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV++G   ++V+YN L+           A+ LL  L+       +  Y+ VIDGL + 
Sbjct: 156 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 215

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + L+++  KGL P ++TY+ +  GLC++  I +A +   ++++ G  P++  +
Sbjct: 216 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 275

Query: 184 NTVIQGFLVKNETDRA 199
           N +I G   + ET  A
Sbjct: 276 NAIILGLCKRRETHSA 291



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +C+  E+D A++       KG    +  Y+++I+GL    + KEA+EL ++MV
Sbjct: 170 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 229

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +++TY+ +      +     A+     ++      N  +Y+ +I GLC+     
Sbjct: 230 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 289

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            A      +   G +P   TY ILI GL  +G+I EA  LL ++  +G
Sbjct: 290 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           ++ G   AM LL  +       +I  Y++V++G+C+ GR ++A + L  L   G  P  V
Sbjct: 4   KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 63

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +YNI++ GLC      +A++L+ +M +KGC P+  +FN +I     K   + A   L++
Sbjct: 64  SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + KG+  D+  YS++  GLC  +R+++A+  F K+   GI    V YN +I    +
Sbjct: 225 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 284

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           ++   SA+ L   +  +    N   Y+++I+GL   G  +EAR  LD+L  +G+V
Sbjct: 285 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           CK+    +A KLL +M++KGC PD  ++N V+ G   +   D A  FLK
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLK 51


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 9/188 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I + G+CK  E+D A +        G+ L+V  YS +I+G C  +R+ +A+E+F  M
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTM 134

Query: 67  VAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G    ++VT+N L+      +    A  L + + +   E N+  YS ++DGLC+ GR
Sbjct: 135 SAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGR 194

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA +  +++ EK  VP +V Y   + GLCK   + EA     +M  KG   D+ +F+T
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 186 VIQGFLVK 193
           VI G L K
Sbjct: 255 VI-GILCK 261



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK +++D A          G+  DV  YS+L++GLC   +L  A +L 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLL 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +G+  +  T +  I +   K G+   A++ L+T++      ++  Y+ ++DGLC+
Sbjct: 398 EEMSKEGVFPDSFT-DASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR +EA   L ++      P V +Y I+I  LC+ G    A  +  +M ++G  PD+  
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 183 FNTVIQGFLVKNETDRASSFLKKNM 207
           +++++ G       D A   LK ++
Sbjct: 517 YHSLLDGLARNGLEDLALELLKTSL 541



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 62/256 (24%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK   +D A       ++K    D+  Y+S + GLC  NR+ EA +  
Sbjct: 178 NVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCC 237

Query: 64  DKMVAQGITAELVTY--------------------------------------------- 78
            KMV +G  A+ V +                                             
Sbjct: 238 RKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNH 297

Query: 79  -------NPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCRVGRWEE 128
                  N LIH   + +     + L Q ++  K      N+E Y++++D LC+  + +E
Sbjct: 298 PPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDE 357

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A++ +++++  GL P VVTY+ L++GLCK G +  A  LL +M ++G FPDS +  +++ 
Sbjct: 358 AQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILN 417

Query: 189 GFLVKNETDRASSFLK 204
                 + D A S L+
Sbjct: 418 ALSKAGKVDYALSHLE 433



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    VF Y+  ++ L   N  + A E F +M  +G   +  TY+ ++    +     
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNIL 151
            A  LL  L     +LN+  YS+VIDG C+  R ++A +    +S   G VP VVT+N L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSL 150

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + GLC    + EA  L   M + GC P+  S++T++ G       D A
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++++LI+ +C   RL + V LF +M +         L TYN ++ +  + +    A  L+
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       ++  YS ++DGLC++G+ + A   L+++S++G+ P   T   ++N L K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A   L  MK +G  PD  ++NT++ G       D A +FL K
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 41/226 (18%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK+ ++D A        K+G+  D F  +S++N L    ++  A+   + M
Sbjct: 376 TYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETM 435

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+G T +LVTYN L+ D   K GR   A+  L  +   K   ++  Y+++I  LCR G+
Sbjct: 436 KARGSTPDLVTYNTLL-DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 126 WEEARKKLDQLSEKGLVPGVVTYN--------------------------------ILIN 153
              A     ++ ++G++P  V Y+                                ++++
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVD 554

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLCK G   +A +++ +M + G   D+ ++  V++G     + D+A
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKA 600



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 53  FNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
             ++   V LFD +  Q G    + TYN  +    +      A    Q ++R  Y  +  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDF 74

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS+V+ GLC+ G  ++A++ L QL E G+   V+TY+++I+G CK   + +A ++   M
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTM 134

Query: 172 KE-KGCFPDSTSFNTVIQGF 190
               GC PD  +FN++++G 
Sbjct: 135 SAGGGCVPDVVTFNSLLKGL 154



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   ID AI          C  DVF Y+ +I  LC   +   A  +F +M
Sbjct: 446 TYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEM 505

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  + V Y+ L+ D   + G    +AL + L+    + +  ++ +V+DGLC+ G+ 
Sbjct: 506 VKRGVLPDTVLYHSLL-DGLARNG-LEDLAL-ELLKTSLCKPDFVMHKMVVDGLCKAGKA 562

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           E+A + ++++++ G      TY  ++ GL K G + +A +L+    E
Sbjct: 563 EDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 90  GRFSAMA-LLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           G+ S +  L   L R K Y+ ++  Y+  +D L +    + A +K  Q+  +G  P   T
Sbjct: 16  GKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT 75

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y+I++ GLCK G + +A +LL Q++E G   +  +++ VI G    +  D A    K
Sbjct: 76  YSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFK 132


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 42/210 (20%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K +   Y + ING+CK+         I  AI KG   D+F Y++L++G C   
Sbjct: 495 EMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQL 554

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A+EL ++M +QG+T +++TYN L+                                
Sbjct: 555 KLDSAIELVNRMWSQGMTPDVITYNTLL-------------------------------- 582

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              +GLC+  + EE  +    ++EKG  P ++TYN +I  LC    + EA  LL +MK K
Sbjct: 583 ---NGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSK 639

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  PD  SF T+I GF    + D A    +
Sbjct: 640 GLTPDVVSFGTLITGFCKVGDLDGAYGLFR 669



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 19/193 (9%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I G+CK   +D A++       +G+  DV  Y+++I GLC  +R+ EA E  
Sbjct: 329 NLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECL 388

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQG------RFSAMALLQTLERDKYELNIEVYSLVI 117
            KMV  G      TYN +I D + K+G      R    A+ +  + D++      Y  ++
Sbjct: 389 HKMVNGGFEPNDFTYNSII-DGYCKKGMVVDANRILKDAVFKGFKPDEF-----TYCSLV 442

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +G C+ G  ++A         KGL P ++ YN LI GLC++G+I+ A +L+ +M EKGC 
Sbjct: 443 NGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCK 502

Query: 178 PDSTSFNTVIQGF 190
           PD  ++N +I G 
Sbjct: 503 PDIWTYNLIINGL 515



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 1/185 (0%)

Query: 24  KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           + RE+ D  ++  +C DV  ++ L++ LC    + E+  LFDK++ +G+   L T+N  I
Sbjct: 278 RARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFI 337

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
               ++     A+ LL  + R+    ++  Y+ VI GLCR  R  EA + L ++   G  
Sbjct: 338 QGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P   TYN +I+G CKKGM+++A+++L     KG  PD  ++ +++ GF    + D+A + 
Sbjct: 398 PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAV 457

Query: 203 LKKNM 207
            K  +
Sbjct: 458 FKDGL 462



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   Y   I+G CK        R +  A+ KG   D F Y SL+NG C      +A+
Sbjct: 396 FEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAM 455

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F   + +G+   ++ YN LI    ++     A+ L+  +     + +I  Y+L+I+GL
Sbjct: 456 AVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGL 515

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++G   +A   +     KG +P + TYN L++G C++  +  A +L+ +M  +G  PD 
Sbjct: 516 CKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDV 575

Query: 181 TSFNTVIQGF 190
            ++NT++ G 
Sbjct: 576 ITYNTLLNGL 585



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           + +++ + + + Y IRI   C+     +A++        G   +   Y +++ G   F  
Sbjct: 216 MKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGD 275

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A ELFD+M+   +  ++ T+N L+H   +K     +  L   + +     N+  +++
Sbjct: 276 NDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNI 335

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            I GLC+ G  + A + L  +S +GL P VVTYN +I GLC+K  ++EA++ L +M   G
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG 395

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             P+  ++N++I G+  K     A+  LK
Sbjct: 396 FEPNDFTYNSIIDGYCKKGMVVDANRILK 424



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 86/164 (52%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V+ Y++++N L  F    +A +++ +M  + + +++ TY   I         ++A+ LL+
Sbjct: 190 VYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLR 249

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +       N   Y  V+ G    G  + AR+  D++ E  L P V T+N L++ LCKKG
Sbjct: 250 NMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKG 309

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++E+++L  ++ ++G  P+  +FN  IQG   +   DRA   L
Sbjct: 310 FVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLL 353



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 10/209 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +TE+    N   Y   I  +C  ++++ A+        KG+  DV  + +LI G C    
Sbjct: 601 MTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGD 660

Query: 56  LKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           L  A  LF  M  Q  ++    TYN +I    E+     A+ L   ++++  + +   Y 
Sbjct: 661 LDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYR 720

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDG C+ G   +  K L +  EKG +P + T+  ++N LC +  + EA  ++  M +K
Sbjct: 721 VLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQK 780

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              PD+   NT+ +     + T  A  FL
Sbjct: 781 DIVPDTV--NTIFEADKKGHITYHAYEFL 807



 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 38/172 (22%)

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--EVYSLVIDGLCR 122
           K   QG    L TY  ++       G+F+ M  L +  R   +  +   VY   +    R
Sbjct: 109 KKTKQGFKHTLFTYKSMLQ-KLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGR 167

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-------- 174
            G+ +EA    +++      P V +YN ++N L + G   +A K+ ++MK+K        
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 175 ---------------------------GCFPDSTSFNTVIQGFLVKNETDRA 199
                                      GCF ++ ++ TV+ GF    + DRA
Sbjct: 228 YTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRA 279


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 97/167 (58%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+++I+G C  NR++ A ++ ++M A+G   ++VTYN +I     ++    A+ +L
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVL 195

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             L  D     +  Y+++I+     G   EA K L+++  +GL+P + TYN +I G+CK+
Sbjct: 196 DQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GM+  A +L+  +  KGC PD  S+N +++ FL + + D     + +
Sbjct: 256 GMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAE 302



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I+ +CK   +D AI         G   D+  Y++++  LC    
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+E+F+K+   G    + +YN +I   W    R  A+ ++  +     + +   Y+ 
Sbjct: 398 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  EEA   LD + + G  P V++YNI++ GLCK   I +A  +  +M EKG
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 517

Query: 176 CFPDSTSFNTVIQGF 190
           C P+ T++  +I+G 
Sbjct: 518 CRPNETTYILLIEGI 532



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            ++ E   + +   Y   I+G CK+  I++A +       +G   D+  Y+ +I  LC  
Sbjct: 126 MEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A+++ D+++       ++TY  LI     + G   AM LL+ +       ++  Y
Sbjct: 186 RKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 245

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G+C+ G  E A + +  L+ KG  P V++YNIL+     +G   E +KL+ +M  
Sbjct: 246 NAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 305

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +GC P+  +++ +I         D A S LK
Sbjct: 306 RGCEPNKVTYSILISSLCRFGRIDEAISVLK 336



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 10/183 (5%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----- 82
           ++  + +G+  D++ Y+++I G+C    ++ A EL   + ++G   ++++YN L+     
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLN 289

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
              W++  +  A    +  E +K       YS++I  LCR GR +EA   L  + EK L 
Sbjct: 290 QGKWDEGEKLVAEMFSRGCEPNKV-----TYSILISSLCRFGRIDEAISVLKVMIEKELT 344

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P   +Y+ LI+ LCK+G +  A  ++  M   GC PD  ++NT++         ++A   
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 203 LKK 205
             K
Sbjct: 405 FNK 407



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +C+   ID AI       +K +  D + Y  LI+ LC   RL  A+ + D M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++ G   ++V YN ++    +      A+ +   L       N+  Y+ +I  L   G  
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 433

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A   +  +  KG+ P  +TYN LI+ LC+ G++ EA  LL  M++ G  P   S+N V
Sbjct: 434 SRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 493

Query: 187 IQGFLVKNETDRA 199
           + G       D A
Sbjct: 494 LLGLCKVRRIDDA 506



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK--KGICLD-----VFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I I  +C  R++  A+K    + LD     V  Y+ LI        + EA+
Sbjct: 168 FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAM 227

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L ++M+A+G+  ++ TYN +I    ++     A  L+ +L     + ++  Y++++   
Sbjct: 228 KLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAF 287

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
              G+W+E  K + ++  +G  P  VTY+ILI+ LC+ G I EA  +L  M EK   PD+
Sbjct: 288 LNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT 347

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S++ +I     +   D A
Sbjct: 348 YSYDPLISALCKEGRLDLA 366



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   I GMCK          I S   KG   DV  Y+ L+       +  E  +L 
Sbjct: 241 DMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLV 300

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M ++G     VTY+ LI  +  + GR   A+++L+ +   +   +   Y  +I  LC+
Sbjct: 301 AEMFSRGCEPNKVTYSILI-SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 359

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR + A   +D +   G +P +V YN ++  LCK G   +A ++  +++  GC P+ +S
Sbjct: 360 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSS 419

Query: 183 FNTVIQGFLVKNETDRA 199
           +NT+I       +  RA
Sbjct: 420 YNTMISALWSCGDRSRA 436



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N  C   +  E++   + +V +G T +++    LI   +  +    A  +++ LE   
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E ++  Y+ VI G C+V R E A + L+++  +G +P +VTYNI+I  LC +  +  A 
Sbjct: 134 -EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+L Q+    C P   ++  +I+  +V+   + A   L++
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNR 55
           F++ EQ   K + H Y +  + +CK    + A    ++KG+ L    Y++LI+G      
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGN 614

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  L ++M+ +G T +  TY+ L+H   +++    A+ +L  +     +  I  Y++
Sbjct: 615 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 674

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID + R G+ + A++  ++++  G  P   TY + IN  CK+G + +A+ L+++M+ +G
Sbjct: 675 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 734

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N +I G       DRA S LK+
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 764



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R+N   KI+E+    K G   D + Y++LI GLC   + +EA EL +  V +G T  +VT
Sbjct: 338 RMNDALKIKELME--KNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVT 394

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           +  LI+     +    A+ +   +   K +L+++V+  +I+ L +  R +EA++ L+++S
Sbjct: 395 FTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEIS 454

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             GLVP V+TY  +I+G CK G +  A ++L  M+  GC P++ ++N+++ G +   +  
Sbjct: 455 ANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLH 514

Query: 198 RASSFLKK 205
           +A + L K
Sbjct: 515 KAMALLTK 522



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I   CK  ++ +A       ++ G+  + F  ++L+ G C    L++A  LF  M
Sbjct: 185 TYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 244

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G      +Y  LI    E +    A+ L   ++RD    N+  ++ +I GLC+ GR 
Sbjct: 245 PLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 304

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +AR   D + + G+VP V+TYN +I G  K G + +A K+   M++ GC PD  ++NT+
Sbjct: 305 GDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL 364

Query: 187 IQGFLVKNETDRASSFL 203
           I G L   +T+ A   L
Sbjct: 365 IYG-LCDQKTEEAEELL 380



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 14  VYGIRINGMC--KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y   I G+C  K  E    +++A+K+G    V  +++LING C   +  +A+ + +KM+
Sbjct: 360 TYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 419

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +     +L  +  LI+   +K     A  LL  +  +    N+  Y+ +IDG C+ G+ +
Sbjct: 420 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 479

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L  +   G  P   TYN L+ GL K   + +A  LL +M++ G  P+  ++ T++
Sbjct: 480 IALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLL 539

Query: 188 QGFLVKNETDRA 199
           QG   +++ D A
Sbjct: 540 QGQCDEHDFDNA 551



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  I +G   D + YS L++ LC   RL EA+ + D+M  +GI   +  Y  LI +   
Sbjct: 622 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 681

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A  +   +    ++ +   Y++ I+  C+ GR E+A   + ++  +G+ P VVT
Sbjct: 682 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 741

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           YNILI+G    G I  A   L +M    C P+  ++  +++  L  N
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +   + K +  V+G  IN + K   +  A +        G+  +V  Y+S+I+G C   +
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+E+   M   G      TYN L++   + +    AMALL  +++D    N+  Y+ 
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C    ++ A +  + + + GL P    Y +L + LCK G   EA   +V+   KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KG 594

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                  + T+I GF     TD A++ +++
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIER 624



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 3   LTEQRFKGNF-HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           L +   KGN  +V  +  +GM  + E+D         +K G+   V  YSSLI G C   
Sbjct: 780 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 839

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL+EA  L D M  +G++     Y  LI    + +    A++ +  +    ++  +E Y 
Sbjct: 840 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 899

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++ GLC  G +E+ +     L E G     V + IL +GL K G +    ++L  M+++
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C   S ++       LV N+    SS L
Sbjct: 960 YCCISSQTYA------LVTNKMHEVSSSL 982



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 23/225 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T    K +   Y + IN  CK   ++ A        ++G+  DV  Y+ LI+G     
Sbjct: 694 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD----------NWEKQGRFSAMAL---LQTL 101
            +  A     +MV         TY  L+            + +  G ++ + L    Q L
Sbjct: 754 YIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLL 813

Query: 102 ERD-KYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ER  K+ LN  +  YS +I G C+ GR EEA   LD +  KGL P    Y +LI   C  
Sbjct: 814 ERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDT 873

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               +A   +  M E G  P   S+  ++ G   + + ++  S  
Sbjct: 874 KFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 91  RFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           R SA A+ Q + R    +  L+ + Y+  +  L R    E   +   QL + GL+P  VT
Sbjct: 127 RVSADAI-QAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVT 185

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN +I   CK+G +  A +    + E G  P++ + N ++ G+    E  +A
Sbjct: 186 YNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 10/197 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +   + G+C+    D A       +++   L    ++ LI+ LC   R+  A+E+F++M 
Sbjct: 419 FNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMP 478

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G T ++VTY+ LI+   E+    SA+ L Q++     + +I  Y+ V+ GLCR  RWE
Sbjct: 479 KYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM---PCKPDIFGYNAVLKGLCRAARWE 535

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + +  ++ K   P  +T+NILIN LC+KG++  A ++  QM + G  PD  ++N +I
Sbjct: 536 DAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALI 595

Query: 188 QGFLVKNETDRASSFLK 204
            GF  +   D A   L 
Sbjct: 596 NGFSEQGRLDDARRLLS 612



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 12/199 (6%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   + G+C  R+ + A       ++     +   +++ I   C    L  AV+L D+
Sbjct: 213 YTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDR 272

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M   G T ++V Y+ L++  + +QGR   A+ LL  +     + N   Y+  + GLC   
Sbjct: 273 MPQYGCTPDVVIYSTLVN-GFSEQGRVDDAIELLNGM---LCKPNTICYNAALKGLCIAQ 328

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RWE+  + + ++  K  +P   T+++L + LC+ G++  A ++L QM + GC PD+  +N
Sbjct: 329 RWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYN 388

Query: 185 TVIQGFLVKNETDRASSFL 203
           T+I  F  +   D A   L
Sbjct: 389 TLIYSFSEQGRVDDALKLL 407



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+K     D   +++L+ G C   RL +A E           A +VTY  LI+  + + G
Sbjct: 137 ALKAAGAADPVSHNTLVAGYCRDGRLADA-ERLLAAAGLSGAANVVTYTTLIN-GYCRSG 194

Query: 91  RFS-AMALLQTLE--RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           R + A+AL+ ++    D Y      Y+ V+ GLC   +WE+A   + ++      P  VT
Sbjct: 195 RLADALALIASMPVAPDTY-----TYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVT 249

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +   I   C+ G++  A +LL +M + GC PD   ++T++ GF  +   D A   L
Sbjct: 250 FATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELL 305



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 23/214 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++       N   +  +I   C+   +D A++        G   DV +YS+L+NG     
Sbjct: 237 EMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQG 296

Query: 55  RLKEAVELFDKMVAQGITAELVTYNP-----LIHDNWEKQGRFSAMALLQTLERDKYELN 109
           R+ +A+EL + M+ +  T   + YN       I   WE  G+     L+  + R     N
Sbjct: 297 RVDDAIELLNGMLCKPNT---ICYNAALKGLCIAQRWEDVGQ-----LIVEMVRKDCLPN 348

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              +S++   LC+ G  + A + L+Q+ + G  P  V YN LI    ++G + +A KLL 
Sbjct: 349 EATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLN 408

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            M    C PD  SFN  ++G       D A   +
Sbjct: 409 SMP---CSPDVISFNAALKGLCRAERWDDAEELI 439



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 14  VYGIRINGMCKIREIDSAI---KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   ING+ +   ++SAI   +   C  D+F Y++++ GLC   R ++A EL   M  +
Sbjct: 488 TYSSLINGLSEQGLVESAIELFQSMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARK 547

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
                 +T+N LI+   +K     A+ + + + +     +I  Y+ +I+G    GR ++A
Sbjct: 548 DCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDA 607

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           R+ L  +S K   P  V+YN  + GLC+     EA++++ +M    C P+  +F
Sbjct: 608 RRLLSTMSCK---PDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           LI  LC   RL +A  + D + A G  A+ V++N L+   + + GR +    L       
Sbjct: 118 LIKKLCAQRRLADAERVLDALKAAG-AADPVSHNTLVA-GYCRDGRLADAERLLAAAGLS 175

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              N+  Y+ +I+G CR GR  +A   L  ++   + P   TYN ++ GLC      +A+
Sbjct: 176 GAANVVTYTTLINGYCRSGRLADA---LALIASMPVAPDTYTYNTVLMGLCGARQWEDAE 232

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L+ +M    C P+  +F T I+ F      DRA   L +
Sbjct: 233 ALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDR 272



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 20  NGM--CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG+  C +  ++   K G   D  +Y++LI       R+ +A++L + M     + ++++
Sbjct: 362 NGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPC---SPDVIS 418

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           +N  +      +    A  L+  + R+   L    ++++ID LC+ GR   A +  +Q+ 
Sbjct: 419 FNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMP 478

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + G  P +VTY+ LINGL ++G++  A +L   M    C PD   +N V++G 
Sbjct: 479 KYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMP---CKPDIFGYNAVLKGL 528



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           N   Y   ING C+   +  A+       +  D + Y++++ GLC   + ++A  L  +M
Sbjct: 179 NVVTYTTLINGYCRSGRLADALALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAEM 238

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V        VT+   I    +      A+ LL  + +     ++ +YS +++G    GR 
Sbjct: 239 VRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRV 298

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + L+ +  K   P  + YN  + GLC      +  +L+V+M  K C P+  +F+ +
Sbjct: 299 DDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSML 355

Query: 187 IQGFLVKNETDRASSFLKK 205
                     D A   L++
Sbjct: 356 TSCLCQNGLVDCAMEVLEQ 374


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNR 55
           F++ EQ   K + H Y +  + +CK    + A    ++KG+ L    Y++LI+G      
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGN 614

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  L ++M+ +G T +  TY+ L+H   +++    A+ +L  +     +  I  Y++
Sbjct: 615 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 674

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID + R G+ + A++  ++++  G  P   TY + IN  CK+G + +A+ L+++M+ +G
Sbjct: 675 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 734

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N +I G       DRA S LK+
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 764



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R+N   KI+E+    K G   D + Y++LI GLC   + +EA EL +  V +G T  +VT
Sbjct: 338 RMNDALKIKELME--KNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVT 394

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           +  LI+     +    A+ +   +   K +L+++V+  +I+ L +  R +EA++ L+++S
Sbjct: 395 FTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEIS 454

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             GLVP V+TY  +I+G CK G +  A ++L  M+  GC P++ ++N+++ G +   +  
Sbjct: 455 ANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLH 514

Query: 198 RASSFLKK 205
           +A + L K
Sbjct: 515 KAMALLTK 522



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I   CK  ++ +A       ++ G+  + F  ++L+ G C    L++A  LF  M
Sbjct: 185 TYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 244

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G      +Y  LI    + +    A+ L   ++RD    N+  ++ +I GLC+ GR 
Sbjct: 245 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 304

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +AR   D + + G+VP V+TYN +I G  K G + +A K+   M++ GC PD  ++NT+
Sbjct: 305 GDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL 364

Query: 187 IQGFLVKNETDRASSFL 203
           I G L   +T+ A   L
Sbjct: 365 IYG-LCDQKTEEAEELL 380



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 14  VYGIRINGMC--KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y   I G+C  K  E    +++A+K+G    V  +++LING C   +  +A+ + +KM+
Sbjct: 360 TYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 419

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +     +L  +  LI+   +K     A  LL  +  +    N+  Y+ +IDG C+ G+ +
Sbjct: 420 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 479

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L  +   G  P   TYN L+ GL K   + +A  LL +M++ G  P+  ++ T++
Sbjct: 480 IALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLL 539

Query: 188 QGFLVKNETDRA 199
           QG   +++ D A
Sbjct: 540 QGQCDEHDFDNA 551



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  I +G   D + YS L++ LC   RL EA+ + D+M  +GI   +  Y  LI +   
Sbjct: 622 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 681

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A  +   +    ++ +   Y++ I+  C+ GR E+A   + ++  +G+ P VVT
Sbjct: 682 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 741

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           YNILI+G    G I  A   L +M    C P+  ++  +++  L  N
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +   + K +  V+G  IN + K   +  A +        G+  +V  Y+S+I+G C   +
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+E+   M   G      TYN L++   + +    AMALL  +++D    N+  Y+ 
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C    ++ A +  + + + GL P    Y +L + LCK G   EA   +V+   KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KG 594

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                  + T+I GF     TD A++ +++
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIER 624



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 3   LTEQRFKGNF-HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           L +   KGN  +V  +  +GM  + E+D         +K G+   V  YSSLI G C   
Sbjct: 780 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 839

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL+EA  L D M  +G++     Y  LI    + +    A++ +  +    ++  +E Y 
Sbjct: 840 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 899

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++ GLC  G +E+ +     L E G     V + IL +GL K G +    ++L  M+++
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C   S ++       LV N+    SS L
Sbjct: 960 YCCISSQTYA------LVTNKMHEVSSSL 982



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 23/225 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T    K +   Y + IN  CK   ++ A        ++G+  DV  Y+ LI+G     
Sbjct: 694 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD----------NWEKQGRFSAMAL---LQTL 101
            +  A     +MV         TY  L+            + +  G ++ + L    Q L
Sbjct: 754 YIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLL 813

Query: 102 ERD-KYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ER  K+ LN  +  YS +I G C+ GR EEA   LD +  KGL P    Y +LI   C  
Sbjct: 814 ERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDT 873

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               +A   +  M E G  P   S+  ++ G   + + ++  S  
Sbjct: 874 KFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 91  RFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           R SA A+ Q + R    +  L+ + Y+  +  L R    E   +   QL + GL+P  VT
Sbjct: 127 RVSADAI-QAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVT 185

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN +I   CK+G +  A +    + E G  P++ + N ++ G+    E  +A
Sbjct: 186 YNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I    KI  +++A        K G+  D F Y+SL++G     R+ +A  ++D+M
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA GI    VT+N L+H  ++      A +L  + LE+D+    +  Y+++IDGL + GR
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA  +  ++ ++G++P   TY  LI  L K G I EA KL+  M + G  PD  +++ 
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I G +  +  D A    ++ M
Sbjct: 790 LITGLIDSSMVDTAWDVFQEMM 811



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 10/197 (5%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +NG+CK R+ID AI+        G    +  Y+++I+GL + +++ EA + F+ M+  
Sbjct: 25  IVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDN 84

Query: 70  GITAELVTYNPLIHDNWEK-QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G   +++ +  LIH   +  Q +   M L Q L+R  +  ++ +Y+ VI G C+ G  + 
Sbjct: 85  GCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR--FRPDVFLYTSVIHGYCKAGDLDT 142

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             K L+++   G +P    Y +LI+ LCK G + EA +L  +M++ GC  D  +F T+I+
Sbjct: 143 GFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIE 202

Query: 189 GFLVKNETDRASSFLKK 205
                 + D A    ++
Sbjct: 203 ALSNHGKLDEACELYRE 219



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           +RF+ +  +Y   I+G CK  ++D+  K        G   D   Y  LI+ LC   R+ E
Sbjct: 118 KRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDE 177

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A ELF++M   G   + VT+  LI +     G+   A  L + +    YE  +EV   +I
Sbjct: 178 AYELFERMRKSGCLGDYVTFMTLI-EALSNHGKLDEACELYREMIERGYEPYLEVQDSLI 236

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC+ G+ +EA +    +  K +    V YN L++G CK G + +  KLL+QM E   F
Sbjct: 237 FALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           PD  ++N ++ GF   N  D A    K
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFK 323



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 36/226 (15%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G CK+  +D  +K  + +       D+  Y+ L+ G    NRL +A+ELF  +
Sbjct: 266 AYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLL 325

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-----------------------------L 97
            + G      TY  +I   ++ Q    A A                             L
Sbjct: 326 SSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACEL 385

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + L+      N+  Y+ VIDGL + GR E+  K  + +S    VP   TY ++I+GLCK
Sbjct: 386 FEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCK 445

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             M+ +A K+  QM +KGC PD+ ++ T+I GF   ++ D A   L
Sbjct: 446 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL 491



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK + +  A       ++KG   D   Y++LI+G    +++ EA +L D M
Sbjct: 435 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM 494

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G     VTY  ++H   +      A  ++  +     E  + +++ ++      GR 
Sbjct: 495 LTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRA 554

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA + L +++ +G  P V+ Y  LI+ L   G + EA  +   M EKGC PD+ ++ T+
Sbjct: 555 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 614

Query: 187 IQGF 190
           IQ F
Sbjct: 615 IQNF 618



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 46/238 (19%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIKKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           K N   Y   I G+   + ++ A  K      LDV  Y+++I GL    R+ EA ELF+K
Sbjct: 331 KPNAATYTTIIQGLYDAQRMEEA--KAFFDEALDVISYTTVIKGLADSKRIDEACELFEK 388

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR----------FSAMALLQTLERDKYELNIE---- 111
           +   G +  +V Y  +I D   K GR           S  + + T  R  Y + I+    
Sbjct: 389 LKTAGCSPNVVAYTAVI-DGLLKAGRIEDGLKNFEDMSGSSCVPT--RTTYTVVIDGLCK 445

Query: 112 ------------------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                                    Y+ +IDG  +  + +EARK LD +  KG  P  VT
Sbjct: 446 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 505

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y  +++G CK  MI EA +++ QM+E+GC P    F +++  +L K   + A   L +
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTE 563



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK------GICLDV-FVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+ K   I+  +K         C+     Y+ +I+GLC    L +A ++F
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 456

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++MV +G   + +TY  LI D + K  +   A  LL  +     E     Y  ++ G C+
Sbjct: 457 EQMVQKGCVPDTITYTTLI-DGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 515

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +    EA++ + Q+ E+G  PG+  +  L++    KG   EA ++L +M  +GC PD   
Sbjct: 516 LDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVIL 575

Query: 183 FNTVI 187
           + ++I
Sbjct: 576 YTSLI 580



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%)

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA   L ++   GL+P VV  NI++NGLCK   I +A +L ++M   GC P   S+NT
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 186 VIQGFLVKNETDRASSFL 203
           VI G    ++ D A  F 
Sbjct: 61  VISGLASIDKMDEAYKFF 78



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 36/171 (21%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  DV   + ++NGLC   ++ +A+ELF +M + G    +V+YN               
Sbjct: 15  GLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYN--------------- 59

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                                VI GL  + + +EA K  + + + G  P V+ +  LI+G
Sbjct: 60  --------------------TVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHG 99

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            CK G   +   +L+    K   PD   + +VI G+    + D     L++
Sbjct: 100 FCKAGQ-PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEE 149



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           K N   + + ++G+ K  + D A         K  +   +  Y+ LI+GL    R+ EA 
Sbjct: 675 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAF 734

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
             F +M+ +GI  E  TY  LI+ +  K GR   A  L++ + +     +++ YS +I G
Sbjct: 735 SQFQEMIDRGIIPECHTYTSLIY-SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           L      + A     ++ ++G  P  VTY +L  G    G  ++
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 837


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +     N   YG  I  +CK   +D A       I +G+  ++ VY+SLI+ LC F++
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDK 456

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI    + +N +IH +  K+GR   +  L   + R   + N+  YS
Sbjct: 457 WDKAEELILEMLDRGICLNTIFFNSIIHSHC-KEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING C+   + +A  L  +M   
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++N ++QG      T  A
Sbjct: 576 GVSPNIITYNIILQGLFHTRRTAAA 600



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  + D A       + + I  DV  YSS+I  LC    + +A+E+   MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+    +TYN ++H     +    A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   FN +I
Sbjct: 319 EARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI 378

Query: 188 QGFLVKNETDRA 199
             +  + + D A
Sbjct: 379 CAYAKQEKVDEA 390



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 42/238 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G C   ++D A K        G+  D   Y++LING C  +R+ +A+ 
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +MV+ G++  ++TYN ++   +  +   +A  L   + +   +L +  Y++++ GLC
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLC 627

Query: 122 -----------------------------------RVGRWEEARKKLDQLSEKGLVPGVV 146
                                              +VGR +EA+      S  GLVP   
Sbjct: 628 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYW 687

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           TY ++   +  +G++ E D+L   M++ GC  DS   N +++  L + E  RA ++L 
Sbjct: 688 TYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + HV+ I I    K  ++D A+       + G+  +V  Y ++I  LC    + +A+  F
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T  ++ Y  LIH     D W+K        +L+ L+R    LN   ++ +I 
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL----ILEMLDRG-ICLNTIFFNSIIH 484

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ GR  E+ K  D +   G+ P V+TY+ LI+G C  G + EA KLL  M   G  P
Sbjct: 485 SHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKP 544

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++NT+I G+   +  D A +  K+
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKE 571



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  Y+++ING        +A   + +M+ + I+ ++VTY+ +I    + Q    A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M +L T+ ++    N   Y+ ++ G C   + +EA   L ++   G+ P VVTYN L++ 
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           LCK G   EA K+   M ++G  PD  ++ T++QG+  K
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  ++ TY  L+     K       ALL  + R+    +  V++++I    + 
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +EA     ++ + GL P VVTY  +I  LCK G + +A     QM ++G  P+   +
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 184 NTVIQGFLVKNETDRASSFL 203
            ++I    + ++ D+A   +
Sbjct: 445 TSLIHSLCIFDKWDKAEELI 464



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FD 64
           H YGI I   C+   +D       + +KKG  ++   ++ L+ GLC   R  +A+++   
Sbjct: 88  HTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLC 121
           +M       ++ +   L+    ++     A+ LL  +  D+      ++  Y+ VI+G  
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A     ++ ++ + P VVTY+ +I  LCK   + +A ++L  M + G  P+  
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N+++ G+    +   A  FLKK
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKK 291



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  +V  YS+LI+G C   ++ EA +L   M + G+  + VTYN LI+     
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+AL + +       NI  Y++++ GL    R   A++    +++ G    + TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 620 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 670



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 35/212 (16%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS  K+G+  D+  Y +L+ G  T   L E   L D MV  GI  +   +N LI    ++
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    AM +   + +     N+  Y  VI  LC+ G  ++A    +Q+ ++GL P ++ Y
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 149 NILINGL-----------------------------------CKKGMIMEADKLLVQMKE 173
             LI+ L                                   CK+G ++E++KL   M  
Sbjct: 445 TSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR 504

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  +++T+I G+ +  + D A+  L  
Sbjct: 505 IGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +     N   YG  I  +CK   +D A       I +G+  ++ VY+SLI+ LC F++
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDK 456

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI    + +N +IH +  K+GR   +  L   + R   + N+  YS
Sbjct: 457 WDKAEELILEMLDRGICLNTIFFNSIIHSHC-KEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING C+   + +A  L  +M   
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++N ++QG      T  A
Sbjct: 576 GVSPNIITYNIILQGLFHTRRTAAA 600



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  + D A       + + I  DV  YSS+I  LC    + +A+E+   MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+    +TYN ++H     +    A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   FN +I
Sbjct: 319 EARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI 378

Query: 188 QGFLVKNETDRA 199
             +  + + D A
Sbjct: 379 CAYAKQEKVDEA 390



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + HV+ I I    K  ++D A+       + G+  +V  Y ++I  LC    + +A+  F
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T  ++ Y  LIH     D W+K        +L+ L+R    LN   ++ +I 
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL----ILEMLDRG-ICLNTIFFNSIIH 484

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ GR  E+ K  D +   G+ P V+TY+ LI+G C  G + EA KLL  M   G  P
Sbjct: 485 SHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKP 544

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++NT+I G+   +  D A +  K+
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKE 571



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 42/238 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G C   ++D A K        G+  D   Y++LING C  +R+ +A+ 
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +MV+ G++  ++TYN ++   +  +   +A  L   + +   +L +  Y++++ GLC
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLC 627

Query: 122 R-----------------------------------VGRWEEARKKLDQLSEKGLVPGVV 146
           +                                   VGR +EA+     LS  GLVP V 
Sbjct: 628 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 687

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           TY+++   L ++G++ E D L + M+E GC  +S   N++++  L + +  RA ++L 
Sbjct: 688 TYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLS 745



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  Y+++ING        +A   + +M+ + I+ ++VTY+ +I    + Q    A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M +L T+ ++    N   Y+ ++ G C   + +EA   L ++   G+ P VVTYN L++ 
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           LCK G   EA K+   M ++G  PD  ++ T++QG+  K
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  ++ TY  L+     K       ALL  + R+    +  V++++I    + 
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +EA     ++ + GL P VVTY  +I  LCK G + +A     QM ++G  P+   +
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 184 NTVIQGFLVKNETDRASSFL 203
            ++I    + ++ D+A   +
Sbjct: 445 TSLIHSLCIFDKWDKAEELI 464



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FD 64
           H YGI I   C+   +D       + +KKG  ++   ++ L+ GLC   R  +A+++   
Sbjct: 88  HTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLC 121
           +M       ++ +   L+    ++     A+ LL  +  D+      ++  Y+ VI+G  
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A     ++ ++ + P VVTY+ +I  LCK   + +A ++L  M + G  P+  
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N+++ G+    +   A  FLKK
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKK 291



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  +V  YS+LI+G C   ++ EA +L   M + G+  + VTYN LI+     
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+AL + +       NI  Y++++ GL    R   A++    +++ G    + TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 620 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 670



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 35/212 (16%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS  K+G+  D+  Y +L+ G  T   L E   L D MV  GI  +   +N LI    ++
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    AM +   + +     N+  Y  VI  LC+ G  ++A    +Q+ ++GL P ++ Y
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 149 NILINGL-----------------------------------CKKGMIMEADKLLVQMKE 173
             LI+ L                                   CK+G ++E++KL   M  
Sbjct: 445 TSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR 504

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  +++T+I G+ +  + D A+  L  
Sbjct: 505 IGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I + G+   R   +A        K G  L++  Y+ +++GLC  N   EA+ +F
Sbjct: 580 NIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +    +  E  T+N +I    +      A  L   L  +    ++  YSL+ + L   
Sbjct: 640 QNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 699

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           G  EE       + E G        N ++  L ++G I  A   L  + EK
Sbjct: 700 GLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEK 750


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + HV+ I I    K  ++D  +       ++G+  +   Y ++I+GLC   RL +A+  F
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNF 240

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T  +V Y  LIH     D WEK        L Q +       NI  ++ ++D
Sbjct: 241 EQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINP-----NIVFFNTILD 295

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  E++K  D L   G+ P V+TY+ LI+G C  G +  A KLL  M   G  P
Sbjct: 296 SLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKP 355

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           DS +++T+I G+   N  + A +  K+
Sbjct: 356 DSVTYSTLINGYCKINRMEDALALFKE 382



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   Y   I+G+CK+  +D A       I KG+  +V VY+SLI+ LCT+++
Sbjct: 208 MRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDK 267

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            ++A EL  +++ QGI   +V +N ++ D+  K+GR   +  L   L       ++  YS
Sbjct: 268 WEKAEELIFEILDQGINPNIVFFNTIL-DSLCKEGRVIESKKLFDLLGHIGVNPDVITYS 326

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ + A K L  +   GL P  VTY+ LING CK   + +A  L  +M+  
Sbjct: 327 TLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESN 386

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N ++ G      T  A     +
Sbjct: 387 GVNPDIITYNIILHGLFRTRRTAAAKELYAR 417



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   + + AI         GI  DV  Y+SL++ LC   +  EA ++F
Sbjct: 76  NCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIF 135

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV +G+  ++ TY  L+H    K        LL  + ++  +L+  V++++I    + 
Sbjct: 136 DSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQ 195

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +E      ++ ++GL P  V Y  +I+GLCK G + +A     QM +KG  P+   +
Sbjct: 196 EKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVY 255

Query: 184 NTVIQGFLVKNETDRASSFL 203
            ++I      ++ ++A   +
Sbjct: 256 TSLIHALCTYDKWEKAEELI 275



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 4/155 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++I+GL     + +A   + +M+ + ++ + VTYN +I    + Q    AM +L
Sbjct: 10  DVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL 69

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       N   Y+ ++ G C  G+ E+A     ++   G+ P VVTYN L++ LCK 
Sbjct: 70  TVMVMP----NCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKN 125

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G   EA K+   M ++G  PD T++ T++ G+  K
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASK 160



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKI-REIDSAIKK--------GICLDVFVYSSLINGLC 51
           F++ +Q    N   +   ++ +CK  R I+S  KK        G+  DV  YS+LI+G C
Sbjct: 276 FEILDQGINPNIVFFNTILDSLCKEGRVIES--KKLFDLLGHIGVNPDVITYSTLIDGYC 333

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              ++  A++L   MV+ G+  + VTY+ LI+   +      A+AL + +E +    +I 
Sbjct: 334 LAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDII 393

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
            Y++++ GL R  R   A++   +++E G    + TYNI++    K   +M
Sbjct: 394 TYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLM 444



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDGL + G  ++A     ++ ++ + P  VTYN +I  L K   +  A ++L  M 
Sbjct: 14  YNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVMV 73

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              CF    ++N+++ G+    ++++A    +K
Sbjct: 74  MPNCF----TYNSIMHGYCSSGQSEKAIGIFRK 102



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VV+YN +I+GL K+G + +A     +M ++   PD+ ++N++I         DRA   
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 203 L 203
           L
Sbjct: 69  L 69


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 16/207 (7%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+  CK   ++ A       I+ G   DV  Y+++++GLC  +R++EA+ LF++M
Sbjct: 395 TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM 454

Query: 67  VAQGITAELVTYNPLIH--------DNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
              G T    ++N +I         D   ++G+   A  LL+ +  D +  ++  YS +I
Sbjct: 455 ERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 514

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC + R ++AR  L+ + ++   P VVT N LI+GLCK G I EA ++L  M   G  
Sbjct: 515 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 574

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           PD  ++NT++ G     +T+RA   L 
Sbjct: 575 PDVVTYNTLVHGHCRAGQTERARELLS 601



 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 47/204 (23%)

Query: 6   QRFKGNFHV-----YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +R   + HV     Y   I+G+C I  +D A       +K+     V   ++LI+GLC  
Sbjct: 496 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 555

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+KEA E+ D MV+ G + ++VTYN L+H                              
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVH------------------------------ 585

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                G CR G+ E AR+ L  +  +GL P VVTY  L++GLCK   + EA  +  QMK 
Sbjct: 586 -----GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 640

Query: 174 KGCFPDSTSFNTVIQGFLVKNETD 197
            GC P+  ++  +I GF    + D
Sbjct: 641 SGCAPNLFTYTALILGFCSAGQVD 664



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 16/218 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    +   YGI I+G+ K  +++ A       +  G+      Y+SLI+GLC  N 
Sbjct: 314 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 373

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A ELF  M  +G     VTYN +I  + ++     A  L++ +  D +  ++  Y+ 
Sbjct: 374 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL---------CKKGMIMEADK 166
           V+DGLC+  R EEA    +++   G  P   ++N +I GL         C++G + EA +
Sbjct: 434 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFR 493

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LL +M + G  PD  +++T+I G       D A   L+
Sbjct: 494 LLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 531



 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 24  KIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDK------MVAQGITAELV 76
           K RE+  A+    C  D   Y ++++GLC   R++EAV LF          +      L 
Sbjct: 230 KARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLR 289

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            YN +I    +      A+ + + +       +   Y ++IDGL + G+  +AR    +L
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
              G+ P  V Y  LI+GLC      +A +L   M  +GC P   ++N +I     +   
Sbjct: 350 LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 197 DRASSFLKK 205
           + A   +KK
Sbjct: 410 EEACDLIKK 418



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F L E+       VY + I+ + K +E ++        + +G   D F +++++ GLC  
Sbjct: 33  FSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKA 92

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA  + D+M ++ I     T + L H+   +     A  LL+ +       N   Y
Sbjct: 93  GKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAY 148

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEK--------------GLV----------------- 142
           ++V+  LC+  R ++A +    +SEK              GL+                 
Sbjct: 149 NIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR 208

Query: 143 -PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            P +VT N+L+ G C +G + +A +LL  M ++ C PD  S+ TV+ G       + A
Sbjct: 209 EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEA 266



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F L E     N   Y I +  +CK   +D A+       +K I L      S++ GL   
Sbjct: 134 FQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDS 193

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+ EA++++ +   +     LVT N L+     +     A  LL+ +  ++   +   Y
Sbjct: 194 GRIDEALQVYRENRREPC---LVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSY 250

Query: 114 SLVIDGLCRVGRWEEA------RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
             V+DGLC+ GR EEA      R+     S     P +  YNI+I GLC+   I EA ++
Sbjct: 251 CTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQM 310

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +M E+   PDS S+  +I G     + + A +  +K
Sbjct: 311 FEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQK 348



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +    N   Y   ++G+CK   +  A          G   ++F Y++LI G C+  
Sbjct: 602 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 661

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--- 111
           ++   ++LF +MV  GI+ + V Y  L  +   K GR SA AL + L   +  L  E   
Sbjct: 662 QVDGGLKLFGEMVCAGISPDHVVYGTLAAELC-KSGR-SARAL-EILREGRESLRSEAWG 718

Query: 112 --VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
             VY   +DGL   G+ E A   +  +   G +P       L+ GLCK G   EA  +L
Sbjct: 719 DEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVL 777



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++GI     +++S+I G C   R  EAV++F  M  +  +     YN LI    ++Q   
Sbjct: 3   QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLM-EECHSPYPDVYNVLIDSLSKRQETE 61

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +   ++Q +       +   ++ ++ GLC+ G+ +EA   +D++  + + P   T + L 
Sbjct: 62  AVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLA 121

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + LC +G +  A +LL  M       +S+++N V+         D A
Sbjct: 122 HELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVDDA 164



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  QGI    + +  +I   W   GR F A+ +   +E + +    +VY+++ID L +  
Sbjct: 1   MFQQGIFPAPLLFTSVIQ-GWCNVGRTFEAVKIFSLME-ECHSPYPDVYNVLIDSLSKRQ 58

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E  +K +  + ++G  P   T+  ++ GLCK G + EA+ ++ +M+ +   P   + +
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSS 118

Query: 185 TVIQGFLVKNETDRASSFLK 204
            +     ++   +RA   L+
Sbjct: 119 FLAHELCLRGSMERAFQLLE 138


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   Y   I+ +CK+  +D A       I +G+  ++ V++SL+ GLCT ++
Sbjct: 405 MRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDK 464

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            ++A ELF +MV QGI   +V +N ++  N   +GR   A  L+  +ER     +I  Y+
Sbjct: 465 WEKAGELFFEMVNQGIHPNVVFFNTIMC-NLCTEGRVMKAQRLIDLMERVGTRPDIISYN 523

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C VG+ +EA K LD +   GL P   TYN L++G C+ G I +A  +  +M   
Sbjct: 524 ALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSN 583

Query: 175 GCFPDSTSFNTVIQGFL 191
           G  P   ++NT++ G  
Sbjct: 584 GITPVVVTYNTILHGLF 600



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ++G C+   ID A       +  GI   V  Y+++++GL    R  EA 
Sbjct: 550 LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAK 609

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+  M+  G    + TYN +++   +      A+ + Q+L     +++I  ++++I  L
Sbjct: 610 ELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGAL 669

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR E+A      +S  GLVP V TY ++   L ++G + E D +  +M++ GC P+S
Sbjct: 670 LKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNS 729

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
              N +++  L++ +  RA ++L K
Sbjct: 730 LMLNFLVRRLLLRGDISRAGAYLSK 754



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+++ING  T  ++ +A  LF  M  QGI   +VTY  +I    + Q    A  + Q + 
Sbjct: 207 YNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI 266

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 NI  Y+ +I G   +G+W+E  + L ++S  GL P   TY +L++ LCKKG   
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCT 326

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           EA KL   M  KG  PD + +  ++ G+  K       SFL
Sbjct: 327 EARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFL 367



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 44/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLING----- 49
           +++    + +   YG+ ++ +CK       R++ DS I+KGI  DV +Y  +++G     
Sbjct: 299 EMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKG 358

Query: 50  ---------------------------LCTFNR---LKEAVELFDKMVAQGITAELVTYN 79
                                       C F +   + EA+++F+KM  QG++  +V Y 
Sbjct: 359 ALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYA 418

Query: 80  PLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D   K GR     L    +  +    NI V++ ++ GLC + +WE+A +   ++  
Sbjct: 419 TLI-DALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVN 477

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G+ P VV +N ++  LC +G +M+A +L+  M+  G  PD  S+N +I+G  +  +TD 
Sbjct: 478 QGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDE 537

Query: 199 ASSFL 203
           AS  L
Sbjct: 538 ASKLL 542



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 9/207 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+T+Q    N   Y I I+G+CK + +D A       I KG+  ++  Y+ LI+G  + 
Sbjct: 228 LDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSI 287

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            + KE V +  +M A G+  +  TY  L+ D   K+G+ + A  L  ++ R   + ++ +
Sbjct: 288 GQWKEVVRMLKEMSAHGLEPDCFTYG-LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSI 346

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y +++ G    G   E    LD +   G+ P    +NI+     KK MI EA  +  +M+
Sbjct: 347 YGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMR 406

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++G  P+  ++ T+I         D A
Sbjct: 407 QQGLSPNVVNYATLIDALCKLGRVDDA 433



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWE 87
           ++G+  +V  Y++LI+ LC   R+ +A   F++M+ +G+   +V +  L++     D WE
Sbjct: 407 QQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWE 466

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K G      L   +       N+  ++ ++  LC  GR  +A++ +D +   G  P +++
Sbjct: 467 KAGE-----LFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIIS 521

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN LI G C  G   EA KLL  M   G  P+  ++NT++ G+      D A S  ++
Sbjct: 522 YNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQE 579



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING     ++D A         +GI  +V  Y+ +I+GLC    +  A  +F
Sbjct: 203 NLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVF 262

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +G+   +VTY  LIH           + +L+ +     E +   Y L++D LC+ 
Sbjct: 263 QQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKK 322

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EARK  D +  KG+ P V  Y I+++G   KG + E    L  M   G  P+   F
Sbjct: 323 GKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIF 382

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V   F  K     A     K
Sbjct: 383 NIVFCAFAKKAMIGEAMDIFNK 404



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 4/150 (2%)

Query: 46  LINGLCTFNRLKEAVE-LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
           L+ GLC   R+ EA+  L  +M   G T  +V+YN L+    ++     A+ LL  +   
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 105 KY---ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +      N+  Y+ VI+G    G+ ++A      ++++G+ P VVTY I+I+GLCK  ++
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             A+ +  QM +KG  P+  ++  +I G+L
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYL 285


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+ MC+  ++D A         +G   +   Y++++ GLC+  R  +A EL 
Sbjct: 15  NVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELL 74

Query: 64  DKMVAQ-----------------------------------GITAELVTYNPLIHDNWEK 88
           D+MV +                                   G TA +VTYN +I    E+
Sbjct: 75  DEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQ 134

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
               SA+ LL  ++    + +I  Y+ ++ GLC   +WE+A + + ++S+   +P  VT+
Sbjct: 135 GHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTF 194

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N +I+ LC+KG+I++A ++  QM EKGC P+ST+++T+I G     + ++A   L +
Sbjct: 195 NTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNE 251



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 93/178 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID    +G   +V  Y+ +I+ +C    + +A EL + + ++G     V YN ++     
Sbjct: 4   IDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCS 63

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A  LL  + R+    N    +++++ L R G  ++  + L+++S+ G    VVT
Sbjct: 64  IERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVT 123

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN +I+G+C++G +  A +LL  M+  GC PD  ++NT+++G    ++ + A   + K
Sbjct: 124 YNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIK 181



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +EL D M A+G    +VTYN +I     +     A  LL +L     + N   Y+ V+ G
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC + RW +A + LD++  +   P   T N+++N L +KG++ +  + L +M + GC  +
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
             ++N VI G   +   D A   L 
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLS 145



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 8/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           +++     N   Y   I+GMC+   +DSA++        G   D+  Y++L+ GLC+ ++
Sbjct: 112 MSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQ 171

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A EL  KM       + VT+N +I    +K     A  + + +       N   YS 
Sbjct: 172 WEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYST 231

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GL + G+ E+A + L++++ KG     + Y +L   L K+  I E  +++ ++++ G
Sbjct: 232 IIGGLAKAGKMEQALELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSG 290

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             P +  FNTV+       +TD A   L
Sbjct: 291 ISPQTVLFNTVLLVLCRNGKTDYAIDVL 318



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M L+  +  +  E N+  Y+++ID +CR G  ++AR+ L+ L  +G  P  V YN ++ G
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC     ++A++LL +M  + C P+  + N ++     K    + + +L+K
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEK 111



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG   +   YS++I GL    ++++A+EL ++M ++G   + +    L+ ++  K+ + 
Sbjct: 219 EKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQ--LLTESLNKEDKI 276

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + ++  L+         +++ V+  LCR G+ + A   L  +   G +P  +TY IL
Sbjct: 277 EEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIIL 336

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           I GL  +G + EA +L+ ++    C  D      V+   L+KNE 
Sbjct: 337 IEGLSYEGYLQEARELVSRL----CSRD------VLSNSLIKNEA 371


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 7/179 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK R +D   +         I  DVF YS LI+GLC   RL  A +LFD+M  +G+
Sbjct: 265 INGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGL 324

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +T+  LI   +  +   SAM     +     + ++ +Y+ +++GLC+VG   +ARK
Sbjct: 325 RPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARK 384

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +D++   G+ P  +TY  LI+G CK+G +  A ++   M E+G   D+ +F  +I GF
Sbjct: 385 LVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF 443



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 10/213 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCT 52
           FD  +QR  + N   +   I+G  + R +DSA+         G+  D+ +Y++L+NGLC 
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
              + +A +L D+M   G+  + +TY  LI D + K+G   SAM + + +  +   L+  
Sbjct: 376 VGDVNKARKLVDEMKMVGMKPDKITYTTLI-DGYCKEGDLESAMEIRKGMNEEGVVLDNV 434

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ +I G CR GR  +A + L ++ E G+ P   TY ++I+G CKKG +    KLL +M
Sbjct: 435 AFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEM 494

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +  G  P   ++N ++ G   + +   A+  L+
Sbjct: 495 QINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E  F      Y I IN  CK   I  A        K+G+      +++LINGLC   
Sbjct: 213 EILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSR 272

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L E   L   M    I  ++ TY+ LIH    K+GR   A  L   +++     N   +
Sbjct: 273 NLDEGFRLKKTMEENRIYPDVFTYSVLIH-GLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG  R  R + A     Q+   G+ P +V YN L+NGLCK G + +A KL+ +MK 
Sbjct: 332 TALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKM 391

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PD  ++ T+I G+  + + + A
Sbjct: 392 VGMKPDKITYTTLIDGYCKEGDLESA 417



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  +++SA++       +G+ LD   +++LI+G C   R+++A     +M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V  G+  +  TY  +I D + K+G       LL+ ++ + ++  +  Y+++++GLC+ G+
Sbjct: 460 VEAGMKPDDATYTMVI-DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+ +   G+ P  +TYNIL+ G CK G   +A+ LL    EKG   D   + +
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTS 575

Query: 186 VIQGF 190
           ++  +
Sbjct: 576 LVSEY 580


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VYG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F +M
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI     TY+ ++   ++ +    A+ L + L     +++I   + +I G+ +  R 
Sbjct: 631 TESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRV 690

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA+     +S  GLVP VVTY+I+I  L K+G++ EA+ +   M+  GC PDS   N V
Sbjct: 691 EEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHV 750

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L KNE  RA ++L K
Sbjct: 751 VRELLKKNEIVRAGAYLSK 769



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 84/155 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++I+G      + +A +LF +MV +GI  + VTY+ ++H   + +    A A L
Sbjct: 218 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +       N   Y+ +I G    G+W+EA +   ++  + ++P VVT+N+L+  LCK 
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKY 337

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+N ++ G+  K
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E+ S I   G+ LD+ ++SS+IN LC   R
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G+    V Y+ L+ D +   G+   A+ +   +     E N  VY 
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ +KG+ P  + YNI+I+GL + G  + A     +M E 
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   +  +++ V++G L KN     + FL K +
Sbjct: 634 GIAMNKCTYSIVLRG-LFKNRCFDEAIFLFKEL 665



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  Q    +   + + +  +CK  +I       D+   KG   DVF Y+ ++NG  T  
Sbjct: 314 EMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 373

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L +  +LFD M+  GI   + T+N LI           AM +   +     + N+  Y+
Sbjct: 374 CLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYT 433

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI  LCR+G+ ++A +K +Q+ ++G+ P    Y+ LI G C  G +++A +L+ ++   
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 175 GCFPDSTSFNTVI 187
           G   D   F+++I
Sbjct: 494 GMHLDIVLFSSII 506



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G  K  +++ A       +++GI  D   YSS+++ LC    + +A     +M
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+     TYN LI+  +   G++  A+ + + + R     ++  +++++  LC+ G+
Sbjct: 281 VNKGVLPNNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGK 339

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EAR   D ++ KG  P V +YNI++NG   KG +++   L   M   G  P   +FN 
Sbjct: 340 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV 399

Query: 186 VIQGFLVKNETDRA 199
           +I+ +      D+A
Sbjct: 400 LIKAYANCGMLDKA 413



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 86/171 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +V  Y+++I  LC   ++ +A+E F++M+ QG+  +   Y+ LI           A
Sbjct: 424 GVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 483

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+  +  +   L+I ++S +I+ LC++GR  +A+   D     GL P  V Y++L++G
Sbjct: 484 KELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C  G + +A ++   M   G  P+   + T++ G+      D   S  ++
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      ++ I  DV  ++ L+  LC + ++KEA ++FD M  +G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +YN +++    K        L   +  D     I  ++++I      G  ++A  
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMI 415

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P V+TY  +I  LC+ G + +A +   QM ++G  PD  +++ +IQGF 
Sbjct: 416 IFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 476 THGSLLKAKELISEIM 491



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+  +++  N L+    E +    A+ +L  L 
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDIL--LH 171

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV YN +I+G  
Sbjct: 172 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFF 230

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++++V+         D+A +FL++
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 114/204 (55%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + + HV+   I+  CK+  +  A        ++G+  +   Y +LI+G C   +
Sbjct: 311 MLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQ 370

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A  L ++M +QG+   LV +N LI+   +K     A+ +   +E+  +E +I  Y+ 
Sbjct: 371 LDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNT 430

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +  GLC++ R EEA++ L  + EKG+ P  V++ I+I+  CK+G ++EA+++   MK+KG
Sbjct: 431 IAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKG 490

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  ++NT+I G+  K +   A
Sbjct: 491 EKPNVVTYNTLIDGYSKKGKLKEA 514



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L E+    N H YG  I+G C   ++D+A         +G+ +++ ++++LING C   
Sbjct: 345 ELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKG 404

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ + D M  +G   ++ TYN +     +      A   L T+     + N   ++
Sbjct: 405 MIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFT 464

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID  C+ G   EA +    + +KG  P VVTYN LI+G  KKG + EA +L  +M+  
Sbjct: 465 IMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESI 524

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G   D  ++ T++ G  V  + + A + L
Sbjct: 525 GMTSDIYTYTTLVHGECVFGKVEEALTLL 553



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  Q    N  ++   ING CK   ID A+       KKG   D+F Y+++  GLC  N
Sbjct: 380 EMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLN 439

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R +EA      MV +G+    V++  +I  + ++     A  + Q +++   + N+  Y+
Sbjct: 440 RHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYN 499

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG  + G+ +EA +  D++   G+   + TY  L++G C  G + EA  LL ++  K
Sbjct: 500 TLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRK 559

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G      ++  +I G   +  ++ A
Sbjct: 560 GLAISIVTYTAIISGLSKEGRSEEA 584



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 9/187 (4%)

Query: 19  INGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           +N M ++ E+D  +      +   Y+ LI    +  ++ EA ++F+KM+ +G+ A++  +
Sbjct: 269 VNEMLRLMEMDKVV-----YNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVF 323

Query: 79  NPLIHDNWE-KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
             +I  +W+ K G    A AL   L       N   Y  +I G C  G+ + A   ++++
Sbjct: 324 TSII--SWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEM 381

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             +GL   +V +N LING CKKGMI EA ++   M++KG   D  ++NT+  G    N  
Sbjct: 382 QSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRH 441

Query: 197 DRASSFL 203
           + A  +L
Sbjct: 442 EEAKRWL 448



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 37/199 (18%)

Query: 38  LDVFVYSS--LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           +DV VYS   +I+GLC   R++ A +L  +M  +GI   +VTYN L++   +        
Sbjct: 211 VDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVN 270

Query: 96  ALLQTLERDKYELNIEVYSLVIDGL----------------------------------- 120
            +L+ +E DK   N   Y+L+I+                                     
Sbjct: 271 EMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQ 330

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++G  + A    D+L+E+GLV    TY  LI+G C  G +  A+ L+ +M+ +G   + 
Sbjct: 331 CKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNL 390

Query: 181 TSFNTVIQGFLVKNETDRA 199
             FNT+I G+  K   D A
Sbjct: 391 VIFNTLINGYCKKGMIDEA 409



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTF 53
           F + E+    N   + I I+  CK        R      KKG   +V  Y++LI+G    
Sbjct: 449 FTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKK 508

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +LKEA  L D+M + G+T+++ TY  L+H          A+ LL  + R    ++I  Y
Sbjct: 509 GKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTY 568

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + +I GL + GR EEA +  D++   GL P    Y  L+  L K
Sbjct: 569 TAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 37/121 (30%)

Query: 105 KYELNIEVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----- 157
           ++++++ VYS+  VIDGLC+ GR E A+  + +++ KG+ P VVTYN L+N   K     
Sbjct: 208 EFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFE 267

Query: 158 ------------------------------KGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
                                          G I EA+K+  +M E+G   D   F ++I
Sbjct: 268 GVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSII 327

Query: 188 Q 188
            
Sbjct: 328 S 328


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNR 55
           F++ EQ   K + H Y +  + +CK    + A    ++KG+ L    Y++LI+G      
Sbjct: 440 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGN 499

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  L ++M+ +G T +  TY+ L+H   +++    A+ +L  +     +  I  Y++
Sbjct: 500 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 559

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID + R G+ + A++  ++++  G  P   TY + IN  CK+G + +A+ L+++M+ +G
Sbjct: 560 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 619

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N +I G       DRA S LK+
Sbjct: 620 VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 649



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R+N   KI+E+    K G   D + Y++LI GLC   + +EA EL +  V +G T  +VT
Sbjct: 223 RMNDALKIKELME--KNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVT 279

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           +  LI+     +    A+ +   +   K +L+++V+  +I+ L +  R +EA++ L+++S
Sbjct: 280 FTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEIS 339

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             GLVP V+TY  +I+G CK G +  A ++L  M+  GC P++ ++N+++ G +   +  
Sbjct: 340 ANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLH 399

Query: 198 RASSFLKK 205
           +A + L K
Sbjct: 400 KAMALLTK 407



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I   CK  ++ +A       ++ G+  + F  ++L+ G C    L++A  LF  M
Sbjct: 70  TYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 129

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G      +Y  LI    + +    A+ L   ++RD    N+  ++ +I GLC+ GR 
Sbjct: 130 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 189

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +AR   D + + G+VP V+TYN +I G  K G + +A K+   M++ GC PD  ++NT+
Sbjct: 190 GDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL 249

Query: 187 IQGFLVKNETDRASSFL 203
           I G L   +T+ A   L
Sbjct: 250 IYG-LCDQKTEEAEELL 265



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 14  VYGIRINGMC--KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y   I G+C  K  E    +++A+K+G    V  +++LING C   +  +A+ + +KM+
Sbjct: 245 TYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 304

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +     +L  +  LI+   +K     A  LL  +  +    N+  Y+ +IDG C+ G+ +
Sbjct: 305 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 364

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L  +   G  P   TYN L+ GL K   + +A  LL +M++ G  P+  ++ T++
Sbjct: 365 IALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLL 424

Query: 188 QGFLVKNETDRA 199
           QG   +++ D A
Sbjct: 425 QGQCDEHDFDNA 436



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  I +G   D + YS L++ LC   RL EA+ + D+M  +GI   +  Y  LI +   
Sbjct: 507 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 566

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A  +   +    ++ +   Y++ I+  C+ GR E+A   + ++  +G+ P VVT
Sbjct: 567 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 626

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           YNILI+G    G I  A   L +M    C P+  ++  +++  L  N
Sbjct: 627 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 673



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +   + K +  V+G  IN + K   +  A +        G+  +V  Y+S+I+G C   +
Sbjct: 303 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 362

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+E+   M   G      TYN L++   + +    AMALL  +++D    N+  Y+ 
Sbjct: 363 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 422

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C    ++ A +  + + + GL P    Y +L + LCK G   EA   +V+   KG
Sbjct: 423 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KG 479

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                  + T+I GF     TD A++ +++
Sbjct: 480 VALTKVYYTTLIDGFSKAGNTDFAATLIER 509



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 3   LTEQRFKGNF-HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           L +   KGN  +V  +  +GM  + E+D         +K G+   V  YSSLI G C   
Sbjct: 665 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 724

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL+EA  L D M  +G++     Y  LI    + +    A++ +  +    ++  +E Y 
Sbjct: 725 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 784

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++ GLC  G +E+ +     L E G     V + IL +GL K G +    ++L  M+++
Sbjct: 785 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 844

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C   S ++       LV N+    SS L
Sbjct: 845 YCCISSQTYA------LVTNKMHEVSSSL 867



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 23/225 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T    K +   Y + IN  CK   ++ A        ++G+  DV  Y+ LI+G     
Sbjct: 579 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 638

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD----------NWEKQGRFSAMAL---LQTL 101
            +  A     +MV         TY  L+            + +  G ++ + L    Q L
Sbjct: 639 YIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLL 698

Query: 102 ERD-KYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ER  K+ LN  +  YS +I G C+ GR EEA   LD +  KGL P    Y +LI   C  
Sbjct: 699 ERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDT 758

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               +A   +  M E G  P   S+  ++ G   + + ++  S  
Sbjct: 759 KFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 803



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 91  RFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           R SA A+ Q + R    +  L+ + Y+  +  L R    E   +   QL + GL+P  VT
Sbjct: 12  RVSADAI-QAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVT 70

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN +I   CK+G +  A +    + E G  P++ + N ++ G+    E  +A
Sbjct: 71  YNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 122


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 47/247 (19%)

Query: 6   QRFKG-----NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           QR  G     N  +Y   I GMCK + ++ A       + KGI  +V  YS+LI+G    
Sbjct: 66  QRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVV 125

Query: 54  NRLKEAVELFDK-----------------------------------MVAQGITAELVTY 78
            +LK+A++LF+K                                   M+ QGI  ++VTY
Sbjct: 126 GKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTY 185

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N L+      +   +A ++  T+ +     +I  Y+++I+G C++ + ++A    +++  
Sbjct: 186 NSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHC 245

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           K ++P VVTYN LI+GL K G I  A +L+ QM ++G  P+  ++N++I      ++ D+
Sbjct: 246 KNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDK 305

Query: 199 ASSFLKK 205
           A + + K
Sbjct: 306 AIALITK 312



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 21/204 (10%)

Query: 12  FHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           FH+    YG  I+G+CK+ E  +A+        K + L+  +Y+++I G+C    + +A 
Sbjct: 38  FHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAF 97

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-----LQTLERDKYELNIEVYSL 115
           +L+ +MV++GI+  +VTY+ LI   +       A+ L     L+ ++ D Y  NI     
Sbjct: 98  DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI----- 152

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+  + +E +     + ++G++P VVTYN L++G      +  A  +   M + G
Sbjct: 153 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG 212

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  S+N +I GF    + D+A
Sbjct: 213 VNPDIRSYNILINGFCKIKKVDKA 236



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  K + + + I ++G CK R++          +K+GI  DV  Y+SL++G      +  
Sbjct: 141 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNT 200

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M   G+  ++ +YN LI+   + +    AM L   +       N+  Y+ +ID
Sbjct: 201 AKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLID 260

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR   A + +DQ+ ++G+ P ++TYN +I+ L K   + +A  L+ + K++G  P
Sbjct: 261 GLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 320

Query: 179 DSTSFNTVIQGF 190
              ++  +I G 
Sbjct: 321 SMYTYTILIDGL 332



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 9/158 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G   ++E+++A        + G+  D+  Y+ LING C   ++ +A+ LF++M 
Sbjct: 185 YNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMH 244

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + I   +VTYN LI D   K GR S A+ L+  +       NI  Y+ +ID L +  + 
Sbjct: 245 CKNIIPNVVTYNSLI-DGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQV 303

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           ++A   + +  ++G+ P + TY ILI+GLCK G + +A
Sbjct: 304 DKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDA 341



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 74/129 (57%), Gaps = 7/129 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+++D A+        K I  +V  Y+SLI+GL    R+  A++L D+M 
Sbjct: 220 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH 279

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   ++TYN +I   ++      A+AL+   +    + ++  Y+++IDGLC+ GR +
Sbjct: 280 DRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLK 339

Query: 128 EARKKLDQL 136
           +AR   + L
Sbjct: 340 DARNIFEDL 348



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C   +I       D  +  G  LD   Y +LI+GLC     + A++L  ++  + +
Sbjct: 14  IKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLV 73

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               V YN +I+   + +    A  L   +       N+  YS +I G   VG+ ++A  
Sbjct: 74  QLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAID 133

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++  + + P   T+NIL++G CK   + E   +   M ++G  PD  ++N+++ G+ 
Sbjct: 134 LFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYR 193

Query: 192 VKNETDRASSFL 203
           +  E + A S  
Sbjct: 194 LVKEVNTAKSIF 205



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++LI GLC   ++ +A    DK+VA G   + V+Y  LIH   +     +A+ LLQ ++ 
Sbjct: 11  NTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDG 70

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              +LN  +Y+ VI G+C+     +A     ++  KG+ P VVTY+ LI+G    G + +
Sbjct: 71  KLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKD 130

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  L  ++  +   PD  +FN ++ GF
Sbjct: 131 AIDLFNKIILENIKPDGYTFNILVDGF 157


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           GI  +V+ Y  +INGLC     KEA  L ++M+++G+      Y PLI  +  K+G  S 
Sbjct: 448 GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH-SKEGNISL 506

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A   L+ + +     ++  Y+ +I GL  VGR EEA +   Q+ ++GLVP   TY+ LI+
Sbjct: 507 ACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G CK G + +AD+LL QM   G  P++ ++  +++G+   N+ ++ SS L+
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQ 617



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   I   CK R+ D+A K       +   ++   Y+ +I+GLC    ++EA    
Sbjct: 242 DVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFK 301

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++MV  G++ +  TY  L++   +      A ALL  +     + NI VY  ++DG  + 
Sbjct: 302 EEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKE 361

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EA   L ++   G+ P  + Y+ LI GLCK G +  A KLL +M + G  PD+ ++
Sbjct: 362 GKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTY 421

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N ++QG   +++ D A   L +
Sbjct: 422 NPLMQGHFQQHDKDGAFELLNE 443



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  VYG  ++G  K  +   A       I  G+  +  +Y +LI GLC   +L  A 
Sbjct: 344 LKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRAS 403

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L  +M+  G+  +  TYNPL+  ++++  +  A  LL  +       N+  Y ++I+GL
Sbjct: 404 KLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGL 463

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  +EA   L+++  +GL P    Y  LI G  K+G I  A + L +M +    PD 
Sbjct: 464 CQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDL 523

Query: 181 TSFNTVIQGFLVKNETDRASSF 202
             +N++I+G       + A  +
Sbjct: 524 FCYNSLIKGLSTVGRMEEAEEY 545



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 42/188 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + H+YGI I  + +   ++ A        K G+  D+ +YSSLI+GLC    +++AV 
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L D+M  +G+                                   E  I  Y+ +IDG C
Sbjct: 685 LLDEMAKEGL-----------------------------------EPGIVCYNALIDGFC 709

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    AR   D +  KGLVP  VTY  LI+G CK G I +A  L  +M ++G  PD+ 
Sbjct: 710 RSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAF 769

Query: 182 SFNTVIQG 189
            +N +  G
Sbjct: 770 VYNVLATG 777



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 46/231 (19%)

Query: 5   EQRFKGNFH----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           E+  K N H     Y   I G+  +  ++ A        K+G+  D F YS LI+G C  
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRF---------------- 92
             L++A +L  +M+  G+     TY  L+      +++EK                    
Sbjct: 572 GNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIY 631

Query: 93  --------------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                          A  +L  +E++    ++ +YS +I GLC++   E+A   LD++++
Sbjct: 632 GIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK 691

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           +GL PG+V YN LI+G C+ G I  A  +   +  KG  P+  ++  +I G
Sbjct: 692 EGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDG 742



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ YS+ I   C       A ++F++M  +      VTYN +I           A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
               + +       +   Y  +++GLC+  R +EA+  LD++S  GL P +V Y  L++G
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             K+G   EA  +L +M   G  P+   ++ +I+G     +  RAS  LK+
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE 408



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 48  NGLCTFNRLKEAVELFDK----MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           NGL       +A+EL  K    M   GI  ++ TY+  I  + + +   +A  + + + R
Sbjct: 212 NGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
               +N   Y+++I GLCR G  EEA    +++ + GL P   TY  L+NGLCK   + E
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKE 331

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A  LL +M   G  P+   + T++ GF+ + +T  A   LK+
Sbjct: 332 AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKE 373



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K N  +Y   I G  K   I  A        K  +  D+F Y+SLI GL T  
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVG 537

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEK--------------------- 88
           R++EA E + ++  +G+  +  TY+ LIH      N EK                     
Sbjct: 538 RMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYT 597

Query: 89  ---QGRFSA------MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              +G F +       ++LQ++     + +  +Y +VI  L R    E A   L ++ + 
Sbjct: 598 DLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 657

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLVP +  Y+ LI+GLCK   + +A  LL +M ++G  P    +N +I GF    +  RA
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 717



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 46/233 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H+Y   I+G+CKI +++ A+       K+G+   +  Y++LI+G C    +  A  +F
Sbjct: 662 DLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVF 721

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLER-----------------DK 105
           D ++A+G+    VTY  LI  N +      A  L  + L+R                 D 
Sbjct: 722 DSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDA 781

Query: 106 YEL----------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
            +L                N+ +++ ++ G C+ G+ +E  K L  + ++ +VP   T  
Sbjct: 782 ADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVE 841

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS-----FNTVIQGFLVKNETD 197
            +++   K G + EA ++  ++++K     +T      F  +I   L+  + D
Sbjct: 842 KVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSLLFTDMINKGLIPPKCD 894


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 7/180 (3%)

Query: 19  INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG C   +I E    +D  ++ G   D   +++L++GL   N+  EAV L ++MV +G 
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 211

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +LVTY  +I+   ++     A+ LL  +E+ K E ++ +Y+ +IDGLC+    ++A  
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++  KG+ P V TYN LI+ LC  G   +A +LL  M EK   PD   FN +I  F+
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I IN  C+  ++  A+       K G    +   +SL+NG C  NR+ EAV L 
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G   + VT+  L+H  ++      A+AL++ +     + ++  Y  VI+GLC+ 
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A   L+++ +  +   VV YN +I+GLCK   + +A  L  +M+ KG  PD  ++
Sbjct: 229 GEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 184 NTVIQ 188
           N +I 
Sbjct: 289 NPLIS 293



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 42/171 (24%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CK  E D A+       K  I  DV +Y+++I+GLC +  + +A +LF+KM 
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +GI  ++ TYNPLI                                     LC  GRW 
Sbjct: 278 TKGIKPDVFTYNPLI-----------------------------------SCLCNYGRWS 302

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           +A + L  + EK + P +V +N LI+   K+G ++EA+KL  +M ++   P
Sbjct: 303 DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDP 353



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +S L++ +   N+    + L ++M   GI+  L TY+  I+    +     A+A+L  + 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  Y  +I   + +++G C   R  EA   +DQ+ E G  P  VT+  L++GL +     
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA  L+ +M  KGC PD  ++  VI G   + E D A + L K
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240



 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/112 (19%), Positives = 54/112 (48%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   + + +   +I  +S ++  + ++ +++      +Q+   G+   + TY+I IN
Sbjct: 59  AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C++  +  A  +L +M + G  P   + N+++ GF   N    A + + +
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 170


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +G  I+ +CK+  +D A+ K       G+  ++FV++SL+ GLCT ++ ++A E + +M+
Sbjct: 416 FGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QGI  ++V +N ++ +   K     A  L+  +ER     ++  Y+ +I G C VGR +
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRID 535

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA K LD +   GL P   TYN L++G C+ G I +A  +  +M   G  P   +++T++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595

Query: 188 QGFLVKNETDRA 199
            G         A
Sbjct: 596 HGLFTTRRFSEA 607



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C+   ID A       ++ GI   V  YS++++GL T  R  EA EL+  M
Sbjct: 555 TYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNM 614

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G    +  YN +++   +      A  L Q+L    ++L I  ++++I  L + GR 
Sbjct: 615 ITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRN 674

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A      +S  GLVP V TY ++   L ++G + E D L   M++ G  P+S   N +
Sbjct: 675 EDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNAL 734

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L + +  RA ++L K
Sbjct: 735 VRRLLHRGDITRAGAYLSK 753



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 44/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCT-- 52
           +++    K + + YG  +N +C   + RE     DS I+KGI  +V +Y  LI+G  T  
Sbjct: 298 EMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKG 357

Query: 53  -----------------------FN----------RLKEAVELFDKMVAQGITAELVTYN 79
                                  FN           + EA+ +F+KM  QG++ ++V + 
Sbjct: 358 ALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFG 417

Query: 80  PLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D   K GR     L    +  +    NI V++ ++ GLC V +WE+A++   ++  
Sbjct: 418 ALI-DALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN 476

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G+ P VV +N ++  LC KG +M+A +L+  M+  G  PD  S+ T+I G  +    D 
Sbjct: 477 QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDE 536

Query: 199 ASSFL 203
           A+  L
Sbjct: 537 AAKSL 541



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING     ++D A       + +GI  +V  Y+++I+GLC    +  A  +F +M+
Sbjct: 206 YATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  +  TYN LIH           + +L+ +     + +   Y  +++ LC  GR  
Sbjct: 266 DKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCR 325

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EAR   D +  KG+ P V  Y ILI+G   KG + E   LL  M E G  PD   FN + 
Sbjct: 326 EARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF 385

Query: 188 QGFLVKNETDRASSFLKK 205
             +  K   D A     K
Sbjct: 386 TAYAKKAMIDEAMHIFNK 403



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 11/189 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDK 65
            Y I I   C++  ++         +K G  ++  V + L+ GLC   RL+EA++ L  +
Sbjct: 96  TYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKR 155

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M   G T ++V+YN L+     ++    A+ LL  +   +      N+  Y+ VI+G   
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFT 215

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++A     ++ ++G+ P VVTY  +I+GLCK  ++  A+ +  QM +KG  PD+ +
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 183 FNTVIQGFL 191
           +N +I G+L
Sbjct: 276 YNCLIHGYL 284



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ ++  + N   Y   I+G+CK + +D A       I KG+  D   Y+ LI+G  + 
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286

Query: 54  NRLKEAVELFDKMVAQGITAELVTY----NPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            + KE V + ++M A G+  +  TY    N L ++   ++ RF       ++ R   + N
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARF----FFDSMIRKGIKPN 342

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           + +Y ++I G    G   E    L+ + E GL P    +NI+     KK MI EA  +  
Sbjct: 343 VAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFN 402

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +MK++G  PD  +F  +I         D A
Sbjct: 403 KMKQQGLSPDVVNFGALIDALCKLGRVDDA 432



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R ++     G+  D + Y SL+N LC   R +EA   FD M+ +GI   +  Y  LIH 
Sbjct: 293 VRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIH- 351

Query: 85  NWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            +  +G  S M  LL  +  +    +  +++++     +    +EA    +++ ++GL P
Sbjct: 352 GYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSP 411

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            VV +  LI+ LCK G + +A     QM  +G  P+   FN+++ G    ++ ++A  F
Sbjct: 412 DVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)

Query: 60  VELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSL 115
           V LF++M+ +    +T +L TY+ LI   + + GR     A    + +  + +N  V + 
Sbjct: 76  VSLFNRMIRECTIKVTPDLCTYSILI-GCFCRMGRLEHGFATFGLILKSGWRVNNIVINQ 134

Query: 116 VIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE- 173
           ++ GLC   R  EA   L  ++ E G  P VV+YN L+ G C +    EA +LL  M + 
Sbjct: 135 LLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADS 194

Query: 174 --KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             + C P+  S+ TVI GF  + + D+A +   + M
Sbjct: 195 QGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMM 230



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-------MALLQTLERD---K 105
           L +A++LFD ++     A ++ +N L+       GR S+       ++L   + R+   K
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA- 164
              ++  YS++I   CR+GR E        + + G     +  N L+ GLC    + EA 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           D L+ +M E GC PD  S+NT+++GF  +   + A   L 
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLH 189



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 29/195 (14%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           N  +Y I +NG+           K  C+D                  EA +LF  + ++ 
Sbjct: 622 NIWIYNIILNGL----------SKNNCVD------------------EAFKLFQSLCSKD 653

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              E+ T+N +I   ++      AM L  T+       ++  Y L+ + L   G  EE  
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFD 713

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                + + G  P     N L+  L  +G I  A   L ++ EK  F    S   ++   
Sbjct: 714 DLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKN-FSLEASTTAMLISL 772

Query: 191 LVKNETDRASSFLKK 205
           L ++E    ++ L +
Sbjct: 773 LSRDEYHHHATSLPE 787


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           DV   + LI+  C  + + +A++LF++M  +G   ++VTYN LI   + K+GR   A+  
Sbjct: 205 DVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLI-KGFCKEGRLDEAIIF 263

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ L     + ++  +++++  LC  GRW +A K L  +  KG  P VVT+NILIN LC+
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQ 323

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           KG++ +A  +L  M + G  P+S SFN +IQGF  +   DRA   L+
Sbjct: 324 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLE 370



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 10/211 (4%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y + I G CK   +D AI         G   DV  ++ ++  LC+  
Sbjct: 231 EMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGG 290

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  +A++L   M+ +G    +VT+N LI+   +K     A+ +L+ + +  +  N   ++
Sbjct: 291 RWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFN 350

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C     + A + L+ +  +G  P +VTYNIL+  LCK G + +A  +L Q+  K
Sbjct: 351 PLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSK 410

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P   S+NTVI G L   + + A   L++
Sbjct: 411 GCSPSLISYNTVIDGLLKVGKAELAVELLEE 441



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 4/177 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y + IN  CK  EI+ A++      +  +   Y +++  LC   +LK+A+++ D+ +   
Sbjct: 142 YNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSK 201

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++VT   LI    ++ G   AM L   +     + ++  Y+++I G C+ GR +EA 
Sbjct: 202 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAI 261

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             L +L   G    V+++N+++  LC  G  M+A KLL  M  KGCFP   +FN +I
Sbjct: 262 IFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILI 318



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++    KG   DV   ++LI   C   R K A  +   +   G   +  +YN LI + 
Sbjct: 90  RFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLI-NA 148

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           + K G       L+ L+      N   Y  V+  LC  G+ ++A + LD+  +    P V
Sbjct: 149 YCKSGEIEEA--LRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDV 206

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VT  +LI+  CK+  + +A KL  +M+ KGC PD  ++N +I+GF  +   D A  FLKK
Sbjct: 207 VTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKK 266



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 92/179 (51%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ + + ++KG    V  ++ LIN LC    L +A+ + + M   G T    ++NPLI  
Sbjct: 296 MKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQG 355

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              ++G   A+  L+ +       +I  Y++++  LC+ G+ ++A   L QLS KG  P 
Sbjct: 356 FCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 415

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +++YN +I+GL K G    A +LL +M  KG  PD  +  +V+ G   + +   A  F 
Sbjct: 416 LISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFF 474



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C  + ID AI+       +G   D+  Y+ L+  LC   ++ +AV +  ++ ++G 
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 412

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +  L++YN +I D   K G+   A+ LL+ +     + ++   + V+ GL R G+  EA 
Sbjct: 413 SPSLISYNTVI-DGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAI 471

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K    L   G+ P    YN ++ GLCK      A   LV M   GC P   S+ T+I+G 
Sbjct: 472 KFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGI 531

Query: 191 LVKNETDRAS 200
             +   + AS
Sbjct: 532 TYEGLAEEAS 541



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   +  A+       K G   +   ++ LI G C    +  A+E  + M
Sbjct: 313 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIM 372

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G   ++VTYN L+    +      A+ +L  L       ++  Y+ VIDGL +VG+ 
Sbjct: 373 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 432

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L+++  KGL P ++T   ++ GL ++G + EA K    +K  G  P++  +N++
Sbjct: 433 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSI 492

Query: 187 IQGFLVKNETDRASSFL 203
           + G     +T  A  FL
Sbjct: 493 MMGLCKAQQTSLAIDFL 509



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I +  +CK  ++D A+        KG    +  Y+++I+GL    + + AVEL ++M
Sbjct: 383 TYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 442

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +L+T   ++     ++G+   A+     L+    + N  +Y+ ++ GLC+  +
Sbjct: 443 CYKGLKPDLITCTSVV-GGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQ 501

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              A   L  +   G  P   +Y  LI G+  +G+  EA KL  ++  +G
Sbjct: 502 TSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV---GRWEEARKKLDQ 135
           N  +  N +   RFS  AL          LN E     I  LCR+   G  EE  + L+ 
Sbjct: 41  NSGLKGNLQHSERFSKGALNGV----NTSLNFEESE--IHHLCRLIRNGELEEGSRFLEY 94

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++ KG +P VV    LI   CK G    A +++  ++E G   D+ S+N +I  +    E
Sbjct: 95  MTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGE 154

Query: 196 TDRA 199
            + A
Sbjct: 155 IEEA 158



 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+ K+ + + A++       KG+  D+   +S++ GL    ++ EA++ F  + 
Sbjct: 419 YNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLK 478

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI      YN ++    + Q    A+  L  +  +  +     Y+ +I G+   G  E
Sbjct: 479 GFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAE 538

Query: 128 EARKKLDQLSEKGLV 142
           EA K  ++L  +GLV
Sbjct: 539 EASKLSNELYSRGLV 553


>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 369

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI ++G CK       +R +++A +KG  LD F YS++INGLC   +L++A+ + + M
Sbjct: 96  TYGILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGM 155

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G       YN LI+          A+ + + +        I  Y+++I+GLC+  R+
Sbjct: 156 IKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNILINGLCKSERF 215

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA   + ++ EKGL P V+TY++L+ GLC    I  A +L  Q+ + G  PD    NT+
Sbjct: 216 GEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTL 275

Query: 187 IQGFLVKNETDRASSF 202
           I G     +T  A S 
Sbjct: 276 IHGLCSVGKTQLALSL 291



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK----KGI--CLDVFV-YSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+     GI  C    V Y+ LINGLC   R  EA +
Sbjct: 161 KPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNILINGLCKSERFGEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+T  ++TY+ L+           A+ L   + ++ ++ ++++++ +I GLC
Sbjct: 221 LVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +VT N L+ G  K G +  A  +  ++ +    PD  
Sbjct: 281 SVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMRNALVIWARILKNELQPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAILFL 362



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           V  ++ ++ GL    R+ E   +++ M   G   + +TY  L+H  + K G  + ++ +L
Sbjct: 59  VASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVH-GFCKNGYINKSLRVL 117

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +T ER    L+   YS +I+GLC+  + E+A   L+ + + G  P    YN LINGL   
Sbjct: 118 ETAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGA 177

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
               +A ++  +M    C P   ++N +I G L K+E
Sbjct: 178 SKSEDAIRVFREMGITHCSPTIVTYNILING-LCKSE 213


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C+  E++ A K       + + +D   Y+ LI+G C   ++ EA ++ + M
Sbjct: 398 TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM 457

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+T  +VTY  L  D   KQG   A   LL  +     ELN   Y+ +I+GLC+ G 
Sbjct: 458 VQRGVTPNVVTYTALT-DGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 516

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+A + +  +    L P V TY  LI+ LCK G +  A  LL +M +KG  P   ++N 
Sbjct: 517 LEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576

Query: 186 VIQGF 190
           ++ GF
Sbjct: 577 LMNGF 581



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ +++   +  +Y   ++G C         R  D   +KG+  D   Y+++INGLC   
Sbjct: 351 DMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAV 410

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L+EA +L  +M A+ +  + VTY  LI D + K+G+ + A  +   + +     N+  Y
Sbjct: 411 ELEEAEKLLQEMWARRLDVDEVTYTVLI-DGYCKRGKMAEAFQMHNAMVQRGVTPNVVTY 469

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + + DGLC+ G  + A + L ++S KGL     TYN LINGLCK G + +A + +  M  
Sbjct: 470 TALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDT 529

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               PD  ++ T+I       + DRA S L++
Sbjct: 530 ACLKPDVYTYTTLIDALCKSGDLDRAHSLLQE 561



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G CK  ++  A       +++G+  +V  Y++L +GLC    ++ A EL  +M
Sbjct: 433 TYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEM 492

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+     TYN LI+   +      AM  +  ++    + ++  Y+ +ID LC+ G  
Sbjct: 493 SNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDL 552

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L ++ +KG+ P +VTYN+L+NG C  G +    KLL  M EK   P++ ++N++
Sbjct: 553 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSL 612

Query: 187 IQGFLVKNETDRASSFLK 204
           ++ + ++N     +   K
Sbjct: 613 MKQYCIENNMKSTTEIYK 630



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 4/180 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y I +  +C    +  A +         DV  Y  LI+G C    L+ AV+L D+MVA G
Sbjct: 262 YNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGG 321

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +      Y  ++    +K     A+ +++ + + K  L+  +Y+ V+ G C  G    AR
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSAR 381

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  D++  KGL    VTY  +INGLC+   + EA+KLL +M  +    D  ++  +I G+
Sbjct: 382 RWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGY 441



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI I+G C + E+++A+K        G+  +  VY+S++  LC    + +A+ + + M
Sbjct: 293 TYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDM 352

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V + +  +   Y  ++     K    SA      ++R     +   Y+ +I+GLCR    
Sbjct: 353 VQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVEL 412

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA K L ++  + L    VTY +LI+G CK+G + EA ++   M ++G  P+  ++  +
Sbjct: 413 EEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTAL 472

Query: 187 IQGFLVKNETDRASSFLKK 205
             G   + +   A+  L +
Sbjct: 473 TDGLCKQGDVQAANELLHE 491



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 9/187 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y    +G+CK  ++ +A         KG+ L+   Y+SLINGLC    L++A+   
Sbjct: 465 NVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTM 524

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M    +  ++ TY  LI D   K G    A +LLQ +     +  I  Y+++++G C 
Sbjct: 525 ADMDTACLKPDVYTYTTLI-DALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR E  +K LD + EK + P   TYN L+   C +  +    ++   M+ +   P+  +
Sbjct: 584 SGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENT 643

Query: 183 FNTVIQG 189
           +N +I+G
Sbjct: 644 YNILIKG 650



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ L+  LC   R+K+A +LFD+M +     ++VTY  LIH +       +A+ LL
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLL 314

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +     E N  VY+ V+  LC  G   +A + ++ + ++ ++     Y  +++G C K
Sbjct: 315 DEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNK 374

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G ++ A +   +M+ KG   D  ++ T+I G     E + A   L++
Sbjct: 375 GDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQE 421



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+     K + + Y   I+ +CK  ++D A       + KGI   +  Y+ L+NG C   
Sbjct: 526 DMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 585

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++   +L D M+ + I     TYN L+     +    S   + + +       N   Y+
Sbjct: 586 RVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYN 645

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C+    +EA    D++ +KG      +Y+ LI  L KK   +EA +L   M+++
Sbjct: 646 ILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKE 705

Query: 175 GCFPDSTSFNTVI 187
           G   +S  ++  I
Sbjct: 706 GLTAESDVYDFYI 718



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I I G CK R +       D  I+KG  L    YS+LI  L    +  EA ELF
Sbjct: 640 NENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELF 699

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
             M  +G+TAE   Y+  I  N+ +    S +AL   L
Sbjct: 700 HDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDEL 737



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K     Y + +NG C         + +D  ++K I  +   Y+SL+   C  N
Sbjct: 561 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIEN 620

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K   E++  M ++ +     TYN LI  + + +    A+     + +  + L    YS
Sbjct: 621 NMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYS 680

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +I  L +  ++ EAR+    + ++GL      Y+  I+
Sbjct: 681 ALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYID 719


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 7/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   I  +CK   +++A +       KG+  DV  ++SLI GLC  +  + A+E
Sbjct: 369 EPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAME 428

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF++M  +G   +  TY+ LI     ++    A+ LL+ +E      N+ VY+ +IDGLC
Sbjct: 429 LFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLC 488

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R  +A    DQ+   G+    VTYN LINGLCK   + EA +L+ QM  +G  PD  
Sbjct: 489 KNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKF 548

Query: 182 SFNTVIQGFLVKNETDRASSFLK 204
           ++ T+++ F  + +  RA+  ++
Sbjct: 549 TYTTMLKYFCQQGDIKRAADIVQ 571



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 5/194 (2%)

Query: 17  IRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           + +NG+CK   I+ A++     +G C D   +++L+NGLC    +K+ +E+ D M+ +G 
Sbjct: 274 VLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGF 333

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ TYN LI    +      A+ +L  +     E N   Y+ +I  LC+    E A +
Sbjct: 334 ELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATE 393

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               L+ KG++P V T+N LI GLC       A +L  +MKEKGC PD  +++ +I+   
Sbjct: 394 LARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLC 453

Query: 192 VKNETDRASSFLKK 205
            +     A   LK+
Sbjct: 454 SERRLKEALMLLKE 467



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTF 53
           F   E+ F  +   +   +NG+C+   I       D  ++KG  LDV+ Y+SLI+GLC  
Sbjct: 291 FIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKL 350

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             + EAVE+   MV++      VTYN LI    ++    +A  L + L       ++  +
Sbjct: 351 GEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTF 410

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC     E A +  +++ EKG  P   TY+ILI  LC +  + EA  LL +M+ 
Sbjct: 411 NSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMEL 470

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC  +   +NT+I G    N    A
Sbjct: 471 SGCARNVVVYNTLIDGLCKNNRVGDA 496



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G+CK   +       D     G+      Y++LINGLC   R++EA +L 
Sbjct: 476 NVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLM 535

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +G+  +  TY  ++    ++     A  ++Q +  +  E +I  Y  +I GLC+ 
Sbjct: 536 DQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKA 595

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR + A K L  +  KG+V     YN +I  LCK+    EA +L  +M EKG  PD  ++
Sbjct: 596 GRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITY 655

Query: 184 NTVIQGF 190
             V +G 
Sbjct: 656 KIVFRGL 662



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK + ++ A       I +G+  D F Y++++   C    +K A ++   M
Sbjct: 514 TYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G   ++VTY  LI     K GR   A  LL++++     L  + Y+ VI  LC+  R
Sbjct: 574 TLNGCEPDIVTYGTLI-GGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKR 632

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEADKLLVQMKEKGCFPDSTSFN 184
            +EA +   ++ EKG  P V+TY I+  GLC   G I EA    V+M EKG  P+  SF 
Sbjct: 633 TKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFG 692

Query: 185 TVIQGF 190
            + +G 
Sbjct: 693 FLAEGL 698



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I  +C  R +  A+         G   +V VY++LI+GLC  NR+ +A ++FD+M
Sbjct: 444 TYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQM 503

Query: 67  VAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
              G++   VTYN LI+        E+  +     +++ L+ DK+      Y+ ++   C
Sbjct: 504 EMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKF-----TYTTMLKYFC 558

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  + A   +  ++  G  P +VTY  LI GLCK G +  A KLL  ++ KG      
Sbjct: 559 QQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQ 618

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           ++N VIQ    +  T  A    ++ M
Sbjct: 619 AYNPVIQALCKRKRTKEAMRLFREMM 644



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + +  + H++   IN +  + E D A+K     D   Y+  ++ L   N+LK    L  K
Sbjct: 135 ETYATSHHLHA-EINPLFLLMERDFAVKP----DTRFYNVALSLLVKANKLKLVETLHSK 189

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MVA  +  ++ T+N LI    +      A+ +L+ +       + + ++ ++ G      
Sbjct: 190 MVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEAD 249

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A +  + + E G     V+ N+L+NGLCK+G I EA + + +  E+G  PD  +FN 
Sbjct: 250 VEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNA 307

Query: 186 VIQGF 190
           ++ G 
Sbjct: 308 LVNGL 312



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 96  ALLQTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            L   +ERD   + +   Y++ +  L +  + +       ++    + P V T+NILI  
Sbjct: 149 PLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRA 208

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LCK   +  A  +L  M   G  PD  +F T++QGF+ + + + A
Sbjct: 209 LCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGA 253


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 10/210 (4%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E ++KG   N   +   I+G CK  EI  +       ++ G   D+F +SS+I+GLC   
Sbjct: 487 EMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAK 546

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A+  F +MV  G++   VTYN LIH          +M LL+ ++ D    ++  ++
Sbjct: 547 QIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFN 606

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   CR+G+ E+A+K    +   GL+P   TY   I   C+ G   EA +L + M+  
Sbjct: 607 ALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEAN 666

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GC PDS + N ++   + +++ + A    K
Sbjct: 667 GCMPDSFTCNIILDALVKQDQFEAAQKIAK 696



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
             EQ  K  F  Y   I  +    K+ E     +  +K G+  +V  Y+ +I+  C  + 
Sbjct: 418 FVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSM 477

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + +A   F +M  +GI   LVT+N LI D + K G    +  LL  L    ++ +I  +S
Sbjct: 478 MDKATNTFKEMQYKGIPPNLVTFNTLI-DGYCKGGEICKSRDLLVMLLEHGFKPDIFTFS 536

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLCR  + E+A     ++   GL P  VTYNILI+ LC  G +  + KLL +M+  
Sbjct: 537 SIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTD 596

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  SFN +IQ F
Sbjct: 597 GINPDVFSFNALIQSF 612



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 2/192 (1%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           + G  +N +C I  +D  +++G+      Y +LI  L    ++ E    F++MV  G+  
Sbjct: 403 IKGFDLNEVCNI--LDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLC 460

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
            + +YN +I    +      A    + ++      N+  ++ +IDG C+ G   ++R  L
Sbjct: 461 NVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLL 520

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
             L E G  P + T++ +I+GLC+   I +A     +M   G  P++ ++N +I    + 
Sbjct: 521 VMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCII 580

Query: 194 NETDRASSFLKK 205
            +  R+   L+K
Sbjct: 581 GDVPRSMKLLRK 592



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ VID L +    + A  K  Q+S     P   TYNILI+G+C+ G++ EA +L+ QM
Sbjct: 219 LYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQM 278

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  G  P+  ++  +I GF    + D A
Sbjct: 279 EGLGYSPNVFTYTILIDGFFNAKKVDEA 306



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+F ++   GI+     YN +I    +      A    Q +  D  + +   Y+++I G+
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G  +EA + + Q+   G  P V TY ILI+G      + EA ++L  MK +   P  
Sbjct: 263 CRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSE 322

Query: 181 TSFNTVIQG 189
            +  + I G
Sbjct: 323 ATIRSFIHG 331



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI     +Y+++I+ L   N L  A   F +M A     +  TYN LIH          A
Sbjct: 212 GISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEA 271

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L++ +E   Y  N+  Y+++IDG     + +EA + L+ +  + + P   T    I+G
Sbjct: 272 LRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHG 331

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + +     +A +L ++  E+       + +T++     KN    A + LKK
Sbjct: 332 VFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKK 382



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 42/234 (17%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+C+   +D A++        G   +VF Y+ LI+G     ++ EA  + + M
Sbjct: 254 TYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETM 313

Query: 67  VAQGITAELVTYNPLIHDNW-----------------------------------EKQGR 91
            A+ ++    T    IH  +                                    K   
Sbjct: 314 KARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMA 373

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A ALL+   +  ++ +   +++ ++ L +     E    LD+  E+G+  G  TY  L
Sbjct: 374 REAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLAL 433

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I  L   G + E +    QM + G   +  S+N VI  F   +  D+A++  K+
Sbjct: 434 IKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKE 487



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 4/173 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D F Y+ LI+G+C    + EA+ L  +M   G +  + TY  LI   +  +    A  +L
Sbjct: 251 DRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVL 310

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +T++  K   +       I G+ R     +A +   +  E+  V   +  + L+  L  K
Sbjct: 311 ETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSK 370

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSF----NTVIQGFLVKNETDRASSFLKKNM 207
            M  EA  LL +  + G  PDS +F    N +I+GF +    +    F+++ M
Sbjct: 371 NMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGM 423



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           ++ LL+ ++   Y +N E+  ++I    R+G  +   +   Q+S  G+ P    YN +I+
Sbjct: 166 SVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVID 225

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L K   +  A     QM    C PD  ++N +I G       D A   +K+
Sbjct: 226 ALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQ 277


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +  VY   + G+C+       ++ ++  +++G   D++ Y+ +INGLC    + +A 
Sbjct: 381 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAA 440

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            + +  + +G   ++ T+N LI    ++    SA+ L++ +       ++  Y+ V++GL
Sbjct: 441 VVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGL 500

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ +E  +  +++  KG  P  +TYNILI   CK   + EA  ++V+M + G  PD+
Sbjct: 501 CKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDA 560

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            SFNT+I GF    + D A    +K
Sbjct: 561 VSFNTLIHGFCRNGDLDGAYLLFQK 585



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+CK  ++  A       + +G   D F Y+++I+G C    L+EA EL    V
Sbjct: 283 YNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAV 342

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   + VTY  LI+    +     A+ L    +    + ++ VY+ ++ GLCR G   
Sbjct: 343 FKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLIL 402

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + ++++ E+G  P + TYNI+INGLCK G I +A  ++     KG  PD  +FNT+I
Sbjct: 403 HALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLI 462

Query: 188 QGFLVKNETDRASSFLKK 205
            G+  + + D A   +++
Sbjct: 463 DGYCKRLKLDSALQLVER 480



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 8/197 (4%)

Query: 15  YGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + +R+   C        +R + S  ++G       Y +++ GL        A  LFD+M+
Sbjct: 144 HTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEML 203

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + +  ++ T+N ++H   +K     + ALL  + +     N    ++ I GLC  GR E
Sbjct: 204 GRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLE 263

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   ++++    + P VVTYN L+ GLCK   + EA + L +M  +GC PD  ++NT+I
Sbjct: 264 EAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTII 322

Query: 188 QGFLVKNETDRASSFLK 204
            G+        A+  LK
Sbjct: 323 DGYCKSGMLQEATELLK 339



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + + +  DV  ++++++ LC    + E+  L  K++ +G++A   T N  I    E 
Sbjct: 200 DEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCED 259

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+AL++ +       ++  Y+ ++ GLC+  + +EA + L ++  +G +P   TY
Sbjct: 260 GRLEEAVALVERMGA-YVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTY 318

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N +I+G CK GM+ EA +LL     KG  PD  ++ ++I G   + + +RA
Sbjct: 319 NTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERA 369



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKI---REIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+CK    +E++      I KG   +   Y+ LI   C  N+L+EA  +  +M 
Sbjct: 493 YNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMC 552

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + V++N LIH          A  L Q L+   Y    + ++++I         +
Sbjct: 553 QDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ 612

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K   ++  KG  P + TY IL++GLCK   +  A   L +M  KG  P   +F  ++
Sbjct: 613 MAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRML 672

Query: 188 QGFLVKNETDRASSFL 203
               + +    A + +
Sbjct: 673 NLLAMNHRVSEAVAII 688



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y I I   CKI +++ A        + G+  D   +++LI+G C    L  A  
Sbjct: 522 RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYL 581

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF K+  +G +A   T+N LI     K     A  +   +    Y+ ++  Y +++DGLC
Sbjct: 582 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLC 641

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +    + A   L ++  KG VP + T+  ++N L     + EA  ++  M   G  P+
Sbjct: 642 KAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPE 699



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 79/164 (48%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+++++ L       +A +++ +M+A G+  +  T+   +           A+ LL++L
Sbjct: 108 AYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSL 167

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                +     Y  V+ GL   G    AR   D++  + + P V T+N +++ LC+KG +
Sbjct: 168 SERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDV 227

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ME+  LL ++ ++G   +  + N  I+G       + A + +++
Sbjct: 228 MESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVER 271



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  D   ++  +   C   R   A+ L   +  +G  A+   Y  ++   +     
Sbjct: 133 LAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHG 192

Query: 92  FSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           ++A  L  + L RD +  ++  ++ V+  LC+ G   E+   L ++ ++G+     T NI
Sbjct: 193 YNARHLFDEMLGRDVFP-DVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNI 251

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCF--PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            I GLC+ G + EA  L+ +M   G +  PD  ++NT+++G    ++   A+ +L + M
Sbjct: 252 WIRGLCEDGRLEEAVALVERM---GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMM 307


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E+R       Y   ++G  K+  +D A       +++G   D   Y+S+I+GLC   R
Sbjct: 280 MSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGR 339

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E  E F +M  +G   + VTY  LI    + +    A  + + + +    ++   Y++
Sbjct: 340 VEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNI 399

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DGLC+ GR  EA      + E+G V  VVTY+ L++G C +G +  A +L  +M ++G
Sbjct: 400 ILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 459

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P+  S+N +I+G     +  +A  + +K
Sbjct: 460 CEPNLVSYNIIIRGLCRAGKLAKAYFYFEK 489



 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 19  INGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +NG+CK  ++D A+    +     D+  ++ +INGLC   RL EA  + ++ V  G   +
Sbjct: 16  LNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPD 75

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            VTYN  I    + +    A  LL+ ++  K       Y+ ++DGL + GR +EA   L+
Sbjct: 76  YVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILE 135

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+ EKG  P + TY ++I+GL K G + EA ++ V M   GC PD+  +  +I G     
Sbjct: 136 QMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIG 195

Query: 195 ETDRASSFLKK 205
           + D A  +L +
Sbjct: 196 KLDEALVYLNQ 206



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 13/215 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E     +   + + ING+C+ + +D A       ++ G   D   Y+  I+GLC   R
Sbjct: 32  LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAER 91

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A +L  KM  +      VTY  L+ D   K GR   AMA+L+ +        ++ Y+
Sbjct: 92  VDDAFQLLKKMDEKKCLPTTVTYTALV-DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +VIDGL + GR EEAR+    +   G  P    Y  LI+GL K G + EA   L QM E 
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVEN 210

Query: 175 GCF----PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC     PD    N VI+        + A ++  +
Sbjct: 211 GCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE 245



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 103/194 (53%), Gaps = 12/194 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-----------KKGICLDVFVYSSLINGLCTFNRLK 57
           + +  VY   I+G+ KI ++D A+            +G+  DV +++ +I  LC    L+
Sbjct: 178 RPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLE 237

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A+  FD++    +     T+NPL+    + +    A+A ++ +   +    +  Y+ ++
Sbjct: 238 DALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLV 296

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG  ++GR +EA  +L +  E+G +P  VTY  +I+GLCK G + E  +   +M+ +G  
Sbjct: 297 DGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYE 356

Query: 178 PDSTSFNTVIQGFL 191
           PD+ ++  +I GF+
Sbjct: 357 PDAVTYAALIDGFM 370



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 8/193 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ++G+CK   +  A        ++G    V  YS+L++G C+   +  AVELF +M+
Sbjct: 397 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 456

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC-RVGRW 126
            +G    LV+YN +I           A    + L + +   ++  ++  + GLC R+   
Sbjct: 457 DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTV 516

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +  +  + +  +G  P + +Y+IL++G+C+ G +    ++  +M  +G  PD   FNT+
Sbjct: 517 GDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTL 576

Query: 187 IQGFLVKNETDRA 199
           I+   +    D A
Sbjct: 577 IRWLCIAGRVDEA 589



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 47/241 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------KGICLDVFV-YSSLINGLCTFNRLKEAVELF 63
           ++  Y + I+G+CK   +D A +      +  CL   V Y++L++GL    RL EA+ + 
Sbjct: 75  DYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAIL 134

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++MV +G +  L TY  +I D   K GR   A  +   +  +    +  VY+ +I GL +
Sbjct: 135 EQMVEKGNSPTLKTYTVVI-DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAK 193

Query: 123 VGRWEEARKKLDQLSEKGLVPGV------------------------------------- 145
           +G+ +EA   L+Q+ E G   GV                                     
Sbjct: 194 IGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLT 253

Query: 146 -VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             T+N L+  LCK     EA   + +M E+ CFP   ++ +++ GFL     D A   LK
Sbjct: 254 HFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLK 313

Query: 205 K 205
           +
Sbjct: 314 E 314



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G  K + I  A       ++ G  +    Y+ +++GLC   R+ EA   F  M 
Sbjct: 362 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAME 421

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G  A +VTY+ L+ D +  +G  SA + L + +     E N+  Y+++I GLCR G+ 
Sbjct: 422 ERGCVATVVTYSALM-DGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 480

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +A    ++L ++ L P V T+N  ++GLC++   + +  +L   M  +G  P+  S++ 
Sbjct: 481 AKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSI 540

Query: 186 VIQG 189
           ++ G
Sbjct: 541 LMDG 544



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           D+  ++  V + +++GLC+ G+ + A   LD++      P +V + ++INGLC++  + E
Sbjct: 3   DRKLVDTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDE 59

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A  +L +    GC PD  ++N  I G       D A   LKK
Sbjct: 60  AFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKK 101



 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    N H Y I ++G+C+   ++         + +G+  DV V+++LI  LC   R
Sbjct: 526 MVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGR 585

Query: 56  LKEAVELFDKM 66
           + EA+E+F ++
Sbjct: 586 VDEALEVFREL 596


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 14  VYGIRINGMCK---IREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C+   + E+    D   K G   +  V +++ING    ++L++A+  F  M
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G    +VTYN LI +   K  RFS A AL++ +    ++ N+  YSL+++GLC+  +
Sbjct: 491 VSKGCFPTVVTYNTLI-NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A     Q  EKG  P V  +NI+I+GLC  G + +A +L  +MK++ C P+  + NT
Sbjct: 550 LDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNT 609

Query: 186 VIQGFLVKNETDRAS 200
           +++GF    + +RAS
Sbjct: 610 LMEGFYKVRDFERAS 624



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I   C+ ++ D A        ++G   DVF Y +LIN L     + +A++LF
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLF 207

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYSLVIDGLCR 122
           D+M  +G+T ++  YN LI   ++K    +A  + + L +      NI  Y+++I+GLC+
Sbjct: 208 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+++E+ +   ++ +      + TY+ LI+GLC  G +  A ++  +M E G  PD   
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327

Query: 183 FNTVIQGFL 191
           +NT++ G+L
Sbjct: 328 YNTMLNGYL 336



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E     +  VY   +NG  +   I+  ++      K  C  V  Y+ LI GL    +
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAK 374

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+ +++ +  +   A+ +TY  L+H   +      A+++L+  E  + +L+   YS 
Sbjct: 375 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 434

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLCR GR +E    LDQ+++ G  P     N +ING  +   + +A +    M  KG
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           CFP   ++NT+I G         A + +K+
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKE 524



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+SL+N L   N+  EA   F      G++  L TYN LI  +  K+    A  LL  + 
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              +  ++  Y  +I+ L + G   +A K  D++ E+G+ P V  YNILI+G  KKG I+
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236

Query: 163 EADKLLVQ-MKEKGCFPDSTSFNTVIQGF 190
            A ++  + +K    +P+  S+N +I G 
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGL 265



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 13/165 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T+   K N HV    ING  +  +++ A++       KG    V  Y++LINGL    R
Sbjct: 455 MTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAER 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL---LQTLERDKYELNIEV 112
             EA  L  +M+ +G    ++TY+ L+  N   QG+   MAL    Q LE+  ++ ++++
Sbjct: 515 FSEAYALVKEMLHKGWKPNMITYSLLM--NGLCQGKKLDMALNLWCQALEKG-FKPDVKM 571

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++++I GLC  G+ E+A +   ++ ++  VP +VT+N L+ G  K
Sbjct: 572 HNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  Y+ +++ L    +W+EA          GL P + TYNILI   C+K    +A +LL 
Sbjct: 114 IRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLN 173

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKN 194
            M E+G  PD  S+ T+I   L KN
Sbjct: 174 WMWEQGFSPDVFSYGTLINS-LAKN 197



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 54/88 (61%), Gaps = 7/88 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           ++  + +K N   Y + +NG+C+ +++D        A++KG   DV +++ +I+GLC+  
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI 82
           ++++A++L+ +M  +     LVT+N L+
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLM 611


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E+    +   Y   IN  C+          +DS   KG+   VF Y+++INGLC   
Sbjct: 279 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 338

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPL---------------IHDNWEKQG------RFS 93
           +   A  + D+M+  G++ +  TYN L               I D    QG       FS
Sbjct: 339 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 398

Query: 94  AM--------ALLQTLE--RDKYELNIE----VYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           A+         L Q L+  RD     +     +Y+++I G CR G   EA K  D++ E+
Sbjct: 399 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 458

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G V  VVTYN ++NGLCK+ M+ EAD+L  +M E+G FPD  +F T+I G+      ++A
Sbjct: 459 GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 518

Query: 200 SSFLK 204
            +  +
Sbjct: 519 VTLFE 523



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK + +  A        ++G+  D + +++LING      + +AV LF+ M
Sbjct: 466 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVG 124
           + + +  ++VTYN LI D + K      +  L    + R  Y  +I  Y ++I+G C +G
Sbjct: 526 IQRNLKPDVVTYNTLI-DGFCKGSEMEKVNELWNDMISRRIYPNHIS-YGILINGYCNMG 583

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              EA +  D++ EKG    ++T N ++ G C+ G  ++AD+ L  M  KG  PD  ++N
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 643

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I GF+ +   DRA + + K
Sbjct: 644 TLINGFIKEENMDRAFALVNK 664



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I G C+       ++  D  +++G  LDV  Y++++NGLC    L EA ELF +M
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 490

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +  T+  LI + + K G  + A+ L + + +   + ++  Y+ +IDG C+   
Sbjct: 491 TERGVFPDFYTFTTLI-NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 549

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+  +  + +  + + P  ++Y ILING C  G + EA +L  +M EKG      + NT
Sbjct: 550 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 609

Query: 186 VIQGFLVKNETDRASSFLK 204
           +++G+       +A  FL 
Sbjct: 610 IVKGYCRAGNAVKADEFLS 628



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           F++  QR  K +   Y   I+G CK  E++         I + I  +   Y  LING C 
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 581

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
              + EA  L+D+MV +G  A ++T N ++       N  K   F +  LL+ +  D   
Sbjct: 582 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI- 640

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+ +I+G  +    + A   ++++   GL+P V+TYN+++NG  ++G + EA+ +
Sbjct: 641 ----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +++M E+G  PD +++ ++I G + +N    A
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 728



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A +    KG+C+ +   +SL+ GL     +  A E++ ++V  G+   + T N
Sbjct: 199 KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 258

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I+   + Q   +  + L  +E      ++  Y+ +I+  CR G  EEA + +D +S K
Sbjct: 259 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 318

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           GL P V TYN +INGLCK G  + A  +L +M + G  PD+ ++N ++
Sbjct: 319 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+    +F+ +   ING  K   ++ A       I++ +  DV  Y++LI+G C  +
Sbjct: 489 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 548

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++  EL++ M+++ I    ++Y  LI+          A  L   +    +E  I   +
Sbjct: 549 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCN 608

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G   +A + L  +  KG+VP  +TYN LING  K+  +  A  L+ +M+  
Sbjct: 609 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS 668

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++N ++ GF
Sbjct: 669 GLLPDVITYNVILNGF 684



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +R   N   YGI ING C +       R  D  ++KG    +   ++++ G C   
Sbjct: 559 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 618

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A E    M+ +GI  + +TYN LI+   +++    A AL+  +E      ++  Y+
Sbjct: 619 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 678

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G  R GR +EA   + ++ E+G+ P   TY  LING   +  + EA ++  +M ++
Sbjct: 679 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 738

Query: 175 GCFPD 179
           G  PD
Sbjct: 739 GFVPD 743



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 2/189 (1%)

Query: 17  IRINGMCKIREIDS-AIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +R +G+ ++  ++S  +  G C  +  V+  L+       +L+E  E F  + ++G+   
Sbjct: 159 VRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVS 218

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +   N L+    +      A  + Q + R   ++N+   +++I+ LC+  + E  +  L 
Sbjct: 219 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 278

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            + EKG+ P VVTYN LIN  C++G++ EA +L+  M  KG  P   ++N +I G     
Sbjct: 279 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 338

Query: 195 ETDRASSFL 203
           +  RA   L
Sbjct: 339 KYLRAKGVL 347


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFN 54
           +   R + +  +YG+ I+G CK   +D A        +++ I  DV +Y+S+++GLC  N
Sbjct: 157 IKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSN 216

Query: 55  RLKEAVELFDK-MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           R  EA +  D+ MV QG +  +VTY  LI    + +    A+ +   +   K +  I  Y
Sbjct: 217 RFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSY 276

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++IDGL + GR  +A + + ++   G    VV Y  LI+GLCK G + +A  L   MK 
Sbjct: 277 SVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKR 336

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G FP+  ++ T+I  F   + T+ A
Sbjct: 337 SGAFPNQRTYATLIDTFCRNDRTETA 362



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           N   Y   I+  C+    ++A      I+    LDV +Y+++++GLC   RL +A  LF 
Sbjct: 342 NQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLDVAMYTAVVSGLCRERRLDDARALFR 401

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRV 123
           +M   G++A+   YN L+H  +  +    A  +L+ L  D   + N+  Y+ VI G C  
Sbjct: 402 EMRLAGVSADTHAYNVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCC-- 459

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              E       ++ ++G+ P   TY+ LI+ L   G I  A  L  +M   G  P S   
Sbjct: 460 --LESGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSPPSGVL 517

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
             V+         D A+  ++  M
Sbjct: 518 GRVVARLCWSRRGDLAAKVIEMAM 541



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H +   I+ + K   +  A +        GI  DV  ++ +I G C    ++ A E+F
Sbjct: 94  NQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMIRGFCKNRMMERAWEIF 153

Query: 64  DKMV-AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD-KYELNIEVYSLVIDGL 120
            +M+ +     +   Y  LI D + K+ R   A+ LL+ +  + + + ++ +Y+ ++DGL
Sbjct: 154 QEMIKSNRCQPDCFLYGVLI-DGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 212

Query: 121 CRVGRWEEARKKLDQ-LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           CR  R+ EA K LD+ +  +G  P VVTY  LI G CK   +  A ++   M E+   P 
Sbjct: 213 CRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPT 272

Query: 180 STSFNTVIQGF 190
             S++ +I G 
Sbjct: 273 IVSYSVIIDGL 283



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 46/245 (18%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRL 56
           E+R + +  +Y   ++G+C+      A K        +G    V  Y+SLI G C   ++
Sbjct: 195 ERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKM 254

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF------------------------ 92
           K AV +++ M+ + I   +V+Y+ +I D   K GR                         
Sbjct: 255 KLAVRIWNAMLERKIQPTIVSYSVII-DGLSKAGRVYDAYRVVREMETLGCELNVVIYTT 313

Query: 93  ------------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
                        A AL + ++R     N   Y+ +ID  CR  R E A    D + +  
Sbjct: 314 LIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYC 373

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +  V  Y  +++GLC++  + +A  L  +M+  G   D+ ++N ++ G       + A 
Sbjct: 374 PL-DVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEEAF 432

Query: 201 SFLKK 205
             L++
Sbjct: 433 RILEE 437



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           R + + L   L       N   ++ +ID L +  R  +A + L+ + + G+ P VVT+ +
Sbjct: 76  RGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTV 135

Query: 151 LINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +I G CK  M+  A ++  +M K   C PD   +  +I G+  +   DRA   L++
Sbjct: 136 MIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLRE 191



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMK 172
           S+VID  C+ G    A   L  +   G  P     +  LI+ L K   + +A + L  M+
Sbjct: 63  SVVIDRACKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMR 122

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + G  PD  +F  +I+GF      +RA
Sbjct: 123 DAGIHPDVVTFTVMIRGFCKNRMMERA 149


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 8/188 (4%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N HVY + ++   K  + + A K       KG+  D+F Y++LI+  C  +   EA+ +
Sbjct: 201 ANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSV 260

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            D+M   G+  ++VTYN LIH  + ++GR      L    +     N   Y+ +IDG CR
Sbjct: 261 QDRMERSGVAPDIVTYNSLIH-GFSREGRMREATRLFRKIKGVVMANHVTYTTLIDGYCR 319

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +   +EA +  + +  +G  PGVVTYN ++  LC+ G I EA++LL +M  K   PD+ +
Sbjct: 320 MNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNIT 379

Query: 183 FNTVIQGF 190
            NT+I  +
Sbjct: 380 CNTLINAY 387



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   I+G C++ +ID A++       +G C  V  Y+S++  LC   R++EA  L
Sbjct: 305 ANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRL 364

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +M  + I  + +T N LI+   + +   SA+ + + +     +L++  Y  +I G C+
Sbjct: 365 LTEMSVKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCK 424

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           V   + A+++L  + EKGL PG   Y+ L++G   +    E  KL  + +++G  PD   
Sbjct: 425 VLELDNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVAL 484

Query: 183 FNTVIQGFLVKNETDRA 199
           +  +I+      + D A
Sbjct: 485 YRGLIRRICKLEQVDYA 501



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 35  GICLDVFVYSSLINGLCTF----NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           G+  D  V S + + L  F      + +++ +F+++++ G+   L     L++   +++ 
Sbjct: 124 GVSEDPEVLSHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERL 183

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             +   + + + +     NI VY++++    + G  E+A K L ++ EKG+ P + TYN 
Sbjct: 184 TDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNT 243

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI+  CKK M  EA  +  +M+  G  PD  ++N++I GF  +     A+   +K
Sbjct: 244 LISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRK 298



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 46  LINGLCTFNRLKEAV-ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
           L+N L    RL + V ++F KMV  G+ A +  YN L+H   +      A  LL  +E  
Sbjct: 174 LLNSLVK-ERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEK 232

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
               +I  Y+ +I   C+     EA    D++   G+ P +VTYN LI+G  ++G + EA
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREA 292

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +L  ++K      +  ++ T+I G+   N+ D A
Sbjct: 293 TRLFRKIK-GVVMANHVTYTTLIDGYCRMNDIDEA 326



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 42/192 (21%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CKI ++ SA+K        G+ LD++ Y +LI+G C    L  A E    M+ +G+
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDNAKEELFSMIEKGL 443

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +                   +SA                  YS ++DG     + +E  K
Sbjct: 444 SPG-----------------YSA------------------YSWLVDGFYNQNKQDEITK 468

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             ++  ++GL P V  Y  LI  +CK   +  A  L   M++KG   DS  + T+   + 
Sbjct: 469 LPEEFEKRGLCPDVALYRGLIRRICKLEQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYW 528

Query: 192 VKNETDRASSFL 203
              +   AS+  
Sbjct: 529 RTGKVTDASALF 540



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F + E+     +  Y   ++G     + D   K       +G+C DV +Y  LI  +C  
Sbjct: 436 FSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKL 495

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++  A  LF+ M  +G+  + V Y  + +  W       A AL   +   +  +N+++Y
Sbjct: 496 EQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASALFDVMYNRRLMVNLKLY 555


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E+    +   Y   IN  C+          +DS   KG+   VF Y+++INGLC   
Sbjct: 122 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 181

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPL---------------IHDNWEKQG------RFS 93
           +   A  + D+M+  G++ +  TYN L               I D    QG       FS
Sbjct: 182 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 241

Query: 94  AM--------ALLQTLE--RDKYELNIE----VYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           A+         L Q L+  RD     +     +Y+++I G CR G   EA K  D++ E+
Sbjct: 242 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 301

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G V  VVTYN ++NGLCK+ M+ EAD+L  +M E+G FPD  +F T+I G+      ++A
Sbjct: 302 GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 361

Query: 200 SSFLK 204
            +  +
Sbjct: 362 VTLFE 366



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 11/200 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+CK + +  A        ++G+  D + +++LING      + +AV LF+ M+
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGR 125
            + +  ++VTYN LI D + K      +  L    + R  Y  +I  Y ++I+G C +G 
Sbjct: 370 QRNLKPDVVTYNTLI-DGFCKGSEMEKVNELWNDMISRRIYPNHIS-YGILINGYCNMGC 427

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA +  D++ EKG    ++T N ++ G C+ G  ++AD+ L  M  KG  PD  ++NT
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 487

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I GF+ +   DRA + + K
Sbjct: 488 LINGFIKEENMDRAFALVNK 507



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I G C+       ++  D  +++G  LDV  Y++++NGLC    L EA ELF +M
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 333

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +  T+  LI+  + K G  + A+ L + + +   + ++  Y+ +IDG C+   
Sbjct: 334 TERGVFPDFYTFTTLIN-GYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 392

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+  +  + +  + + P  ++Y ILING C  G + EA +L  +M EKG      + NT
Sbjct: 393 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 452

Query: 186 VIQGFLVKNETDRASSFLK 204
           +++G+       +A  FL 
Sbjct: 453 IVKGYCRAGNAVKADEFLS 471



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           F++  QR  K +   Y   I+G CK  E++         I + I  +   Y  LING C 
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 424

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
              + EA  L+D+MV +G  A ++T N ++       N  K   F +  LL+ +  D   
Sbjct: 425 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI- 483

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+ +I+G  +    + A   ++++   GL+P V+TYN+++NG  ++G + EA+ +
Sbjct: 484 ----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +++M E+G  PD +++ ++I G + +N    A
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 571



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A +    KG+C+ +   +SL+ GL     +  A E++ ++V  G+   + T N
Sbjct: 42  KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 101

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I+   + Q   +  + L  +E      ++  Y+ +I+  CR G  EEA + +D +S K
Sbjct: 102 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 161

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           GL P V TYN +INGLCK G  + A  +L +M + G  PD+ ++N ++
Sbjct: 162 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 209



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+    +F+ +   ING  K   ++ A       I++ +  DV  Y++LI+G C  +
Sbjct: 332 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 391

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++  EL++ M+++ I    ++Y  LI+          A  L   +    +E  I   +
Sbjct: 392 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCN 451

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G   +A + L  +  KG+VP  +TYN LING  K+  +  A  L+ +M+  
Sbjct: 452 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS 511

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++N ++ GF
Sbjct: 512 GLLPDVITYNVILNGF 527



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +R   N   YGI ING C +       R  D  ++KG    +   ++++ G C   
Sbjct: 402 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 461

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A E    M+ +GI  + +TYN LI+   +++    A AL+  +E      ++  Y+
Sbjct: 462 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 521

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G  R GR +EA   + ++ E+G+ P   TY  LING   +  + EA ++  +M ++
Sbjct: 522 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 581

Query: 175 GCFPD 179
           G  PD
Sbjct: 582 GFVPD 586



 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 17  IRINGMCKIREIDS-AIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +R +G+ ++  ++S  +  G C  +  V+  L+       +L+E  E F  + ++G+   
Sbjct: 2   VRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVS 61

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +   N L+    +      A  + Q + R   ++N+   +++I+ LC+  + E  +  L 
Sbjct: 62  INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 121

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            + EKG+ P VVTYN LIN  C++G++ EA +L+  M  KG  P   ++N +I G     
Sbjct: 122 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 181

Query: 195 ETDRASSFLKK 205
           +  RA   L +
Sbjct: 182 KYLRAKGVLDE 192


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK  +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TYN +I+G CK+  +  A+ +   M  KGC PD  +F 
Sbjct: 340 KFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFT 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +K    SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  QTLERDKYEL-NIEVYSLVID-----------------------------------GLCR 122
           + +E   + + N+ +YS +ID                                   G C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA +L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           +N++I GF  ++  D A
Sbjct: 363 YNSMIDGFCKQDRLDAA 379



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA++ F +M        +VT+  L++    ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMN-GLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C+ G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 11/198 (5%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLC 121
            +M+ + I+ ++VTYN LI+  + K+G+F   A L  + L R     N   Y+ +IDG C
Sbjct: 314 QEMLERKISPDVVTYNALIN-AFVKEGKFFEAAELYDEMLPRGIIP-NTITYNSMIDGFC 371

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R + A      ++ KG  P V T+  LI+G C    I +  +LL +M  +G   ++ 
Sbjct: 372 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV 431

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++NT+I GF +  + + A
Sbjct: 432 TYNTLIHGFCLVGDLNAA 449



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 12/199 (6%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
            TE + KG F     Y   I G C       A       +++ I  DV  Y++LIN    
Sbjct: 278 FTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIE 111
             +  EA EL+D+M+ +GI    +TYN +I D + KQ R  A   +   +       ++ 
Sbjct: 338 EGKFFEAAELYDEMLPRGIIPNTITYNSMI-DGFCKQDRLDAAEDMFYLMATKGCSPDVF 396

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ +IDG C   R ++  + L ++  +GLV   VTYN LI+G C  G +  A  L  QM
Sbjct: 397 TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456

Query: 172 KEKGCFPDSTSFNTVIQGF 190
              G  PD  + NT++ G 
Sbjct: 457 ISSGVCPDIVTCNTLLDGL 475



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   + Y  LI 
Sbjct: 565 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K G I  A  +  +M   G +PD+ +   ++ GF  K E +RA + L+
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 675



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +GI  +   Y+S+I+G C  +RL  A ++F  M  +G + ++ T+  LI      
Sbjct: 349 DEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 408

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +     M LL  + R     N   Y+ +I G C VG    A     Q+   G+ P +VT 
Sbjct: 409 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTC 468

Query: 149 NILINGLCKKGMIMEADKLLVQMKEK-----------GCFPDSTSFNTVIQGFL 191
           N L++GLC  G + +A ++   M++            G  PD  ++N +I G +
Sbjct: 469 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 522



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     ++++ GL P VVT+  L++GLC +  + EA 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
               QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  + F  N   +   ING CK   +D  +       ++GI  D  +Y +LI G      
Sbjct: 572 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 631

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK   +  A       I+ G   +V  Y++LI+GLC    L  A EL  +M   G+
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + TYN +++   +      A+ L+   E      +   Y+ ++D  C+ G  ++A++
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L ++  KGL P +VT+N+L+NG C  GM+ + +KLL  M  KG  P++T+FN++++ + 
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

Query: 192 VKNETDRASSFLK 204
           ++N    A++  K
Sbjct: 608 IRNNLKAATAIYK 620



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G CK  +I +A K       + I  DV  Y+++I+G C    + EA +LF +M
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  + VT+  LI+   +      A  +   + +     N+  Y+ +IDGLC+ G  
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L ++ + GL P + TYN ++NGLCK G I EA KL+ + +  G   D+ ++ T+
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532

Query: 187 IQGFLVKNETDRASSFLKK 205
           +  +    E D+A   LK+
Sbjct: 533 MDAYCKSGEMDKAQEILKE 551



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG C+  E+D   K       KG+  + ++Y S+I  LC   +L EA E F +M+
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI  + V Y  LI D + K+G   A +     +       ++  Y+ +I G C++G  
Sbjct: 344 RQGILPDTVVYTTLI-DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++  KGL P  VT+  LING CK G + +A ++   M + GC P+  ++ T+
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   + + D A+  L +
Sbjct: 463 IDGLCKEGDLDSANELLHE 481



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+C +V  Y+ +I+ +C   R+KEA  L   M  +G T ++++Y+ ++ + + + G    
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV-NGYCRFGELDK 299

Query: 95  M-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           +  L++ ++R   + N  +Y  +I  LCR+ +  EA +   ++  +G++P  V Y  LI+
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G CK+G I  A K   +M  +   PD  ++  +I GF
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 44/224 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK  ++DSA        K G+  ++F Y+S++NGLC    ++EAV+L 
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +  A G+ A+ VTY  L+ D + K G    A  +L+ +     +  I  ++++++G C 
Sbjct: 515 GEFEAAGLNADTVTYTTLM-DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------ 152
            G  E+  K L+ +  KG+ P   T+N L+                              
Sbjct: 574 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633

Query: 153 -----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
                 G CK   + EA  L  +MK KG     ++++ +I+GFL
Sbjct: 634 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 677



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+ +F +    G+   + +YN +IH   +      A  LL  +E   Y  ++  YS V++
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G CR G  ++  K ++ +  KGL P    Y  +I  LC+   + EA++   +M  +G  P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           D+  + T+I GF  + +   AS F 
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFF 374



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++  CK  E+D A       + KG+   +  ++ L+NG C    L++  +L + M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A+GI     T+N L+     +    +A A+ + +       + + Y  ++ G C+    
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +EA     ++  KG    V TY++LI G  K+   +EA ++  QM+ +G   D   F+
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y IR N             +G+  D   Y +L+ G C    +KEA  LF +M  +G +  
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           + TY+ LI    +++    A  +   + R+    + E++    D   +  R +     +D
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPID 725

Query: 135 QLSEKGLV 142
           ++ E  LV
Sbjct: 726 EIIENYLV 733


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 5/189 (2%)

Query: 15  YGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           YG  + G+C+ R+ D A   + +   ++V + +++I G     +L  A EL++ M ++G 
Sbjct: 288 YGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGC 347

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++ TYN L+H    K GR  SA+ +L  +E      NI  YS ++   CR G W++AR
Sbjct: 348 PPDVHTYNILMH-GLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDAR 406

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             LDQ+S KG       YN +I  L K G + EA +L+ +MK +GC PD  ++NT+I   
Sbjct: 407 AMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHL 466

Query: 191 LVKNETDRA 199
              ++ D A
Sbjct: 467 CNNDQMDEA 475



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 4/178 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +  G   DV  ++ ++ GLC    ++EA  L D+M+  G T  +VTY  L+     
Sbjct: 238 LDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCR 297

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A A+L  +     E+N+ + + VI G    G+   A +  + +  KG  P V T
Sbjct: 298 TRQADEAYAMLGRVP----EVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHT 353

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YNIL++GLCK G    A ++L +M+EKGC P+  +++T++  F      D A + L +
Sbjct: 354 YNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 411



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  K +   Y   I  +C   ++D A       +++G+  +   Y++LI+ L    
Sbjct: 446 EMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSG 505

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R +E + L ++MV  G   ++V+YN LI    ++     +M LL+ +     + N   Y+
Sbjct: 506 RWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYN 565

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+ LC+ G+  +A +   ++  +GL P +VTYN LINGLCK G    A  LL ++  +
Sbjct: 566 MLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 625

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++N +I         D AS  L K
Sbjct: 626 NVHPDIVTYNILISWHCKVRLLDDASMLLDK 656



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ++G+CK       +R +D   +KG   ++  YS+L++  C      +A  + 
Sbjct: 350 DVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAML 409

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M A+G +     YN +I+    K G+   AM L+Q ++    + +I  Y+ +I  LC 
Sbjct: 410 DQMSAKGFSMNSQGYNGIIY-ALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCN 468

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             + +EA      L E+G+V   +TYN LI+ L   G   E  +L  +M   GC  D  S
Sbjct: 469 NDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVS 528

Query: 183 FNTVIQGFLVKNETDRASSFLKKNM 207
           +N +I+    +   DR+   L++ M
Sbjct: 529 YNGLIKALCKEGNVDRSMMLLEEMM 553



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 87/167 (52%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  +  +  G  LDV  Y+ LI  LC    +  ++ L ++M+ +GI     +YN LI++
Sbjct: 511 LRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINE 570

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +      A+ L + +       +I  Y+ +I+GLC+VG    A   L++L  + + P 
Sbjct: 571 LCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPD 630

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +VTYNILI+  CK  ++ +A  LL +    G  P+  ++  ++Q F+
Sbjct: 631 IVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFV 677



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F +      LC   R ++A+ L   M   G   + V Y  +IH    + G   A  LL  
Sbjct: 181 FTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDE 240

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  ++ V+ GLC +G   EA + +D++   G  P VVTY  L+ GLC+   
Sbjct: 241 MLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQ 300

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             EA  +L ++ E     +    NTVI+G L + +  RA+  
Sbjct: 301 ADEAYAMLGRVPEV----NVVMLNTVIRGCLAEGKLARATEL 338



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           A+ L D+M  +  +T    +YN ++           A+ L + + RD+       + +  
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 187

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LCR+GR  +A   L  ++  G VP  V Y  +I+ L  +G + EA  LL +M   GC 
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            D  +FN V+ G         A+  + + M
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMM 277



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ALL+ + R     +  +Y  VI  L   G   EA   LD++   G    V T+N ++ 
Sbjct: 199 ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVL 258

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC  G + EA +L+ +M   GC P   ++  +++G     + D A + L +
Sbjct: 259 GLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGR 310


>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 573

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 24/195 (12%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+ R++ +A       +++G+  DV VY+ L+NG C   RL+EA ELF +M+
Sbjct: 369 YSKLISAYCQTRDMHNARLWFHDMVERGLS-DVIVYTVLMNGYCKVGRLQEACELFVQMI 427

Query: 68  AQGITAELVTYNPLIHDNWE---KQG-------------RFSAMALLQTLERDKYELNIE 111
             GI  ++V Y  L+  + +   +QG             R     LL +++  + E ++ 
Sbjct: 428 NLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVT 487

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+    EEAR   D++  KGL+P V TY  LING C +G I +A+ L  +M
Sbjct: 488 CYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEM 547

Query: 172 KEKGCFPDSTSFNTV 186
             KG  PD  SF+ +
Sbjct: 548 IAKGMKPDVLSFSVL 562



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------------KKGICLDVFVYSSLING 49
           + E   K + H +   I G+C   + D A              ++ + ++   Y+ +I+G
Sbjct: 1   MIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDG 60

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +LKEA ++ +     G   +L +Y+ LIH + +      A   ++ +     E+N
Sbjct: 61  LCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEIN 120

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             + + ++  L ++G   E      +  + G+    V YNI ++  CK G + EA KLL 
Sbjct: 121 CYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLN 180

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M      PD   +  +I G+ +K ET+ A
Sbjct: 181 EMMAGSLVPDKIHYTCLINGYCLKGETENA 210



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 84/165 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD  +Y+  ++  C    + EAV+L ++M+A  +  + + Y  LI+    K    +A
Sbjct: 151 GVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENA 210

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + + +   + ++  Y+++  G  R G   +    L+ + ++GL P  +TY I I G
Sbjct: 211 WQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAG 270

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            C+ G + EA+ L   ++E+G    +  + +++ G+L    TD A
Sbjct: 271 FCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHA 315



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK+  ++ A+K         +  D   Y+ LING C     + A ++F++M
Sbjct: 158 LYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEM 217

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +   I  ++VTYN ++   + + G       +L+ +     E N   Y + I G CR G 
Sbjct: 218 LKANIKPDVVTYN-ILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGN 276

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA    + + E+G+    V Y  ++ G    G    A  L +++ ++G   D  S + 
Sbjct: 277 LSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSK 336

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G     +   AS+  K
Sbjct: 337 LINGLCRDEKVGEASTVCK 355



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 12/202 (5%)

Query: 1   FDLTE----QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           FD+ E    Q  + N   YGI I G C+   +  A        ++GI     +Y S++ G
Sbjct: 246 FDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCG 305

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
                    A  LF ++  QG   + ++ + LI+     +    A  + + +       +
Sbjct: 306 YLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPD 365

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  YS +I   C+      AR     + E+GL   V+ Y +L+NG CK G + EA +L V
Sbjct: 366 VISYSKLISAYCQTRDMHNARLWFHDMVERGL-SDVIVYTVLMNGYCKVGRLQEACELFV 424

Query: 170 QMKEKGCFPDSTSFNTVIQGFL 191
           QM   G  PD  ++  ++ G L
Sbjct: 425 QMINLGIKPDVVAYTVLLDGHL 446


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 114/201 (56%), Gaps = 8/201 (3%)

Query: 1   FDLTEQRFK-GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD   +R K  N   Y   ING CK++ +D A++       + +  D   Y+ L++GL  
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSK 384

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+    +L + M A G   +L+TYN L+ D  +++    A+AL Q +       NI  
Sbjct: 385 SGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRT 444

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDGLC+ GR + A++    LS KG  P + TYNI+INGL ++G++ EA+ LL++M 
Sbjct: 445 YNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMV 504

Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
           + G  P++ +F+ +++  L K
Sbjct: 505 DDGFPPNAVTFDPLVRALLEK 525



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 10/200 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CK+ +   AI       K G+  ++ +Y+ +++GLC    + EA  L  +MV
Sbjct: 164 YGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMV 223

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGR 125
            +GI  ++ TYN LIH  +   G+F     L  + + ++    ++  +++++D LC++G 
Sbjct: 224 GKGICIDVFTYNSLIH-GFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGM 282

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EAR     + ++GL P VV+ N L+NG C +G + EA ++  +M E+G  P+  S++T
Sbjct: 283 VAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYST 342

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+      D A   L +
Sbjct: 343 LINGYCKVKMVDEALRLLTE 362



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 47/241 (19%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC---------- 51
           + N  +Y + ++G+CK   +  A       + KGIC+DVF Y+SLI+G C          
Sbjct: 193 RPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVR 252

Query: 52  ----------------TFNRL----------KEAVELFDKMVAQGITAELVTYNPLIHDN 85
                           TFN L           EA  +F  M+ +G+  ++V+ N L+ + 
Sbjct: 253 LLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALM-NG 311

Query: 86  WEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           W  +G  S    +  + +ER K   N+  YS +I+G C+V   +EA + L ++ ++ LVP
Sbjct: 312 WCLRGCMSEAKEVFDRMVERGKLP-NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVP 370

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             VTYN L++GL K G ++    L+  M+  G  PD  ++N ++  +L +   D+A +  
Sbjct: 371 DTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALF 430

Query: 204 K 204
           +
Sbjct: 431 Q 431



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G  +D F  ++L+ GLC   R  EA+ L+D  V++G + + V Y  LI+   +    
Sbjct: 118 VKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKT 177

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL+ +E+     N+ +Y++V+DGLC+ G   EA     ++  KG+   V TYN L
Sbjct: 178 RDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSL 237

Query: 152 INGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGF 190
           I+G C  G    A +LL +M  K    PD  +FN ++   
Sbjct: 238 IHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDAL 277



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 22  MCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           M + +E+ D  +++G   +V  YS+LING C    + EA+ L  +M  + +  + VTYN 
Sbjct: 318 MSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNC 377

Query: 81  LIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ D   K GR      L++ +       ++  Y++++D   +    ++A      + + 
Sbjct: 378 LL-DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDT 436

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G+ P + TYNILI+GLCK G +  A ++   +  KGC P+  ++N +I G 
Sbjct: 437 GISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           ++  + + + + I ++ +CK+  +  A       IK+G+  DV   ++L+NG C    + 
Sbjct: 260 KEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMS 319

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA E+FD+MV +G    +++Y+ LI+   + +    A+ LL  + +     +   Y+ ++
Sbjct: 320 EAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGL + GR       ++ +   G  P ++TYN+L++   K+  + +A  L   + + G  
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439

Query: 178 PDSTSFNTVIQGF 190
           P+  ++N +I G 
Sbjct: 440 PNIRTYNILIDGL 452



 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVYSLV 116
           +AV  F +M+       +V+ N L+    + +   + ++L   L+ +   + ++   S+ 
Sbjct: 38  DAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIF 97

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+ L  +G+   A   + ++ ++G      T   L+ GLC KG   EA  L      KG 
Sbjct: 98  INSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGF 157

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             D   + T+I G     +T  A   L+K
Sbjct: 158 SFDEVCYGTLINGLCKMGKTRDAIELLRK 186


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK  E+  A        + G+  D+     L++GLC   RL +A+ LF
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++V  G+T ++ +Y  LIH     +    AM LL+ +       +I  YS +IDGLCR 
Sbjct: 419 NQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR   A + L+++  KG +P  +TY+IL++ L KK  + EA  L  QM ++G  PD   +
Sbjct: 479 GRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCY 538

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I G+      D A +  ++
Sbjct: 539 TIMIDGYCKSERIDEAINLFRE 560



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  I G+C + +       +D  I++G+ + V+V++ LI+GLC    L EA E+F
Sbjct: 219 NEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMF 278

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV +G    +VT   L+     K     A  L   +    ++ ++  Y++ I G C+V
Sbjct: 279 DEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKV 338

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A +  D++  +G+VP +VTYN LI+ LCK G +  A +++  M   G  PD  + 
Sbjct: 339 GRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTC 398

Query: 184 NTVIQGFLVKNETDRA 199
             ++ G       D+A
Sbjct: 399 CILLDGLCKSKRLDQA 414



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 38/211 (18%)

Query: 26  REIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           RE+  AI + G   DV+ Y+  I+G C   R+++AV +FD+M  +G+   +VTYN LI D
Sbjct: 310 RELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLI-D 368

Query: 85  NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-- 141
              K G  S A  +++T+ R     +I    +++DGLC+  R ++A    +QL E GL  
Sbjct: 369 CLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTP 428

Query: 142 ---------------------------------VPGVVTYNILINGLCKKGMIMEADKLL 168
                                            VP +VTY+ LI+GLC+ G I  A +LL
Sbjct: 429 DVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLL 488

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M  KG  PD+ +++ ++     K   D A
Sbjct: 489 NEMHVKGPLPDTITYSILLDALWKKQHLDEA 519



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           KGN  +Y I I+ +C+   +D   +        G+C + F Y SLI GLC   +  E   
Sbjct: 182 KGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFG 241

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L D+M+ +G+   +  +  LI D   K G    A  +   +    YE NI   + ++ G 
Sbjct: 242 LVDEMIRRGLDVSVYVFTVLI-DGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGY 300

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G  + AR+  D + E G    V TYN+ I+G CK G + +A ++  +M  +G  P+ 
Sbjct: 301 CLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNI 360

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++N++I       E   A   +K
Sbjct: 361 VTYNSLIDCLCKAGEVSGAWEIVK 384



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 17  IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK + +D AI       + G+  DV+ Y+ LI+G CT  R+ EA+ L   M  +
Sbjct: 400 ILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLK 459

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            +   +VTY+ LI D   + GR S A  LL  +       +   YS+++D L +    +E
Sbjct: 460 NLVPHIVTYSCLI-DGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDE 518

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A    +Q+ ++GL P V+ Y I+I+G CK   I EA  L  +M  K   PD  ++  +  
Sbjct: 519 AVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFN 578

Query: 189 G 189
            
Sbjct: 579 A 579



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L E     +   Y I I+G C  R +  A+        K +   +  YS LI+GLC   R
Sbjct: 421 LVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR 480

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A  L ++M  +G   + +TY+ L+   W+KQ    A+ L   + +   E ++  Y++
Sbjct: 481 ISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTI 540

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           +IDG C+  R +EA     ++  K LVP +VTY IL N + K G
Sbjct: 541 MIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 21/194 (10%)

Query: 15  YGIRINGMCKIREIDSAIK------------------KGICLDVFVYSSLINGLCTFNRL 56
           YGI ING+C+   ++ A+                   KG   +V +YS +I+ LC    +
Sbjct: 145 YGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKG---NVVMYSIVIDCLCRNGFV 201

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            E  E +++M+  G+     TY  LI              L+  + R   ++++ V++++
Sbjct: 202 DEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVL 261

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDGLC+ G   EAR+  D++  +G  P +VT   L+ G C KG +  A +L   + E G 
Sbjct: 262 IDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGF 321

Query: 177 FPDSTSFNTVIQGF 190
             D  ++N  I G+
Sbjct: 322 KRDVWTYNVFIHGY 335



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 43/211 (20%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G  LD    ++++ GLC    + +A+E  D++V  G +   V+Y  LI+   E    
Sbjct: 99  LKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRV 158

Query: 92  FSAMALLQTLERDKYEL--------NIEVYSLVID------------------------- 118
             A+ LL+ +E++K +         N+ +YS+VID                         
Sbjct: 159 NEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCP 218

Query: 119 ----------GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
                     GLC VG++ E    +D++  +GL   V  + +LI+GLCK GM++EA ++ 
Sbjct: 219 NEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMF 278

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +M  +G  P+  +   ++ G+ +K   D A
Sbjct: 279 DEMVNRGYEPNIVTCTALMGGYCLKGNVDMA 309



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           +  +F K++ +G   + V  N ++       G   A+     +  + + LN   Y ++I+
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 119 GLCRVGRWEEARKKLDQL-------SEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQ 170
           GLC  GR  EA   L  +        +   V G VV Y+I+I+ LC+ G + E  +   +
Sbjct: 151 GLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M   G  P+  ++ ++I+G 
Sbjct: 211 MMGNGVCPNEFTYGSLIRGL 230


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y + I+G CK+R++       D  I  G   + F +++LI+G      +  A+
Sbjct: 244 FAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASAL 303

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L+ KM+ QG   ++ T+  LI+ ++  +    AM +   +       ++  YS+++ GL
Sbjct: 304 ALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGL 363

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   R  +AR  L  L+E  +VP    YN +I+G CK G + EA+K++ +M+   C PD 
Sbjct: 364 CNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDK 423

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F  +I G  +K     A  F  K
Sbjct: 424 LTFTILIIGHCMKGRMPEAIGFFDK 448



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
             YS L+  LC  N    A  ++D M   G   +      L+  ++   GR   +  LL 
Sbjct: 73  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLV-SSYAIVGRLDVSRELLA 131

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            ++ +   +N  VY+ + + L R  +  +A     +L      P   T NILI GLC+ G
Sbjct: 132 DVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVG 191

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            I EA KLL  ++  GC PD  ++NT+I G  + NE DRA S L++
Sbjct: 192 EIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLRE 237



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L++      RL  + EL   +    +    V YN L +    +     A+ L + L R +
Sbjct: 113 LVSSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLR 172

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y+      +++I GLCRVG  +EA K L  L   G +P V+TYN LI+GLC    +  A 
Sbjct: 173 YKPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRAR 232

Query: 166 KLLVQMKEKGCF-PDSTSFNTVIQGF 190
            LL ++   G F PD  S+  +I G+
Sbjct: 233 SLLREVCLNGEFAPDVVSYTMIISGY 258



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 1/154 (0%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           ++  VY+ L N L   N++ +AV LF +++         T N LI           A  L
Sbjct: 140 VNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGEIDEAFKL 199

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLC 156
           L+ L       ++  Y+ +I GLC +   + AR  L ++   G   P VV+Y ++I+G C
Sbjct: 200 LKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYTMIISGYC 259

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K   + E   L  +M   G  P++ +FN +I GF
Sbjct: 260 KLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGF 293


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 106/196 (54%), Gaps = 20/196 (10%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I+G C  + +D  +K       +G+  +   Y++LI+G C    L  A++L  +M
Sbjct: 390 TFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEM 449

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELN-----------IEVYS 114
           ++ G+   +VT N L+ D     G+   A+ + + +++ K +L+           ++ Y+
Sbjct: 450 ISSGVCPNVVTCNTLL-DGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYN 508

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL   G++ EA +  +++  +GLVP  +TYN +I+GLCK+  + EA ++   M  K
Sbjct: 509 ILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSK 568

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  +F T+I G+
Sbjct: 569 GFSPDVVTFTTLINGY 584



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
            Q  K N   +   +NG+C+       +  +D  ++ G+  +   Y ++++G+C      
Sbjct: 170 HQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 229

Query: 58  EAVELFDKM-VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            A+ L  KM     I   +V Y+ +I   W+   +  A  L   ++      N+  Y+ +
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+G C  GRW EA++ L ++ E+ + P VVT+++LIN L K+G   EA++L  +M  +G 
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI 349

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            P++ ++N++I GF  +N  D A
Sbjct: 350 IPNTITYNSMIDGFSKQNRLDAA 372



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 113/212 (53%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E   + N   YG  ++GMCK+ +  SA+           I  +V +YS++I+GL    
Sbjct: 203 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDG 262

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A  LF +M  +GI+  L TYN +I + +   GR+S A  LL+ +   K   ++  +
Sbjct: 263 RQTDAQNLFSEMQEKGISPNLFTYNCMI-NGFCSSGRWSEAQRLLREMFERKMSPDVVTF 321

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++I+ L + G++ EA +  +++  +G++P  +TYN +I+G  K+  +  A+++   M  
Sbjct: 322 SVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT 381

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC PD  +F+ +I G+      D     L +
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVDDGMKLLHE 413



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   ING C         R +    ++ +  DV  +S LIN L    
Sbjct: 273 EMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEG 332

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVY 113
           +  EA EL+++M+ +GI    +TYN +I D + KQ R  A   +  L   K    ++  +
Sbjct: 333 KFFEAEELYNEMLPRGIIPNTITYNSMI-DGFSKQNRLDAAERMFYLMATKGCSPDVITF 391

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++IDG C   R ++  K L ++S +GLV   +TY  LI+G C+ G +  A  LL +M  
Sbjct: 392 SILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMIS 451

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P+  + NT++ G 
Sbjct: 452 SGVCPNVVTCNTLLDGL 468



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K   +D+A +       KG   DV  +S LI+G C   R+ + ++L 
Sbjct: 352 NTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLL 411

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G+ A  +TY  LIH   +     +A+ LLQ +       N+   + ++DGLC  
Sbjct: 412 HEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNN 471

Query: 124 GRWEEA--------RKKLDQLSEKG---LVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A        + K+D  +      + P V TYNILI GL  +G   EA++L  +M 
Sbjct: 472 GKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMP 531

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ ++N+VI G   ++  D A+
Sbjct: 532 HRGLVPDTITYNSVIDGLCKQSRLDEAT 559



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKE 58
            R K N  +Y   I+G+ K  R+ D+        +KGI  ++F Y+ +ING C+  R  E
Sbjct: 242 SRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSE 301

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  L  +M  + ++ ++VT++ LI+   ++   F A  L   +       N   Y+ +ID
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G  +  R + A +    ++ KG  P V+T++ILI+G C    + +  KLL +M  +G   
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVA 421

Query: 179 DSTSFNTVIQGF 190
           ++ ++ T+I GF
Sbjct: 422 NTITYTTLIHGF 433



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           DV  Y+ LI GL    +  EA EL+++M  +G+  + +TYN +I D   KQ R   A  +
Sbjct: 503 DVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVI-DGLCKQSRLDEATQM 561

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             ++    +  ++  ++ +I+G C+VGR  +  +   ++  +G+V   +TY  LI+G C+
Sbjct: 562 FDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQ 621

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G I  A  +  +M   G +PD+ +   ++ G   K E  RA
Sbjct: 622 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I  +++ ++ LI   C+ ++L  A+  F K+   G    LVT++ L+H    +     A+
Sbjct: 107 IPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEAL 166

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
                + +     N+  ++ +++GLCR GR  EA   LD++ E GL P  +TY  +++G+
Sbjct: 167 HFFHQICKP----NVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 222

Query: 156 CKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGF 190
           CK G  + A  LL +M+E     P+   ++ +I G 
Sbjct: 223 CKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGL 258



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   Y+S+I+GLC  +RL EA ++FD M ++G + ++VT+  LI + + K GR  
Sbjct: 533 RGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLI-NGYCKVGRVG 591

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             + +   + R     N   Y  +I G C+VG    A     ++   G+ P  +T   ++
Sbjct: 592 DGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNML 651

Query: 153 NGLCKK 158
            GL  K
Sbjct: 652 TGLWSK 657



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   +   ING CK+  +   +       ++GI  +   Y +LI+G C    +  A+
Sbjct: 570 FSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGAL 629

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           ++F +M++ G+  + +T   ++   W K+
Sbjct: 630 DIFQEMISSGVYPDTITIRNMLTGLWSKE 658


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 9/178 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK + ++  +K       KG+  +   Y+ LI G C   R   A E+F++M
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            ++    ++ TYN L+ D     G+   A+ + + + + + ++NI  Y+++I G+C++G+
Sbjct: 390 SSRRAPPDIRTYNVLL-DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            E+A      L  KG+ P V+TY  +I+G C++G+I EAD L  +MKE G  P+ + +
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   +   +NG C    I+ AI         G   +V  Y++LI  LC    L  AV
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ELF++M   G    +VTYN L+    E      A  LL+ + + + E N+  ++ +ID  
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +VG+  EA++  + + +  + P V TY  LINGLC  G++ EA ++   M+  GC+P+ 
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328

Query: 181 TSFNTVIQGF 190
             + T+I GF
Sbjct: 329 VIYTTLIHGF 338



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 91/168 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   D+  ++SL+NG C +NR+++A+ LFD+++  G    +VTY  LI    + +  
Sbjct: 145 MKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHL 204

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ L   +  +    N+  Y+ ++ GLC +GRW +A   L  + ++ + P V+T+  L
Sbjct: 205 NHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTAL 264

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+   K G +MEA +L   M +   +PD  ++ ++I G  +    D A
Sbjct: 265 IDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEA 312



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+C    +D A        + G   +  +Y++LI+G C   R+++ +++F +M 
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+ A  +TY  LI           A  +   +   +   +I  Y++++DGLC  G+ E
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVE 415

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    + + ++ +   +VTY I+I G+CK G + +A  L   +  KG  P+  ++ T+I
Sbjct: 416 KALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMI 475

Query: 188 QGFLVKNETDRASSFLKK 205
            GF  +     A S  KK
Sbjct: 476 SGFCRRGLIHEADSLFKK 493



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 11/217 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++R + N   +   I+   K+ ++  A       I+  +  DVF Y SLINGLC + 
Sbjct: 248 DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG 307

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA ++F  M   G     V Y  LIH   + +     M +   + +     N   Y+
Sbjct: 308 LLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C VGR + A++  +Q+S +   P + TYN+L++GLC  G + +A  +   M+++
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 175 GCFPDSTSFNTVIQGFL----VKNETDRASSFLKKNM 207
               +  ++  +IQG      V++  D   S   K M
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464



 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 35  GICLDVFVYSS----LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           G C  +  +SS    L NGL    +  +A++LF +MV       ++ +  L+     K  
Sbjct: 40  GFCFWIRAFSSYRKILRNGLHNL-QFNDALDLFTRMVHSRPLPSIIDFTRLL-SVIAKMN 97

Query: 91  RFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           R+   ++L + ++       +   ++V+  +C   +   A   L ++ + G  P +VT+ 
Sbjct: 98  RYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFT 157

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            L+NG C    I +A  L  Q+   G  P+  ++ T+I+
Sbjct: 158 SLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+ + +D+A         KG   +   Y++LI+G C   R+ EA++LF +M
Sbjct: 241 TYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQM 300

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                   + TY  +I    +   +  A+ + + +     + N+  Y+++I  LC    +
Sbjct: 301 HEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNF 360

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A+K L+ + EKGL+P VVTYN LI+G CKKG+   A ++L  M+   C P++ ++N +
Sbjct: 361 DDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNEL 420

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF       +A S L K
Sbjct: 421 ILGFCRGKNIHKAMSLLHK 439



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+  + N H Y + I  +C+    D A       ++KG+   V  Y++LI+G C   
Sbjct: 334 EMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A+E+   M +   +    TYN LI      +    AM+LL  +   K + N+  Y+
Sbjct: 394 LSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYN 453

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C+ G    A K L  ++E GLVP   TY++ I+ LCK+G++ EA  L   +KEK
Sbjct: 454 ILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513

Query: 175 GCFPDSTSFNTVIQGF 190
           G   +   ++T+I G+
Sbjct: 514 GIKANEVIYSTLIDGY 529



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ LI  LC  +   +A ++ + M+ +G+   +VTYN LI    +K    SA+ +L
Sbjct: 343 NVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEIL 402

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +E +    N   Y+ +I G CR     +A   L ++ E+ L P VVTYNILI+G CK+
Sbjct: 403 SLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKE 462

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G +  A KLL  M E G  PD  +++  I     +   + A S  +
Sbjct: 463 GDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFE 508



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +CK       R +  ++K KGI  +  +YS+LI+G C   ++ +   L DKM
Sbjct: 486 TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           ++ G     +TYN LI D + K+  F  A  L+  + +   E   + Y+++ID L +   
Sbjct: 546 LSAGCVPNSITYNSLI-DGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDE 604

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +++A    DQ+   G  P V  Y   I+  C  G + +A+ L+ +M  KG  PD+  +  
Sbjct: 605 FDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL 664

Query: 186 VIQGFLVKNETDRASSFLKK 205
            I  +      D A   LK+
Sbjct: 665 FIDAYGRFGSIDGAFGILKR 684



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E+  K N  +Y   I+G CK+ ++       D  +  G   +   Y+SLI+G C    
Sbjct: 510 LKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKN 569

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            KEA  L D M+ + I     TY  LI DN  K   F  A  +   +       ++ +Y+
Sbjct: 570 FKEARLLVDIMIKRDIEPAADTYTILI-DNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYT 628

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I   C  GR ++A   + +++ KG++P  + Y + I+   + G I  A  +L +M E 
Sbjct: 629 AFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEV 688

Query: 175 GCFPDSTSFNTVIQ 188
           GC P   +++ +I+
Sbjct: 689 GCEPSYYTYSCLIK 702



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 44/214 (20%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ + K  E D A       +  G   DVF+Y++ I+  C+  RLK+A  L  KM
Sbjct: 591 TYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM 650

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS----AMALLQTLERDKYELNIEVYSLVIDGLC- 121
            A+GI  + + Y   I    +  GRF     A  +L+ +     E +   YS +I  L  
Sbjct: 651 NAKGIMPDTMLYTLFI----DAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSN 706

Query: 122 ----------------------------RVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                                       R   +E       +++E G  P   TY   I 
Sbjct: 707 AKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFIT 766

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           GLCK G +  A +L   MKEKG  P+   +N+++
Sbjct: 767 GLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLL 800



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   +   Y   I GLC    L+ A  LFD M  +G +     YN L+  + +     
Sbjct: 751 EHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYG 810

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+  L  +  +++  +++   L++ GL   G  E+A++      +       + + +LI
Sbjct: 811 EAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLI 870

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +GL KKG+  +   L   M+ +GC     +++ +I+GF
Sbjct: 871 DGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----------- 82
           KGI  D  +Y+  I+    F  +  A  +  +M   G      TY+ LI           
Sbjct: 653 KGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEV 712

Query: 83  ------------------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
                              + W +      + L   +       N   Y   I GLC+VG
Sbjct: 713 SSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVG 772

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E A +  D + EKG  P    YN L+   C+ G+  EA + L  M E    P   S  
Sbjct: 773 CLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCK 832

Query: 185 TVIQGFLVKNETDRA 199
            ++ G   +   ++A
Sbjct: 833 LLLCGLYDEGNDEKA 847



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 53/97 (54%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           K++L +  Y++++  L R    +E +    ++ +  + P + T N ++NG CK G ++EA
Sbjct: 164 KFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEA 223

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           +  + ++ + G   D+ ++ ++I G+      D A++
Sbjct: 224 ELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANA 260



 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E     N + YG  I G+CK+       R  D   +KG   +  +Y+SL+   C    
Sbjct: 749 MAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGL 808

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA+   D M+       L +   L+   +++     A  +  +  + +Y  +  V+ +
Sbjct: 809 YGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKV 868

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +IDGL + G  ++       +  +G      TY++LI G 
Sbjct: 869 LIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 61/145 (42%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            ++LF KM   G      TY   I    +      A  L   ++      N ++Y+ ++ 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C++G + EA + LD + E   +P + +  +L+ GL  +G   +A ++     +     
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNY 861

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           D   +  +I G L K  +D+ S   
Sbjct: 862 DEMVWKVLIDGLLKKGLSDKCSDLF 886


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 14  VYGIRINGMCK---IREI----DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C+   + E+    D   K G   +  V +++ING    ++L++A+  F  M
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G    +VTYN LI +   K  RFS A AL++ +    ++ N+  YSL+++GLC+  +
Sbjct: 491 VSKGCFPTVVTYNTLI-NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A     Q  EKG  P V  +NI+I+GLC  G + +A +L  +MK++ C P+  + NT
Sbjct: 550 LDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNT 609

Query: 186 VIQGFLVKNETDRAS 200
           +++GF    + +RAS
Sbjct: 610 LMEGFYKVRDFERAS 624



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I   C+ ++ D A        ++G   DVF Y +LIN L     + +A++LF
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLF 207

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYSLVIDGLCR 122
           D+M  +G+T ++  YN LI   ++K    +A  + + L +      NI  Y+++I+GLC+
Sbjct: 208 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+++E+ +   ++ +      + TY+ LI+GLC  G +  A ++  +M E G  PD   
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327

Query: 183 FNTVIQGFL 191
           +NT++ G+L
Sbjct: 328 YNTMLNGYL 336



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E     +  VY   +NG  +   I+  ++      K  C  V  Y+ LI GL    +
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAK 374

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA+ +++ +  +   A+ +TY  L+H   +      A+++L+  E  + +L+   YS 
Sbjct: 375 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 434

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLCR GR +E    LDQ+++ G  P     N +ING  +   + +A +    M  KG
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           CFP   ++NT+I G         A + +K+
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKE 524



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 13/211 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T+   K N HV    ING  +  +++ A++       KG    V  Y++LINGL    R
Sbjct: 455 MTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAER 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL---LQTLERDKYELNIEV 112
             EA  L  +M+ +G    ++TY+ L+  N   QG+   MAL    Q LE+  ++ ++++
Sbjct: 515 FSEAYALVKEMLHKGWKPNMITYSLLM--NGLCQGKKLDMALNLWCQALEKG-FKPDVKM 571

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++I GLC  G+ E+A +   ++ ++  VP +VT+N L+ G  K      A K+   + 
Sbjct: 572 HNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + G  PD  S+N  ++G    +    A  FL
Sbjct: 632 QYGPQPDIISYNITLKGLCSCHRISDAVGFL 662



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+SL+N L   N+  EA   F      G++  L TYN LI  +  K+    A  LL  + 
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              +  ++  Y  +I+ L + G   +A K  D++ E+G+ P V  YNILI+G  KKG I+
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236

Query: 163 EADKLLVQ-MKEKGCFPDSTSFNTVIQGF 190
            A ++  + +K    +P+  S+N +I G 
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGL 265



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 92/167 (55%), Gaps = 7/167 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           ++  + +K N   Y + +NG+C+ +++D        A++KG   DV +++ +I+GLC+  
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A++L+ +M  +     LVT+N L+   ++ +    A  +   + +   + +I  Y+
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYN 643

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           + + GLC   R  +A   L+   ++G++P  +T+NIL+  +   G +
Sbjct: 644 ITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  Y+ +++ L    +W+EA          GL P + TYNILI   C+K    +A +LL 
Sbjct: 114 IRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLN 173

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKN 194
            M E+G  PD  S+ T+I   L KN
Sbjct: 174 WMWEQGFSPDVFSYGTLINS-LAKN 197


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 9/188 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I + G+CK  E+D A +        G+ L+V  YS +I+G C  +R+ +A+E+F  M
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTM 134

Query: 67  VAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G    ++VT+N L+      +    A  L + + +   E N+  YS ++DGLC+ GR
Sbjct: 135 SSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGR 194

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA +  +++ EK  VP +V Y   + GLCK   + EA     +M  KG   D+ +F+T
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 186 VIQGFLVK 193
           VI G L K
Sbjct: 255 VI-GILCK 261



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++ +CK +++D A          G+  DV  YS+L++GLC   +L  A +L 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLL 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M  +G+  +  T +  I +   K G+   A++ L+T++      ++  Y+ ++DGLC+
Sbjct: 398 EEMSKEGVFPDSFT-DASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR +EA   L ++      P V +Y I+I  LC+ G    A  +  +M ++G  PD+  
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 183 FNTVIQGFLVKNETDRASSFLKKNM 207
           +++++ G       D A   LK ++
Sbjct: 517 YHSLLDGLARNGLEDLALELLKTSL 541



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 62/256 (24%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK   +D A       ++K    D+  Y+S + GLC  NR+ EA +  
Sbjct: 178 NVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCC 237

Query: 64  DKMVAQGITAELVTY--------------------------------------------- 78
            KMV +G  A+ V +                                             
Sbjct: 238 RKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNH 297

Query: 79  -------NPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCRVGRWEE 128
                  N LIH   + +     + L Q ++  K      N+E Y++++D LC+  + +E
Sbjct: 298 PPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDE 357

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A++ +++++  GL P VVTY+ L++GLCK G +  A  LL +M ++G FPDS +  +++ 
Sbjct: 358 AQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILN 417

Query: 189 GFLVKNETDRASSFLK 204
                 + D A S L+
Sbjct: 418 ALSKAGKVDYALSHLE 433



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    VF Y+  ++ L   N  + A E F +M  +G   +  TY+ ++    +     
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNIL 151
            A  LL  L     +LN+  YS+VIDG C+  R ++A +    +S   G VP VVT+N L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSL 150

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + GLC    + EA  L   M + GC P+  S++T++ G       D A
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++++LI+ +C   RL + V LF +M +         L TYN ++ +  + +    A  L+
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       ++  YS ++DGLC++G+ + A   L+++S++G+ P   T   ++N L K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A   L  MK +G  PD  ++NT++ G       D A +FL K
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 41/226 (18%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK+ ++D A        K+G+  D F  +S++N L    ++  A+   + M
Sbjct: 376 TYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETM 435

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+G T +LVTYN L+ D   K GR   A+  L  +   K   ++  Y+++I  LCR G+
Sbjct: 436 KARGSTPDLVTYNTLL-DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 126 WEEARKKLDQLSEKGLVPGVVTYN--------------------------------ILIN 153
              A     ++ ++G++P  V Y+                                ++++
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLD 554

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLCK G   +A +++ +M + G   D+ ++ +V+ G     + D+A
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKA 600



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 53  FNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
             ++   V LFD +  Q G    + TYN  +    +      A    Q ++R  Y  +  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDF 74

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS+V+ GLC+ G  ++A++ L QL E G+   V+TY+++I+G CK   + +A ++   M
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTM 134

Query: 172 KE-KGCFPDSTSFNTVIQGF 190
               GC PD  +FN++++G 
Sbjct: 135 SSGGGCVPDVVTFNSLLKGL 154



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   ID AI          C  DVF Y+ +I  LC   +   A  +F +M
Sbjct: 446 TYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEM 505

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  + V Y+ L+ D   + G    +AL + L+    + +  ++ +V+DGLC+ G+ 
Sbjct: 506 VKRGVLPDTVLYHSLL-DGLARNG-LEDLAL-ELLKTSLCKPDFVMHKMVLDGLCKAGKA 562

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           E+A + ++++++ G      TY  +++GL K G + +A +L+    E
Sbjct: 563 EDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 90  GRFSAMA-LLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           G+ S +  L   L R K Y+ ++  Y+  +D L +    + A +K  Q+  +G  P   T
Sbjct: 16  GKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT 75

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y+I++ GLCK G + +A +LL Q++E G   +  +++ VI G    +  D A    K
Sbjct: 76  YSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFK 132


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 13/207 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGIC-LDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y   I+G+CK   +D A K        G C  DV  +++LI+G C   RL +A +L
Sbjct: 328 NLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQL 387

Query: 63  FDKMVAQGI-TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
             +M A+ I   ++VTYN LI D   K G    A  LLQ ++    + N+  Y+ +I+G 
Sbjct: 388 LIEMKAKNICVPDVVTYNTLI-DGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGY 446

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFP 178
            + G +EEA    D++S KG  P ++TYN +++   K GM+ +A+ +  Q+K K   C P
Sbjct: 447 AKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSP 506

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D+ ++  +I G+    +T++  + L++
Sbjct: 507 DAITYRILIDGYCRAEDTEQGLTLLQE 533



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 12/201 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK  ++D  +       + GI  DV  + S+I+GLC  NR+ +A ++F  M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS--LVIDGLCRV 123
           + +G   + +TY+ ++ DN  +  R   +  +L+ ++  K    +EVY+    I  LCR 
Sbjct: 249 LERGCVPDSLTYSIML-DNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRS 307

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTS 182
           G++  A+  L  + E G +P +++YN +I+GLCK G + +A KL  +M + GC  PD   
Sbjct: 308 GKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIF 367

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           FNT+I GF       +A   L
Sbjct: 368 FNTLISGFCKAGRLSQAHQLL 388



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 44/241 (18%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  +   Y   I+G+CK  ++D+A          G   +V  Y++LI+GLC   R  +A+
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 65

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +   +M+  G   +LVTYN LIH          A  +LQ L R+ +  N   YS ++   
Sbjct: 66  QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWN 125

Query: 121 CRVGRWEEAR-------------------------------------KKLDQLSEKGLVP 143
           CR  R ++AR                                     +  D++ E G +P
Sbjct: 126 CRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIP 185

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            VVTYN  I+GLCK G + +  ++L +M   G  PD  +F ++I G    N  D A    
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVF 245

Query: 204 K 204
           K
Sbjct: 246 K 246



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 44/238 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK R    AI       + G   D+  Y+SLI+GLC  NR+ +A  + 
Sbjct: 44  NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 103

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL---------------------- 101
            ++V  G     +TY+ L+  N  ++    A  L++ +                      
Sbjct: 104 QELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEA 163

Query: 102 --ERDKYEL-------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
             +  +YE              ++  Y+  I GLC+ G+ ++  + L+++   G+ P VV
Sbjct: 164 RCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVV 223

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           T+  +I+GLCK   I +A ++   M E+GC PDS +++ ++      N  D     L+
Sbjct: 224 TFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLE 281



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 61/105 (58%)

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +  + Y+ ++  Y+ +IDGLC+ G  + A+  L ++++ G  P VVTY  LI+GLCK   
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +A + + +M   GC PD  ++N++I G  + N  D A   L++
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQE 105



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R+ D  I+ G   DV  Y++ I+GLC   +L + +E+ ++M   GI  ++VT+  +I   
Sbjct: 173 RDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGL 232

Query: 86  WEKQGRFSAMALLQ-TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKGLV 142
            +      A  + +  LER     ++  YS+++D L R  R +   + L+ +   + G V
Sbjct: 233 CKANRIDDAFQVFKGMLERGCVPDSL-TYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCV 291

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             V T+N  I  LC+ G    A  +L+ M E G  P+  S+N VI G       D A   
Sbjct: 292 MEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKL 351

Query: 203 LKK 205
            +K
Sbjct: 352 SRK 354



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 5/171 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           +V  Y++LING       +EA  LFD+M A+G   +++TYN ++   + K G  S A  +
Sbjct: 435 NVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLS-AFSKAGMMSKAEGV 493

Query: 98  LQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            Q L+      + +   Y ++IDG CR    E+    L +++ +G      TYN+LI  L
Sbjct: 494 YQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKL 553

Query: 156 CKKGMI-MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +   +  +A  +  QM ++ C P ++ FN++++ FL   + + A S +++
Sbjct: 554 AETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQE 604



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A G  A +VTY  LI D   K G   +A ALLQ +       N+  Y+ +IDGLC+  
Sbjct: 1   MAANGYDASVVTYTTLI-DGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKAR 59

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  +A + + ++   G  P +VTYN LI+GLC    + +A  +L ++   G  P+  +++
Sbjct: 60  RPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYS 119

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T++     +   D+A   +++
Sbjct: 120 TLVIWNCRRRRLDQARGLIRE 140


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y++LI+GLC   +L EA+E + +M   G    + TY  L+    E      A++L   + 
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               E N+  Y+++ID LC+ GR +EA K L+++ EKG+ P VV +N LI   CK+GM+ 
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMME 377

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +A  +L  M+ K   P+  ++N +I GF      DRA + L K
Sbjct: 378 DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNK 420



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            K +C +V  Y+ LI G C    +  A+ L +KMV   ++ ++VTYN LIH   E     
Sbjct: 388 SKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVD 447

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA  L + + RD +  +   ++  +  LCR+GR  EA + L+ L EK +      Y  LI
Sbjct: 448 SASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +G CK G I  A  L  +M  + C P+S +FN +I G 
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL 545



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   +V+ Y+ LI+ LC   R+ EA+++ ++MV +G+   +V +N LI    ++    
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMME 377

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ +L  +E  K   N+  Y+ +I G CR    + A   L+++ E  L P VVTYN LI
Sbjct: 378 DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +GLC+ G++  A +L   M   G  PD  +FN  +
Sbjct: 438 HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFM 472



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + N + Y + I+ +CK   +D A+K       KG+   V  +++LI   C   
Sbjct: 315 EMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRG 374

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++AV +   M ++ +   + TYN LI      +    AMALL  +   K   ++  Y+
Sbjct: 375 MMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYN 434

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VG  + A +    +   G  P   T+N  +  LC+ G + EA ++L  +KEK
Sbjct: 435 TLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEK 494

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               +  ++  +I G+    + + A+S  K+
Sbjct: 495 HVKANEHAYTALIDGYCKAGKIEHAASLFKR 525



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C+ + +D A       ++  +  DV  Y++LI+GLC    +  A  LF
Sbjct: 394 NVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLF 453

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M+  G + +  T+N  +     + GR   A  +L++L+    + N   Y+ +IDG C+
Sbjct: 454 RLMIRDGFSPDQWTFNAFM-VCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCK 512

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E A     ++  +  +P  +T+N++I+GL K+G + +A  L+  M +    P   +
Sbjct: 513 AGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHT 572

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +++  L + + DRA+  L +
Sbjct: 573 YNILVEEVLKEYDFDRANEILNR 595



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+F Y+SL+ G C  + ++ A  +F  M  +      V+Y  LIH   E      A+   
Sbjct: 223 DLFTYTSLVLGYCRNDDVERACGVFCVMPRRNA----VSYTNLIHGLCEAGKLHEALEFW 278

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +  D     +  Y++++  LC  GR  EA     ++ E+G  P V TY +LI+ LCK+
Sbjct: 279 ARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKE 338

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + EA K+L +M EKG  P    FN +I  +
Sbjct: 339 GRMDEALKMLNEMVEKGVAPSVVPFNALIGSY 370



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 97/179 (54%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++S  +K +  +   Y++LI+G C   +++ A  LF +M+A+      +T+N +I D   
Sbjct: 488 LESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMI-DGLR 546

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K+G+   AM L++ + +   +  +  Y+++++ + +   ++ A + L++L   G  P VV
Sbjct: 547 KEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVV 606

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TY   I   C +G + EA+++++++K +G   DS  +N +I  +      D A   L++
Sbjct: 607 TYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRR 665



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 7/207 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA---IKKGI---CL-DVFVYSSLINGLCTFN 54
            L E+  K N H Y   I+G CK  +I+ A    K+ +   CL +   ++ +I+GL    
Sbjct: 490 SLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEG 549

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A+ L + M    +   L TYN L+ +  ++     A  +L  L    Y+ N+  Y+
Sbjct: 550 KVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYT 609

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I   C  GR EEA + + ++  +G++     YN+LIN     G++  A  +L +M   
Sbjct: 610 AFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGT 669

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASS 201
           GC P   +++ +++  +++      S+
Sbjct: 670 GCEPSYLTYSILMKHLVIEKHKKEGSN 696



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQ-GRF 92
           ++   ++++N  C    +  A   F +++      +L TY  L+     +D+ E+  G F
Sbjct: 188 NLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVF 247

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             M             N   Y+ +I GLC  G+  EA +   ++ E G  P V TY +L+
Sbjct: 248 CVMP----------RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLV 297

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LC+ G  +EA  L  +M+E+GC P+  ++  +I     +   D A   L +
Sbjct: 298 CALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNE 350



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G   ++  YS LINGLC   RL  A  L+  M   GI+   + +N L+  +  K G F  
Sbjct: 734 GCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLL-SSCCKLGMFGE 792

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ LL ++    +  ++E Y L+I GL      E+A      L   G     V + +LI+
Sbjct: 793 AVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLID 852

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           GL K G + +  +LL  M++ GC     +++ ++Q
Sbjct: 853 GLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 88/235 (37%), Gaps = 36/235 (15%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNR 55
           L    ++ N   Y   I   C   ++ E +  + K    G+ LD F+Y+ LIN       
Sbjct: 596 LISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGL 655

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----------------------------DNW 86
           L  A  +  +M   G     +TY+ L+                              D W
Sbjct: 656 LDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIW 715

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            K        L + +       N+  YS +I+GLC+VGR   A      + E G+ P  +
Sbjct: 716 SKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEI 775

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            +N L++  CK GM  EA  LL  M E        S+  +I G   +   ++A +
Sbjct: 776 IHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEA 830



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   ING+CK+  ++ A        + GI     +++SL++  C      EAV L 
Sbjct: 738 NLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLL 797

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M+     A L +Y  LI   +E+  +  A A+  +L R  Y  +   + ++IDGL + 
Sbjct: 798 DSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKT 857

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           G  ++  + L+ + + G      TY++L+  L
Sbjct: 858 GYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +   K   H Y I +  + K  + D A       I  G   +V  Y++ I   C+  
Sbjct: 560 DMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQG 619

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL+EA E+  K+  +G+  +   YN LI+         SA  +L+ +     E +   YS
Sbjct: 620 RLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYS 679

Query: 115 LVIDGLCRVGRWEEARKKL-----------------------------DQLSEKGLVPGV 145
           +++  L      +E    +                             ++++E G VP +
Sbjct: 680 ILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNL 739

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            TY+ LINGLCK G +  A  L   M+E G  P     N+++  
Sbjct: 740 NTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSS 783


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S + +GI  D   Y+ L+NGL   +++ +A E+F +M  +GI  ++ +Y  LI+  + K 
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN-GFSKL 640

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A ++   +  +    N+ +Y++++ G CR G  E+A++ LD++S KGL P  VTY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             +I+G CK G + EA +L  +MK KG  PDS  + T++ G    N+ +RA +    N
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y + I+G+ K R  D+A       +  GI +  ++Y   I  +     +++A  LFD 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+A G+  +   Y  LI     ++       LL  +++    ++   Y  V+ G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   + ++   G  P VV Y  LI    +     +A ++L +MKE+G  PD   +N+
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       D A SFL
Sbjct: 493 LIIGLSKAKRMDEARSFL 510



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I+G CK  ++  A +       KG+  D FVY++L++G C 
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-----EKQGRFSAMALLQTLERDKY- 106
            N ++ A+ +F     +G  +    +N LI  NW     + + +   +  L     D++ 
Sbjct: 745 LNDVERAITIFGTN-KKGCASSTAPFNALI--NWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + N   Y+++ID LC+ G  E A++   Q+    L+P V+TY  L+NG  K G   E   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +    G  PD   ++ +I  FL +  T +A
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 9/197 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y   I G C+ + +           K+ I +  + Y +++ G+C+   L  A  +  +
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+A G    +V Y  LI   + +  RF  AM +L+ ++      +I  Y+ +I GL +  
Sbjct: 443 MIASGCRPNVVIYTTLIK-TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +EAR  L ++ E GL P   TY   I+G  +      ADK + +M+E G  P+     
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 185 TVIQGFLVKNETDRASS 201
            +I  +  K +   A S
Sbjct: 562 GLINEYCKKEKVIEACS 578



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 2/194 (1%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           F    + ++G  K++E  S I KG+    + Y  LI+GLC   RL++A  L  +M + G+
Sbjct: 251 FRTATLNVDGALKLKE--SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGV 308

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +  TY+ LI    + +   +A  L+  +      +   +Y   I  + + G  E+A+ 
Sbjct: 309 SLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D +   GL+P    Y  LI G C++  + +  +LLV+MK++       ++ TV++G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 192 VKNETDRASSFLKK 205
              + D A + +K+
Sbjct: 429 SSGDLDGAYNIVKE 442



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  + GMC   ++D A       I  G   +V +Y++LI      +R  +A+ +  +
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  QGI  ++  YN LI    + +    A + L  +  +  + N   Y   I G      
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +  A K + ++ E G++P  V    LIN  CKK  ++EA      M ++G   D+ ++  
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G    ++ D A    ++
Sbjct: 598 LMNGLFKNDKVDDAEEIFRE 617



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y   I G+ K + +D A       ++ G+  + F Y + I+G    +
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A +   +M   G+    V    LI++  +K+    A +  +++       + + Y+
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYT 596

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GL +  + ++A +   ++  KG+ P V +Y +LING  K G + +A  +  +M E+
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P+   +N ++ GF    E ++A   L
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+G+CKI+ ++ A          G+ LD   YS LI+GL        A  L  +
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ GI  +   Y+  I    ++     A AL   +         + Y+ +I+G CR   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +  + L ++ ++ +V    TY  ++ G+C  G +  A  ++ +M   GC P+   + T
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+ FL  +    A   LK+
Sbjct: 458 LIKTFLQNSRFGDAMRVLKE 477



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 36/196 (18%)

Query: 29  DSAIKKGICLD-VFVYSS---------------LINGLCTFNRLKEAVELFDKMVAQGIT 72
           D  I KG   + VFV+SS               L++ L  +NRL    +++  MV + + 
Sbjct: 159 DGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVV 218

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEA 129
            ++ TY+ LI  +  + G          L +D   K E      +L +DG         A
Sbjct: 219 FDVKTYHMLIIAHC-RAGNVQ-------LGKDVLFKTEKEFRTATLNVDG---------A 261

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K  + +  KGLVP   TY++LI+GLCK   + +A  LLV+M   G   D+ +++ +I G
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 190 FLVKNETDRASSFLKK 205
            L     D A   + +
Sbjct: 322 LLKGRNADAAKGLVHE 337



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 2   DLTEQRF-KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           D +  RF K N   Y I I+ +CK   +++A +         +   V  Y+SL+NG    
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYEL 108
            R  E   +FD+ +A GI  + + Y+ +I+   ++     A+ L+  +       D  +L
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +I     ++ G  +VG  E A K ++ +     +P   T   LIN  C
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM------A 96
           Y+ +I+ LC    L+ A ELF +M    +   ++TY  L++  ++K GR + M      A
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN-GYDKMGRRAEMFPVFDEA 866

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNIL 151
           +   +E D       +YS++I+   + G   +A   +DQ+  K  V       + T   L
Sbjct: 867 IAAGIEPDHI-----MYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           ++G  K G +  A+K++  M      PDS +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S + +GI  D   Y+ L+NGL   +++ +A E+F +M  +GI  ++ +Y  LI+  + K 
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN-GFSKL 640

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A ++   +  +    N+ +Y++++ G CR G  E+A++ LD++S KGL P  VTY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             +I+G CK G + EA +L  +MK KG  PDS  + T++ G    N+ +RA +    N
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y + I+G+ K R  D+A       +  GI +  ++Y   I  +     +++A  LFD 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+A G+  +   Y  LI     ++       LL  +++    ++   Y  V+ G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   + ++   G  P VV Y  LI    +     +A ++L +MKE+G  PD   +N+
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       D A SFL
Sbjct: 493 LIIGLSKAKRMDEARSFL 510



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I+G CK  ++  A +       KG+  D FVY++L++G C 
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-----EKQGRFSAMALLQTLERDKY- 106
            N ++ A+ +F     +G  +    +N LI  NW     + + +   +  L     D++ 
Sbjct: 745 LNDVERAITIFGTN-KKGCASSTAPFNALI--NWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + N   Y+++ID LC+ G  E A++   Q+    L+P V+TY  L+NG  K G   E   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +    G  PD   ++ +I  FL +  T +A
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  + GMC   ++D A       I  G   +V +Y++LI      +R  +A+ +  +
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  QGI  ++  YN LI    + +    A + L  +  +  + N   Y   I G      
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +  A K + ++ E G++P  V    LIN  CKKG ++EA      M ++G   D+ ++  
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G    ++ D A    ++
Sbjct: 598 LMNGLFKNDKVDDAEEIFRE 617



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 9/197 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y   I G C+ + +           K+ I +  + Y +++ G+C+   L  A  +  +
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+A G    +V Y  LI   + +  RF  AM +L+ ++      +I  Y+ +I GL +  
Sbjct: 443 MIASGCRPNVVIYTTLIK-TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +EAR  L ++ E GL P   TY   I+G  +      ADK + +M+E G  P+     
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 185 TVIQGFLVKNETDRASS 201
            +I  +  K +   A S
Sbjct: 562 GLINEYCKKGKVIEACS 578



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 2/194 (1%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           F    + ++G  K++E  S I KG+    + Y  LI+GLC   RL++A  L  +M + G+
Sbjct: 251 FRTATLNVDGALKLKE--SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGV 308

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +  TY+ LI    + +   +A  L+  +      +   +Y   I  + + G  E+A+ 
Sbjct: 309 SLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D +   GL+P    Y  LI G C++  + +  +LLV+MK++       ++ TV++G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 192 VKNETDRASSFLKK 205
              + D A + +K+
Sbjct: 429 SSGDLDGAYNIVKE 442



 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 50/235 (21%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   YG+ ING  K+  +       D  +++G+  +V +Y+ L+ G C   
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +++A EL D+M  +G+    VTY  +I D + K G  + A  L   ++      +  VY
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTII-DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735

Query: 114 SLVIDGLCRV----------------------------------GRWEEARKKLDQLSEK 139
           + ++DG CR+                                  G+ E   + L++L + 
Sbjct: 736 TTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDG 795

Query: 140 GL----VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                  P  VTYNI+I+ LCK+G +  A +L  QM+     P   ++ +++ G+
Sbjct: 796 SFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y   I G+ K + +D A       ++ G+  + F Y + I+G    +
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A +   +M   G+    V    LI++  +K     A +  +++       + + Y+
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GL +  + ++A +   ++  KG+ P V +Y +LING  K G + +A  +  +M E+
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P+   +N ++ GF    E ++A   L
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+G+CKI+ ++ A          G+ LD   YS LI+GL        A  L  +
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ GI  +   Y+  I    ++     A AL   +         + Y+ +I+G CR   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +  + L ++ ++ +V    TY  ++ G+C  G +  A  ++ +M   GC P+   + T
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+ FL  +    A   LK+
Sbjct: 458 LIKTFLQNSRFGDAMRVLKE 477



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 43/210 (20%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLDVFVYSS---------------LINGLCTFNRLKE 58
           ++GI  +G      I+ A        VFV+SS               L++ L  +NRL  
Sbjct: 153 LFGILFDGYIAKEYIEEA--------VFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDL 204

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSL 115
             +++  MV + +  ++ TY+ LI  +  + G          L +D   K E      +L
Sbjct: 205 FWDVYKGMVERNVVFDVKTYHMLIIAHC-RAGNVQ-------LGKDVLFKTEKEFRTATL 256

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +DG         A K  + +  KGLVP   TY++LI+GLCK   + +A  LLV+M   G
Sbjct: 257 NVDG---------ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLG 307

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              D+ +++ +I G L     D A   + +
Sbjct: 308 VSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 2   DLTEQRF-KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           D +  RF K N   Y I I+ +CK   +++A +         +   V  Y+SL+NG    
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYEL 108
            R  E   +FD+ +A GI  + + Y+ +I+   ++     A+ L+  +       D  +L
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +I     ++ G  +VG  E A K ++ +     +P   T   LIN  C
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM------A 96
           Y+ +I+ LC    L+ A ELF +M    +   ++TY  L++  ++K GR + M      A
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN-GYDKMGRRAEMFPVFDEA 866

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNIL 151
           +   +E D       +YS++I+   + G   +A   +DQ+  K  V       + T   L
Sbjct: 867 IAAGIEPDHI-----MYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           ++G  K G +  A+K++  M      PDS +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  I+ +CK+  +D A+ K       G+  D+FV+SSL+ GLCT ++ ++A +LF +++
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVL 439

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI      +N L+  N  ++GR   A  L+  + R     ++  Y+ ++DG C  GR 
Sbjct: 440 DQGIRLNAAFFNILMC-NLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRI 498

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K LD +   GL P   TYN L++G CK   I +A  L  +M  KG  P   ++NT+
Sbjct: 499 DEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTI 558

Query: 187 IQGFL 191
           + G  
Sbjct: 559 LHGLF 563



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H++ I  N   K   ID A+       ++ +   V  Y +LI+ LC   R+ +AV  F
Sbjct: 341 DHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKF 400

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T ++  ++ L++     D WEK  +     L Q +      LN   +++++ 
Sbjct: 401 NQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIR-----LNAAFFNILMC 455

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LCR GR  EA++ +D +    + P V++YN L++G C  G I EA KLL  M   G  P
Sbjct: 456 NLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKP 515

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++NT++ G+      D A S  ++
Sbjct: 516 DEFTYNTLLHGYCKARRIDDAYSLFRE 542



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G C    ID A K        G+  D F Y++L++G C   R+ +A  LF +M+
Sbjct: 485 YNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREML 544

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRV--- 123
            +G+T  +VTYN ++H  ++  GRF  A  L   +  ++ + +I  Y+++++GLCR    
Sbjct: 545 MKGLTPGVVTYNTILHGLFQI-GRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFV 603

Query: 124 --------------------------------GRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                           GR E+A      +S  GLVP V TY ++
Sbjct: 604 DEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLI 663

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              L K+G + E D+L   M+E G  P+S   N +++  L + +  RA  +L K
Sbjct: 664 AENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSK 717



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 11/204 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N  ++G  + G+C  + +D A         + G  L+V  Y+ L+ GLC   R +EA+EL
Sbjct: 127 NTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALEL 186

Query: 63  FDKMVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
              M   G    T  +VTY  +I    + Q    A  + Q +       N   Y+ +I G
Sbjct: 187 MHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHG 246

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
               G+W+E  + L ++S  GL P  V Y +L++ LCK G   EA  +   +  KG  P 
Sbjct: 247 YLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPH 306

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
            T +  ++ G+  +       SFL
Sbjct: 307 VTIYGILLHGYATEGALSEMHSFL 330



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 10/212 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCT 52
           FD L  +  K +  +YGI ++G      + E    +D  ++ G+  D  +++ + N    
Sbjct: 295 FDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAK 354

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIE 111
              + EA+ +FDKM  Q ++  +V Y  LI D   K GR     L    +  +    +I 
Sbjct: 355 KAMIDEAMHIFDKMRQQWLSPGVVNYGALI-DALCKLGRVDDAVLKFNQMINEGVTPDIF 413

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           V+S ++ GLC V +WE+A K   ++ ++G+      +NIL+  LC++G +MEA +L+  M
Sbjct: 414 VFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLM 473

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                 PD  S+NT++ G  +    D A+  L
Sbjct: 474 LRVDVRPDVISYNTLVDGHCLTGRIDEAAKLL 505



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 10/201 (4%)

Query: 15  YGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           Y I + G+C  +  + A++               +V  Y+++I+GLC    +  A  +F 
Sbjct: 167 YNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQ 226

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            M+ +G+     TY  LIH           + +LQ +     + +  +Y++++D LC+ G
Sbjct: 227 HMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNG 286

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  EAR   D L  KG+ P V  Y IL++G   +G + E    L  M   G  PD   FN
Sbjct: 287 RCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFN 346

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +   +  K   D A     K
Sbjct: 347 IMFNAYAKKAMIDEAMHIFDK 367



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNR 55
           + ++  + N H Y   I+G     K +E+   +++    G+  D  +Y+ L++ LC   R
Sbjct: 228 MIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGR 287

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
             EA  +FD ++ +GI   +  Y  L+H  +  +G  S M + L  + R+    +  +++
Sbjct: 288 CTEARNIFDSLIRKGIKPHVTIYGILLH-GYATEGALSEMHSFLDLMVRNGVSPDHHIFN 346

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ +   +    +EA    D++ ++ L PGVV Y  LI+ LCK G + +A     QM  +
Sbjct: 347 IMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINE 406

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD   F++++ G    ++ ++A
Sbjct: 407 GVTPDIFVFSSLVYGLCTVDKWEKA 431



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--- 112
           L +A++LFD+M+     A + T+N L+      +   ++  ++    R   E +++V   
Sbjct: 32  LDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPS 91

Query: 113 ---YSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEA-DKL 167
              Y+++I   CR+GR +        + + G  +   V +  L+ GLC    + EA D L
Sbjct: 92  SCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDIL 151

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L +M E GC  +  S+N +++G   +   + A
Sbjct: 152 LRRMPEFGCTLNVISYNILLKGLCNEKRAEEA 183


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ING+C+   ++E    ++   K+    D   +++LING C      +A+ L 
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MV  G++  +VTY  LI+   +      AM  L  +       N   Y+ +IDG  + 
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++A + + ++ E G  P ++TYN LING C  G + +A  LL +M E+G  PD  S+
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 184 NTVIQGFLVKNETDRA 199
           +T+I GF    E ++A
Sbjct: 452 STIISGFCRNQELEKA 467



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++R+  +   +   ING C +     A       +K G+  +V  Y++LIN +C   
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAG 357

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            L  A+E  D+M  +G+     TY  LI D + +QG    A  +++ +  + +   I  Y
Sbjct: 358 NLNRAMEFLDQMRDRGLHPNGRTYTTLI-DGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C +GR E+A   L ++ E+G +P VV+Y+ +I+G C+   + +A +L V+M  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  PD  +++++IQG 
Sbjct: 477 KGISPDVATYSSLIQGL 493



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+  CK+R+I  A K       KG+  ++  Y+ +INGLC   ++KE  E+ 
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +    + VT+N LI+          A+ L   + ++    N+  Y+ +I+ +C+ 
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A + LDQ+ ++GL P   TY  LI+G  ++G + +A +++ +M E G  P   ++
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G  +    + AS  L++
Sbjct: 417 NALINGHCILGRMEDASGLLQE 438



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E     N + Y I I G C    ++  +       + G   +V  Y+++I+  C   
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA +L   M  +G+   L++YN +I+    +        +L+ + + +Y  +   ++
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C VG + +A     ++ + GL P VVTY  LIN +CK G +  A + L QM+++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++ T+I GF
Sbjct: 373 GLHPNGRTYTTLIDGF 388



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ F  +   Y   I+G C+ +E++ A       + KGI  DV  YSSLI GLC   
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL E  +LF +M++ G+  + VTY  LI+    +     A+ L   + +  +  +I  Y+
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+G  +  R +EA++ L +L  +  VP  +TYN LI+               G C KG
Sbjct: 558 VLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKG 617

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EAD++L  M +KG   +   +N +I G       ++A +  K+
Sbjct: 618 LMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKE 663



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 17  IRINGMCKIRE--IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           IR     KI E      ++ G+  +V+ Y+ LI G CT   L+  +  F +M   G    
Sbjct: 178 IRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPN 237

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +VTYN +I    + +    A  LL+ +       N+  Y++VI+GLCR G+ +E  + L+
Sbjct: 238 VVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILE 297

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++S++  VP  VT+N LING C  G   +A  L  +M + G  P+  ++ T+I       
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAG 357

Query: 195 ETDRASSFLKK 205
             +RA  FL +
Sbjct: 358 NLNRAMEFLDQ 368



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 26/230 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E  F      Y   ING C +  ++ A       I++G   DV  YS++I+G C   
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A +L  +MVA+GI+ ++ TY+ LI    +++       L Q +       +   Y+
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G  ++A +  D++ +KG  P +VTYN+LING  K+    EA +LL+++  +
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 175 GCFPDSTSFNTVI---------------QGFLVK---NETDRA-SSFLKK 205
              P+  ++NT+I               +GF +K   NE DR   S L+K
Sbjct: 583 ESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ +     N   Y   IN MCK   ++ A++       +G+  +   Y++LI+G     
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            LK+A ++  +MV  G T  ++TYN LI+ +        A  LLQ +    +  ++  YS
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR    E+A +   ++  KG+ P V TY+ LI GLCK+  + E   L  +M   
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++ ++I  + ++ + D+A
Sbjct: 513 GLPPDEVTYTSLINAYCIEGDLDKA 537



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 14  VYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  C        +R  D  I+KG   D+  Y+ LING    +R KEA  L  K+
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMAL----------------LQTLERDKYELNI 110
           + +      +TYN LI DN       SA+AL                L+++ +  Y+LN 
Sbjct: 580 LYEESVPNEITYNTLI-DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           EVY+++I G  +VG  E+A     ++   G  P  VT   L   L  +G  +E ++LL
Sbjct: 639 EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 97  LLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L Q L+   Y+   +  V+ LV+    RV    +A   ++     G +PGV++YN +++ 
Sbjct: 117 LFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDA 176

Query: 155 LCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + + K  +  A+ +  +M E G  P+  ++N +I+GF
Sbjct: 177 VIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGF 213


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 7/193 (3%)

Query: 19   INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            ING CK   +  A       I+ G   +V  Y++LI+GLC    L  A EL  +M   G+
Sbjct: 871  INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 930

Query: 72   TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               + TYN +++   +      A+ L+   E      +   Y+ ++D  C+ G  ++A++
Sbjct: 931  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 990

Query: 132  KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             L ++  KGL P +VT+N+L+NG C  GM+ + +KLL  M  KG  P++T+FN++++ + 
Sbjct: 991  ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 1050

Query: 192  VKNETDRASSFLK 204
            ++N    A++  K
Sbjct: 1051 IRNNLKAATAIYK 1063



 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G CK  +I +A K       + I  DV  Y+++I+G C    + EA +LF +M
Sbjct: 796 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 855

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  + VT+  LI+   +      A  +   + +     N+  Y+ +IDGLC+ G  
Sbjct: 856 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 915

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L ++ + GL P + TYN ++NGLCK G I EA KL+ + +  G   D+ ++ T+
Sbjct: 916 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 975

Query: 187 IQGFLVKNETDRASSFLKK 205
           +  +    E D+A   LK+
Sbjct: 976 MDAYCKSGEMDKAQEILKE 994



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG C+  E+D   K       KG+  + ++Y S+I  LC   +L EA E F +M+
Sbjct: 727 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 786

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI  + V Y  LI D + K+G   A +     +       ++  Y+ +I G C++G  
Sbjct: 787 RQGILPDTVVYTTLI-DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++  KGL P  VT+  LING CK G + +A ++   M + GC P+  ++ T+
Sbjct: 846 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   + + D A+  L +
Sbjct: 906 IDGLCKEGDLDSANELLHE 924



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+C +V  Y+ +I+ +C   R+KEA  L   M  +G T ++++Y+ ++ + + + G    
Sbjct: 684 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV-NGYCRFGELDK 742

Query: 95  M-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           +  L++ ++R   + N  +Y  +I  LCR+ +  EA +   ++  +G++P  V Y  LI+
Sbjct: 743 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 802

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G CK+G I  A K   +M  +   PD  ++  +I GF
Sbjct: 803 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 839



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 44/224 (19%)

Query: 11   NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            N   Y   I+G+CK  ++DSA        K G+  ++F Y+S++NGLC    ++EAV+L 
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 64   DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +  A G+ A+ VTY  L+ D + K G    A  +L+ +     +  I  ++++++G C 
Sbjct: 958  GEFEAAGLNADTVTYTTLM-DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 1016

Query: 123  VGRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------ 152
             G  E+  K L+ +  KG+ P   T+N L+                              
Sbjct: 1017 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 1076

Query: 153  -----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
                  G CK   + EA  L  +MK KG     ++++ +I+GFL
Sbjct: 1077 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 1120



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+ +F +    G+   + +YN +IH   +      A  LL  +E   Y  ++  YS V++
Sbjct: 673 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 732

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G CR G  ++  K ++ +  KGL P    Y  +I  LC+   + EA++   +M  +G  P
Sbjct: 733 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 792

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           D+  + T+I GF  + +   AS F 
Sbjct: 793 DTVVYTTLIDGFCKRGDIRAASKFF 817



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 14   VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   ++  CK  E+D A       + KG+   +  ++ L+NG C    L++  +L + M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +A+GI     T+N L+     +    +A A+ + +       + + Y  ++ G C+    
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            +EA     ++  KG    V TY++LI G  K+   +EA ++  QM+ +G   D   F+
Sbjct: 1091 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148



 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 15   YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
            Y IR N             +G+  D   Y +L+ G C    +KEA  LF +M  +G +  
Sbjct: 1049 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 1108

Query: 75   LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            + TY+ LI    +++    A  +   + R+    + E++    D   +  R +     +D
Sbjct: 1109 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPID 1168

Query: 135  QLSEKGLV 142
            ++ E  LV
Sbjct: 1169 EIIENYLV 1176


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 8/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           L E  +K  +   G R+ G          I  G+  +VF Y+ +IN  C    +  A E 
Sbjct: 400 LIEVLYKNEWREEGDRVYG--------QLISDGLISNVFSYNMIINCFCRAKLMDNASEA 451

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F  M  +G+   LVT+N LI+ + +      A  LL++L  +  + +I  +S ++DGLC+
Sbjct: 452 FRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQ 511

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           + R EEA +   ++ E G+ P  V YNILI  LC  G +  + KLL +M+++G  PD+ S
Sbjct: 512 IKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYS 571

Query: 183 FNTVIQGFLVKNETDRA 199
           +N +IQ F   N+ ++A
Sbjct: 572 YNALIQIFCRMNKVEKA 588



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   ING CK   ID A       ++ G+  D+F +SS+++GLC   R +EA+E F
Sbjct: 463 NLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECF 522

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+  GI    V YN LI           ++ LL+ ++++    +   Y+ +I   CR+
Sbjct: 523 TEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRM 582

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E+A+K  D +S  GL P   TY+  I  L + G + EA K+   M+  GC PDS   
Sbjct: 583 NKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYIC 642

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I+  + +   + A + +++
Sbjct: 643 NLIIKILVQQEYVEEAQNIIER 664



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+E  ++F+ +  QG+ A +  Y  LI   ++ + R     +   L  D    N+  Y++
Sbjct: 375 LRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNM 434

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+  CR    + A +    +  +G+VP +VT+N LING CK G I +A KLL  + E G
Sbjct: 435 IINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENG 494

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  +F++++ G      T+ A
Sbjct: 495 LKPDIFTFSSIVDGLCQIKRTEEA 518



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ +ID L +    + A  K  Q++    V    TYN LI+G+CK G++ EA +L+ QM
Sbjct: 181 LYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQM 240

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K+KG FP+  ++  +I+GF + +  D A
Sbjct: 241 KDKGHFPNVFTYTMLIEGFCIASRVDEA 268



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 35/155 (22%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+     +Y++LI+ L   N +  A   F +M A    A+  TYN LIH           
Sbjct: 174 GLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIH----------- 222

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                                   G+C+VG  +EA + + Q+ +KG  P V TY +LI G
Sbjct: 223 ------------------------GVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEG 258

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            C    + EA  +   MK+ G +P+  +   ++ G
Sbjct: 259 FCIASRVDEAFGVFETMKDSGVYPNEATVRALVHG 293



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 42/181 (23%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E     N  +Y I I  +C I ++  ++K       +GI  D + Y++LI   C  N
Sbjct: 524 EMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMN 583

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A +LFD M   G+       NP   DN+                          YS
Sbjct: 584 KVEKAKKLFDSMSRSGL-------NP---DNY-------------------------TYS 608

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I+ L   GR EEA+K    +   G  P     N++I  L ++  + EA  ++ + ++K
Sbjct: 609 AFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQK 668

Query: 175 G 175
           G
Sbjct: 669 G 669



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 47/234 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK+  +D A++       KG   +VF Y+ LI G C  +R+ EA  +F+ M
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 67  VAQGITAELVTYNPLIH-------------------DNWEKQGRFSAMA----------- 96
              G+     T   L+H                   D  ++Q R   M            
Sbjct: 276 KDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLAN 335

Query: 97  ----------LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                     L + L R  Y     V+++V+  L +     E     + L ++G+  G+ 
Sbjct: 336 NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIG 395

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            Y  LI  L K     E D++  Q+   G   +  S+N +I  F      D AS
Sbjct: 396 AYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNAS 449



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           + + L +   +  I  Y  +I+ L +    EE  +   QL   GL+  V +YN++IN  C
Sbjct: 381 VFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFC 440

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  ++  A +    M+ +G  P+  +FNT+I G       D+A   L+ 
Sbjct: 441 RAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLES 489



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 42/149 (28%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+ + K   ID A  K           D F Y++LI+G+C    + EA+ L  +M
Sbjct: 181 LYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQM 240

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                               + +G F                N+  Y+++I+G C   R 
Sbjct: 241 --------------------KDKGHFP---------------NVFTYTMLIEGFCIASRV 265

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +EA    + + + G+ P   T   L++G+
Sbjct: 266 DEAFGVFETMKDSGVYPNEATVRALVHGV 294


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 46/250 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC- 51
           L E R  G   N   + I I+G CK + + +A+K       +G+  +V  Y+SLINGLC 
Sbjct: 224 LKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCN 283

Query: 52  ------------------------TFNRL----------KEAVELFDKMVAQGITAELVT 77
                                   T N L          K+A ELFD M  QGIT  + T
Sbjct: 284 NGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTT 343

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           YN LI    + +    A AL + +       ++  Y+ +I GLCR G  E AR  + ++ 
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMD 403

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K L   ++TYNILI+ LC KG + +A +LL +M  KG  P   ++NT+I G+  K    
Sbjct: 404 TKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGY-CKEGNL 462

Query: 198 RASSFLKKNM 207
           RA+  L+  M
Sbjct: 463 RAALNLRSQM 472



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +Q    N   Y I I+  CK   ++ A       + KG+C DV  Y+ LI GLC   
Sbjct: 331 DMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKG 390

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+ A  L  +M  + + A+L+TYN LI     K     A+ LL  + R   + +   Y+
Sbjct: 391 DLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYN 450

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G    A     Q+ + G +  V TYN+LI G CKK  + +A+ LL +M EK
Sbjct: 451 TMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEK 510

Query: 175 GCFPDSTSFNTVIQGFLVK 193
           G  P+  ++  V +  + K
Sbjct: 511 GLIPNRMTYEIVTEEMMEK 529



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 10/199 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +R +     + I ING+CK+ +++ A         +G+  +V  Y++LI+G C   
Sbjct: 153 EMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMG 212

Query: 55  RLKE---AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           ++ +   A  +  +M A GI    VT+N LI    + +   +AM +   + R   + N+ 
Sbjct: 213 KIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVV 272

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GLC  G+  EA    DQ+    L P ++T+N L+NG CK  M+ +A +L   M
Sbjct: 273 TYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDM 332

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            ++G  P+ T++N +I  +
Sbjct: 333 PKQGITPNVTTYNILIDAY 351



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   +   +NG CK + +       D   K+GI  +V  Y+ LI+  C    +++A 
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L+  M+ +G+  ++ TYN LI     K    +A  L+  ++    + ++  Y+++ID L
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G  ++A + LD++  KGL P  +TYN +I+G CK+G +  A  L  QM++ G   + 
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANV 481

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N +I+GF  K++ + A+  L
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLL 504



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI------DSAIKK----GICLDVFVYSSLINGLC 51
           D+  +    N   Y   I+G CK+ +I      D+ +K+    GIC +   ++ LI+G C
Sbjct: 188 DMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFC 247

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               +  A+++F +M  QG+   +VTYN LI+          A AL   +     + NI 
Sbjct: 248 KDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNII 307

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ +++G C+    ++A +  D + ++G+ P V TYNILI+  CK   + +A  L   M
Sbjct: 308 THNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM 367

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             KG  PD +++N +I G   K + + A + + +
Sbjct: 368 LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSE 401



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 106 YELNIEVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           Y L + V S   ++ GL +VG   +      ++  + + P ++++NI+INGLCK G + +
Sbjct: 122 YGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNK 181

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  ++  MK +G   +  ++NT+I G+
Sbjct: 182 AGDIIEDMKVRGVSANVITYNTLIDGY 208


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  I+G+CK +++       D+ +  G   +  VY +LI+G C   ++  A E+F
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G    + TY  LI D   K GR   AM +L  +  D    N+  Y+ +IDGL +
Sbjct: 667 LRMTKCGYLPSVHTYTSLI-DRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG  E+A   L  + EKG  P VVTY  LI+GL K G    + KL  QM  KGC P+  +
Sbjct: 726 VGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVT 785

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D A   L
Sbjct: 786 YRVLINHCCAAGLLDEAHLLL 806



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G CKI +ID+A        K G    V  Y+SLI+ +    RL  A+++  +M
Sbjct: 645 VYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEM 704

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +       +VTY  +I D   K G    A+ LL  +E      N+  Y+ +IDGL + G+
Sbjct: 705 LNDSCNPNVVTYTAMI-DGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGK 763

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + + K   Q++ KG  P  VTY +LIN  C  G++ EA  LL +MK          ++ 
Sbjct: 764 ADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHC 823

Query: 186 VIQGF 190
            +QGF
Sbjct: 824 AVQGF 828



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 28/218 (12%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-----------------------GICLDVFVYSSLI 47
           N   Y   I+G+CK  EI  A +                         I  +V  Y +LI
Sbjct: 556 NAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALI 615

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKY 106
           +GLC   ++ +A EL D M+A G     + Y+ LI D + K G+  +A  +   + +  Y
Sbjct: 616 DGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALI-DGFCKIGKIDNAQEVFLRMTKCGY 674

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             ++  Y+ +ID + + GR + A K L ++      P VVTY  +I+GL K G I +A  
Sbjct: 675 LPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALN 734

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LL  M+EKGC P+  ++  +I G     +T +A + LK
Sbjct: 735 LLSLMEEKGCSPNVVTYTALIDGL---GKTGKADASLK 769



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 78/156 (50%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   + ++A ++  +M+ +G   +  TY  +I    + +    +  L Q ++R     +
Sbjct: 427 LCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPD 486

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++ID  C+ G  E+AR   D++   G  P VVTY  L++   K   +++A  +  
Sbjct: 487 VYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFH 546

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +M +  C+P++ +++ +I G     E  +A    +K
Sbjct: 547 RMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEK 582



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 43/232 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+ K+ EI+ A+       +KG   +V  Y++LI+GL    +   +++LF
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLF 771

Query: 64  DKMVAQGITAELVTYNPLI--------------------HDNWEK--QGRFSA------- 94
            +M ++G     VTY  LI                    H +W K  QG   A       
Sbjct: 772 KQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKK 831

Query: 95  ----MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA---RKKLDQLSEKGLVPGVVT 147
               + LL+ +E  +      VY ++ID   + GR E A    K+L ++S    +     
Sbjct: 832 FIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGM 891

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y  LI  LC    + EA  L  +M  KG  PD   F ++++G +  N+ D A
Sbjct: 892 YASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEA 943



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK   I+ A          G   +V  Y++L++      +L +A ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-----LLQT---LERDKY--------- 106
            +MV        VTY+ LI D   K G           L+ T   +E D Y         
Sbjct: 546 HRMVDAACYPNAVTYSALI-DGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTI 604

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  +IDGLC+  +  +A + LD +   G  P  + Y+ LI+G CK G I  A +
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQE 664

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + ++M + G  P   ++ ++I         D A   L +
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSE 703



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++L+  L +  +++    +  +M A G   +  T          K GR++    L  L
Sbjct: 206 TYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIG-YFAQALCKVGRWADA--LNML 262

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E++ + L+  + + +I GL     + EA   L ++     +P VVTY  L++G  KK   
Sbjct: 263 EKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQF 322

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
               +++  M  +GC P+ + FN+++ G+   N  D A ++
Sbjct: 323 GWCKRIINMMMTEGCNPNPSLFNSLVHGYC--NAGDYAYAY 361



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 16  GIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           G     +CK+     A+    K+   LD  + + +I+GL   +   EA+    +M     
Sbjct: 243 GYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSC 302

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTY  L+    +K+       ++  +  +    N  +++ ++ G C  G +  A K
Sbjct: 303 IPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYK 362

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
             ++++  G  PG V YNI I  +C +  +  A+ L
Sbjct: 363 LFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELL 398



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+   C      EA+E   ++   G     VTYN L+              + + +    
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASG 234

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           + ++          LC+VGRW +A   L+ L ++      V    +I+GL +  +  EA 
Sbjct: 235 FCMDRSTIGYFAQALCKVGRWADA---LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAM 291

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
             L +M+   C P+  ++ T++ GFL K +
Sbjct: 292 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQ 321



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 46/227 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    N   Y   I+G+ K  + D+++K       KG   +   Y  LIN  C    
Sbjct: 739 MEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGL 798

Query: 56  LKEAVELFDKM--------------VAQGITAELVT-------------------YNPLI 82
           L EA  L D+M                QG + + +                    Y  LI
Sbjct: 799 LDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLI 858

Query: 83  HDNWEKQGRF-SAMALLQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSE 138
            D++ K GR  +A+ L + L      LN+    +Y+ +I  LC   + EEA     +++ 
Sbjct: 859 -DSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTR 917

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPDSTSFN 184
           KG+VP ++ +  L+ GL +     EA +L      +G  + D+ SF+
Sbjct: 918 KGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGVNWQDNKSFD 964



 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A  LL+ +  D  E+   + ++++   CR G W+EA ++L +L + G  P  VTYN L+
Sbjct: 152 TAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALV 211

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L   G +    ++  +M   G   D ++     Q  
Sbjct: 212 QVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQAL 249


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E     +  VY I +NG+ K   +D A K       + I  D+F Y+SL++GL    
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL+EA  +F KM  +G   ++V Y  L+ D   K G+ S A+ + + + + +   ++  Y
Sbjct: 753 RLEEAFNMFTKMTEEGHEPDVVAYTSLM-DVLGKGGKLSHALIIFRAMAKKRCVPDVVTY 811

Query: 114 SLVIDGLCRVGRWEEA-------------------RKKLDQLSEKGLV------------ 142
           S +ID L + GR EEA                      +D   +KG+V            
Sbjct: 812 SSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQR 871

Query: 143 ----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
               P +VTYN L++GL K G +  A+KLL +M++ GC PD  ++N +I G       D 
Sbjct: 872 RQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDE 931

Query: 199 ASSFLKK 205
           A S+ K+
Sbjct: 932 AESYFKR 938



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 31  AIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           A+ K  C+ DV  YSSLI+ L    R++EA   F+  +++G T  +  Y+ LI D++ K+
Sbjct: 798 AMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLI-DSFGKK 856

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A+ L + ++R +   NI  Y+ ++ GL + GR   A K L+++ + G VP +VTY
Sbjct: 857 GMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTY 916

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           NILI+G+ K GM+ EA+    +MKEKG  PD  +F ++I+  
Sbjct: 917 NILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL 958



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ + K  +ID A++         +  D FVY+ ++NGL   NR+ EA +L D M 
Sbjct: 671 YKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK 730

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            Q I  +L TY  L+ D   K GR   A  +   +  + +E ++  Y+ ++D L + G+ 
Sbjct: 731 NQNILPDLFTYTSLL-DGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKL 789

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A      +++K  VP VVTY+ LI+ L K+G + EA         KGC P+   ++++
Sbjct: 790 SHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSL 849

Query: 187 IQGFLVKNETDRA 199
           I  F  K   DRA
Sbjct: 850 IDSFGKKGMVDRA 862



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +++I KG   +V VYSSLI+       +  A+ELF++M  +     +VTYN L+     K
Sbjct: 832 ENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL-SGLAK 890

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR + A  LL+ +E+     ++  Y+++IDG+ ++G  +EA     ++ EKG+VP V+T
Sbjct: 891 AGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVIT 950

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +  LI  L K   ++EA +L   M+E+G  P   ++N +I
Sbjct: 951 FTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLI 990



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 87/159 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++KG   DV  YS +IN LC  + + +A+++F +M  +G+   L  Y  L+    + 
Sbjct: 622 DEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKD 681

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A+ +   L+      +  VY+++++GL +  R +EA K +D +  + ++P + TY
Sbjct: 682 EKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTY 741

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             L++GL K G + EA  +  +M E+G  PD  ++ +++
Sbjct: 742 TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLM 780



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 1/169 (0%)

Query: 32  IKKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           +KK  C+   V Y++L++GL    RL EAV L  +M  QG    +VTY+ L+   +++  
Sbjct: 554 MKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQ 613

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              +++L   + R     ++  YSLVI+ LC+    ++A     ++ E+G+ P +  Y  
Sbjct: 614 EEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT 673

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L++ L K   I  A ++  +++E    PD+  +N ++ G +  N  D A
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEA 722



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVI 117
           AV +F K+    I  +  T+   +H ++ + GR    A  +Q + +   +  +  ++++I
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVH-SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLI 329

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D L + G  +EA K  + +      P VVTY  L+NGL K G + EA ++ V+MKE  C 
Sbjct: 330 DALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCS 389

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD+ ++NT+I G     E D A    K+
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKE 417



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 13  HVYGIRINGMCKIREIDSAIK--KGI-----CLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I+ + K   ID A K   G+       +V  Y++L+NGL    RL+EA E+F +
Sbjct: 323 HTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVE 382

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M     + + + YN LI D   K G    A  L + ++      N+  Y+++I  L + G
Sbjct: 383 MKENNCSPDAIAYNTLI-DGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAG 441

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           R  EA +    L E+G VP V TYN LI+ L K G + +   ++ +M EKG
Sbjct: 442 RQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   IK GI   V  ++ LI+ L     + EA + F+ M     +  +VTY  L+ +   
Sbjct: 310 IQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLV-NGLA 368

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K GR   A  +   ++ +    +   Y+ +IDGL + G  + A     ++ ++GLVP + 
Sbjct: 369 KAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLR 428

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYNI+I+ L K G   EA +L   +KE+G  PD  ++NT+I       + D+  + +K+
Sbjct: 429 TYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKE 487



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 40/229 (17%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+ K  E D A         +G+  ++  Y+ +I+ L    R  EA +LF  +
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL---------ERDK---YELNIE-- 111
             QG   ++ TYN LI D   K G+    +A+++ +          RD    +E  IE  
Sbjct: 454 KEQGAVPDVFTYNTLI-DVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGA 512

Query: 112 -----------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
                             Y+ ++      G  +EA K L+ + +   +P VVTY  L++G
Sbjct: 513 DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDG 572

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L K G + EA  LL +M+++GC P   ++++++  F  +++ + + S  
Sbjct: 573 LGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLF 621



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 31/198 (15%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---------------------I 71
           ++G   DVF Y++LI+ L    ++ + + +  +MV +G                      
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADR 514

Query: 72  TAEL----------VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           T E           +TYN L+           A+ LL+ +++ +    +  Y+ ++DGL 
Sbjct: 515 TVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR +EA   L ++ ++G  P VVTY+ L+    K+    E+  L  +M  KGC  D +
Sbjct: 575 KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVS 634

Query: 182 SFNTVIQGFLVKNETDRA 199
           +++ VI      ++ D+A
Sbjct: 635 TYSLVINCLCKSDDVDQA 652



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 38/237 (16%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEA 59
           R   N   Y   +NG+ K   ++ A      +K+  C  D   Y++LI+GL        A
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMA 411

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF +M  +G+   L TYN +I    +   +  A  L   L+      ++  Y+ +ID 
Sbjct: 412 CGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDV 471

Query: 120 LCRVGRWEEARKKLDQLSEKG------------------------LVP-------GVVTY 148
           L + G+ ++    + ++ EKG                          P       G +TY
Sbjct: 472 LGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITY 531

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N L++     G + EA KLL  MK+  C P   ++ T++ G       D A S L++
Sbjct: 532 NTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            K G   D+  Y+ LI+G+     + EA   F +M  +GI  +++T+  LI    +     
Sbjct: 906  KVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLL 965

Query: 93   SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L  ++E + Y  ++  Y+++ID L R G+  EA     ++  KG +P  +T  I+
Sbjct: 966  EACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 103/181 (56%), Gaps = 2/181 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D   + G   D + Y+ L++G   + +L+ A   F +MV  G+    V+Y  LI D 
Sbjct: 506 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLI-DG 564

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             K G+   A++LL+ +E      N+E Y+ VI+GL +  R+ EA K  D+++E+GL+P 
Sbjct: 565 HSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPN 624

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           V+TY  LI+GLC+ G    A K+   M+++ C P+  +++++I G   + + D A   LK
Sbjct: 625 VITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLK 684

Query: 205 K 205
           +
Sbjct: 685 E 685



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 12/212 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +DL+   F      Y   I G C+ R +D A       +K+G   +   YS+LINGLC  
Sbjct: 269 YDLSPDVF-----TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 323

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+ EA+++ ++M+ +GI   + TY   I      +    A+ L+  +++     N++ Y
Sbjct: 324 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 383

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL R+G+ E A     ++ ++GLVP  VTYN LIN LC  G    A K+   M+ 
Sbjct: 384 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 443

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   ++ ++N +I+G  +  + ++A    +K
Sbjct: 444 HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 475



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G  K  +++SA       ++ G+  +   Y++LI+G     ++  A+ L ++M
Sbjct: 522 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERM 581

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G    + +YN +I +   K+ RFS A  +   +       N+  Y+ +IDGLCR GR
Sbjct: 582 EEMGCNPNVESYNAVI-NGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGR 640

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A K    + ++  +P + TY+ LI GLC++G   EA+ LL +M+ KG  PD  +F +
Sbjct: 641 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 700

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I GF+V    D A   L++
Sbjct: 701 LIDGFVVLGRIDHAFLLLRR 720



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN +C      +A+K        G   +   Y+ +I GLC    +++A+ LF
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 473

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G    +VTYN LI+    K    +A  LL  ++ +  E +   Y+ ++ G  + 
Sbjct: 474 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 533

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E A     ++ E GL P  V+Y  LI+G  K G +  A  LL +M+E GC P+  S+
Sbjct: 534 GKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESY 593

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI G   +N    A     K
Sbjct: 594 NAVINGLSKENRFSEAEKICDK 615



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI   +  +++LIN L    +++EA  +  ++    ++ ++ TY  LI  +   +  
Sbjct: 232 LNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNL 291

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +   + ++  + N   YS +I+GLC  GR +EA   L+++ EKG+ P V TY + 
Sbjct: 292 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLP 351

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I  LC      EA +L+ +MK++GC P+  ++  +I G 
Sbjct: 352 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 390



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 33/229 (14%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNR 55
           + EQ    N   Y   I+G+C+      A K      K  CL +++ YSSLI GLC   +
Sbjct: 616 MAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGK 675

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
             EA  L  +M  +G+  + VT+  LI D +   GR   A  LL+ +     + N   YS
Sbjct: 676 ADEAEILLKEMERKGLAPDEVTFTSLI-DGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYS 734

Query: 115 LVIDGL---C-----RVGRWEEA----------------RKKLDQLSEKGLVPGVVTYNI 150
           +++ GL   C     +V    EA                   L ++SE G  P + TY+ 
Sbjct: 735 VLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYST 794

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L++GLC+KG   EA++L+  MKE+G  PD   + +++       E D A
Sbjct: 795 LVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA 843



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 31/225 (13%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+ K      A K       +G+  +V  Y++LI+GLC   R + A ++F
Sbjct: 589 NVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 648

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +     L TY+ LI+   ++     A  LL+ +ER     +   ++ +IDG   +
Sbjct: 649 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVL 708

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME-------------------- 163
           GR + A   L ++ + G  P   TY++L+ GL K+ +++E                    
Sbjct: 709 GRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDV 768

Query: 164 ----ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                  LL +M E GC P   +++T++ G   K     A   +K
Sbjct: 769 NFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 813



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    ++  ++L+  L  F  ++ A  L+ +M+  GI   L+T+N LI +   K+G+   
Sbjct: 200 GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI-NILSKKGKVRE 258

Query: 95  MALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             L+ + +  +Y+L+ +V  Y+ +I G CR    + A    D++ ++G  P  VTY+ LI
Sbjct: 259 AELILS-QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLI 317

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           NGLC +G + EA  +L +M EKG  P   ++   I   
Sbjct: 318 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 355



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YS+L++GLC   R  EA +L   M  +G   +   Y  L+  + +      A+ +  ++
Sbjct: 791 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSI 850

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E   ++L++ +Y  +I  LC+ G+ EEA+   D + EK      + + +L++GL K+G +
Sbjct: 851 EAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGEL 910

Query: 162 MEADKLLVQMKEKGCFPDSTSF 183
               KLL  M+ K   P+  ++
Sbjct: 911 DLCMKLLHIMESKNFTPNIQTY 932



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 98/262 (37%), Gaps = 66/262 (25%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+ +++   N + Y   I G+C+  + D A        +KG+  D   ++SLI+G     
Sbjct: 650 DMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 709

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI-----------------HD------NWEKQGR 91
           R+  A  L  +MV  G      TY+ L+                 H+        EK   
Sbjct: 710 RIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVN 769

Query: 92  FSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP------- 143
           F  ++ LL  +     E  ++ YS ++ GLCR GR+ EA + +  + E+G  P       
Sbjct: 770 FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 829

Query: 144 ----------------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
                                        +  Y  LI  LCK G + EA  L   M EK 
Sbjct: 830 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889

Query: 176 CFPDSTSFNTVIQGFLVKNETD 197
              D   +  ++ G L + E D
Sbjct: 890 WNADEIVWTVLVDGLLKEGELD 911



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+ F  +  +Y   +   CK  E+D A+K       KG  L + +Y +LI  LC   
Sbjct: 814 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 873

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +++EA  LFD M+ +   A+ + +  L+ D   K+G     M LL  +E   +  NI+ Y
Sbjct: 874 QVEEAQALFDNMLEKEWNADEIVWTVLV-DGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932

Query: 114 SLVIDGLCRVGRWEEARKKLDQL 136
            ++   L R+G+  E+    D+L
Sbjct: 933 VILGRELSRIGKSIESEPLADKL 955


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S + +GI  D   Y+ L+NGL   +++ +A E+F +M  +GI  ++ +Y  LI+  + K 
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN-GFSKL 640

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A ++   +  +    N+ +Y++++ G CR G  E+A++ LD++S KGL P  VTY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             +I+G CK G + EA +L  +MK KG  PDS  + T++ G    N+ +RA +    N
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 7/198 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y + I+G+ K R  D+A       +  GI +  ++Y   I  +     +++A  LFD 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+A G+  +   Y  LI     ++       LL  +++    ++   Y  V+ G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   + ++   G  P VV Y  LI    +     +A ++L +MKE+G  PD   +N+
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       D A SFL
Sbjct: 493 LIIGLSKAKRMDEARSFL 510



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E   KG   N   Y   I+G CK  ++  A +       KG+  D FVY++L++G C 
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-----EKQGRFSAMALLQTLERDKY- 106
            N ++ A+ +F     +G  +    +N LI  NW     + + +   +  L     D++ 
Sbjct: 745 LNDVERAITIFGTN-KKGCASSTAPFNALI--NWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + N   Y+++ID LC+ G  E A++   Q+    L+P V+TY  L+NG  K G   E   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +    G  PD   ++ +I  FL +  T +A
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  + GMC   ++D A       I  G   +V +Y++LI      +R  +A+ +  +
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  QGI  ++  YN LI    + +    A + L  +  +  + N   Y   I G      
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +  A K + ++ E G++P  V    LIN  CKKG ++EA      M ++G   D+ ++  
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G    ++ D A    ++
Sbjct: 598 LMNGLFKNDKVDDAEEIFRE 617



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 9/197 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y   I G C+ + +           K+ I +  + Y +++ G+C+   L  A  +  +
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+A G    +V Y  LI   + +  RF  AM +L+ ++      +I  Y+ +I GL +  
Sbjct: 443 MIASGCRPNVVIYTTLIK-TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +EAR  L ++ E GL P   TY   I+G  +      ADK + +M+E G  P+     
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 185 TVIQGFLVKNETDRASS 201
            +I  +  K +   A S
Sbjct: 562 GLINEYCKKGKVIEACS 578



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 2/194 (1%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           F    + ++G  K++E  S I KG+    + Y  LI+GLC   RL++A  L  +M + G+
Sbjct: 251 FRTATLNVDGALKLKE--SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGV 308

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +  TY+ LI    + +   +A  L+  +      +   +Y   I  + + G  E+A+ 
Sbjct: 309 SLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D +   GL+P    Y  LI G C++  + +  +LLV+MK++       ++ TV++G  
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 192 VKNETDRASSFLKK 205
              + D A + +K+
Sbjct: 429 SSGDLDGAYNIVKE 442



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 50/235 (21%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   YG+ ING  K+  +       D  +++G+  +V +Y+ L+ G C   
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +++A EL D+M  +G+    VTY  +I D + K G  + A  L   ++      +  VY
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTII-DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735

Query: 114 SLVIDGLCRV----------------------------------GRWEEARKKLDQLSEK 139
           + ++DG CR+                                  G+ E   + L++L + 
Sbjct: 736 TTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDG 795

Query: 140 GL----VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                  P  VTYNI+I+ LCK+G +  A +L  QM+     P   ++ +++ G+
Sbjct: 796 SFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y   I G+ K + +D A       ++ G+  + F Y + I+G    +
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
               A +   +M   G+    V    LI++  +K     A +  +++       + + Y+
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GL +  + ++A +   ++  KG+ P V +Y +LING  K G + +A  +  +M E+
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P+   +N ++ GF    E ++A   L
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+G+CKI+ ++ A          G+ LD   YS LI+GL        A  L  +
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ GI  +   Y+  I    ++     A AL   +         + Y+ +I+G CR   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +  + L ++ ++ +V    TY  ++ G+C  G +  A  ++ +M   GC P+   + T
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+ FL  +    A   LK+
Sbjct: 458 LIKTFLQNSRFGDAMRVLKE 477



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 36/196 (18%)

Query: 29  DSAIKKGICLD-VFVYSS---------------LINGLCTFNRLKEAVELFDKMVAQGIT 72
           D  I KG   + VFV+SS               L++ L  +NRL    +++  MV + + 
Sbjct: 159 DGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVV 218

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEA 129
            ++ TY+ LI  +  + G          L +D   K E      +L +DG         A
Sbjct: 219 FDVKTYHMLIIAHC-RAGNVQ-------LGKDVLFKTEKEFRTATLNVDG---------A 261

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K  + +  KGLVP   TY++LI+GLCK   + +A  LLV+M   G   D+ +++ +I G
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 190 FLVKNETDRASSFLKK 205
            L     D A   + +
Sbjct: 322 LLKGRNADAAKGLVHE 337



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 2   DLTEQRF-KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           D +  RF K N   Y I I+ +CK   +++A +         +   V  Y+SL+NG    
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYEL 108
            R  E   +FD+ +A GI  + + Y+ +I+   ++     A+ L+  +       D  +L
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +I     ++ G  +VG  E A K ++ +     +P   T   LIN  C
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM------A 96
           Y+ +I+ LC    L+ A ELF +M    +   ++TY  L++  ++K GR + M      A
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN-GYDKMGRRAEMFPVFDEA 866

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNIL 151
           +   +E D       +YS++I+   + G   +A   +DQ+  K  V       + T   L
Sbjct: 867 IAAGIEPDHI-----MYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           ++G  K G +  A+K++  M      PDS +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 5/202 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---DVFVYSSLINGLCTFNRLKE 58
           ++  ++   +   Y + I+ +CK R I  AI+    +   DV  Y++L+ GLC   R+ +
Sbjct: 60  EMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQ 119

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVI 117
           A  LF  M   GIT   VTY  LI D + K  +F +A  LLQ +   K    +  Y  +I
Sbjct: 120 ACSLFGSMEGAGITPSDVTYTTLI-DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSII 178

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +GLC+  + ++A +  +++   G  P  VTYN LI+GLC K  + EA  LL  M E G  
Sbjct: 179 NGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ 238

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD  +F  +I+G    +    A
Sbjct: 239 PDKITFTALIEGLCTTDRIKEA 260



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 13/207 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
            Q  K N   Y   +  +C+  +ID A        ++ +  DVF Y+ +I+ LC   R+ 
Sbjct: 28  SQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRIS 87

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
            A+E F+ M       ++VTYN L+     K GR + A +L  ++E      +   Y+ +
Sbjct: 88  RAIEFFETMPE----PDVVTYNTLL-GGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTL 142

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ID  C++ ++E A   L  ++ +   P V +Y  +INGLCK   + +A +L  +MK  GC
Sbjct: 143 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 202

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  ++NT+I G  VK     A   L
Sbjct: 203 KPDRVTYNTLIHGLCVKQRLHEAKDLL 229



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 106/268 (39%), Gaps = 75/268 (27%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C  + +  A       ++ G   D   +++LI GLCT +R+KEA  LF  M 
Sbjct: 209 YNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMA 268

Query: 68  AQGITAELVT---------------------------------YNPLIHDNWEKQGRFSA 94
            QG   +LVT                                 Y P+  +   ++G   A
Sbjct: 269 KQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRA 328

Query: 95  MALLQTLERDKYELNIEVYS-----------------------------------LVIDG 119
             LLQ + R     N+  Y+                                   +++DG
Sbjct: 329 ARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDG 388

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+  R + A K +  + + GL P +VTYN L+   C+KG +    +LL  M  +G  PD
Sbjct: 389 FCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPD 448

Query: 180 STSFNTVIQGFLVKNETDRASSFLKKNM 207
             +++T++ G  +  + D A SFL   M
Sbjct: 449 VATWSTLVAGLFMVGQADAAYSFLNLAM 476



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  CK+ + ++A         +     V+ Y S+INGLC   ++ +A +LF++M 
Sbjct: 139 YTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMK 198

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G   + VTYN LIH    KQ    A  LL  +  + ++ +   ++ +I+GLC   R +
Sbjct: 199 LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIK 258

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA      ++++G  P +VT+ +L++ LC    +  A  L V      C      +  + 
Sbjct: 259 EAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPA--LSVVRNYPACPEAVILYTPIF 316

Query: 188 QGFLVKNETDRASSFLKK 205
           +    +   DRA+  L+K
Sbjct: 317 RELGRRRGFDRAARLLQK 334



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L++ L    R ++ V +F ++ +Q      ++Y  L+           A + +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +K   ++  Y++VID LC+  R   A +  + + E    P VVTYN L+ GLCK G + +
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQ 119

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           A  L   M+  G  P   ++ T+I  F    + + A   L+
Sbjct: 120 ACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQ 160



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM   RE    +++GI  D+  Y+ L++G C  +RL  A ++   M   G+   +VTYN 
Sbjct: 360 GMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNT 419

Query: 81  LIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+  +  K G+  A+  LL T+     + ++  +S ++ GL  VG+ + A   L+    +
Sbjct: 420 LVGHHCRK-GKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQ 478

Query: 140 G 140
           G
Sbjct: 479 G 479


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 97/167 (58%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+++I+G C  N+++ A ++ ++M A+G   ++VTYN +I     ++    A+ +L
Sbjct: 146 DVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVL 205

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             L  D     +  Y+++I+     G   EA K L+++  +GL+P + TYN +I G+CK+
Sbjct: 206 DQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 265

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GM+  A +L+  +  KGC PD  S+N +++ FL + + D     + +
Sbjct: 266 GMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAE 312



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I+ +CK   +D AI         G   D+  Y++++  LC    
Sbjct: 348 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 407

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+E+F+K+   G    + +YN +I   W    R  A+ ++  +     + +   Y+ 
Sbjct: 408 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNS 467

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  EEA   LD + + G  P V++YNI++ GLCK   I +A  +  +M EKG
Sbjct: 468 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 527

Query: 176 CFPDSTSFNTVIQGF 190
           C P+ T++  +I+G 
Sbjct: 528 CRPNETTYILLIEGI 542



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            ++ E   + +   Y   I+G CK+ +I++A +       +G   D+  Y+ +I  LC  
Sbjct: 136 MEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 195

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A+ + D+++       ++TY  LI     + G   AM LL+ +       ++  Y
Sbjct: 196 RKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 255

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G+C+ G  E A + +  L+ KG  P V++YNIL+     +G   E +KL+ +M  
Sbjct: 256 NAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 315

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +GC P+  +++ +I         D A S LK
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVLK 346



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 10/183 (5%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----- 82
           ++  + +G+  D++ Y+++I G+C    ++ A EL   + ++G   ++++YN L+     
Sbjct: 240 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLN 299

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
              W++  +  A    +  E +K       YS++I  LCR GR +EA   L  + EK L 
Sbjct: 300 QGKWDEGEKLVAEMFSRGCEPNKV-----TYSILISSLCRFGRIDEAISVLKVMIEKELT 354

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P   +Y+ LI+ LCK+G +  A  ++  M   GC PD  ++NT++         ++A   
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 203 LKK 205
             K
Sbjct: 415 FNK 417



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +C+   ID AI       +K +  D + Y  LI+ LC   RL  A+ + D M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++ G   ++V YN ++    +      A+ +   L       N+  Y+ +I  L   G  
Sbjct: 384 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 443

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A   +  +  KG+ P  +TYN LI+ LC+ G++ EA  LL  M++ G  P   S+N V
Sbjct: 444 SRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 503

Query: 187 IQGFLVKNETDRA 199
           + G       D A
Sbjct: 504 LLGLCKVRRIDDA 516



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   I GMCK          I S   KG   DV  Y+ L+       +  E  +L 
Sbjct: 251 DMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLV 310

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M ++G     VTY+ LI  +  + GR   A+++L+ +   +   +   Y  +I  LC+
Sbjct: 311 AEMFSRGCEPNKVTYSILI-SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR + A   +D +   G +P +V YN ++  LCK G   +A ++  +++  GC P+ +S
Sbjct: 370 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSS 429

Query: 183 FNTVIQGFLVKNETDRA 199
           +NT+I       +  RA
Sbjct: 430 YNTMISALWSCGDRSRA 446



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 36/193 (18%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N  C   +  E++   + +V +G T +++    LI   +  +    A  +++ LE   
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK------- 158
            E ++  Y+ VI G C+V + E A + L+++  +G +P +VTYNI+I  LC +       
Sbjct: 144 -EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 159 ----------------------------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                                       G I EA KLL +M  +G  PD  ++N +I+G 
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 191 LVKNETDRASSFL 203
             +   +RA+  +
Sbjct: 263 CKEGMVERAAELI 275


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + ING+C+   ++E    ++   K+    D   +++LING C      +A+ L 
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MV  G++  +VTY  LI+   +      AM  L  +       N   Y+ +IDG  + 
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++A + + ++ E G  P ++TYN LING C  G + +A  LL +M E+G  PD  S+
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 184 NTVIQGFLVKNETDRA 199
           +T+I GF    E ++A
Sbjct: 452 STIISGFCRNQELEKA 467



 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++++R+  +   +   ING C +     A       +K G+  +V  Y++LIN +C   
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAG 357

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            L  A+E  D+M  +G+     TY  LI D + +QG    A  +++ +  + +   I  Y
Sbjct: 358 NLNRAMEFLDQMRDRGLHPNGRTYTTLI-DGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C +GR E+A   L ++ E+G +P VV+Y+ +I+G C+   + +A +L V+M  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  PD  +++++IQG 
Sbjct: 477 KGISPDVATYSSLIQGL 493



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+  CK+R+I  A K       KG+  ++  Y+ +INGLC   ++KE  E+ 
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +    + VT+N LI+          A+ L   + ++    N+  Y+ +I+ +C+ 
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A + LDQ+ ++GL P   TY  LI+G  ++G + +A +++ +M E G  P   ++
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G  +    + AS  L++
Sbjct: 417 NALINGHCILGRMEDASGLLQE 438



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E     N + Y I I G C    ++  +       + G   +V  Y+++I+  C   
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA +L   M  +G+   L++YN +I+    +        +L+ + + +Y  +   ++
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C VG + +A     ++ + GL P VVTY  LIN +CK G +  A + L QM+++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++ T+I GF
Sbjct: 373 GLHPNGRTYTTLIDGF 388



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ F  +   Y   I+G C+ +E++ A       + KGI  DV  YSSLI GLC   
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL E  +LF +M++ G+  + VTY  LI+    +     A+ L   + +  +  +I  Y+
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+G  +  R +EA++ L +L  +  VP  +TYN LI+               G C KG
Sbjct: 558 VLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKG 617

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EAD++L  M +KG   +   +N +I G       ++A +  K+
Sbjct: 618 LMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKE 663



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 26/230 (11%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E  F      Y   ING C +  ++ A       I++G   DV  YS++I+G C   
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A +L  +MVA+GI+ ++ TY+ LI    +++       L Q +       +   Y+
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+  C  G  ++A +  D++ +KG  P +VTYN+LING  K+    EA +LL+++  +
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 175 GCFPDSTSFNTVI---------------QGFLVK---NETDRA-SSFLKK 205
              P+  ++NT+I               +GF +K   NE DR   S L+K
Sbjct: 583 ESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 17  IRINGMCKIRE--IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           IR     KI E      ++ G+  +V+ Y+ LI G CT   L+  +  F +M   G    
Sbjct: 178 IRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPN 237

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +VTYN +I    + +    A  LL+ +       N+  Y++VI+GLCR G+ +E  + L+
Sbjct: 238 VVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILE 297

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++S++  VP  VT+N LING C  G   +A  L  +M + G  P+  ++ T+I       
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAG 357

Query: 195 ETDRASSFLKK 205
             +RA  FL +
Sbjct: 358 NLNRAMEFLDQ 368



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ +     N   Y   IN MCK   ++ A++       +G+  +   Y++LI+G     
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            LK+A ++  +MV  G T  ++TYN LI+ +        A  LLQ +    +  ++  YS
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G CR    E+A +   ++  KG+ P V TY+ LI GLCK+  + E   L  +M   
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++ ++I  + ++ + D+A
Sbjct: 513 GLPPDEVTYTSLINAYCIEGDLDKA 537



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 14  VYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  C        +R  D  I+KG   D+  Y+ LING    +R KEA  L  K+
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMAL----------------LQTLERDKYELNI 110
           + +      +TYN LI DN       SA+AL                L+++ +  Y+LN 
Sbjct: 580 LYEESVPNEITYNTLI-DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           EVY+++I G  +VG  E+A     ++   G  P  VT   L   L  +G  +E ++LL
Sbjct: 639 EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696



 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 97  LLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L Q L+   Y+   +  V+ LV+    RV    +A   ++     G +PGV++YN +++ 
Sbjct: 117 LFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDA 176

Query: 155 LCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + + K  +  A+ +  +M E G  P+  ++N +I+GF
Sbjct: 177 VIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGF 213


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 15  YGIRINGMCKIREIDSAIK--KGICL--DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y   +NG C+   I+ A +   G+    D F ++ LI  LC   R+ +A+ +FD M+ +G
Sbjct: 222 YNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRG 281

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
            +  +VTY+ L+    ++ G   AMALL  +     E +I  Y+++I+ +C  G  +EA 
Sbjct: 282 CSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEAL 341

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  L   G  P  VTY  ++  LC      E ++LL +M    C PD  +FNT++   
Sbjct: 342 NILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSL 401

Query: 191 LVKNETDRA 199
             +   DRA
Sbjct: 402 CQQGLVDRA 410



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 10/188 (5%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH- 83
           I  +D   + G   D+  YSS+++GLC   R+ +AVEL  ++ + G   + + Y  ++  
Sbjct: 411 IEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 470

Query: 84  ----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
               + WE+     A  L      D+   N      V+  LC+ G  + A + ++Q+SE 
Sbjct: 471 LCSTEQWERAEELMAEMLCSDCPPDEVTFNT-----VVASLCQKGLVDRAIRVVEQMSEN 525

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P +VTYN +I+GLC +  I +A +LL  ++  GC PD  +FNT+++G    +  + A
Sbjct: 526 GCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDA 585

Query: 200 SSFLKKNM 207
              +   M
Sbjct: 586 EQLMANMM 593



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ++  CK       +  +D    KG   D+  Y+ LIN +C    + EA+ +   + 
Sbjct: 289 YSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLP 348

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G   + VTY P++      +       LL  +  +    +   ++ ++  LC+ G  +
Sbjct: 349 SHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVD 408

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + +D +SE G V  +VTY+ +++GLC  G + +A +LL ++K  GC PD+ ++ TV+
Sbjct: 409 RAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 468

Query: 188 QGFLVKNETDRASSFLKK 205
           +G     + +RA   + +
Sbjct: 469 KGLCSTEQWERAEELMAE 486



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 7/197 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G+C +  +D A++        G   D   Y++++ GLC+  + + A EL  +M+
Sbjct: 429 YSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEML 488

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                 + VT+N ++    +K     A+ +++ +  +    +I  Y+ +IDGLC     +
Sbjct: 489 CSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCID 548

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + L  L   G  P +VT+N L+ GLC      +A++L+  M    C PD  +FNTVI
Sbjct: 549 DAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVI 608

Query: 188 QGFLVKNETDRASSFLK 204
                K    +A   LK
Sbjct: 609 TSLCQKGLLTQAIETLK 625



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA---IKKGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C   + + A   + + +C D       +++++  LC    +  A+ + ++M 
Sbjct: 464 YTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMS 523

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G + ++VTYN +I     +     AM LL  L+    + +I  ++ ++ GLC V RWE
Sbjct: 524 ENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWE 583

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + +  +      P  +T+N +I  LC+KG++ +A + L  M E GC P+S++++ V+
Sbjct: 584 DAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVV 643

Query: 188 QGFLVKNETDRASSFL 203
              L   +   A   L
Sbjct: 644 DALLKAGKAQAALELL 659



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C    ID A++        G   D+  +++L+ GLC  +R ++A +L   M+
Sbjct: 534 YNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMM 593

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                 + +T+N +I    +K     A+  L+ +  +    N   YS+V+D L + G+ +
Sbjct: 594 RSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQ 653

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L  ++     P ++TYN +I+ L K G + EA  LL  M   G  PD+T++ ++ 
Sbjct: 654 AALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLA 711

Query: 188 QGFLVKNETDRASSFLKK 205
            G   ++ TDRA   L++
Sbjct: 712 YGVCREDGTDRAVRMLRR 729



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AM 95
           C  V   + LI  LC+  R+ +A  +F    A G +A +VTYN ++ + + + GR   A 
Sbjct: 184 CPPVVPCNILIKRLCSDGRVSDAERVF---AALGPSATVVTYNTMV-NGYCRAGRIEDAR 239

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            L+  +    +  +   ++ +I  LC  GR  +A    D +  +G  P VVTY+IL++  
Sbjct: 240 RLINGM---PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDAT 296

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           CK+    +A  LL +M+ KGC PD  ++N +I     + + D A + L
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNIL 344



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTL 101
           YS +++ L    + + A+EL   M     T +L+TYN +I  N  K G+   A+ LL+ +
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVI-SNLTKAGKMEEALDLLRVM 695

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             +    +   Y  +  G+CR    + A + L ++ + GL P    YN ++ G C+    
Sbjct: 696 VSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRT 755

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             A      M   GC PD +++  +++        D A   L
Sbjct: 756 DLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLL 797


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I+G+ KI  +D A          G+ L+V +YSSLI+G     R+ EA  + +++
Sbjct: 654 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 713

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+T  + T+N L+    + +    A+   Q ++  K   N   YS++I+GLCRV ++
Sbjct: 714 MQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKF 773

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A     ++ ++GL P  +TY  +I GL K G I EA  L  + K  G  PDS S+N +
Sbjct: 774 NKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAI 833

Query: 187 IQGF 190
           I+G 
Sbjct: 834 IEGL 837



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIK-KGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y I I+G+ K        E+  A+K +G  LD   Y++ I+G C   
Sbjct: 572 EIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSG 631

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A +L ++M  +G    +VTY  +I D   K  R   A  L +  + +  ELN+ +Y
Sbjct: 632 KVNKAYQLLEEMKTKGRQPTVVTYGSVI-DGLAKIDRLDEAYMLFEEAKSNGLELNVVIY 690

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   +++L +KGL P V T+N L++ L K   I EA      MK 
Sbjct: 691 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKN 750

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               P+  +++ +I G     + ++A  F ++
Sbjct: 751 LKGTPNHITYSILINGLCRVRKFNKAFVFWQE 782



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 46/239 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+ +CK  E+++A K        G+  +V   + +I+ LC   +L EA  +F
Sbjct: 406 NLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIF 465

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLC 121
           + M  +  + + VT+  LI D   KQGR      L  Q L+ DK   N  VY+ +I    
Sbjct: 466 EGMNHKICSPDEVTFCSLI-DGLGKQGRVDDAYRLYEQMLDSDKIP-NAVVYTSLIKSFF 523

Query: 122 RVGRWEEA-----------------------------------RKKLDQLSEKGLVPGVV 146
           + GR E+                                    R   +++  +G +P V+
Sbjct: 524 KCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVM 583

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +Y+ILI+GL K G   E  +L   MKE+GC  D+ ++NT I GF    + ++A   L++
Sbjct: 584 SYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEE 642



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 45/229 (19%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+   K  ++D A K        G+  D   Y+S+I  LC  NRL EAVE+F++M
Sbjct: 270 LYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM 329

Query: 67  -----------------------------------VAQGITAELVTYNPLIHDNWEKQGR 91
                                               A+G    ++ YN ++     K+GR
Sbjct: 330 EQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCIL-TCLGKKGR 388

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+   + +++D    N+  Y+++ID LC+ G  E A K  D + E GL P V+T NI
Sbjct: 389 LGEALRTFEEMKKDAAP-NLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNI 447

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +I+ LCK   + EA  +   M  K C PD  +F ++I G   +   D A
Sbjct: 448 MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDA 496



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +  VY+SLI       R ++  ++F +M+ +G + +L   N  +   ++        AL 
Sbjct: 511 NAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALF 570

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++   +  ++  YS++I GL + G   E  +    + E+G V     YN  I+G CK 
Sbjct: 571 EEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKS 630

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G + +A +LL +MK KG  P   ++ +VI G    +  D A
Sbjct: 631 GKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEA 671



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L +       + LF +M   G    +  +  +I   + ++GR  +A++LL  
Sbjct: 200 AYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIR-VFAREGRLDAALSLLDE 258

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ +    +I +Y++ ID   + G+ + A K   ++   GL+P  VTY  +I  LCK   
Sbjct: 259 MKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNR 318

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA ++  QM++    P + ++NT+I G+    + D A S L++
Sbjct: 319 LDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLER 363



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I  +  ++E D  +       + G  + V +++++I       RL  A
Sbjct: 193 KFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAA 252

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  + A++V YN  I D + K G+   A      ++      +   Y+ +I 
Sbjct: 253 LSLLDEMKSNCLHADIVLYNVCI-DCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIG 311

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  +Q+ +   VP    YN +I G    G   EA  LL + K +GC P
Sbjct: 312 VLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIP 371

Query: 179 DSTSFNTVI 187
              ++N ++
Sbjct: 372 SVIAYNCIL 380



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I +G   D+ + ++ ++ +       +   LF+++ ++G   ++++Y+ LIH   +    
Sbjct: 539 IHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFA 598

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                L   ++     L+   Y+  IDG C+ G+  +A + L+++  KG  P VVTY  +
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+GL K   + EA  L  + K  G   +   ++++I GF      D A
Sbjct: 659 IDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEA 706


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++  +  K N + +   ING+CKI   + A +  + L        +V  Y+ +I G C  
Sbjct: 280 EMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKE 339

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +L  A  L  +MV QG+     TY  LI  +  K+G F+ A  L+  + R+ ++ NI  
Sbjct: 340 GKLARAEMLLGRMVEQGLAPNTNTYTTLISGHC-KEGSFNCAFELMNKMRREGFQPNIYT 398

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDGLC+ G+ +EA K L   + +GL    VTY ++I   CK+G I  A  L  +M 
Sbjct: 399 YNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMA 458

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E GC PD  ++ T+I  +  + + + +     K
Sbjct: 459 ENGCHPDIHTYTTLIARYCQQRQMEESQKLFDK 491



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 9/208 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   I+G CK    + A        ++G   +++ Y++LI+GLC   +
Sbjct: 352 MVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGK 411

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA ++      QG+  + VTY  +I ++  KQG  + A+ L   +  +    +I  Y+
Sbjct: 412 IQEAYKVLRMANNQGLQLDKVTYTVMITEHC-KQGHITYALDLFNRMAENGCHPDIHTYT 470

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C+  + EE++K  D+     LVP   TY  +I G CK G    A ++  +M + 
Sbjct: 471 TLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQN 530

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
           GC  DS ++  +I G   ++  + A + 
Sbjct: 531 GCQADSITYGALISGLCKESRLEEARAL 558



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 19  INGMCK---IREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C+   + E+D+ +     +G CLD    + ++   C   R ++  ELF +M+  G 
Sbjct: 192 IVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGT 251

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-R 130
              +V Y   I    ++     A  +L+ +     + N+  ++ +I+GLC++G  E A R
Sbjct: 252 PPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFR 311

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
             L  +      P V TY ++I G CK+G +  A+ LL +M E+G  P++ ++ T+I G
Sbjct: 312 LFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISG 370



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 3/175 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G+  D   + +LI G C   R++E   L   M  QG   +  T   ++    +K GRF
Sbjct: 178 RGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQK-GRF 236

Query: 93  SAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             ++ L + +       N+  Y+  IDGLC+    ++A   L+++  KGL P V T+  L
Sbjct: 237 RDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSL 296

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           INGLCK G    A +L +++ +   + P+  ++  +I G+  + +  RA   L +
Sbjct: 297 INGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGR 351



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I   CK   I  A+       + G   D+  Y++LI   C   +++E+ +LFDK 
Sbjct: 433 TYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKC 492

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A  +     TY  +I    +     SA+ + + + ++  + +   Y  +I GLC+  R 
Sbjct: 493 LAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRL 552

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR   + + +K LVP  VT   L    C++   + A  +L ++ ++     + + N +
Sbjct: 553 EEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRR---KNHTVNVL 609

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           ++        + AS FLKK +
Sbjct: 610 VRKLSAIGHVEDASLFLKKAL 630



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 59  AVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLV 116
           A ++FD MV +G +  +  ++  LI     + GR   + ALL  ++   + L+    +++
Sbjct: 168 ARKVFDGMVTRGGLLPDARSFRALI-VGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVI 226

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +   C+ GR+ +  +   ++ E G  P VV Y   I+GLCK+  + +A  +L +M  KG 
Sbjct: 227 VRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGL 286

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            P+  +  ++I G      T+RA
Sbjct: 287 KPNVYTHTSLINGLCKIGWTERA 309



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +E  + V+      G +  ARK  D  ++  GL+P   ++  LI G C+ G + E D LL
Sbjct: 149 VETANWVLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALL 208

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M+ +G   D+ +   +++ F  K      S   ++
Sbjct: 209 TVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRR 245


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 105/189 (55%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++ N + K   +   +++G+  DV+++S+ IN  C   ++++A++LF  M   G++  +V
Sbjct: 223 VKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 282

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           TYN LIH   +      A    + + +D     +  YS++I+GL ++ ++ EA   L + 
Sbjct: 283 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 342

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            EKG  P  V YN LI+G CK G + +A ++   M  KG  P+S + N++IQGF    + 
Sbjct: 343 LEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM 402

Query: 197 DRASSFLKK 205
           ++A   L++
Sbjct: 403 EQAECILEE 411



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +Q  + +   Y + I+GMC+I ++D A+        + +  +V+ Y  +I+G C  +
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++E  +LF +++ Q +    V YN LI           A  L   +           YS
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 670

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C +GR E+A+  +D++ ++GL+P VV Y  LI G CK G + +   +L +M   
Sbjct: 671 SLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSY 730

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P+  ++  +I G+    +   A+  L +
Sbjct: 731 DIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 761



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F+   Q    + +++   IN  CK  +++ AI       K G+  +V  Y++LI+GLC  
Sbjct: 235 FETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH 294

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L EA    +KMV  G+ A L+TY+ LI+   + +    A ++L+      +  N  VY
Sbjct: 295 GNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVY 354

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C++G   +A +    +  KG+ P  VT N +I G CK G + +A+ +L +M  
Sbjct: 355 NTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 414

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G   +  +F T+I    + +  + A  FL++
Sbjct: 415 RGFSINPGAFTTIIHWLCMNSRFESALRFLRE 446



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F L E+ F  N       I+G+CK   +  A++       +G  LD   Y++LI+G C  
Sbjct: 480 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 539

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +++E  +L  +MV QGI  +  TYN LIH          A+ L    +      N+  Y
Sbjct: 540 GKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTY 599

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++IDG C+  + EE  K   +L  + L    V YN LI   C+ G  +EA KL   M+ 
Sbjct: 600 GVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRS 659

Query: 174 KGCFPDSTSFNTVIQG 189
           KG  P + +++++I G
Sbjct: 660 KGIPPTTATYSSLIHG 675



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L  Q  + N  VY   I   C+      A K       KGI      YSSLI+G+C   
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 680

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
           R+++A  L D+M  +G+   +V Y  LI   + K G+   +  +LQ +       N   Y
Sbjct: 681 RMEDAKCLIDEMRKEGLLPNVVCYTALI-GGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 739

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG  + G  + A K L ++  KG+VP  VTYN+L NG CK+G I E  K+   M +
Sbjct: 740 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQ 799

Query: 174 KGCFPDSTSFNTVIQGF 190
           +G   D  ++ T++ G+
Sbjct: 800 EGLPLDEITYTTLVHGW 816



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 42/237 (17%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           E+ F  N  VY   I+G CK+  +  A++       KGI  +    +S+I G C   +++
Sbjct: 344 EKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQME 403

Query: 58  EAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTL----------- 101
           +A  + ++M+++G +     +  +IH       +E   RF    LL+ +           
Sbjct: 404 QAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLV 463

Query: 102 --------ERDKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                     D  EL           N+   + +I GLC+ G  +EA + L ++ E+G V
Sbjct: 464 GGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFV 523

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +TYN LI+G CK+G + E  KL  +M ++G  PD+ ++N +I G     + D A
Sbjct: 524 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEA 580



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 83/147 (56%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+ GLC   +  +AVEL+ +++ +G  A LVT N LIH   +      A+ LL+ +  
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 519

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             + L+   Y+ +I G C+ G+ EE  K   ++ ++G+ P   TYN+LI+G+C+ G + E
Sbjct: 520 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDE 579

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  L  + K +   P+  ++  +I G+
Sbjct: 580 AVNLWNECKSRDLVPNVYTYGVMIDGY 606



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING+ K+ + + A       ++KG   +  VY++LI+G C    L +A+ +   M
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++GI    VT N +I    +      A  +L+ +    + +N   ++ +I  LC   R+
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 437

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L ++  + + P       L+ GLCK+G   +A +L  ++ EKG   +  + N +
Sbjct: 438 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 497

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G         A   LKK
Sbjct: 498 IHGLCKTGNMQEAVRLLKK 516



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 46  LINGLCTFNR---LKEAVELFDKMVAQGI--TAELVTY--NPLIHDNWEKQGRFSAMALL 98
           LI+  CT  R    + A+ +F  +  +G+  T +  T+  + L+  N  ++  +    + 
Sbjct: 180 LIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR 239

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q +  D Y     ++S  I+  C+ G+ E+A +    + + G+ P VVTYN LI+GLCK 
Sbjct: 240 QGVSPDVY-----LFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH 294

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G + EA +   +M + G      +++ +I G +   + + A+S LK+ +
Sbjct: 295 GNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETL 343


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 11/213 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + + + K +  +Y + I  +CKI ++D A       ++ G   D   Y+ L++ L    +
Sbjct: 40  MIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACK 99

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            ++  ++F++M+++G + ELVTY  ++ + + K GR   A++L++ L+      +  +YS
Sbjct: 100 WEQGHQIFEEMLSKGHSPELVTYATVV-NGYCKAGRIDQALSLMRRLKGTGRSPSGSLYS 158

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+  R EEAR+  +  +  G V  V+ Y   I+GLCK G + EA  + V+M E 
Sbjct: 159 TLIDGLCKHDRHEEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEA 216

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           GC PD  S+N +I      N    A   + + M
Sbjct: 217 GCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM 249



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 13/212 (6%)

Query: 6   QRFKG-----NFHVYGIRINGMCKIREIDSA-----IKKGICLDVFVYSSLINGLCTFNR 55
           +R KG     +  +Y   I+G+CK    + A     +  G   DV VY+S I+GLC   +
Sbjct: 143 RRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGK 202

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYS 114
           L EA  +  KM+  G   + V+YN +I+   +      A  L+ Q +ER K    + V +
Sbjct: 203 LDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMER-KCMPGVPVCT 261

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++DGLC+  R EEA   L+++ E G   P VVTY+ +I+GLCK   + +A  +L +M+ 
Sbjct: 262 VLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRR 321

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC PD  ++  +I  F      D A    ++
Sbjct: 322 AGCVPDVVTYTAIIDAFCKVGRLDEARELFQR 353



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G+CK  ++D A       I+ G   D   Y+ +I  LC  NR+ EA EL D+ 
Sbjct: 189 VYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQA 248

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           + +     +     L+ D   K  R   + + L + LE      ++  YS VIDGLC+  
Sbjct: 249 MERKCMPGVPVCTVLV-DGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKAD 307

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R ++A   L ++   G VP VVTY  +I+  CK G + EA +L  +M E+GC  D  ++N
Sbjct: 308 RLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYN 367

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            +I+G+    + D A + +++
Sbjct: 368 ILIRGYCRAAKVDEAIAMIEE 388



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I  +CK   +       D A+++     V V + L++GLC   R++EA  + ++M+
Sbjct: 225 YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERML 284

Query: 68  AQGITA-ELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             G  A  +VTY+ +I D   K  R   A  +LQ + R     ++  Y+ +ID  C+VGR
Sbjct: 285 EAGDRAPSVVTYSAVI-DGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGR 343

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +EAR+   ++ E+G    VV YNILI G C+   + EA  ++ +M  +G
Sbjct: 344 LDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 393



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 73/144 (50%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M A GIT  +VT+  LI    E      A+ +   +   K + +  +Y++VI  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++ + + A    +Q+ + G +P  VTY +L++ L K     +  ++  +M  KG  P+  
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++ TV+ G+      D+A S +++
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRR 144



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKG-ICLDVFVYSSLINGLCTFNRL 56
           E++      V  + ++G+CK R ++ A       ++ G     V  YS++I+GLC  +RL
Sbjct: 250 ERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRL 309

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
            +A  +  KM   G   ++VTY  +I D + K GR   A  L Q +       ++  Y++
Sbjct: 310 DDAYIVLQKMRRAGCVPDVVTYTAII-DAFCKVGRLDEARELFQRMHERGCASDVVAYNI 368

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGL 141
           +I G CR  + +EA   +++++ +G+
Sbjct: 369 LIRGYCRAAKVDEAIAMIEEMAGRGI 394


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 100/203 (49%), Gaps = 7/203 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +VY   I+G CK   +  A+          +  DVF Y+ LINGLCT  RL EA  LF
Sbjct: 372 NLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLF 431

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  + I    VTYN LIH   ++     A+ L   +     E NI  +S +IDG C+V
Sbjct: 432 QRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKV 491

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A     +++ KG+VP VVTY  LI+   K+  + EA +L   M E G  P+  +F
Sbjct: 492 RNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 551

Query: 184 NTVIQGFLVKNETDRASSFLKKN 206
             ++ GF  +     A  F  +N
Sbjct: 552 ACLVDGFWKEGRLSDAIDFYLEN 574



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T    K N ++Y I I  +C+  +++ A K        G+  +++ YS++I+G C   
Sbjct: 258 EMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTG 317

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A  L+ +++   +   +V +  L+    + +   +A +L   + +   + N+ VY+
Sbjct: 318 NLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYN 377

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+ G   EA   L ++    L P V TY ILINGLC +  + EA++L  +MK +
Sbjct: 378 CLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNE 437

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
             FP S ++N++I GF  +   ++A
Sbjct: 438 RIFPSSVTYNSLIHGFCKEYNIEKA 462



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   I+G CK   +  A  + K I +     +V V+ +L++G C    L  A  LF
Sbjct: 302 NLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLF 361

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G+   L  YN LIH   +      AM LL  +E      ++  Y+++I+GLC  
Sbjct: 362 VHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTE 421

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R  EA +   ++  + + P  VTYN LI+G CK+  I +A  L  +M   G  P+  +F
Sbjct: 422 ERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITF 481

Query: 184 NTVIQGF 190
           +T+I G+
Sbjct: 482 STLIDGY 488



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D     G+  +V++Y+  I  LC  N+++EA ++F+ M   G+   L TY+ +I D + 
Sbjct: 256 LDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMI-DGYC 314

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K G    A  L + +   +   N+ V+  ++DG C+      AR     + + G+ P + 
Sbjct: 315 KTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLY 374

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            YN LI+G CK G ++EA  LL +M+     PD  ++  +I G   +     A+   ++
Sbjct: 375 VYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQR 433



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   I+ A+         G+  ++  +S+LI+G C    +K A+ L+ +M
Sbjct: 445 TYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEM 504

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI  ++VTY  LI  ++++     A+ L   +       N   ++ ++DG  + GR 
Sbjct: 505 TIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRL 564

Query: 127 EEARKKLDQLSEKGLVPGVVT--------YNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            +A     + ++      +V         +  LI GLC+ G I+ A +    MK  G  P
Sbjct: 565 SDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTP 624

Query: 179 DSTSFNTVIQGFL 191
           D  S+ ++++  L
Sbjct: 625 DIWSYVSMLKAHL 637



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR--LKEAVELFDKMVAQ 69
           +NG+ + R  DS        I +G+  DV +YS L    C F +    +  +L D+M + 
Sbjct: 205 LNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQ--CCFKQGFPSKKEKLLDEMTSL 262

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+   +  Y   I D   +     A  + + ++      N+  YS +IDG C+ G   +A
Sbjct: 263 GVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQA 322

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++    L+P VV +  L++G CK   ++ A  L V M + G  P+   +N +I G
Sbjct: 323 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHG 382



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           RE+  +     CL      +++NGL    R       +  M+++G+  ++  Y+ L    
Sbjct: 190 REMRCSPDSKACL------AILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCC 243

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +++        LL  +     + N+ +Y++ I  LCR  + EEA K  + +   G+VP +
Sbjct: 244 FKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNL 303

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            TY+ +I+G CK G + +A  L  ++      P+   F T++ GF    E   A S  
Sbjct: 304 YTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLF 361



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 20/222 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T    + N   +   I+G CK+R I +A+        KGI  DV  Y++LI+      
Sbjct: 468 EMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEA 527

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-- 112
            +KEA+ L+  M+  GI     T+  L+   W K+GR S  A+   LE ++      +  
Sbjct: 528 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFW-KEGRLSD-AIDFYLENNQAATGKSIVQ 585

Query: 113 --------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                   ++ +I+GLC+ G    A +    +   G+ P + +Y  ++    ++  I + 
Sbjct: 586 RSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDT 645

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             L   M + G  P+    N ++  F  +N   R++ FL  +
Sbjct: 646 MMLHCDMIKTGILPN-LMVNQLLAMFYQENGYLRSACFLTNS 686


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 7/189 (3%)

Query: 8   FKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +  +Y   I+G+CK    RE    +    K+G+  D F Y++L++G C    L+ A+
Sbjct: 368 LKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELAL 427

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+  +MV +GI  + V +  +I           A   L+ + R   + +   Y++V+DG 
Sbjct: 428 EMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGF 487

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  +   K L ++   G +PGV+TYN+L+NGLCK+G +  AD LL  M   G  PD 
Sbjct: 488 CKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDD 547

Query: 181 TSFNTVIQG 189
            ++N ++QG
Sbjct: 548 ITYNILLQG 556



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 19  INGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK   ++   +  + +       DVF YS+LI+GLC   +L++A  LF +M  +G+
Sbjct: 274 INGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGL 333

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI+    K GR   A+ + Q +     + ++ +Y+ +IDGLC+ G + EAR
Sbjct: 334 VPNDVTFTTLINGQC-KNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREAR 392

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K + +++++GL+P   TY  L++G CK+G +  A ++  +M ++G   D+ +F  +I G 
Sbjct: 393 KFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGL 452



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G   +V+ ++ L+N LC   ++K+A  +FD++   G+    V++N LI+   +    
Sbjct: 224 LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNL 283

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                L   +E  +   ++  YS +IDGLC+  + E+A     ++ ++GLVP  VT+  L
Sbjct: 284 EEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTL 343

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ING CK G +  A ++  QM  KG   D   +NT+I G 
Sbjct: 344 INGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGL 382



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 101/193 (52%), Gaps = 13/193 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G CK  +++ A       +K+GI LD   ++++I+GLC   ++ +A     +M
Sbjct: 409 TYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREM 468

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G+  +  TY  ++ D + K+G       LL+ ++ D +   +  Y+++++GLC+ G+
Sbjct: 469 LRAGLKPDDGTYT-MVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQ 527

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+ +   G+VP  +TYNIL+ G CK G + +   +  +M   G   D  S+ +
Sbjct: 528 VKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRS 584

Query: 186 VIQGFLVKNETDR 198
           ++   L K   DR
Sbjct: 585 LLHE-LSKASKDR 596



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG     FV+ +L++    F  + +A++ F       +         L+    +      
Sbjct: 156 KGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMV 215

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+     +    Y  N+  ++++++ LC+ G+ ++A+   D++ + GL P  V++N LIN
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G CK G + E  +L + M+E   FPD  +++ +I G   + + + A+   K+
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKE 327


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 20/217 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE     N   Y   I+G C++ ++++A       I  G+C +V   ++L++GLC   
Sbjct: 418 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNG 477

Query: 55  RLKEAVELFDKMVAQ-----------GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE 102
           +LK+A+E+F  M              G+  ++ TYN LI      +G+F  A  L + + 
Sbjct: 478 KLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILIC-GLINEGKFLEAEELYEEMP 536

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 +   YS +IDGLC+  R +EA +  D +  K   P VVT+N LI G CK GM+ 
Sbjct: 537 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVD 596

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +L  +M ++G   D+ ++ T+I GF   +  D A
Sbjct: 597 DGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGA 633



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E   + N   YG  ++GMCK+ +  SA+           I  +V +Y+++I+GL    
Sbjct: 208 MLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDG 267

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A  LF +M  + I  ++VTYN +I + +   GR+S A  LLQ +   K   ++  +
Sbjct: 268 RHSDAHNLFIEMQEKEIFPDIVTYNCMI-NGFCISGRWSDAEQLLQEMLERKINPDVVTF 326

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I+   + G++ EA +  D++  + ++P  VTY+ +I+G CK+  +  A+ +      
Sbjct: 327 SALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPT 386

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC PD  +FNT+I G+      D     L +
Sbjct: 387 KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE 418



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
            DL  Q  K N   +   +NG+C+       +  +D  ++ G+  +   Y ++++G+C  
Sbjct: 171 LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230

Query: 54  NRLKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
                A+ L  KM     I   +V YN +I   W K GR S A  L   ++  +   +I 
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLW-KDGRHSDAHNLFIEMQEKEIFPDIV 289

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+G C  GRW +A + L ++ E+ + P VVT++ LIN   K+G   EA++L  +M
Sbjct: 290 TYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEM 349

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +   P + +++++I GF  +N  D A
Sbjct: 350 LPRSIIPSTVTYSSMIDGFCKQNRLDAA 377



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 14/208 (6%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           R   N + + I +   C   ++  A+       K G    V  +++L++GLC  +R+ EA
Sbjct: 111 RMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEA 170

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
           ++LF +M    +    VT+  L+ +   ++GR   A+ALL  +  D  + N   Y  ++D
Sbjct: 171 LDLFHQMCKPNV----VTFTTLM-NGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 225

Query: 119 GLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           G+C++G    A   L ++ E   ++P VV YN +I+GL K G   +A  L ++M+EK  F
Sbjct: 226 GMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIF 285

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  ++N +I GF +      A   L++
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQE 313



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +K I  D+  Y+ +ING C   R  +A +L  +M+ + I  ++VT++ LI + + K+G+F
Sbjct: 281 EKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALI-NAFVKEGKF 339

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L   +       +   YS +IDG C+  R + A         KG  P ++T+N L
Sbjct: 340 FEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I G C+   + +  KLL +M E G   ++ ++ T+I GF    + + A   L++
Sbjct: 400 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQE 453



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + + I      YSS+I+G C  NRL  A  +F     +G + +++T+N LI      
Sbjct: 347 DEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRA 406

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +     + LL  +       N   Y+ +I G C+VG    A+  L ++   G+ P VVT 
Sbjct: 407 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTC 466

Query: 149 NILINGLCKKGMIMEADKLLVQMKEK-----------GCFPDSTSFNTVIQGFL 191
           N L++GLC  G + +A ++   M++            G  PD  ++N +I G +
Sbjct: 467 NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLI 520



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 35/171 (20%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI  D   YSS+I+GLC  +RL EA ++FD M ++  + ++VT+N L            
Sbjct: 538 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTL------------ 585

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                                  I G C+ G  ++  +   ++ ++G+V   +TY  LI 
Sbjct: 586 -----------------------ITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIY 622

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K   I  A  +  +M   G +PD+ +   ++ G   K E +RA + L+
Sbjct: 623 GFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLE 673



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERD 104
           L +G      L +A++LF  MV       ++ +  L+     + GR    ++L + +E  
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLM-GVVVRMGRPDVVISLHKKMEML 110

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           +   N   +++++   C   +   A     ++++ G  P VVT+N L++GLC +  I EA
Sbjct: 111 RMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEA 170

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             L  QM    C P+  +F T++ G   +     A + L +
Sbjct: 171 LDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDR 207


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 105/189 (55%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++ N + K   +   +++G+  DV+++S+ IN  C   ++++A++LF  M   G++  +V
Sbjct: 290 VKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 349

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           TYN LIH   +      A    + + +D     +  YS++I+GL ++ ++ EA   L + 
Sbjct: 350 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 409

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            EKG  P  V YN LI+G CK G + +A ++   M  KG  P+S + N++IQGF    + 
Sbjct: 410 LEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM 469

Query: 197 DRASSFLKK 205
           ++A   L++
Sbjct: 470 EQAECILEE 478



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ +Q  + +   Y + I+GMC+I ++D A+        + +  +V+ Y  +I+G C  +
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++E  +LF +++ Q +    V YN LI           A  L   +           YS
Sbjct: 678 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 737

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C +GR E+A+  +D++ ++GL+P VV Y  LI G CK G + +   +L +M   
Sbjct: 738 SLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSY 797

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P+  ++  +I G+    +   A+  L +
Sbjct: 798 DIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 828



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F+   Q    + +++   IN  CK  +++ AI       K G+  +V  Y++LI+GLC  
Sbjct: 302 FETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH 361

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L EA    +KMV  G+ A L+TY+ LI+   + +    A ++L+      +  N  VY
Sbjct: 362 GNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVY 421

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C++G   +A +    +  KG+ P  VT N +I G CK G + +A+ +L +M  
Sbjct: 422 NTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 481

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G   +  +F T+I    + +  + A  FL++
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFESALRFLRE 513



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
           F L E+ F  N       I+G+CK       +R +   +++G  LD   Y++LI+G C  
Sbjct: 547 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 606

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +++E  +L  +MV QGI  +  TYN LIH          A+ L    +      N+  Y
Sbjct: 607 GKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTY 666

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++IDG C+  + EE  K   +L  + L    V YN LI   C+ G  +EA KL   M+ 
Sbjct: 667 GVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRS 726

Query: 174 KGCFPDSTSFNTVIQG 189
           KG  P + +++++I G
Sbjct: 727 KGIPPTTATYSSLIHG 742



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + YG+ I+G CK  +I+         + + + L+  VY++LI   C      EA +L 
Sbjct: 662 NVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLH 721

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M ++GI     TY+ LIH          A  L+  + ++    N+  Y+ +I G C++
Sbjct: 722 DDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKL 781

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++    L ++S   + P  +TY ++I+G  K G +  A KLL +M  KG  PD+ ++
Sbjct: 782 GQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 841

Query: 184 NTVIQGF 190
           N +  GF
Sbjct: 842 NVLTNGF 848



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  +++         +K+GI  D F Y+ LI+G+C   +L EAV L+++ 
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 654

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            ++ +   + TY  +I D + K  +      L   L     ELN  VY+ +I   CR G 
Sbjct: 655 KSRDLVPNVYTYGVMI-DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN 713

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA K  D +  KG+ P   TY+ LI+G+C  G + +A  L+ +M+++G  P+   +  
Sbjct: 714 TVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTA 773

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+    + D+  + L++
Sbjct: 774 LIGGYCKLGQMDKVVNVLQE 793



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L  Q  + N  VY   I   C+      A K       KGI      YSSLI+G+C   
Sbjct: 688 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 747

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
           R+++A  L D+M  +G+   +V Y  LI   + K G+   +  +LQ +       N   Y
Sbjct: 748 RMEDAKCLIDEMRKEGLLPNVVCYTALI-GGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG  + G  + A K L ++  KG+VP  VTYN+L NG CK+G I E  KLL +   
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKI-EEGKLLAE--- 862

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASS 201
                D   FN+ +  FL+ +E  RA +
Sbjct: 863 -----DGVGFNSPL--FLI-HEAFRACT 882



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 42/237 (17%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           E+ F  N  VY   I+G CK+  +  A++       KGI  +    +S+I G C   +++
Sbjct: 411 EKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQME 470

Query: 58  EAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTL----------- 101
           +A  + ++M+++G +     +  +IH       +E   RF    LL+ +           
Sbjct: 471 QAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLV 530

Query: 102 --------ERDKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                     D  EL           N+   + +I GLC+ G  +EA + L ++ E+G V
Sbjct: 531 GGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFV 590

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +TYN LI+G CK+G + E  KL  +M ++G  PD+ ++N +I G     + D A
Sbjct: 591 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEA 647



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 83/147 (56%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++L+ GLC   +  +AVEL+ +++ +G  A LVT N LIH   +      A+ LL+ +  
Sbjct: 527 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 586

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             + L+   Y+ +I G C+ G+ EE  K   ++ ++G+ P   TYN+LI+G+C+ G + E
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDE 646

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A  L  + K +   P+  ++  +I G+
Sbjct: 647 AVNLWNECKSRDLVPNVYTYGVMIDGY 673



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING+ K+ + + A       ++KG   +  VY++LI+G C    L +A+ +   M
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++GI    VT N +I    +      A  +L+ +    + +N   ++ +I  LC   R+
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 504

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L ++  + + P       L+ GLCK+G   +A +L  ++ EKG   +  + N +
Sbjct: 505 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 564

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G         A   LKK
Sbjct: 565 IHGLCKTGNMQEAVRLLKK 583



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 46  LINGLCTFNR---LKEAVELFDKMVAQGI--TAELVTY--NPLIHDNWEKQGRFSAMALL 98
           LI+  CT  R    + A+ +F  +  +G+  T +  T+  + L+  N  ++  +    + 
Sbjct: 247 LIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR 306

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q +  D Y     ++S  I+  C+ G+ E+A +    + + G+ P VVTYN LI+GLCK 
Sbjct: 307 QGVSPDVY-----LFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH 361

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G + EA +   +M + G      +++ +I G +   + + A+S LK+ +
Sbjct: 362 GNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETL 410


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   +   ING C    +  A+        KG  LD F Y SLINGLC   + ++A+
Sbjct: 121 FQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDAL 180

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L  KM    +   L+TY+ +I    + +    A+ L   +      +++  Y+ +I G 
Sbjct: 181 QLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGC 240

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG+W EA + L  +    + P   T+NIL++ LCK+G I+EA  +   M ++G  PD 
Sbjct: 241 CSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDI 300

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +++GF + N    A     +
Sbjct: 301 VTYNALMEGFCLSNNVSEARELFNR 325



 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING CKI  +D A+        K +  ++  Y+SLI+GLC   R+    EL D+M 
Sbjct: 338 YNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMC 397

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G + ++VTYN  +    + +    A++L + + +  +  +  +Y ++++  C+  + +
Sbjct: 398 DRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWP-DFYMYDVIVENFCKGEKLK 456

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L  L   G  P V TY I+IN LCK     EA  LL +M +  C PD+ +F T+I
Sbjct: 457 IAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETII 516

Query: 188 QGFLVKNETDRA 199
                +NETD+A
Sbjct: 517 GALQERNETDKA 528



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   + N   Y   I+G+CK R I  A++       +GI +DV  Y+SLI+G C+  +
Sbjct: 186 MEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQ 245

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            +EA  L   MV   I  +  T+N L+ D   K+GR   A  +   + +   + +I  Y+
Sbjct: 246 WREATRLLTMMVRGNINPDDYTFNILV-DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYN 304

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C      EAR+  +++ ++GL P V+ YN+LING CK  M+ EA  L  +++ K
Sbjct: 305 ALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCK 364

Query: 175 GCFPDSTSFNTVIQGF 190
              P+  ++N++I G 
Sbjct: 365 NLVPNLATYNSLIDGL 380



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            KGI   +   + LIN  C    L  A  L   ++  G    +VT+N LI+         
Sbjct: 83  SKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVS 142

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AMA    L    Y L+   Y  +I+GLC+ G+  +A + L ++ E  + P ++TY+ +I
Sbjct: 143 KAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVI 202

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           +GLCK  +I +A +L   +  +G   D  ++N++I G
Sbjct: 203 DGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++K     +FV+  L+  +        A+ LF ++ ++GIT  + T   LI+    +   
Sbjct: 47  LRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHL 106

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A +LL T+ +  ++ N+  ++ +I+G C  G   +A      L  KG      +Y  L
Sbjct: 107 SFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSL 166

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           INGLCK G   +A +LL +M+E    P+  +++TVI G 
Sbjct: 167 INGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGL 205



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I V+  ++  + R+G +  A     QL  KG+ P + T  ILIN  C +  +  A  LL 
Sbjct: 55  IFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLG 114

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            + + G  P+  +FNT+I GF +     +A +F
Sbjct: 115 TILKMGFQPNMVTFNTLINGFCINGMVSKAMAF 147



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           F+ + + +  F++M+ +     +  ++ L+          +A++L   L       +I  
Sbjct: 33  FHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIAT 92

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +++I+  C       A   L  + + G  P +VT+N LING C  GM+ +A    + + 
Sbjct: 93  LTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLM 152

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KG   D  S+ ++I G     +T  A   L+K
Sbjct: 153 AKGYPLDEFSYGSLINGLCKNGQTRDALQLLQK 185


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+C+  E+D A++   CL       DV  Y++LI GLC  ++ +EA    
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309

Query: 64  DKMVAQGITAELVTYNPLIH----------------------------------DNWEKQ 89
            KMV +G+  +  TYN LI                                   D    +
Sbjct: 310 GKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHE 369

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G  + A+AL         + N+ +Y+ +I GL   G   EA +  +++SEKGL+P V T+
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NIL+NGLCK G + +AD L+  M  KG FPD  +FN +I G+  + + + A   L
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEIL 484



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 96/173 (55%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  +V  ++ L+NGLC    + +A  L   M+++G   ++ T+N LIH    +    
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ +L  +  +  + ++  Y+ +++GLC+  ++E+  +    + EKG  P + T+NIL+
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LC+   + EA  LL +MK K   PD+ +F T+I GF    + D A +  +K
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IR+   CK     +A++       +G  ++V  Y +++ G    N   E  ELF
Sbjct: 145 DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM+A G++  L T+N L+    +K        LL  + +     N+  Y+L I GLC+ 
Sbjct: 205 GKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + +  L E+G  P V+TYN LI GLCK     EA+  L +M  +G  PDS ++
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324

Query: 184 NTVIQGF 190
           NT+I G+
Sbjct: 325 NTLIAGY 331



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 8/200 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++E+        + I +NG+CK+  +  A       I KG   D+F ++ LI+G  T  
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+E+ D M+  G+  ++ TYN L++   +       M   +T+       N+  ++
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++ LCR  + +EA   L+++  K + P  VT+  LI+G CK G +  A  L  +M+E 
Sbjct: 536 ILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595

Query: 175 GCFPDST-SFNTVIQGFLVK 193
                ST ++N +I  F  K
Sbjct: 596 YKVSSSTPTYNIIIHAFTEK 615



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 92/176 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L +  ++ L+  LC    +KE  +L DK++ +G+   L TYN  I    ++   
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL 267

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ ++  L     + ++  Y+ +I GLC+  +++EA   L ++  +GL P   TYN L
Sbjct: 268 DGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTL 327

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I G CK GM+  A++++      G  PD  ++ ++I G   + ET+RA +   + +
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI  DV+ ++  +   C  +R   A+ L + M +QG    +V Y  ++   +E+  +  
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAE 199

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              L   +      L +  ++ ++  LC+ G  +E  K LD++ ++G++P + TYN+ I 
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC++G +  A +++  + E+G  PD  ++N +I G    ++   A  +L K
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK 311



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 1/196 (0%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H Y  ++     +  +D  +  G+  DV+ Y+SL+NGLC  ++ ++ +E +  MV +G  
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             L T+N L+      +    A+ LL+ ++      +   +  +IDG C+ G  + A   
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588

Query: 133 LDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             ++ E   V     TYNI+I+   +K  +  A+KL  +M ++   PD  ++  ++ GF 
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 192 VKNETDRASSFLKKNM 207
                +    FL + M
Sbjct: 649 KTGNVNLGYKFLLEMM 664



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  IK+G+  ++F Y+  I GLC    L  AV +   ++ QG   +++TYN LI+   +
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK 298

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A   L  +  +  E +   Y+ +I G C+ G  + A + +      G VP   T
Sbjct: 299 NSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFT 358

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y  LI+GLC +G    A  L  +   KG  P+   +NT+I+G 
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL 401



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    N   + I +  +C+ R++D A+        K +  D   + +LI+G C    
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581

Query: 56  LKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           L  A  LF KM  A  +++   TYN +IH   EK     A  L Q +       +   Y 
Sbjct: 582 LDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYR 641

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++DG C+ G      K L ++ E G +P + T   +IN LC +  + EA  ++ +M +K
Sbjct: 642 LMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701

Query: 175 GCFPDSTS 182
           G  P++ +
Sbjct: 702 GLVPEAVN 709



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   +NG+CK  + +       + ++KG   ++F ++ L+  LC + +L EA+ L 
Sbjct: 495 DVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLL 554

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERD-KYELNIEVYSLVIDGLC 121
           ++M  + +  + VT+  LI D + K G    A  L + +E   K   +   Y+++I    
Sbjct: 555 EEMKNKSVNPDAVTFGTLI-DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFT 613

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
                  A K   ++ ++ L P   TY ++++G CK G +    K L++M E G  P  T
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLT 673

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +   VI    V++    A+  + +
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHR 697



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           VF Y+++++ L       +A +++ +M  +GIT ++ ++   +    +     +A+ LL 
Sbjct: 111 VFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLN 170

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +     E+N+  Y  V+ G        E  +   ++   G+   + T+N L+  LCKKG
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKG 230

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + E +KLL ++ ++G  P+  ++N  IQG   + E D A
Sbjct: 231 DVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAM--ALLQTLERDKYELNIEVYS 114
           +A+E+F+ M  + G    L TY  +I +     G+F AM   L+   E     +   VY 
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVI-EKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYV 80

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +    R G+ +EA    +++      P V +YN +++ L   G   +A K+ ++M+++
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  PD  SF   ++ F  K     A+  L  NM
Sbjct: 141 GITPDVYSFTIRMKSF-CKTSRPHAALRLLNNM 172


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 92/165 (55%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D + Y +LINGLC F  + EA EL  +M  +G +  +VTY  +IH   +      AM LL
Sbjct: 219 DSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLL 278

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++    E N+  YS ++DG C+ G    AR  L+ + +K L P +++Y+ L+NGLC +
Sbjct: 279 EDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNE 338

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G I EA ++  +MK +G  PD+  +  ++      +    A++FL
Sbjct: 339 GKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFL 383



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 16/202 (7%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  ING+C+ R I  A +       KG    V  Y+S+I+GLC  N + EA+ L + 
Sbjct: 221 YTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLED 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  + I   + TY+ L+ D + K G  S A  +L+ + + +   N+  YS +++GLC  G
Sbjct: 281 MKDKNIEPNVFTYSSLM-DGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF- 183
           +  EA +  D++  +G  P    Y  ++N LC      EA   L +M   G  P+  ++ 
Sbjct: 340 KINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWS 399

Query: 184 ------NTVIQGFLVKNETDRA 199
                 N VI G    N ++RA
Sbjct: 400 LHVRTHNRVIHGLCTINNSNRA 421



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           Y S++  L   N+LK A   +  M   GI   + + N LI    +  G    AM L +T+
Sbjct: 152 YISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTM 211

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                E +   Y  +I+GLCR     EA++ L ++  KG  P VVTY  +I+GLC+   +
Sbjct: 212 SNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNV 271

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            EA +LL  MK+K   P+  ++++++ GF     + RA   L+
Sbjct: 272 DEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILE 314



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++  + N   Y   ++G CK      A       I+K +  ++  YS+L+NGLC   
Sbjct: 280 DMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEG 339

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDK--YE 107
           ++ EA+E+FD+M  QG   +   Y  +++       +++   F    +L  ++ ++  + 
Sbjct: 340 KINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWS 399

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           L++  ++ VI GLC +     A +    +  +G+   V T+N L+   C K  + +  ++
Sbjct: 400 LHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRI 459

Query: 168 LVQMKEKGCFPDSTSFNTVIQGF 190
           L +M   GC P    ++T++  F
Sbjct: 460 LDEMVINGCIPQGEMWSTMVNCF 482



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 33  KKGICLDVFVYSSLINGLC-TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           K GI   V   + LI   C     + +A+ LF  M   G   +  TY  LI+     +  
Sbjct: 177 KMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSI 236

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  LLQ +E      ++  Y+ +I GLC++   +EA + L+ + +K + P V TY+ L
Sbjct: 237 VEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSL 296

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++G CK G    A  +L  M +K   P+  S++T++ G   + + + A
Sbjct: 297 MDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEA 344


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   D+  ++SL++G C +NR+++A+ LFD++V  G    +VTY  LIH   + +  
Sbjct: 144 MKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHL 203

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ +   +  +    N+  Y+ ++ GLC +GRW +A   L  + ++G+ P V+T+  L
Sbjct: 204 NHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTAL 263

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+   K G IMEA +L   M +   +PD  ++  +I G       D A
Sbjct: 264 IDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEA 311



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   Y   I+ +CK R ++ A++        GI  +V  Y+SL++GLC   R  +A 
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAA 242

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDG 119
            L   M+ +GI   ++T+  LI D + K G+   A  L + + +     ++  Y+ +I+G
Sbjct: 243 WLLRDMMKRGIQPNVITFTALI-DAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALING 301

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GR +EAR+    +   G  P  VTY  LI+G CK   + +  K+  +M +KG   +
Sbjct: 302 LCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVAN 361

Query: 180 STSFNTVIQGFLVKNETDRA 199
           + ++  +IQG+ +    D A
Sbjct: 362 TITYTVLIQGYCLVGRPDVA 381



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CK + ++   K       KG+  +   Y+ LI G C   R   A E+F++M 
Sbjct: 330 YTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMG 389

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++    ++ TYN L+ D     G    A+ + + + + + ++NI  Y+++I G+C+VG+ 
Sbjct: 390 SRRAPPDIRTYNVLL-DGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKV 448

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           E+A      L  KG+ P V+TY  +I+G C++G I EAD L  +MKE G  P+ +
Sbjct: 449 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNES 503



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++  + N   +   I+   K+ +I  A       I+  +  DVF Y++LINGLCT+ 
Sbjct: 247 DMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYG 306

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA ++F  M + G     VTY  LIH   + +       +   + +     N   Y+
Sbjct: 307 RLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYT 366

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVP------------------------------- 143
           ++I G C VGR + A++  +Q+  +   P                               
Sbjct: 367 VLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR 426

Query: 144 ----GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                +VTY I+I G+CK G + +A  L   +  KG  P+  ++ T+I GF  +     A
Sbjct: 427 EMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEA 486

Query: 200 SSFLKK 205
            +  KK
Sbjct: 487 DALFKK 492



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++G+C+I R  D+A      +K+GI  +V  +++LI+      ++ EA E
Sbjct: 219 RPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKE 278

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L+  M+   +  ++ TY  LI +     GR   A  +   +E + Y  N   Y+ +I G 
Sbjct: 279 LYKVMIQMSVYPDVFTYTALI-NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGF 337

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  R E+  K   ++S+KGLV   +TY +LI G C  G    A ++  QM  +   PD 
Sbjct: 338 CKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDI 397

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++N ++ G       ++A    K
Sbjct: 398 RTYNVLLDGLCYNGYVEKALMIFK 421



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD--NWEKQGRF 92
           GI   ++  + ++N +C  ++   A     KM+  G   +LVT+  L+H   +W +    
Sbjct: 112 GISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIE-- 169

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+AL   +    +  N+  Y+ +I  LC+      A +  +Q+ + G+ P VVTYN L+
Sbjct: 170 DALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLV 229

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +GLC+ G   +A  LL  M ++G  P+  +F  +I  F+
Sbjct: 230 SGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFV 268



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L++ +    R    + LF++M   GI+  L T N +++          A   L  + 
Sbjct: 85  FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMM 144

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +E ++  ++ ++ G C   R E+A    DQ+   G  P VVTY  LI+ LCK   + 
Sbjct: 145 KLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLN 204

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            A ++  QM + G  P+  ++N+++ G         A+  L+  M
Sbjct: 205 HAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMM 249



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/117 (19%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  +R   +   Y + ++G+C    ++ A+       K+ + +++  Y+ +I G+C   +
Sbjct: 388 MGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK 447

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           +++A +LF  + ++G+   ++TY  +I     +     A AL + ++ D +  N  V
Sbjct: 448 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T++  + + + Y   + G+C + ++D AIK        G+  ++  Y  ++ G C  N
Sbjct: 525 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKAN 584

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+++   LF++++++ +    + YN +I  + +     +A+ LL+ ++      N   YS
Sbjct: 585 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 644

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---------------------------- 146
            +I G+C +G  E+A+  +D++ ++G VP VV                            
Sbjct: 645 SLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF 704

Query: 147 -------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                  TY ++I+G CK G + +A+ LL++MKE G  PD  ++N +  GF   N+ D A
Sbjct: 705 NIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 764



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 21/203 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L  ++ + N  VY I I   C+   + +A++       KGI  +   YSSLI+G+C   
Sbjct: 595 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 654

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIE 111
            +++A  L D+M  +G    +V Y  LI       G +  +  + T E    E+   NI 
Sbjct: 655 LVEDAKHLIDEMRKEGFVPNVVCYTALI-------GGYCKLGQMDTAESTWLEMISFNIH 707

Query: 112 ----VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+++IDG C++G  E+A   L ++ E G+VP VVTYN+L NG CK   +  A K+
Sbjct: 708 PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKV 767

Query: 168 LVQMKEKGCFPDSTSFNTVIQGF 190
             QM  +G   D  ++ T++ G+
Sbjct: 768 CDQMATEGLPVDEITYTTLVHGW 790



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++ N   K  E+   + +G C DVF ++++IN LC   +++ A+ELF KM   GI+  +V
Sbjct: 197 VKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV 256

Query: 77  TYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TYN +I +   + GR  +A  L + +     + N++ Y  +I+GL ++  +++    LD+
Sbjct: 257 TYNCII-NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDE 315

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +   G  P VV +N LI+G CK G I  A K+   M  K   P S +  +++QGF   ++
Sbjct: 316 MIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 375

Query: 196 TDRASSFLKK 205
            + A + L++
Sbjct: 376 IEHAENALEE 385



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N  V+   I+G CK+  I+ A+K       K I        SL+ G C  ++++ A 
Sbjct: 321 FNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAE 380

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              +++++ G++        ++H   +K    SA    + +    +  +  + ++++ GL
Sbjct: 381 NALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGL 440

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  EA +   +L EKG     VT N LI+GLC  G + EA +++ +M E+G   D 
Sbjct: 441 CKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDR 500

Query: 181 TSFNTVIQGF 190
            ++N +I GF
Sbjct: 501 ITYNALILGF 510



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +T +  + N   YG  ING+ K+         +D  I  G   +V V+++LI+G C    
Sbjct: 281 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGN 340

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++ A+++ D M+++ IT   VT   L+    +      A   L+ +      ++ +    
Sbjct: 341 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 400

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+  LC+  R+  A +    +  +   P  +   +L+ GLCK G  +EA +L  ++ EKG
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 460

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                 + N +I G     +   AS  +K+
Sbjct: 461 SPASKVTSNALIHGLCGAGKLPEASRIVKE 490



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+ GLC   +  EA EL+ +++ +G  A  VT N LIH          A  +++ +    
Sbjct: 436 LVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 495

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
             ++   Y+ +I G C  G+ E   +  ++++++G+ P + TYN L+ GLC  G + +A 
Sbjct: 496 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 555

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           KL  + K  G   +  ++  +++G+   N  +
Sbjct: 556 KLWDEFKASGLISNIHTYGIMMEGYCKANRIE 587


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T++  + + + Y   + G+C + ++D AIK        G+  ++  Y  ++ G C  N
Sbjct: 548 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKAN 607

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+++   LF++++++ +    + YN +I  + +     +A+ LL+ ++      N   YS
Sbjct: 608 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 667

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---------------------------- 146
            +I G+C +G  E+A+  +D++ ++G VP VV                            
Sbjct: 668 SLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF 727

Query: 147 -------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                  TY ++I+G CK G + +A+ LL++MKE G  PD  ++N +  GF   N+ D A
Sbjct: 728 NIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 787



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 21/203 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L  ++ + N  VY I I   C+   + +A++       KGI  +   YSSLI+G+C   
Sbjct: 618 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 677

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIE 111
            +++A  L D+M  +G    +V Y  LI       G +  +  + T E    E+   NI 
Sbjct: 678 LVEDAKHLIDEMRKEGFVPNVVCYTALI-------GGYCKLGQMDTAESTWLEMISFNIH 730

Query: 112 ----VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+++IDG C++G  E+A   L ++ E G+VP VVTYN+L NG CK   +  A K+
Sbjct: 731 PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKV 790

Query: 168 LVQMKEKGCFPDSTSFNTVIQGF 190
             QM  +G   D  ++ T++ G+
Sbjct: 791 CDQMATEGLPVDEITYTTLVHGW 813



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++ N   K  E+   + +G C DVF ++++IN LC   +++ A+ELF KM   GI+  +V
Sbjct: 220 VKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV 279

Query: 77  TYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TYN +I +   + GR  +A  L + +     + N++ Y  +I+GL ++  +++    LD+
Sbjct: 280 TYNCII-NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDE 338

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +   G  P VV +N LI+G CK G I  A K+   M  K   P S +  +++QGF   ++
Sbjct: 339 MIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 398

Query: 196 TDRASSFLKK 205
            + A + L++
Sbjct: 399 IEHAENALEE 408



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N  V+   I+G CK+  I+ A+K       K I        SL+ G C  ++++ A 
Sbjct: 344 FNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAE 403

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              +++++ G++        ++H   +K    SA    + +    +  +  + ++++ GL
Sbjct: 404 NALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGL 463

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+  EA +   +L EKG     VT N LI+GLC  G + EA +++ +M E+G   D 
Sbjct: 464 CKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDR 523

Query: 181 TSFNTVIQGF 190
            ++N +I GF
Sbjct: 524 ITYNALILGF 533



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +T +  + N   YG  ING+ K+         +D  I  G   +V V+++LI+G C    
Sbjct: 304 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGN 363

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++ A+++ D M+++ IT   VT   L+    +      A   L+ +      ++ +    
Sbjct: 364 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 423

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+  LC+  R+  A +    +  +   P  +   +L+ GLCK G  +EA +L  ++ EKG
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 483

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                 + N +I G     +   AS  +K+
Sbjct: 484 SPASKVTSNALIHGLCGAGKLPEASRIVKE 513



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+ GLC   +  EA EL+ +++ +G  A  VT N LIH          A  +++ +    
Sbjct: 459 LVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 518

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
             ++   Y+ +I G C  G+ E   +  ++++++G+ P + TYN L+ GLC  G + +A 
Sbjct: 519 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 578

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           KL  + K  G   +  ++  +++G+   N  +
Sbjct: 579 KLWDEFKASGLISNIHTYGIMMEGYCKANRIE 610


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK  +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC P+  +FN
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+ + I+ ++VTYN LI + + K+G+F  A  L   +       N   YS +IDG C+
Sbjct: 314 QEMLERKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A      ++ KG  P ++T+N LI+G C    I +  +LL +M E G   D+T+
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT+I GF +  + + A   L++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQE 455



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +K    SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  QTLERDKYEL-NIEVYSLVID-----------------------------------GLCR 122
           + +E   + + N+ +YS +ID                                   G C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA++L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           ++++I GF  +N  D A
Sbjct: 363 YSSMIDGFCKQNRLDAA 379



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK   +D+A         KG   ++  +++LI+G C   R+ + +EL 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+ A+  TYN LIH  +      +A+ LLQ +       +I     ++DGLC  
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 124 GRWEEA----------RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A          +K LD      G+ P V TYNILI+GL  +G  +EA++L  +M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ +++++I G   ++  D A+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA++ F +M        +VT+  L+ +   ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLM-NGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C+ G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+K
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     ++++ GL P VVT+  L++GLC +  + EA 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
               QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI G   
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   +D A +       K    +V  +++LING C   R+ + +ELF +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 608 GRRGIVANAITYITLI 623


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK  +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC P+  +FN
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+ + I+ ++VTYN LI + + K+G+F  A  L   +       N   YS +IDG C+
Sbjct: 314 QEMLERKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A      ++ KG  P ++T+N LI+G C    I +  +LL +M E G   D+T+
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT+I GF +  + + A   L++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQE 455



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +K    SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  QTLERDKYEL-NIEVYSLVID-----------------------------------GLCR 122
           + +E   + + N+ +YS +ID                                   G C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA++L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           ++++I GF  +N  D A
Sbjct: 363 YSSMIDGFCKQNRLDAA 379



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK   +D+A         KG   ++  +++LI+G C   R+ + +EL 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+ A+  TYN LIH  +      +A+ LLQ +       +I     ++DGLC  
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 124 GRWEEA----------RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A          +K LD      G+ P V TYNILI+GL  +G  +EA++L  +M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ +++++I G   ++  D A+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ LF +M        +VT+  L+ +   ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLM-NGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C+ G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+K
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     +L++ GL P VVT+N L++GLC +  + EA 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            L  QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI G   
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   +D A +       K    +V  +++LING C   R+ + +ELF +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 608 GRRGIVANAITYITLI 623


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK  +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC P+  +FN
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+ + I+ ++VTYN LI + + K+G+F  A  L   +       N   YS +IDG C+
Sbjct: 314 QEMLERKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A      ++ KG  P ++T+N LI+G C    I +  +LL +M E G   D+T+
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT+I GF +  + + A   L++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQE 455



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +K    SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  QTLERDKYEL-NIEVYSLVID-----------------------------------GLCR 122
           + +E   + + N+ +YS +ID                                   G C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA++L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           ++++I GF  +N  D A
Sbjct: 363 YSSMIDGFCKQNRLDAA 379



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK   +D+A         KG   ++  +++LI+G C   R+ + +EL 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+ A+  TYN LIH  +      +A+ LLQ +       +I     ++DGLC  
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 124 GRWEEA----------RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A          +K LD      G+ P V TYNILI+GL  +G  +EA++L  +M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ +++++I G   ++  D A+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ LF +M        +VT+  L+ +   ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLM-NGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C+ G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+K
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     ++++ GL P VVT+N L++GLC +  + EA 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            L  QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI G   
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   +D A +       K    +V  +++LING C   R+ + +ELF +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 608 GRRGIVANAITYITLI 623


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 17/214 (7%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRL 56
           ++ R   N   Y   I+G CK   I++A        K G+  +V   ++L++G+C   R+
Sbjct: 408 SQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRI 467

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIE 111
             AVE F++M  +G+    VTY  LI      +N EK     AM L   +       +  
Sbjct: 468 NGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEK-----AMELFDEMLEAGCSPDAI 522

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY  +I GL + G+ + A   L ++ E G  P +V++N+LING C+K  + EA ++L +M
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  G  PD  ++NT+I  F    +   A   +KK
Sbjct: 583 ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKK 616



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 13/217 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------KGICL--DVFVYSSLING 49
           ++ E   + N   +GI IN +CK R +D A++           G  +  DV  Y++LI+G
Sbjct: 330 EMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDG 389

Query: 50  LCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           LC   R +E + L ++M +Q       VTYN LI    +     +A  L   + +D    
Sbjct: 390 LCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPP 449

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N+   + ++DG+C+ GR   A +  +++  KGL    VTY  LI   C    I +A +L 
Sbjct: 450 NVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELF 509

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +M E GC PD+  + T+I G     + DRAS  L K
Sbjct: 510 DEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G+ +  ++D A        + G   D+  ++ LING C  N+L EA E+  +M
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              GI  + VTYN LI  ++ K G FS A  L++ + ++     +  Y  +I   C  G 
Sbjct: 583 ENAGIKPDGVTYNTLI-SHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGN 641

Query: 126 WEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            +EA K    +S    VP   V YNILIN LC+K  +  A  L+  MK KG  P++ +FN
Sbjct: 642 LDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFN 701

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            + +G   KN   +A   + +
Sbjct: 702 AMFKGLQEKNWLSKAFELMDR 722



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++GMCK   I+ A++       KG+  +   Y++LI   C  N +++A+ELFD+M+  G 
Sbjct: 458 VDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGC 517

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           + + + Y  LI     + G+   A  +L  ++   +  +I  ++++I+G CR  + +EA 
Sbjct: 518 SPDAIVYYTLI-SGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAY 576

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L ++   G+ P  VTYN LI+   K G    A +L+ +M ++G  P   ++  +I  +
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636

Query: 191 LVKNETDRA 199
            +    D A
Sbjct: 637 CLNGNLDEA 645



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            KGN   Y   I   C +  I+ A       ++ G   D  VY +LI+GL    +L  A 
Sbjct: 482 LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRAS 541

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  KM   G + ++V++N LI+    K     A  +L+ +E    + +   Y+ +I   
Sbjct: 542 FVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHF 601

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G +  A + + ++ ++GLVP VVTY  LI+  C  G + EA K+   M      P +
Sbjct: 602 SKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPN 661

Query: 181 TS-FNTVIQGFLVKNETDRASSFL 203
           T  +N +I     KN+ D A S +
Sbjct: 662 TVIYNILINSLCRKNQVDLALSLM 685



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   + + ING C+  ++D A +        GI  D   Y++LI+       
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYS 114
              A  L  KMV +G+   +VTY  LIH          AM + + +    K   N  +Y+
Sbjct: 607 FSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYN 666

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+ LCR  + + A   +D +  KG+ P   T+N +  GL +K  + +A +L+ +M E 
Sbjct: 667 ILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEH 726

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            C PD  +   + +      ET +  SF++
Sbjct: 727 ACNPDYITMEILTEWLSAVGETAKLKSFVQ 756



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 14/157 (8%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           + LI+ LC   R   A ++   ++  G   E  + N L+       GR      + TL  
Sbjct: 274 TQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALL----TALGRAREFKRMNTLLA 329

Query: 104 DKYELNIE----VYSLVIDGLCRVGRWEEARKKLDQLS---EKGLV--PGVVTYNILING 154
           +  E++I+     + ++I+ LC+  R +EA +  ++++     G +  P V+TYN LI+G
Sbjct: 330 EMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDG 389

Query: 155 LCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF 190
           LCK G   E   L+ +M+ +  C P++ ++N +I G+
Sbjct: 390 LCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            YG  ++GMCK  +  SA+           I  +V +YS++I+ LC   R  +A  LF +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +GI  +L TYN +I   +   GR+S A  LLQ +   K   ++  Y+ +I+   + G
Sbjct: 281 MQEKGIFPDLFTYNSMIV-GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++ EA +  D++  +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC P+  +FN
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 185 TVIQGFLVKNETDRASSFLKK 205
           T+I G+      D     L +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHE 420



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+ +CK  R  D+        +KGI  D+F Y+S+I G C+  R  +A +L 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+ + I+ ++VTYN LI + + K+G+F  A  L   +       N   YS +IDG C+
Sbjct: 314 QEMLERKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R + A      ++ KG  P ++T+N LI+G C    I +  +LL +M E G   D+T+
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +NT+I GF +  + + A   L++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQE 455



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 36/197 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  +++L+NGLC   R+ EAV L D+M+  G+    +TY  ++    +K    SA+ LL
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  QTLERDKYEL-NIEVYSLVID-----------------------------------GLCR 122
           + +E   + + N+ +YS +ID                                   G C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GRW +A + L ++ E+ + P VVTYN LIN   K+G   EA++L  +M  +G  P++ +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 183 FNTVIQGFLVKNETDRA 199
           ++++I GF  +N  D A
Sbjct: 363 YSSMIDGFCKQNRLDAA 379



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK   +D+A         KG   ++  +++LI+G C   R+ + +EL 
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+ A+  TYN LIH  +      +A+ LLQ +       +I     ++DGLC  
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 124 GRWEEA----------RKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           G+ ++A          +K LD      G+ P V TYNILI+GL  +G  +EA++L  +M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            +G  PD+ +++++I G   ++  D A+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++ + + + + I I   C   ++  A+       K G+  DV  +++L++GLC  +R
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA+ LF +M        +VT+  L+ +   ++GR   A+ALL  +  D  +     Y 
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLM-NGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 115 LVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++DG+C+ G    A   L ++ E   ++P VV Y+ +I+ LCK G   +A  L  +M+E
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE 283

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG FPD  ++N++I GF        A   L++
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TY+ +I D   KQ R   
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI-DGLCKQSRLDE 564

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+K
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEK 676



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L +G      L++A++LF  M+       +V +  L+      +     ++L Q +ER +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +I  ++++I   C   +   A     ++++ GL P VVT+  L++GLC +  + EA 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            L  QM E  C P+  +F T++ G   +     A + L + M
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI G   
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M++ G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   +D A +       K    +V  +++LING C   R+ + +ELF +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 608 GRRGIVANAITYITLI 623


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 10/206 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I +  +C   ++D A+       ++G+  D   YS+L++GL   ++L  
Sbjct: 152 RRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDN 211

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVYSLV 116
           A++L D+M   G+ A+ V YN L+   + + G F  AM + + L RD     N+  Y ++
Sbjct: 212 ALDLLDEMPNYGVQADAVCYNALLSGCF-RTGMFEKAMKVWEQLVRDPGASPNLATYKVM 270

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC++GR++EA +   ++         VTY ILI+GLC+ G +  A ++   M + G 
Sbjct: 271 LDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGL 330

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSF 202
             D + +N++I+GF     T  A  F
Sbjct: 331 VLDVSVYNSLIKGFCEVGRTGEAWKF 356



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 7/195 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   IN  CK      A       +K G   +  VY++LING C  +++ +A++++ +M 
Sbjct: 442 YSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMT 501

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G    ++TYN LI    + +    A +L + +    ++ +I  Y+ +I GLCR  + +
Sbjct: 502 SNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVD 561

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  D++ + GL   V+ +NILI+GLC  G + EA  + ++MKEK C P+  ++NT++
Sbjct: 562 VALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLM 621

Query: 188 QGFLVKNETDRASSF 202
            GF      D+A+S 
Sbjct: 622 DGFYEIGSIDKAASL 636



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING C++ +I+ AIK        G C  +  Y++LI+GLC   + +EA  
Sbjct: 471 KPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASS 530

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G   ++ TY  LI      +    A+ +   +     ++++ V++++I GLC
Sbjct: 531 LTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLC 590

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA     ++ EK   P +VTYN L++G  + G I +A  L   + + G  PD  
Sbjct: 591 SAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIV 650

Query: 182 SFNTVIQGFLVKNET 196
           ++NT I+G    N T
Sbjct: 651 TYNTRIKGLCSCNRT 665



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 108/249 (43%), Gaps = 48/249 (19%)

Query: 6   QRFKGNFH-----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            R   N H      YGI I+G+C+  ++DSA       +K G+ LDV VY+SLI G C  
Sbjct: 288 SRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEV 347

Query: 54  NRLKEAVELFDKMVAQGI-----------------------------------TAELVTY 78
            R  EA + +D     GI                                   + + VT+
Sbjct: 348 GRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTF 407

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
             LIH   E      A  +L+       EL++  YS +I+  C+ GR  +A +    + +
Sbjct: 408 GTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVK 467

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            G  P    YN LING C+   I +A K+ ++M   GC P   ++NT+I G L K E  +
Sbjct: 468 DGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDG-LCKAEKYQ 526

Query: 199 ASSFLKKNM 207
            +S L K M
Sbjct: 527 EASSLTKEM 535



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            G   ++  Y  +++GLC   R KEA E++ +M+A    A+ VTY  LIH         S
Sbjct: 258 PGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDS 317

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +   + +    L++ VY+ +I G C VGR  EA K  D     G +  + TYNI+  
Sbjct: 318 AARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSG-IRQITTYNIMTK 376

Query: 154 GLCKKGMIMEADKLLVQMK-EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GL   GM+ EA +LL Q++ +  C PD  +F T+I G       +RA   L+
Sbjct: 377 GLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILE 428



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMAL 97
           D   + +LI+GLC       A E+ +     G   ++ +Y+ +I + + K GR   A  +
Sbjct: 403 DKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMI-NRFCKDGRTHDANEV 461

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + + +D  + N  VY+ +I+G CRV +  +A K   +++  G  P ++TYN LI+GLCK
Sbjct: 462 YKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCK 521

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                EA  L  +M E+G  PD  ++ ++I+G     + D A
Sbjct: 522 AEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVA 563



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+ FK +   Y   I G+C+ +++D A++        G+ +DV V++ LI+GLC+  
Sbjct: 534 EMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAG 593

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA  ++ +M  +  +  LVTYN L+   +E      A +L   +  +  + +I  Y+
Sbjct: 594 KVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYN 653

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             I GLC   R  E    L+++   G++P V+T++IL+  + K G I
Sbjct: 654 TRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPI 700



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNILINGLCKKGMIMEAD 165
           +  ++ ++D   R  R+ +A      LS     + + P + TYNI++  LC +G +  A 
Sbjct: 119 VRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAV 178

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L   ++ +G  PD  +++T++ G    ++ D A   L +
Sbjct: 179 SLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDE 218


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 7/193 (3%)

Query: 19   INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            +NG CK   I  A       I+ G   +V  Y++LI+GLC    L  A EL  +M   G+
Sbjct: 851  MNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 910

Query: 72   TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               + TYN +++   +      A+ L+   E      +   Y+ ++D  C+ G  ++A++
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970

Query: 132  KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             L ++  KGL P +VT+N+L+NG C  GM+ + +KLL  M  KG  P++T+FN +++ + 
Sbjct: 971  ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYC 1030

Query: 192  VKNETDRASSFLK 204
            ++N    A++  K
Sbjct: 1031 IRNNLKAATAIYK 1043



 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING C+  E+D   K       KG+  + + Y S+I  LC   +L EA E F +M+
Sbjct: 707 YSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMI 766

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            QGI  + + Y  L+ D + K+G   A +     +       ++  Y+ +I G C++G  
Sbjct: 767 GQGILPDTIVYTTLV-DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++  +GL P ++T+  L+NG CK G I +A ++   M + GC P+  ++ T+
Sbjct: 826 VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   + + D A+  L +
Sbjct: 886 IDGLCKEGDLDSANELLHE 904



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 105/195 (53%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K N + YG  I  +C+I ++  A       I +GI  D  VY++L++G C    
Sbjct: 730 MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++ A + F +M ++ IT +++TY  +I    +      A  L   +     E +I  ++ 
Sbjct: 790 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++G C+ G  ++A +  + + + G  P VVTY  LI+GLCK+G +  A++LL +M + G
Sbjct: 850 LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 176 CFPDSTSFNTVIQGF 190
             P+  ++N+++ G 
Sbjct: 910 LQPNIFTYNSIVNGL 924



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 44/224 (19%)

Query: 11   NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
            N   Y   I+G+CK  ++DSA        K G+  ++F Y+S++NGLC    ++EAV+L 
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 64   DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +  A G+ A+ VTY  L+ D + K G    A  +L  +     +  I  ++++++G C 
Sbjct: 938  GEFEAAGLNADTVTYTTLM-DAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCL 996

Query: 123  VGRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------ 152
             G  E+  K L+ +  KG+ P   T+N L+                              
Sbjct: 997  HGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKT 1056

Query: 153  -----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
                  G C    + EA  L  +MK KG     ++++ +I+GF 
Sbjct: 1057 YENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFF 1100



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           VY + ++  C  N+   A+ +F +    G+   + +YN +IH   +      A  LL  +
Sbjct: 638 VYLARLSKDC--NKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLM 695

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E   Y  ++  YS VI+G CR G  ++  K ++++ +KGL P   TY  +I  LC+   +
Sbjct: 696 ELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKL 755

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            EA++   +M  +G  PD+  + T++ GF  + +   AS F 
Sbjct: 756 AEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFF 797



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 14   VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   ++  CK  E+D A       + KG+   +  ++ L+NG C    L++  +L + M
Sbjct: 951  TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1010

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +A+GI     T+N L+     +    +A A+ + +     E + + Y  ++ G C     
Sbjct: 1011 LAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNM 1070

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            +EA     ++  KG    V TY++LI G  K+   +EA ++  QM+  G   D   F+
Sbjct: 1071 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           +  E G+   V +YNI+I+ +C+ G I EA  LL+ M+ KG  PD  S++TVI G+    
Sbjct: 659 EFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFG 718

Query: 195 ETDRASSFLKK 205
           E D+    ++K
Sbjct: 719 ELDKVWKLIEK 729



 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query: 15   YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
            Y IR N             +G+  D   Y +L+ G C    +KEA  LF +M  +G +  
Sbjct: 1029 YCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVS 1088

Query: 75   LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            + TY+ LI   ++++    A  +   + RD    + E++    D   +  R +     +D
Sbjct: 1089 VSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPID 1148

Query: 135  QLSEKGLV 142
            ++ E  LV
Sbjct: 1149 EIIENYLV 1156


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 29/232 (12%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E   + N + Y I ++G+C+        R +D  +  G+  D   Y++L++G C+  
Sbjct: 353 EMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKG 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA  + ++M+ +G      T N L++  W++  +  A  +LQ +    Y+L+    +
Sbjct: 413 KVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCN 472

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGL----------------------VPGVVTYNILI 152
           +V++GLCR G  E+A + + ++   G                       VP V+TY  LI
Sbjct: 473 IVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLI 532

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           NGLCK G + EA K  ++M  K   PDS +++T +  F  + +   A   LK
Sbjct: 533 NGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLK 584



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 95/154 (61%), Gaps = 3/154 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           DV  Y++LINGLC   +L+EA + F +M+A+ +  + VTY+  +  N+ KQG+  SA+ +
Sbjct: 524 DVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVL-NFCKQGKISSALRV 582

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ +ER+     ++ Y+ +I GL   G+  E    +D++ E+G+ P + TYN +IN LC+
Sbjct: 583 LKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCE 642

Query: 158 KGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGF 190
            G   +A  LL +M +KG   P+ +SF  +I+ F
Sbjct: 643 GGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAF 676



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 114/218 (52%), Gaps = 13/218 (5%)

Query: 1   FDLTEQRFKGNFH--VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC 51
            +  + +  GN +  VY   ++  CK    D A K       KG+  DV  ++S I+ LC
Sbjct: 206 LEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALC 265

Query: 52  TFNRLKEAVELFDKMVAQG----ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
              ++ EA  +F  M   G        +VT+N ++    ++     A +L++T+++    
Sbjct: 266 RAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNF 325

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           +++E Y+  + GL R G+  E R  LD++ E G+ P + +YNI+++GLC+  M+++A +L
Sbjct: 326 VSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRL 385

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  M   G +PD+ ++ T++ G+  K +   A + L +
Sbjct: 386 MDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNE 423



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI--DSAIKKGICLD---------VFVYSSLINGLC 51
           +TE+    +   +  RI+ +C+  ++   S I + + +D         V  ++ ++ G C
Sbjct: 245 MTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFC 304

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               ++EA  L + M   G    L +YN  +             ++L  +  +  E NI 
Sbjct: 305 QEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIY 364

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y++V+DGLCR     +AR+ +D +   G+ P  VTY  L++G C KG + EA  +L +M
Sbjct: 365 SYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEM 424

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             KGC P++ + NT++     +     A   L+K
Sbjct: 425 IRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQK 458



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 6/177 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I+ G+  + + ++ LI  LC  N L  A ELFDKM  +G      T   L+   + + GR
Sbjct: 143 IQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVR-GFCRAGR 201

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +  AL     +    +N  VY+ ++   C+    +EA K +++++EKGL+P VVT+N  
Sbjct: 202 -TKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSR 260

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCF----PDSTSFNTVIQGFLVKNETDRASSFLK 204
           I+ LC+ G + EA ++   M+  G      P+  +FN +++GF  +   + A S ++
Sbjct: 261 ISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVE 317



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 82/148 (55%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++ GI  +++ Y+ +++GLC  + + +A  L D MV+ G+  + VTY  L+H    
Sbjct: 351 LDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCS 410

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K   F A A+L  + R     N    + +++ L + GR  EA + L +++EK      VT
Sbjct: 411 KGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVT 470

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKG 175
            NI++NGLC+ G + +A +++ +M   G
Sbjct: 471 CNIVVNGLCRNGELEKASEVVSEMWTDG 498



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +K   LD    + ++NGLC    L++A E+  +M   G T  L   NP+        G  
Sbjct: 461 EKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDG-TNSLGKENPV-------AGLV 512

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +++  + T   D     +  Y+ +I+GLC+VG+ EEA+KK  ++  K L P  VTY+  +
Sbjct: 513 NSIHNVSTNVPD-----VITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFV 567

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
              CK+G I  A ++L  M+  GC     ++N++I G   K +
Sbjct: 568 LNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQ 610



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           NR      L+  M+  G+  E  T+N LI    E      A  L   +     + N    
Sbjct: 130 NRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTV 189

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +++ G CR GR ++A + +D   + G     V YN L++  CK+ M  EA+KL+ +M E
Sbjct: 190 GILVRGFCRAGRTKQALEFVD--GKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTE 247

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           KG  PD  +FN+ I       +   AS   +
Sbjct: 248 KGLLPDVVTFNSRISALCRAGKVFEASRIFR 278



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK+ +++ A KK I +       D   Y + +   C   ++  A+ +   M
Sbjct: 527 TYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDM 586

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G +  L TYN LI     K   F    L+  +       +I  Y+ +I+ LC  G+ 
Sbjct: 587 ERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKT 646

Query: 127 EEARKKLDQLSEKGLV-PGVVTYNILINGLCKKG 159
           ++A   L ++ +KG+V P V ++ ILI   CK G
Sbjct: 647 KDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSG 680



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           F +YG+          +D   ++GI  D+  Y+++IN LC   + K+A  L  +M+ +G+
Sbjct: 612 FEMYGL----------MDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGV 661

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            +  V+   ++   + K G F     L  +          +YSL+ + L   G+  +A++
Sbjct: 662 VSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFNELLAGGKLSDAKE 721

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF 190
             +   E+ L+     Y  LI+ LCK G + +A  LL ++ +KG CF D +SF  VI G 
Sbjct: 722 LFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCF-DHSSFIPVIDGL 780

Query: 191 LVKNETDRA 199
             +    +A
Sbjct: 781 SKRGNKQQA 789



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           + G+ P   T+N+LI  LC+   +  A +L  +M EKGC P+  +   +++GF     T 
Sbjct: 144 QTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTK 203

Query: 198 RASSFLKKNM 207
           +A  F+   M
Sbjct: 204 QALEFVDGKM 213


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   ING  K  +I  A +       + I L+ F Y +LI+GLC    L++A 
Sbjct: 333 LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAE 392

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF +M   GI  ++ TYN LI   ++ Q    A  LL  ++++    N  +   +++GL
Sbjct: 393 DLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGL 452

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G    A +   ++   GL P +V Y  ++ GL K+G   EA K+L  MK++G  PD 
Sbjct: 453 CHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDV 512

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
             +NTVI GF    + +   S+L
Sbjct: 513 FCYNTVIIGFCKAGKMEEGKSYL 535



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T    K +   Y   I G  K++ ++ A        K+ +  + ++  +++NGLC   
Sbjct: 397 EMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCG 456

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L  A ELF +M++ G+   +V Y  ++     K+GRF  A+ +L  ++      ++  Y
Sbjct: 457 DLTRANELFQEMISWGLKPNIVIYTTIVK-GLVKEGRFEEAIKILGVMKDQGLSPDVFCY 515

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI G C+ G+ EE +  L ++  KGL P V TY   I+G C+ G +  A++  ++M +
Sbjct: 516 NTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLD 575

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  P+      +I G+     T +A
Sbjct: 576 SGIAPNDVICTDLIDGYCKDGNTTKA 601



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 9/193 (4%)

Query: 19  INGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK      A  K       G+  DV  +S LI+GL    +L+EA+ +F +++ +G+
Sbjct: 589 IDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGL 648

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             ++ TY  LI  N  K+G   +A  L   + +     NI  Y+ +I+GLC++G   +AR
Sbjct: 649 VPDVFTYTSLI-SNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  D + EKGL    VTY+ +I G CK   + EA +L   MK  G  PDS  +  +I G 
Sbjct: 708 ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGC 767

Query: 191 LVKNETDRASSFL 203
                T++A S  
Sbjct: 768 CKAGNTEKALSLF 780



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           FD+ E+    N   Y + I G+C+  ++D A++       KG+  D ++Y++LI+G C  
Sbjct: 256 FDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQ 315

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R  E   + D+M   G+  + V Y  LI+   ++     A  + + +   K +LN   Y
Sbjct: 316 KRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTY 375

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I GLC++G  E+A     +++  G+ P + TYN LI G  K   + +A +LL+++K+
Sbjct: 376 YALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKK 435

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +    ++     ++ G     +  RA+   ++
Sbjct: 436 ENLTANAYMCGAIVNGLCHCGDLTRANELFQE 467



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 8/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    N   Y   ING+CK+ EI       D   +KG+  +   YS++I G C   
Sbjct: 677 DMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSA 736

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA +LF  M   G+  +   Y  LI    +      A++L   +  +    +   ++
Sbjct: 737 NLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFN 795

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG  ++G+  EA + ++ + +  + P  VTY ILI   C  G I EA++L ++M+++
Sbjct: 796 ALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKR 855

Query: 175 GCFPDSTSFNTVIQGF 190
              P+  ++ +++ G+
Sbjct: 856 NVMPNVLTYTSLLHGY 871



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 23/209 (11%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  +Y   + G+ K    + AIK       +G+  DVF Y+++I G C   +++E  
Sbjct: 473 LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGK 532

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-------NIEVY 113
               +M+A+G+   + TY   IH        +     +Q  ER   E+       N  + 
Sbjct: 533 SYLVEMIAKGLKPNVYTYGAFIHG-------YCRAGEMQAAERSFIEMLDSGIAPNDVIC 585

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C+ G   +A  K   + ++G++P V T+++LI+GL K G + EA  +  ++ +
Sbjct: 586 TDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLD 645

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           KG  PD  ++ ++I       E D  ++F
Sbjct: 646 KGLVPDVFTYTSLISNLC--KEGDLKAAF 672



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD + E+    N   Y   I G CK   +  A +        G+  D FVY +LI+G C 
Sbjct: 710 FDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCK 769

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
               ++A+ LF  MV +GI A    +N LI D + K G+   A  L++ +  +    N  
Sbjct: 770 AGNTEKALSLFLGMVEEGI-ASTPAFNALI-DGFFKLGKLIEAYQLVEDMVDNHITPNHV 827

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++I+  C VG  +EA +   ++ ++ ++P V+TY  L++G  + G   E   L  +M
Sbjct: 828 TYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEM 887

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
             +G  PD  +++ ++   L
Sbjct: 888 VARGIKPDDLAWSVMVDAHL 907



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  Y+ +I+  CRVG+ EE +  L  + EKG +P +VTY+++I GLC+ G + EA +L 
Sbjct: 231 DVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELK 290

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             M  KG  PD+  + T+I GF  +  +    S L
Sbjct: 291 RSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSML 325



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 35/204 (17%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
            I  DV+ Y++LIN  C   +++E   +   M  +G    LVTY+ +I           A
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN- 153
           + L +++       +  +Y+ +IDG CR  R  E +  LD++   GL P  V Y  LIN 
Sbjct: 287 LELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALING 346

Query: 154 ----------------------------------GLCKKGMIMEADKLLVQMKEKGCFPD 179
                                             GLCK G + +A+ L  +M   G  PD
Sbjct: 347 FVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             ++N +I+G+      ++A   L
Sbjct: 407 IQTYNCLIEGYYKVQNMEKAYELL 430



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 7/177 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ +     N   Y I I   C +  I  A        K+ +  +V  Y+SL++G     
Sbjct: 816 DMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIG 875

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  E   LFD+MVA+GI  + + ++ ++  + ++     A+ L+  +  +   +   +Y+
Sbjct: 876 RRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYT 935

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           ++ID LC+     E  K LD++ ++G    + T   L+    + G   EA ++L  M
Sbjct: 936 ILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 2/173 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  +   I  +   Y+ LI   CT   +KEA +LF +M  + +   ++TY  L+H  + 
Sbjct: 814 VEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLH-GYN 872

Query: 88  KQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + GR S M +L   +     + +   +S+++D   + G W +A K +D +  +G+     
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            Y ILI+ LCK   + E  K+L +++++G      +  T++  F     TD A
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEA 985



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G CK    + A       +++GI      +++LI+G     +L EA +L + M
Sbjct: 759 VYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGKLIEAYQLVEDM 817

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V   IT   VTY  LI  +        A  L   +++     N+  Y+ ++ G  R+GR 
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRR 877

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            E     D++  +G+ P  + ++++++   K+G  ++A KL+  M  +G
Sbjct: 878 SEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG 926



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +VP V TY  LIN  C+ G + E   +L  M+EKGC P+  +++ VI G     + D A
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286

Query: 200 SSFLKKNM 207
              LK++M
Sbjct: 287 LE-LKRSM 293


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 39/202 (19%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDS----AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           +RF+ +  +Y   I+G CK  ++D+    A+     LDV  Y+++I GL    R+ EA E
Sbjct: 70  KRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACE 129

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF+++   G +                                    N+  Y+ VIDGL 
Sbjct: 130 LFEELKTAGCSP-----------------------------------NVVAYTAVIDGLL 154

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR E+  K  +++S    VP   TY ++I+GLCK  M+ +A K+  QM +KGC PD+ 
Sbjct: 155 KAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTI 214

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           ++ T+I GF   ++ D A   L
Sbjct: 215 TYTTLIDGFSKASKMDEARKLL 236



 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  I    KI  +++A        K G+  D F Y+SL++G     R+ +A  ++D+M
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
           VA GI    VT+N L+H  ++      A +L  + LE+++    +  Y+++IDGL + GR
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA  +  ++ ++G++P   TY  LI  L K G I EA KL+  M + G  PD  +++ 
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I G +  +  D A    ++ M
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMM 556



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK + +  A       ++KG   D   Y++LI+G    +++ EA +L D M
Sbjct: 180 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM 239

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G     VTY  ++H   +      A  ++  +     E  + +++ ++      GR 
Sbjct: 240 LTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRA 299

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA + L +++ +G  P V+ Y  LI+ L   G + EA  +   M EKGC PD+ ++ T+
Sbjct: 300 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 359

Query: 187 IQGF 190
           IQ F
Sbjct: 360 IQNF 363



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           K N   + + ++G+ K  + D A         K+ +   +  Y+ LI+GL    R+ EA 
Sbjct: 420 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAF 479

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
             F +M+ +GI  E  TY  LI+ +  K GR   A  L++ + +     +++ YS +I G
Sbjct: 480 LQFQEMIDRGIIPECHTYTSLIY-SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 538

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           L      + A     ++ ++G  P  VTY +L  G    G  ++
Sbjct: 539 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 582



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E  I  Y+ VI GL  + + +EA K  + + + G  P V+ +  LI+G CK G      K
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHK 63

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           LL Q  ++   PD   + +VI G+    + D
Sbjct: 64  LLNQALKR-FRPDVFLYTSVIHGYCKAGDLD 93



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G  P +V+YN +I+GL     + EA K    M + GC PD  +F T+I GF
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGF 52


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H++ I  +   K   ID A+       ++G+  D   Y +LI+ LC   R+ +A   F
Sbjct: 377 NHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKF 436

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T ++V ++ L++     D WEK        L   +       NI  ++ ++ 
Sbjct: 437 NQMINEGVTPDIVVFSSLVYGLCTVDKWEK-----VEELFFEMLNVGIHPNIVFFNTILC 491

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  E ++ +D +   G+ P V++YN LI+G C  G I EA KLL  M   G  P
Sbjct: 492 NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKP 551

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           DS S+NT++ G+      D A S  +K
Sbjct: 552 DSFSYNTLLHGYCKAGRIDSAYSHFRK 578



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  I+ +CK+  +D A       I +G+  D+ V+SSL+ GLCT ++ ++  ELF +M+
Sbjct: 416 YGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEML 475

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI   +V +N ++  N  K+GR      L+ ++E      ++  Y+ +IDG C  G  
Sbjct: 476 NVGIHPNIVFFNTILC-NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 534

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K L+ +   GL P   +YN L++G CK G I  A     +M   G  P   ++NT+
Sbjct: 535 DEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTI 594

Query: 187 IQGFL 191
           + G  
Sbjct: 595 LHGLF 599



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK   IDSA       +  GI   V  Y+++++GL    R  EA EL+  M+
Sbjct: 556 YNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 615

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G   ++ TYN +++   +      A+ + Q L     +LNI  ++++I  L + GR E
Sbjct: 616 NSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKE 675

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A      +   GLV  VVTY +++  L ++G + E D L   M++ G  P+S   N ++
Sbjct: 676 DAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 735

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L + +  RA ++L K
Sbjct: 736 RRLLHRGDISRAGAYLSK 753



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 7/189 (3%)

Query: 24  KIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           K R ID A       + KG+  DV  Y+++++GL    R  EA EL+  M+       + 
Sbjct: 803 KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           TYN +++   +      A  + Q+L     +LNI  ++++I  L + GR E+A      +
Sbjct: 863 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 922

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
              GLVP VVTY ++   L ++G + E D L + M++ G   DS   N +++  L + + 
Sbjct: 923 PANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDI 982

Query: 197 DRASSFLKK 205
            RA ++L K
Sbjct: 983 SRAGAYLSK 991



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 15  YGIRINGMCKIREIDSAIKK----------GICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           Y I + G+C  +  + A++               +V  YS++ING  T  ++ +   LF 
Sbjct: 168 YNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFL 227

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M+ +GI  ++VTY  +I    + Q    A A+ Q +  +  + NI+ Y+ +I G   +G
Sbjct: 228 EMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIG 287

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +W+E  + L+++S  G  P   TY  L+N LCK G   EA      M  KG  P  T++ 
Sbjct: 288 KWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYG 347

Query: 185 TVIQGFLVK 193
            ++ G+  K
Sbjct: 348 IMLHGYATK 356



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING     ++D         + +GI  DV  Y+++I+GLC       A  +F
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVF 261

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+  G+   + TYN LIH           + +L+ +     + N   Y  +++ LC+ 
Sbjct: 262 QQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKN 321

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  EAR   D +  KG+ P V TY I+++G   KG + E   LL  M   G  P+   F
Sbjct: 322 GRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIF 381

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N     +      D+A     K
Sbjct: 382 NIFFSAYAKCGIIDKAMDIFNK 403



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDK 65
            Y I I   C++  ++         +K G  +D  V + L+NGLC   R+ EA++ L  +
Sbjct: 96  TYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQR 155

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---ELNIEVYSLVIDGLCR 122
           M   G   + V+YN L+     ++    A+ LL  +  D+      N+  YS VI+G   
Sbjct: 156 MPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFT 215

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++      ++ ++G+ P VVTY  +I+GLCK  +   A+ +  QM + G  P+  +
Sbjct: 216 EGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDT 275

Query: 183 FNTVIQGFL 191
           +N +I G+L
Sbjct: 276 YNCLIHGYL 284



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 9   KGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G   I       R ++     G   +   Y SL+N LC   R +EA  
Sbjct: 270 KPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARF 329

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGL 120
            FD M+ +GI   + TY  ++H  +  +G  S M  LL  +  +    N  ++++     
Sbjct: 330 FFDSMIGKGIKPSVTTYGIMLH-GYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAY 388

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A    +++ ++GL P  V+Y  LI+ LCK G + +A+    QM  +G  PD 
Sbjct: 389 AKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDI 448

Query: 181 TSFNTVIQGF 190
             F++++ G 
Sbjct: 449 VVFSSLVYGL 458



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-------MALLQTLERDKY-- 106
           L +A++LFD+++     A +V +N L+       GR S        ++L   + RD Y  
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 107 -ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA- 164
              N   YS++I   CR+G  E        + + G     +  N L+NGLC    + EA 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           D LL +M E GC PD+ S+N +++G   +   + A   L
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELL 188



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 37/219 (16%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + + Y I +NG+CK   +D AIK       KG+ L++  ++ +I  L    R ++A++
Sbjct: 620 KWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 679

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGL 120
           LF  + A G+   +VTY  L+ +N  ++G      +L   +E++    N ++ + ++  L
Sbjct: 680 LFAAIPANGLVQNVVTYR-LVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 738

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN------------GLCKKGMIM------ 162
              G    A   L +L E+       T ++LI+             L KK  I+      
Sbjct: 739 LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSS 798

Query: 163 ----------EADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
                     +A  L  +M  KG  PD  ++NT++ G  
Sbjct: 799 ALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLF 837



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 1    FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
              +   R + N + Y I +NG+CK   +D A K       KG+ L++  ++ +I  L   
Sbjct: 850  LSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKG 909

Query: 54   NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEV 112
             R ++A++LF  + A G+  ++VTY  L+ +N  ++G       L  T+E+    L+  +
Sbjct: 910  GRKEDAMDLFAAIPANGLVPDVVTYR-LVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRL 968

Query: 113  YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
             + ++  L + G    A   L +L EK       T + LI+
Sbjct: 969  LNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELIS 1009


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 10/210 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           LT+ + +G  H   ++   I+G C+   +D A+       + GI LDV+ Y++L  GLC 
Sbjct: 296 LTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCR 355

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            NR+++A +L   M   G+ +  V+Y  LI  + ++     A  L + +E      ++  
Sbjct: 356 VNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVT 415

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG  + G   EA +   ++ +KGLVP V TY  L++G C  G +  A +L  +MK
Sbjct: 416 YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 475

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           ++G  P+  ++  +I G   +  ++ A  F
Sbjct: 476 QRGAKPNVVAYTALISGLAKEGRSEEAFQF 505



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  +   G+ + Y   IN  C+   +       D  +  GI  +   Y +LING C   
Sbjct: 228 EIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIG 287

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +++ A  L   M  +G+    + +N +I D + + G    A+ +   +ER   +L++  Y
Sbjct: 288 QIEAAEMLLTDMQLRGVGHNQIIFNTMI-DGYCRHGMVDKALEIKAVMERMGIQLDVYTY 346

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +  GLCRV R E+A+K L  ++E G+    V+Y  LI+   K+G ++EA +L   M+ 
Sbjct: 347 NTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEG 406

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           KG  P   ++N +I G+ +K+ + R +   KK M
Sbjct: 407 KGSRPSVVTYNVMIDGY-IKSGSIREAERFKKEM 439



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 37/199 (18%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C+     S +++G C   R+ +A  L D+M   G+      YNPL+ D + +Q   + +A
Sbjct: 130 CITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLL-DTYTRQKNDARVA 188

Query: 97  -LLQTLERDKYELNIEVYSLVIDGL----------------------------------- 120
            +L+ +E    E  +  Y++++DGL                                   
Sbjct: 189 EVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY 248

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G    A +  D+    G+ P   TY  LING CK G I  A+ LL  M+ +G   + 
Sbjct: 249 CRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQ 308

Query: 181 TSFNTVIQGFLVKNETDRA 199
             FNT+I G+      D+A
Sbjct: 309 IIFNTMIDGYCRHGMVDKA 327


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   +G  +NG C +  I       D  +  G   +V +Y+++I+ LC   ++  A+
Sbjct: 139 FEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTAL 198

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDG 119
           ++ + M   GI  +++TYN LI   +   G++   A +L  + R     ++  +S +ID 
Sbjct: 199 DVLNHMEKMGIRPDVITYNSLITRLFH-SGKWGVSARILSDMMRMGIHPDVITFSAMIDV 257

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             + G+  EA+K+ D++ ++ + P +VTYN LINGLC  G++ EA K+L  M  KG FP+
Sbjct: 258 FGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPN 317

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
           + ++NT++ G+      D A   L
Sbjct: 318 AVTYNTLVNGYCKSKRVDDAMKIL 341



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N  +Y   I+ +C+ R++D+A+       K GI  DV  Y+SLI  L    +   + 
Sbjct: 174 YEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSA 233

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
            +   M+  GI  +++T++ +I D + K+G+   A      + +   + NI  Y+ +I+G
Sbjct: 234 RILSDMMRMGIHPDVITFSAMI-DVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLING 292

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  G  +EA+K L+ +  KG  P  VTYN L+NG CK   + +A K+L  M   G   D
Sbjct: 293 LCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGD 352

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + ++NT+ QG+    + + A   L +
Sbjct: 353 TFTYNTLYQGYCQAGQFNAAEKVLAR 378



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 102/197 (51%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   ING+C    +D A       + KG   +   Y++L+NG C   
Sbjct: 273 EMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSK 332

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
           R+ +A+++   M   G+  +  TYN L +  + + G+F+A   +L  +       +I  +
Sbjct: 333 RVDDAMKILCVMSHDGVDGDTFTYNTL-YQGYCQAGQFNAAEKVLARMVSCGVLPDIYTF 391

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++DGLC  G+ E+A  KL+ L +   V G++TYNI+I G+CK   + +A  L   +  
Sbjct: 392 NMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLAL 451

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  PD  ++ T++ G 
Sbjct: 452 KGVSPDVITYTTMMIGL 468



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 95/174 (54%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           ++ D  I++ +  ++  Y+SLINGLC    L EA ++ + MV++G     VTYN L++  
Sbjct: 269 KQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGY 328

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            + +    AM +L  +  D  + +   Y+ +  G C+ G++  A K L ++   G++P +
Sbjct: 329 CKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDI 388

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            T+N+L++GLC+ G I +A   L  +++        ++N +I+G    N+ + A
Sbjct: 389 YTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDA 442



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 10/185 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  + F  N   Y   +NG CK + +D A+K        G+  D F Y++L  G C   +
Sbjct: 309 MVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQ 368

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A ++  +MV+ G+  ++ T+N L+ D   + G+   A+  L+ L++ +  + I  Y+
Sbjct: 369 FNAAEKVLARMVSCGVLPDIYTFNMLL-DGLCEHGKIEKALVKLEDLQKSETVVGIITYN 427

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KE 173
           ++I G+C+  + E+A      L+ KG+ P V+TY  ++ GL +K + +EA +L  +M K+
Sbjct: 428 IIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKD 487

Query: 174 KGCFP 178
            G  P
Sbjct: 488 DGLMP 492



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ +S+LI+  C  +RL  A+    KM+  G    +VT+  L++          A
Sbjct: 103 GISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEA 162

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M+L+  +    YE N+ +Y+ +ID LC   + + A   L+ + + G+ P V+TYN LI  
Sbjct: 163 MSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITR 222

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           L   G    + ++L  M   G  PD  +F+ +I  F
Sbjct: 223 LFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVF 258



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           +S L+  +    + +  + LF  +   GI+ +L +++ LI D + +  R S A++ L  +
Sbjct: 76  FSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLI-DCFCRCSRLSLALSCLGKM 134

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  +E +I  +  +++G C V R +EA   +DQ+   G  P VV YN +I+ LC+   +
Sbjct: 135 MKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQV 194

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVI 187
             A  +L  M++ G  PD  ++N++I
Sbjct: 195 DTALDVLNHMEKMGIRPDVITYNSLI 220



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  +A+ LF  M        +V ++ L+    + +   + ++L + +E      ++  +S
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID  CR  R   A   L ++ + G  P +VT+  L+NG C    I EA  L+ Q+   
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+   +NT+I       + D A
Sbjct: 173 GYEPNVVIYNTIIDSLCENRQVDTA 197


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++  A         +G   +  +Y +LI+G C   +L EA E+F
Sbjct: 278 NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVF 337

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM+  G +  + TY+ LI   ++ +    A+ +L  +  +    N+ +Y+ ++DGLC+V
Sbjct: 338 TKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKV 397

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA + +  + EKG  P VVTY  +I+G  K G +    +LL  M  KGC P+  ++
Sbjct: 398 GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITY 457

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I         D A   L++
Sbjct: 458 RVLINHCCAAGLLDDAHKLLEE 479



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 24/219 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   ++  CK+  I+ A        + G   +V  Y++LI+      +L  A E+F
Sbjct: 156 DVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIF 215

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--------------- 108
           + M++ G    +VTY  LI  + +      A  +   ++ DK ++               
Sbjct: 216 EMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELK 275

Query: 109 --NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  ++DGLC+  + +EAR  L+ +S +G  P  + Y+ LI+G CK G + EA +
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQE 335

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  +M   GC P+  +++++I         D A   L K
Sbjct: 336 VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTK 374



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------------IKKGICLDVFVYSSLINGLCTFN 54
           ++  + VY I I G+C   ++ S              ++ G+ L+     +    LC   
Sbjct: 42  YQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIG 101

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + ++A  +  +M+++G   +  TY+ +I           A  L Q ++R+    ++  Y+
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYT 161

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D  C+VG  E+AR   D++ + G  P VVTY  LI+   K   +  A+++   M   
Sbjct: 162 TLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSN 221

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+  ++  +I G     ET++A
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKA 246



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 43/215 (20%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I +G      +++SL++  C       A +L  KMV  G     V YN LI      +  
Sbjct: 3   ITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED- 61

Query: 92  FSAMALLQTLERDKYEL------------------------------------------N 109
             +M ++   ER   E+                                          +
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              YS VI  LC   + E+A +   ++   G+ P V TY  L++  CK G+I +A     
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +M++ GC P+  ++  +I  +L   +  RA+   +
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFE 216



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 41/229 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   ++G+CK+ + D A +       KG   +V  Y+++I+G     R
Sbjct: 375 MLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGR 434

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD--------------------NWEKQ-GRF-- 92
           +   +EL   M ++G     +TY  LI+                      W K  G +  
Sbjct: 435 VDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRK 494

Query: 93  ----------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                     +++ LL  L  D     + VY L+ID   + GR E A +  ++LS     
Sbjct: 495 VIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFS-A 553

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               TY  LI  L     + +A KL   M  +G  P+ +    +I+G L
Sbjct: 554 AYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLL 602



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 41/166 (24%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR--- 122
           M+ +G     + +N L+H        F A  LL+ +    Y+    VY+++I G+C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 123 --------------------------------------VGRWEEARKKLDQLSEKGLVPG 144
                                                 +G++E+A   + ++  KG +P 
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             TY+ +I  LC    + +A +L  +MK  G  PD  ++ T++  F
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRF 167


>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 9/198 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T+Q F  +   Y   I G+  I+E+D A+K        G C DV  ++ LI GLC  N
Sbjct: 556 NMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVN 615

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  EA +LF ++V +G++  +VTYN  I D W K G    AMA L  + ++    ++  Y
Sbjct: 616 RFTEAEDLFHELVKRGLSPSVVTYNLFI-DCWCKNGNVDKAMAHLFRMTKEDKVPSVVTY 674

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DG C+  R ++A     ++ + G  P  +T+  LI GLCK     EA   L +M++
Sbjct: 675 TTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYGLCKCCRPTEALCYLREMQQ 734

Query: 174 KGCFPDSTSFNTVIQGFL 191
           K   PDS  +  ++  +L
Sbjct: 735 KEMKPDSFIYVALLSAYL 752



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+  LC   R+ EA E  D M  QG   ++V+Y+  I      Q    AM + + L    
Sbjct: 537 LVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHG 596

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           +  ++  ++++I GLC+V R+ EA     +L ++GL P VVTYN+ I+  CK G + +A 
Sbjct: 597 HCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVTYNLFIDCWCKNGNVDKAM 656

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             L +M ++   P   ++ T++ GF  +   D A
Sbjct: 657 AHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDA 690



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFV-------YSSLINGLCTFNRLKEAVELF 63
           N   + I I+G  K  ++D A+     +  FV       Y++LI+ LC  NRL+++ EL 
Sbjct: 425 NITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELL 484

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI     TYN +     +++   +A  +L+ +    +   I+  +L++  LC  
Sbjct: 485 REMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCDH 544

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  EA + LD ++++G +P +V+Y+  I GL     +  A K+   +   G  PD   F
Sbjct: 545 GRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCF 604

Query: 184 NTVIQGF 190
           N +I+G 
Sbjct: 605 NVLIRGL 611



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 8/178 (4%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
            +K+ +  ++  +S +I+G    ++L  A+ LF+ M        ++ YN LI D+  K  
Sbjct: 417 TVKRMVFPNITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLI-DSLCKSN 475

Query: 91  RFSAMALLQTLERDKYELNIE----VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           R         L R+  EL IE     Y+ +   LC+      A   L ++   G  P + 
Sbjct: 476 RLEKS---YELLREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIK 532

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              +L+  LC  G ++EA + L  M ++G  PD  S++  I G +   E D A    K
Sbjct: 533 HTTLLVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFK 590



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 28/230 (12%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E  F  +  +Y + I G+CK ++ D AI       + G+  D+ + + LI+       + 
Sbjct: 294 EDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLISCFSDSKSMV 353

Query: 58  EAVELFDKMVAQGITAELVTYNPL----IHDNWEKQG-RFSAMALLQTLERDKYE----- 107
             +        +     ++ YN L    ++D    +  R   M +      D  E     
Sbjct: 354 SRLLEEIPEGEEDEQTLVLIYNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDV 413

Query: 108 ----------LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
                      NI  +S+VIDG  +  + + A    + +      P ++ YN LI+ LCK
Sbjct: 414 FFKTVKRMVFPNITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCK 473

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
              + ++ +LL +MKE G  P   ++N+ I G L K +   A+  + K M
Sbjct: 474 SNRLEKSYELLREMKELGIEPTHFTYNS-IYGCLCKRKDVSAACVMLKEM 522



 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           T  P+I      Q    A+++ + +E +K  ++  V S++     ++G  ++A + ++++
Sbjct: 198 TLTPVIVTYCNAQRFDQALSVYKEME-EKGWVDERVCSMMALCFSKLGEVDKAFELVERM 256

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNE 195
            E G+     T+ +LI+G  K+  + +A +L  +M+ +  F PD + ++ +I G     +
Sbjct: 257 GECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKD 316

Query: 196 TDRASSFLKK 205
           TDRA S   +
Sbjct: 317 TDRAISLFSE 326



 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 36/212 (16%)

Query: 24  KIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAEL 75
           K+ E+D A +        G+ L    +  LI+G    +R+ +A++LFDKM  +   T ++
Sbjct: 242 KLGEVDKAFELVERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPDV 301

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI----DGLCRVGRWEEARK 131
             Y+ LI    + +    A++L   ++      +I + + +I    D    V R  E   
Sbjct: 302 SLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLISCFSDSKSMVSRLLEEIP 361

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL---LVQMK---------------- 172
           + ++  +      V+ YN L+      G++ EA +L   ++Q K                
Sbjct: 362 EGEEDEQT----LVLIYNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDVFFKT 417

Query: 173 -EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++  FP+ TSF+ VI GFL  ++ D A S  
Sbjct: 418 VKRMVFPNITSFSIVIDGFLKNDQLDLALSLF 449



 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMAL-LQ 99
            +S  +  L     + +A +LFD+M  +G+   +  ++N L+ +   K G    M + L 
Sbjct: 127 AFSFFLRCLGNLRLVHQANQLFDEMSRKGLFVPDRYSHNTLL-EVISKCGLVDLMEMRLN 185

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            ++   +E +    + VI   C   R+++A     ++ EKG V   V  +++     K G
Sbjct: 186 EMKGFGWEFDKYTLTPVIVTYCNAQRFDQALSVYKEMEEKGWVDERVC-SMMALCFSKLG 244

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + +A +L+ +M E G      +F  +I GF+ ++  D+A     K
Sbjct: 245 EVDKAFELVERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDK 290


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +LTE  F  N  +Y   I+G CK  EI+ A        K G+  +   Y+ LINGL    
Sbjct: 188 ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNG 247

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
             K+  E+++KM   G+   L TYN  + +   K GR   A  +   +       NI  Y
Sbjct: 248 VKKQGFEMYEKMQEDGVFPNLYTYN-CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLCR  +  EA K +DQ+   G+ P ++TYN LI+G C  G + +A  L   +K 
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P   ++N ++ GF  K +T  A+  +K+
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+  +++ A K        GI  ++  Y++LI+G C   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A+ L   + ++G++  LVTYN L+     K     A  +++ +E    + +   Y+
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   R    E+A +    + E GLVP V TY++LI+G C KG + EA +L   M EK
Sbjct: 413 ILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P+   +NT+I G+  +  + RA   LK+
Sbjct: 473 NCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
           F++ +     N   Y + ING+ K           +   + G+  +++ Y+ ++N LC  
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R K+A ++FD+M  +G++  +VTYN LI     +     A  ++  ++ D    N+  Y
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C VG+  +A      L  +GL P +VTYNIL++G C+KG    A K++ +M+E
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  P   ++  +I  F   +  ++A
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKA 427



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 106/185 (57%), Gaps = 7/185 (3%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + +GI I G C+  EI+ +        + G   +V +Y++LI+G C    +++A +LF +
Sbjct: 164 YSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G+ A   TY  LI+  ++   +     + + ++ D    N+  Y+ V++ LC+ GR
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A +  D++ E+G+   +VTYN LI GLC++  + EA+K++ QMK  G  P+  ++NT
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343

Query: 186 VIQGF 190
           +I GF
Sbjct: 344 LIDGF 348



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C + ++  A+        +G+   +  Y+ L++G C       A ++ 
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396

Query: 64  DKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            +M  +GI    VTY  LI      DN EK     A+ L  ++E      ++  YS++I 
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEK-----AIQLRLSMEELGLVPDVHTYSVLIH 451

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G+  EA +    + EK   P  V YN +I G CK+G    A KLL +M+EK   P
Sbjct: 452 GFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  S+  +I+    + ++  A   ++K
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEK 538



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL  +    +   Y I ++G C+  +   A K       +GI      Y+ LI+     +
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A++L   M   G+  ++ TY+ LIH    K     A  L +++     E N  +Y+
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+ G    A K L ++ EK L P V +Y  +I  LCK+    EA++L+ +M + 
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDS 542

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRAS 200
           G  P STS  ++I     KN++  +S
Sbjct: 543 GIDP-STSILSLIS--RAKNDSHVSS 565



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y  +IN       L  ++  F++MV  G       +N L+       G  S        
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLL---TFVVGSSSFNQWWSFF 152

Query: 102 ERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
             +K ++ ++VYS  ++I G C  G  E++   L +L+E G  P VV Y  LI+G CKKG
Sbjct: 153 NENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            I +A  L  +M + G   +  ++  +I G L KN
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLING-LFKN 246



 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +V  V ++ ILI G C+ G I ++  LL+++ E G  P+   + T+I G   K E ++A
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 10/213 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCT 52
           FD  +QR  + N   +   I+G C+ R IDSA+         G+  D+ +Y++L+NGLC 
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
              + +A +L D+M   G+  + +TY  LI D + K+G   SAM + + +  +   L+  
Sbjct: 376 VGDVNKARKLVDEMRMVGMKPDKITYTTLI-DGYCKEGDLESAMEIRKGMNEEGVVLDNV 434

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ +I G CR GR  +A + L ++ E G+ P   TY ++I+G CKKG +    KLL +M
Sbjct: 435 AFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEM 494

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +  G  P   ++N ++ G   + +   A+  L+
Sbjct: 495 QINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 7/179 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING+CK R +D   +         I  DVF YS LI+GLC   RL  A +LFD+M  +G+
Sbjct: 265 INGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGL 324

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +T+  LI      +   SAM     +     + ++ +Y+ +++GLC+VG   +ARK
Sbjct: 325 RPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARK 384

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +D++   G+ P  +TY  LI+G CK+G +  A ++   M E+G   D+ +F  +I GF
Sbjct: 385 LVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF 443



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E  F      Y I IN  CK   I  A        K+G+      +++LINGLC   
Sbjct: 213 EILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSR 272

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L E   L   M    I  ++ TY+ LIH    K+GR   A  L   +++     N   +
Sbjct: 273 NLDEGFRLKKTMEENRIYPDVFTYSVLIH-GLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG CR  R + A     Q+   G+ P +V YN L+NGLCK G + +A KL+ +M+ 
Sbjct: 332 TALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRM 391

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PD  ++ T+I G+  + + + A
Sbjct: 392 VGMKPDKITYTTLIDGYCKEGDLESA 417



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  +++SA++       +G+ LD   +++LI+G C   R+++A     +M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V  G+  +  TY  +I D + K+G       LL+ ++ + ++  +  Y+++++GLC+ G+
Sbjct: 460 VEAGMKPDDATYTMVI-DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+ +   G+ P  +TYNIL+ G CK G   +A+ LL    EKG   D   + +
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTS 575

Query: 186 VIQGF 190
           ++  +
Sbjct: 576 LVSEY 580


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 10/199 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSLINGLC--- 51
           ++ ++R + N   + I ING+CK  +++ A      IK  G   ++  Y++LI+G C   
Sbjct: 190 EMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKG 249

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
           +  ++  A  +  +M+A  I    +T+N LI    + +   +A    + ++R   + NI 
Sbjct: 250 SAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIV 309

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+GL   G+ +EA    D++   GL P +VT+N LING CKK MI EA KL   +
Sbjct: 310 TYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDI 369

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            E+   P++ +FNT+I  F
Sbjct: 370 AEQDLVPNAITFNTMIDAF 388



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   I+G CK   + +A        ++G+  ++  Y+SLINGL    +L EA+ L+DKM
Sbjct: 275 TFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM 334

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V  G+   +VT+N LI+   +K+    A  L   +       N   ++ +ID  C+ G  
Sbjct: 335 VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMM 394

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EE     + + ++G+ P V TYN LI GLC+   +  A KLL +M+      D  ++N +
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL 454

Query: 187 IQGFLVKNETDRASSFL 203
           I G+    E  +A   L
Sbjct: 455 IGGWCKDGEPSKAEKLL 471



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 9/193 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           D+ EQ    N   +   I+  CK   ++       S + +GI  +V  Y+ LI GLC   
Sbjct: 368 DIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQ 427

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            ++ A +L ++M    + A++VTYN LI   W K G  S A  LL  +     + N   Y
Sbjct: 428 NVRAAKKLLNEMENYELKADVVTYNILI-GGWCKDGEPSKAEKLLGEMLNVGVKPNHVTY 486

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DG C  G  + A K   Q+ ++G    VVTYN+LI G CK G + +A++LL +M E
Sbjct: 487 NTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLE 546

Query: 174 KGCFPDSTSFNTV 186
           KG  P+ T+++ V
Sbjct: 547 KGLNPNRTTYDVV 559



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   +   ING CK + I  A K       + +  +   ++++I+  C    ++E  
Sbjct: 339 LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L + M+ +GI   + TYN LI      Q   +A  LL  +E  + + ++  Y+++I G 
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGW 458

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   +A K L ++   G+ P  VTYN L++G C +G +  A K+  QM+++G   + 
Sbjct: 459 CKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANV 518

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+GF    + + A+  L +
Sbjct: 519 VTYNVLIKGFCKTGKLEDANRLLNE 543



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK+ I  ++  ++  INGLC   +L +A ++ + + A G +  +VTYN LI  + +K   
Sbjct: 192 IKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSA 251

Query: 92  ---FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
              + A A+L+ +  +K   N   ++ +IDG C+      A+   +++  +GL P +VTY
Sbjct: 252 GKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTY 311

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           N LINGL   G + EA  L  +M   G  P+  +FN +I GF  K
Sbjct: 312 NSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKK 356



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C +  +   L+    T   +  A E+F ++   G    L + NPL+    +         
Sbjct: 127 CANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQY 186

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           + + + + + + N+  +++ I+GLC+ G+  +A   ++ +   G  P +VTYN LI+G C
Sbjct: 187 VYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHC 246

Query: 157 KKGM---IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           KKG    +  AD +L +M      P+  +FNT+I GF
Sbjct: 247 KKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGF 283



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C+ + + +A K         +  DV  Y+ LI G C      +A +L 
Sbjct: 412 NVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLL 471

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVIDGLCR 122
            +M+  G+    VTYN L+ D +  +G   A   ++T +E++    N+  Y+++I G C+
Sbjct: 472 GEMLNVGVKPNHVTYNTLM-DGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCK 530

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            G+ E+A + L+++ EKGL P   TY+++   + +KG I
Sbjct: 531 TGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFI 569



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 94/198 (47%), Gaps = 9/198 (4%)

Query: 13  HVYGIRINGMCKI-REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +V  + I+  C++ R +      G  L +   + L++ L   N   E   ++ +M+ + I
Sbjct: 140 YVTNLEIHSACEVFRRVQDY---GFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRI 196

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR---VGRWE 127
              L T+N  I +   K G+ + A  +++ ++   +  NI  Y+ +IDG C+    G+  
Sbjct: 197 QPNLTTFNIFI-NGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMY 255

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A   L ++    + P  +T+N LI+G CK   ++ A     +M+ +G  P+  ++N++I
Sbjct: 256 RADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLI 315

Query: 188 QGFLVKNETDRASSFLKK 205
            G     + D A +   K
Sbjct: 316 NGLSNNGKLDEAIALWDK 333


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L  +  K N   Y   + G C I         +D  +++    +    + +IN LC    
Sbjct: 259 LPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGL 318

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++     +KM   G TA +VTYN +I    E+    SA+ LL  ++    + +I  Y+ 
Sbjct: 319 LQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNT 378

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GLC   RWE+A + + ++S+   +P   T+N +I+  C+KG+I++A ++  QM EKG
Sbjct: 379 VLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKG 438

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P+ST+++T+I G     + ++A   L +
Sbjct: 439 CNPNSTTYSTIIGGLTKAGKMEQALELLNE 468



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA--IKKGICLDV-----FVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ++G C+   ++ A  +  G+   V     + ++ LI+ LC   R+ +A+ + D M
Sbjct: 130 TYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGM 189

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G   ++VTYN L+    + +G   A+ L+  +  +  E N   Y+++ID +CR G  
Sbjct: 190 LCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDV 249

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++AR+ L+ L  +G  P  V YN ++ G C     ++AD++L +M  + C P+  + N +
Sbjct: 250 DQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVI 309

Query: 187 IQGFLVKNETDRASSFLKK 205
           I     K    + + +L+K
Sbjct: 310 INTLCRKGLLQKVTLYLEK 328



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  + +G   DV  Y+ L+   C     ++A+EL D M A+G     VTYN +I     
Sbjct: 186 LDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCR 245

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A  LL +L     + N   Y+ V+ G C + RW +A + LD++  +   P   T
Sbjct: 246 EGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEAT 305

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            N++IN LC+KG++ +    L +M + GC  +  ++N VI G   +   D A   L 
Sbjct: 306 LNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLS 362



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+ MC+  ++D A         +G   +   Y++++ G C+  R  +A E+ 
Sbjct: 232 NNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEIL 291

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCR 122
           D+MV +       T N +I +   ++G    + L L+ + +     N+  Y+ VI G+C 
Sbjct: 292 DEMVRENCPPNEATLNVII-NTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCE 350

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  + A + L  +   G  P +VTYN ++ GLC      +A++L+++M +    PD+++
Sbjct: 351 QGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNST 410

Query: 183 FNTVIQ 188
           FNT+I 
Sbjct: 411 FNTIIS 416



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 41/244 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           +++     N   Y   I+GMC+   +DSA++        G   D+  Y++++ GLC+ +R
Sbjct: 329 MSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADR 388

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A EL  KM       +  T+N +I    +K     A  + + +       N   YS 
Sbjct: 389 WEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYST 448

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKG----------------------------------L 141
           +I GL + G+ E+A + L++++ KG                                  +
Sbjct: 449 IIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGI 508

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P  V YN ++ GLC+ G    A  +L  M   GC PD +++  +I+G   +  +  A  
Sbjct: 509 SPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARE 568

Query: 202 FLKK 205
            L +
Sbjct: 569 LLSR 572



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           ++GR +  A  + +E    E     Y  ++DG CR G  E+AR+ +  +           
Sbjct: 108 RRGRPADAA--RVVEACGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYA 165

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           +N LI+ LC++G + +A  +L  M  +GC PD  ++N ++Q 
Sbjct: 166 HNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQA 207



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG   +   YS++I GL    ++++A+EL ++M  +G   + +    ++ ++  K+ + 
Sbjct: 436 EKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYR--VLTESLNKEDKI 493

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + ++  L+         +Y+ V+ GLCR G+ + A   L  +   G +P   TY IL
Sbjct: 494 EEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIIL 553

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           I GL  +G   EA +LL ++    C  D      V+   L+KNE 
Sbjct: 554 IEGLFYEGYSKEARELLSRL----CSRD------VLSNSLIKNEA 588


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +YG  ++G CK+  ++ A K       +G   +  VY +LI+GLC   +L EA E
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +M   G  A L TY+ LI   ++ + +  A  +L  +  +    N+ +Y+ +IDGLC
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +VG+ +EA K +  + EKG  P VVTY  +I+G  + G I    +LL +M  KG  P+  
Sbjct: 757 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYV 816

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  +I         D A + L++
Sbjct: 817 TYRVLIDHCCKNGALDVAHNLLEE 840



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 17/184 (9%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G+  DV+ Y+ +++  C    +++A + F++M   G T  +VTY  LIH   + +   
Sbjct: 511 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVS 570

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV---------- 142
            A  L +T+  +    NI  YS +IDG C+ G+ E+A +  +++     V          
Sbjct: 571 YANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQY 630

Query: 143 -------PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
                  P VV Y  L++G CK   + EA KLL  M  +GC P+   ++ +I G     +
Sbjct: 631 DDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 690

Query: 196 TDRA 199
            D A
Sbjct: 691 LDEA 694



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L+    SS    LC+  + ++A  +  +M+ QG   +  TY+ ++         
Sbjct: 440 LATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKM 499

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L + ++R     ++  Y++++D  C+ G  E+ARK  +++ E G  P VVTY  L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+   K   +  A++L   M  +GC P+  +++ +I G     + ++A    ++
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFER 613



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 42/239 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI--------------------HDNWEKQGR---- 91
           ++  +EL ++M ++G+    VTY  LI                      +W         
Sbjct: 796 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRK 855

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKG 140
                      ++ LL  + +D     + +Y L++D L +  R E A + L++++     
Sbjct: 856 VIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSAT 915

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LV    TYN LI  LC    + +A +L  +M +KG  P+  +F ++I+G    ++   A
Sbjct: 916 LVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEA 974



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 77  TYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           TYN LI      D  +          L  L  D + L    YSL     C+VG+W EA  
Sbjct: 237 TYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSL-----CKVGKWREA-- 289

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L  +  +  VP  V Y  LI+GLC+  +  EA   L +M+   C P+  +++T++ G L
Sbjct: 290 -LTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 192 VKNETDRASSFLKKNM 207
            K +  R    L   M
Sbjct: 349 NKKQLGRCKRVLNMMM 364



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +E + +  +   Y+ +I GLC    +EEA   L+++     +P VVTY+ L+ G   
Sbjct: 290 LTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  +    ++L  M  +GC+P    FN+++  +    +   A   LKK
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 397



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+ LI+GLC  +  +EA++  ++M A      +VTY+ L+     K+       +L
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
             +  +    + ++++ ++   C  G    A K L ++ + G  PG V YNILI  +C
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSIC 418



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 44/209 (21%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   Y   I+G  +I +I++ ++       KG+  +   Y  LI+  C    
Sbjct: 771 MEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 830

Query: 56  LKEAVELFDKM--------------------------------VAQGITAELVTYNPLIH 83
           L  A  L ++M                                + Q  TA  ++   L+ 
Sbjct: 831 LDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLV 890

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           DN  K  R   MAL    E   +   +      Y+ +I+ LC   + ++A +   ++S+K
Sbjct: 891 DNLIKAQRLE-MALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKK 949

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLL 168
           G++P + T+  LI GL +   I EA  LL
Sbjct: 950 GVIPEMQTFCSLIKGLFRNSKISEALLLL 978


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E+    +   Y   IN  C+          +DS   KG+   VF Y+++INGLC   
Sbjct: 383 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 442

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPL---------------IHDNWEKQG------RFS 93
           +   A  + D+M+  G++ +  TYN L               I D    QG       FS
Sbjct: 443 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 502

Query: 94  AM--------ALLQTLE--RDKYELNIE----VYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           A+         L Q L+  RD     +     +Y+++I G CR G   EA K  D++ E+
Sbjct: 503 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 562

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G    VVTYN ++NGLCK+ M+ EAD+L  +M E+G FPD  +F T+I G+      ++A
Sbjct: 563 GCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKA 622

Query: 200 SSFLK 204
            +  +
Sbjct: 623 VTLFE 627



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 11/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y   +NG+CK + +  A        ++G+  D + +++LING     
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEV 112
            + +AV LF+ M+ + +  ++VTYN LI D + K      +  L    + R  Y  +I  
Sbjct: 618 NMNKAVTLFEMMIQRNLKPDVVTYNTLI-DGFCKGSEMEKVNELWNDMISRRIYPNHIS- 675

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y ++I+G C +G   EA +  D++ EKG    ++T N ++ G C+ G  ++AD+ L  M 
Sbjct: 676 YGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNML 735

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KG  PD  ++NT+I GF+ +   DRA + + K
Sbjct: 736 LKGIVPDGITYNTLINGFIKEENMDRAFALVNK 768



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I G C+       ++  D  +++G  LDV  Y++++NGLC    L EA ELF +M
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEM 594

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +  T+  LI + + K G  + A+ L + + +   + ++  Y+ +IDG C+   
Sbjct: 595 TERGVFPDFYTFTTLI-NGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 653

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E+  +  + +  + + P  ++Y ILING C  G + EA +L  +M EKG      + NT
Sbjct: 654 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 713

Query: 186 VIQGFLVKNETDRASSFLK 204
           +++G+       +A  FL 
Sbjct: 714 IVKGYCRAGNAVKADEFLS 732



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           F++  QR  K +   Y   I+G CK  E++         I + I  +   Y  LING C 
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 685

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
              + EA  L+D+MV +G  A ++T N ++       N  K   F +  LL+ +  D   
Sbjct: 686 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI- 744

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+ +I+G  +    + A   ++++   GL+P V+TYN+++NG  ++G + EA+ +
Sbjct: 745 ----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +++M E+G  PD +++ ++I G + +N    A
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 832



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+RE   A +    KG+C+ +   +SL+ GL     +  A E++ ++V  G+   + T N
Sbjct: 303 KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 362

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I+   + Q   +  + L  +E      ++  Y+ +I+  CR G  EEA + +D +S K
Sbjct: 363 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 422

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           GL P V TYN +INGLCK G  + A  +L +M + G  PD+ ++N ++
Sbjct: 423 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE+    +F+ +   ING  K   ++ A       I++ +  DV  Y++LI+G C  +
Sbjct: 593 EMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 652

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++  EL++ M+++ I    ++Y  LI+          A  L   +    +E  I   +
Sbjct: 653 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCN 712

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G   +A + L  +  KG+VP  +TYN LING  K+  +  A  L+ +M+  
Sbjct: 713 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS 772

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++N ++ GF
Sbjct: 773 GLLPDVITYNVILNGF 788



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +R   N   YGI ING C +       R  D  ++KG    +   ++++ G C   
Sbjct: 663 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 722

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A E    M+ +GI  + +TYN LI+   +++    A AL+  +E      ++  Y+
Sbjct: 723 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 782

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G  R GR +EA   + ++ E+G+ P   TY  LING   +  + EA ++  +M ++
Sbjct: 783 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 842

Query: 175 GCFPD 179
           G  PD
Sbjct: 843 GFVPD 847



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 2/189 (1%)

Query: 17  IRINGMCKIREIDS-AIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +R +G+ ++  ++S  +  G C  +  V+  L+       +L+E  E F  + ++G+   
Sbjct: 263 VRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVS 322

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +   N L+    +      A  + Q + R   ++N+   +++I+ LC+  + E  +  L 
Sbjct: 323 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 382

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            + EKG+ P VVTYN LIN  C++G++ EA +L+  M  KG  P   ++N +I G     
Sbjct: 383 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 442

Query: 195 ETDRASSFL 203
           +  RA   L
Sbjct: 443 KYLRAKGVL 451


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++  A         +G   +  VY +LI+G C   +L EA E+F
Sbjct: 378 NVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVF 437

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M+  G    + TY+ LI D   K  R   A+ +L  +  +    N+ +Y+ +IDGLC+
Sbjct: 438 TTMLECGYDPNVYTYSSLI-DRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG+ +EA K +  + EKG  P VVTY  +I+G  K G + +  +LL QM  KGC P+  +
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVT 556

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I         D A   L++
Sbjct: 557 YRVLINHCCSTGLLDEAHKLLEE 579



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK  ++D A       ++ G   +V+ YSSLI+ L    RL  A+++ 
Sbjct: 413 NHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVL 472

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM+       +V Y  +I D   K G+   A  L+  +E      N+  Y+ +IDG  +
Sbjct: 473 SKMLENSCAPNVVIYTEMI-DGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGK 531

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR E+  + L Q+S KG  P  VTY +LIN  C  G++ EA KLL +MK+         
Sbjct: 532 SGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAG 591

Query: 183 FNTVIQGF 190
           +  VI+GF
Sbjct: 592 YRKVIEGF 599



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 12  FHVYGIRINGMCKIRE-----IDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           + VY I I G+C   E     +D A       ++ G+ L+    S+    LC   + ++A
Sbjct: 147 YVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKA 206

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             +  +M+++G   +  TY+ +I           A  L Q ++R+    ++ VY+ +ID 
Sbjct: 207 YNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDS 266

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+ G  E+AR   D++   G  P VVTY  LI+   K   + +A+++   M  KGC P+
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPN 326

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
             ++  +I G     + ++AS   K
Sbjct: 327 IVTYTALIDGLCKAGKIEKASQIYK 351



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 26/220 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +VY   I+  CK   I+ A        + G   +V  Y++LI+      ++ +A E++
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVY 315

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL-------------- 108
           + M+++G T  +VTY  LI D   K G+   A  + + ++++  E+              
Sbjct: 316 EMMLSKGCTPNIVTYTALI-DGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGAS 374

Query: 109 ---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              N+  Y  ++DGLC+  + +EAR  L  +S +G  P  V Y+ LI+G CK G + EA 
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++   M E G  P+  +++++I         D A   L K
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSK 474



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           G CK R +   I +G      +++SL++  C       A +L  KMV  G     V YN 
Sbjct: 94  GRCK-RILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNI 152

Query: 81  LIHD--NWEKQGR----FSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKK 132
           LI    + E+ G+     +  A  + LE      ++NI  +S     LC +G++E+A   
Sbjct: 153 LIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRC---LCGIGKFEKAYNV 209

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + ++  KG +P   TY+ +I  LC    + +A +L  +MK  G  PD   + T+I  F
Sbjct: 210 IREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSF 267



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  LE++++  +  +Y+ +I GLC    +EEA   L ++     +P V+TY IL+ G   
Sbjct: 30  LSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLN 89

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  +    ++L  M  +GC+P    FN+++  +    +   A   LKK
Sbjct: 90  KEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKK 137



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A K       KG   +V  Y+++I+G     R
Sbjct: 475 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGR 534

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++ +EL  +M ++G     VTY  LI+          A  LL+ +++  +  ++  Y  
Sbjct: 535 VEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRK 594

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G  R   +  +     ++SE   VP    Y +LI+   K G +  A +L  ++    
Sbjct: 595 VIEGFNR--EFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFS 652

Query: 176 CFPDSTS--FNTVIQGFLVKNETDRA 199
            F  +      T+I+   + ++ D+A
Sbjct: 653 PFSAANQNIHITLIENLSLAHKADKA 678



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ G+W EA   L  L ++  VP  V Y  +I+GLC+  +  EA   L +M+   C P
Sbjct: 19  SLCKSGKWREA---LSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLP 75

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           +  ++  ++ G L K +  R    L
Sbjct: 76  NVLTYRILLCGCLNKEKLGRCKRIL 100



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 3/164 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  +D F      + LC   + +EA+ L +K   +    + V Y  +I    E      A
Sbjct: 5   GYRMDEFTLGCFAHSLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASLFEEA 61

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M  L  +       N+  Y +++ G     +    ++ L  +  +G  P    +N L++ 
Sbjct: 62  MDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHA 121

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            C+ G    A KLL +M + GC P    +N +I G     E  +
Sbjct: 122 YCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGK 165


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 2/168 (1%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AM 95
           C  +  +S  +   C  + + +A++L D+M  +G   ++VTYN LI +   K+GR   A+
Sbjct: 79  CFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI-NGICKEGRLDEAI 137

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
             L  +     + N+  +++++  +C  GRW +A K L  +  KG  P VVT+NILIN L
Sbjct: 138 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 197

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C++G++  A  +L +M   GC P+S S+N ++ GF  + + DRA  +L
Sbjct: 198 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 245



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   +  AI         G   +   Y+ L++G C   ++  A+E  D M
Sbjct: 189 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 248

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G   ++VTYN L+     K G+   A+ +L  L        +  Y+ VIDGL +VG+
Sbjct: 249 VSRGCYPDIVTYNTLL-TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 307

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A K LD++  KGL P ++TY+ L++GL ++G + EA K    ++  G  P++ ++N+
Sbjct: 308 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 367

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G     +TDRA  FL
Sbjct: 368 IMLGLCKSRQTDRAIDFL 385



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 12/212 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   +   Y + ING+CK   +D AIK        G   +V  ++ ++  +C+
Sbjct: 105 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 164

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             R  +A +L   M+ +G +  +VT+N LI +   +QG    A+ +L+ +       N  
Sbjct: 165 TGRWMDAEKLLSDMLRKGCSPSVVTFNILI-NFLCRQGLLGRAIDILEKMPMHGCTPNSL 223

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++ G C+  + + A + LD +  +G  P +VTYN L+  LCK G +  A ++L Q+
Sbjct: 224 SYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 283

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             KGC P   ++NTVI G     +T+RA   L
Sbjct: 284 SSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 315



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK +++D AI+       +G   D+  Y++L+  LC   ++  AVE+ +++ 
Sbjct: 225 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 284

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A+ LL  + R   + +I  YS ++ GL R G+ 
Sbjct: 285 SKGCSPVLITYNTVI-DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 343

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    L   G+ P  +TYN ++ GLCK      A   L  M  K C P   ++  +
Sbjct: 344 DEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTIL 403

Query: 187 IQG 189
           I+G
Sbjct: 404 IEG 406



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D    KG   DV  Y+ LING+C   RL EA++  + M + G    ++T+N ++     
Sbjct: 105 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 164

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  LL  + R     ++  ++++I+ LCR G    A   L+++   G  P  ++
Sbjct: 165 TGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLS 224

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN L++G CK+  +  A + L  M  +GC+PD  ++NT++       + D A   L +
Sbjct: 225 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 67/124 (54%)

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           +    ++ G   AM LL  +     + ++  Y+++I+G+C+ GR +EA K L+ +   G 
Sbjct: 89  VQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 148

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P V+T+NI++  +C  G  M+A+KLL  M  KGC P   +FN +I     +    RA  
Sbjct: 149 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 208

Query: 202 FLKK 205
            L+K
Sbjct: 209 ILEK 212


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 96/174 (55%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG   DV  +++L+NGLC   R+ EA  L D+MV  G     VTY  +++   +    
Sbjct: 2   VEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDT 61

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ LL+ ++    + ++ +Y+ +ID LC+ G   +A+    ++ +KG+ P V+TYN +
Sbjct: 62  DSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCM 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G C  G   +A++LL  M E    PD  +FN +I  F+ + +   A    ++
Sbjct: 122 IDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYRE 175



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 46/247 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------------------------- 33
           + E   + N   YG  +NGMCK+ + DSA+                              
Sbjct: 36  MVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGH 95

Query: 34  -------------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
                        KGI  +V  Y+ +I+G C++ +  +A +L   M+   +  ++VT+N 
Sbjct: 96  HSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNA 155

Query: 81  LIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           LI + + K+G+ S    L  + L R+ +   I  Y+ +IDG C+  R ++A+   D +  
Sbjct: 156 LI-NAFVKEGKISEAEELYREMLGRNIFPDTI-TYNSLIDGFCKHSRLDDAKHIFDLMVS 213

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG  P V+T N LI G C+   + +  KLL +M  +G  PDS S+NT+I GF    + + 
Sbjct: 214 KGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNA 273

Query: 199 ASSFLKK 205
           A    ++
Sbjct: 274 AQDLFQE 280



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   +   +NG+C+   + E    +D  ++ G   +   Y +++NG+C    
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYS 114
              A+ L  KM    I A++V Y  +I D   K G  S    L T   DK    N+  Y+
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAII-DRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYN 119

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+W +A + L  + E  + P VVT+N LIN   K+G I EA++L  +M  +
Sbjct: 120 CMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGR 179

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
             FPD+ ++N++I GF   +  D A
Sbjct: 180 NIFPDTITYNSLIDGFCKHSRLDDA 204



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
            TE   KG   N   Y   I+G C   +   A       I+  +  DV  +++LIN    
Sbjct: 103 FTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVK 162

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             ++ EA EL+ +M+ + I  + +TYN LI D + K  R   A  +   +       N+ 
Sbjct: 163 EGKISEAEELYREMLGRNIFPDTITYNSLI-DGFCKHSRLDDAKHIFDLMVSKGGSPNVI 221

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
             + +I G CR  R ++  K L ++  +GLVP  V+YN LI+G C+ G +  A  L  +M
Sbjct: 222 TINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I G C+ + +D  IK       +G+  D   Y++LI+G C    L  A +LF +M++Q
Sbjct: 227 IGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++    + N   Y I I+  C+       I   D  I+ GI   V+ Y+SLING C F 
Sbjct: 390 NMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFG 449

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A  LF +M  +G+     T+  LI    +      A  L   +  +    N+  ++
Sbjct: 450 DLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFT 509

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC   +  EA +  D+L E+ + P  VTYN+LI G C+ G I +A +LL  M +K
Sbjct: 510 ALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK 569

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+ ++  +I G        +A  F+
Sbjct: 570 GLVPDTYTYRPLISGLCSTGRVSKAKDFI 598



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGI------CLDVFV----------YSSLINGLCTFN 54
           + H  G+R + +     ID+  K+G       C D+ V          Y++L+NGLC   
Sbjct: 670 DMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAG 729

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A  LF +M A  +    +TY   + DN  K+G       L          N   ++
Sbjct: 730 EMDRAGLLFKRMQAANVPPNSITYGCFL-DNLTKEGNMKEAIGLHHAMLKGLLANTVTHN 788

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C++GR+ EA K L +++E G+ P  VTY+ LI   C+ G +  + KL   M  +
Sbjct: 789 IIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNR 848

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N +I G  V  E D+A
Sbjct: 849 GLEPDLVAYNLLIYGCCVNGELDKA 873



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 44/220 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK   +  A++       KG+  DV  Y +L+ G C   + +  ++L D+M
Sbjct: 262 TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR--------------------FSAMALLQTL----E 102
           V  G +      + L+ D   KQG+                    F   AL+ +L    +
Sbjct: 322 VELGFSPTEAAVSGLV-DGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGD 380

Query: 103 RDKYEL------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            DK EL            N   YS++ID  CR GR + A    D++ + G+   V  YN 
Sbjct: 381 LDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNS 440

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LING CK G +  A+ L ++M  KG  P +T+F ++I G+
Sbjct: 441 LINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 12/198 (6%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++  A K        GI  +V+ +++LI+GLC+ N++ EA ELFD++V + I
Sbjct: 477 ISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKI 536

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VTYN LI + + + G+   A  LL+ + +     +   Y  +I GLC  GR  +A+
Sbjct: 537 KPTEVTYNVLI-EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAK 595

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +D L ++ +    + Y+ L++G C++G +MEA     +M ++G   D      +I G 
Sbjct: 596 DFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGA 655

Query: 191 LVKNETDRASSF-LKKNM 207
           L   + DR + F L K+M
Sbjct: 656 L--KQPDRKTFFDLLKDM 671



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFNRLKEAV 60
           F  N  VY   IN +CK  ++D A  +   + L     +   YS LI+  C   RL  A+
Sbjct: 361 FVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAI 420

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
             FD+M+  GI   +  YN LI+   +     +A +L   +     E     ++ +I G 
Sbjct: 421 SYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  + ++A K  +++ + G+ P V T+  LI+GLC    + EA +L  ++ E+   P  
Sbjct: 481 CKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTE 540

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            ++N +I+G+    + D+A   L+
Sbjct: 541 VTYNVLIEGYCRDGKIDKAFELLE 564



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ING CK  ++ +A         KG+      ++SLI+G C   ++++A +L++K
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNK 495

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+  GIT  + T+  LI           A  L   L   K +     Y+++I+G CR G+
Sbjct: 496 MIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGK 555

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A + L+ + +KGLVP   TY  LI+GLC  G + +A   +  + ++    +   ++ 
Sbjct: 556 IDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSA 615

Query: 186 VIQGF 190
           ++ G+
Sbjct: 616 LLHGY 620



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L E++ K     Y + I G C+  +ID A        +KG+  D + Y  LI+GLC+  
Sbjct: 530 ELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTG 589

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-- 112
           R+ +A +  D +  Q +    + Y+ L+H  + ++GR    AL  + E  +  +N+++  
Sbjct: 590 RVSKAKDFIDDLHKQNVKLNEMCYSALLH-GYCQEGRLME-ALSASCEMIQRGINMDLVC 647

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++IDG  +    +     L  + ++GL P  V Y  +I+   K+G   +A +    M 
Sbjct: 648 HAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMV 707

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + CFP+  ++  ++ G     E DRA    K+
Sbjct: 708 TEECFPNVVTYTALMNGLCKAGEMDRAGLLFKR 740



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 7/189 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    + + Y   I+G+C           ID   K+ + L+   YS+L++G C   
Sbjct: 565 DMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEG 624

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA+    +M+ +GI  +LV +  LI    ++  R +   LL+ +       +  +Y+
Sbjct: 625 RLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYT 684

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID   + G +++A +  D +  +   P VVTY  L+NGLCK G +  A  L  +M+  
Sbjct: 685 SMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAA 744

Query: 175 GCFPDSTSF 183
              P+S ++
Sbjct: 745 NVPPNSITY 753



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 8/196 (4%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+ K+R+        D ++  G+  D +  S+++  +C       A E    M A G 
Sbjct: 197 LNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGF 256

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN LIH   +      A+ + ++L       ++  Y  ++ G CR+ ++E   +
Sbjct: 257 DLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQ 316

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +D++ E G  P     + L++GL K+G I +A +L+V++   G  P+   +N +I    
Sbjct: 317 LMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLC 376

Query: 192 VKNETDRASSFLKKNM 207
              + D+A   L  NM
Sbjct: 377 KGGDLDKA-ELLYSNM 391



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V   S+L+NGL    +     ELFD+ V  G+  +  T + ++    E +    A   +
Sbjct: 189 EVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKI 248

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +E + ++L+I  Y+++I GLC+  R  EA +    L  KGL   VVTY  L+ G C+ 
Sbjct: 249 RWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRL 308

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                  +L+ +M E G  P   + + ++ G   + + D A   + K
Sbjct: 309 QQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVK 355



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 35/153 (22%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +  A+ KG+  +   ++ +I G C   R  EA ++  +M   GI  + VTY+ LI++   
Sbjct: 772 LHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYE--- 828

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                                            CR G    + K  D +  +GL P +V 
Sbjct: 829 --------------------------------YCRSGNVGASVKLWDTMLNRGLEPDLVA 856

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           YN+LI G C  G + +A +L   M  +G  PD+
Sbjct: 857 YNLLIYGCCVNGELDKAFELRDDMLRRGIIPDN 889


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+CK   ++ A       +  G+  D   Y+ LI+  C    L+EA + F  M
Sbjct: 520 TYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDM 579

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++ G+    VTY   IH    +   +SA    + +  +  E N   Y+++I  LCR GR 
Sbjct: 580 ISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRT 639

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +   ++ E+GLVP   TY +LI+G CK+G   +A +   +M + G  PD  +   +
Sbjct: 640 QLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKAL 699

Query: 187 IQGF 190
            +GF
Sbjct: 700 FKGF 703



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F Y+ LI GL     +K+A +L  +M  +GI   +VTYN +IH   +     +A      
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +     + ++  Y+ +++G C+ G  +EA      L   GL P V+TYNILI+G C+ G 
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           + EA +L  +M E+GC PD  ++  +++G
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKG 457



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL           Y I I+G C++ +++ A       +++G   DV  Y+ L+ G     
Sbjct: 403 DLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNAC 462

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A E FD+M+++G+  +   YN  I           A  L + +  +    +   Y+
Sbjct: 463 SLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDGLC+ G   +A+    ++   GL P  +TY  LI+  C++G++ EA K    M   
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + ++   I  +  +     A  + +K
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRK 613



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           ++RE+   + +GI  D   Y+ LI+GLC    L +A +L  KMV  G+  + +TY  LIH
Sbjct: 504 RLREV--MMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIH 561

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            + E+     A    + +  D    +   Y++ I   CR G    A     ++ E+G+ P
Sbjct: 562 AHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEP 621

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
             +TYN+LI+ LC+ G    A +   +M E+G  P+  ++  +I G
Sbjct: 622 NEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG 667



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   V  Y+++I+GL    +++ A   F +M A G+  +++TYN L++   +      
Sbjct: 337 EGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKE 396

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   L        +  Y+++IDG CR+G  EEAR+  +++ E+G +P V TY IL+ 
Sbjct: 397 ALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK 456

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           G      +  A +   +M  KG  PD  ++NT I+  L 
Sbjct: 457 GSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELT 495



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            ++ +I GL     L+EA E+ + M      A   TYNPLI     K     A  L   +
Sbjct: 276 THNVVITGLARKGDLEEAAEMVEGMRLSK-KASSFTYNPLITGLLAKGFVKKADDLQLEM 334

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E +     +  Y+ +I GL + G+ E A+ K  ++   GL P V+TYN L+NG CK G +
Sbjct: 335 ENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSL 394

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            EA  L   ++  G  P   ++N +I G+
Sbjct: 395 KEALLLFGDLRHAGLAPTVLTYNILIDGY 423



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 9/172 (5%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
             G+  DV   + ++  L    R  +   +  +M+  GI   +VTYN L+ D++ K+GR 
Sbjct: 195 SHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLL-DSFLKEGRN 253

Query: 93  SAMA-LLQTLE-RDKYELNIEV-YSLVIDGLCRVGRWEEARKKLD--QLSEKGLVPGVVT 147
             +A LL+ +E R    L  +V +++VI GL R G  EEA + ++  +LS+K       T
Sbjct: 254 DKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA---SSFT 310

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN LI GL  KG + +AD L ++M+ +G  P   ++N +I G L   + + A
Sbjct: 311 YNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAA 362



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK- 174
           V+  L    RW++      ++ + G+ P +VTYN L++   K+G   +   LL +M+ + 
Sbjct: 208 VLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRG 267

Query: 175 -GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            GC P+  + N VI G   K + + A+  ++
Sbjct: 268 SGCLPNDVTHNVVITGLARKGDLEEAAEMVE 298


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  + + +   +NG+CK   +  AI       ++G   DV+ Y+S+I+GLC    +KEAV
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E  D+M+ +  +   VTYN LI    ++     A  L + L       ++  ++ +I GL
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C       A +  +++  KG  P   TYN+LI+ LC KG + EA  +L QM+  GC    
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++NT+I GF   N+   A
Sbjct: 471 ITYNTLIDGFCKANKIREA 489



 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           + ++ +  + + Y   I+G+CK+ E+       D  I +    +   Y++LI+ LC  N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA EL   + ++GI  ++ T+N LI      +    AM L + +     E +   Y++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC  G+ +EA   L Q+   G    V+TYN LI+G CK   I EA+++  +M+  G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHG 500

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +S ++NT+I G       + AS  + +
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDASQLMDQ 530



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK  +++ A +       KGI  DV  ++SLI GLC     + A+ELF
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M ++G   +  TYN LI     K     A+ +L+ +E      ++  Y+ +IDG C+ 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA +  D++   G+    VTYN LI+GLCK   + +A +L+ QM  +G  PD  ++
Sbjct: 484 NKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTY 543

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N+++  F    +  +A+  ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQ 564



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 10/211 (4%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y + I+ +C   ++D A+         G    V  Y++LI+G C  N
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EA E+FD+M   G++   VTYN LI    + +    A  L+  +  +  + +   Y+
Sbjct: 485 KIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYN 544

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++   CR G  ++A   +  ++  G  P +VTY  LI+GLCK G +  A KLL  ++ K
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G      ++N VIQG   K +T  A +  ++
Sbjct: 605 GIALTPHAYNPVIQGLFRKRKTTEAINLFRE 635



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 8/195 (4%)

Query: 19  INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           ++G CK   ++ A+        + G   D + +++L+NGLC    +K A+E+ D M+ +G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++ TYN +I    +      A+  L  +       N   Y+ +I  LC+  + EEA 
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEAT 385

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +    L+ KG++P V T+N LI GLC       A +L  +M+ KGC PD  ++N +I   
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445

Query: 191 LVKNETDRASSFLKK 205
             K + D A + LK+
Sbjct: 446 CSKGKLDEALNMLKQ 460



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C  R    A++       KG   D F Y+ LI+ LC+  +L EA+ +  +M   G 
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++TYN LI D + K  +   A  +   +E      N   Y+ +IDGLC+  R E+A 
Sbjct: 467 ARSVITYNTLI-DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAS 525

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + +DQ+  +G  P   TYN L+   C+ G I +A  ++  M   GC PD  ++ T+I G 
Sbjct: 526 QLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585

Query: 191 LVKNETDRASSFLKK 205
                 + AS  L+ 
Sbjct: 586 CKAGRVEVASKLLRS 600



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 14  VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   IRE     D     G+  +   Y++LI+GLC   R+++A +L D+M
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G   +  TYN L+           A  ++Q +  +  E +I  Y  +I GLC+ GR 
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNT 185
           E A K L  +  KG+      YN +I GL +K    EA  L  +M E+    PD+ S+  
Sbjct: 592 EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRI 651

Query: 186 VIQGF 190
           V +G 
Sbjct: 652 VFRGL 656



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 108/205 (52%), Gaps = 10/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   + + I  +C+  ++  AI         G+  D   +++++ G      L  A+ 
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE-RDKYELNIEVYSLVIDG 119
           + ++MV  G +   V+ N ++H  + K+GR   A+  +Q +  +D +  +   ++ +++G
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVH-GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G  + A + +D + ++G  P V TYN +I+GLCK G + EA + L QM  + C P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPN 364

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
           + ++NT+I     +N+ + A+   +
Sbjct: 365 TVTYNTLISTLCKENQVEEATELAR 389



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + +    G   D+  Y +LI+GLC   R++ A +L   +  +GI      YNP+I   + 
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFR 622

Query: 88  KQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGV 145
           K+    A+ L  + LE+++   +   Y +V  GLC  G    EA   L +L EKG VP  
Sbjct: 623 KRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            +  +L  GL    M     KL+  + +K  F +
Sbjct: 683 SSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSE 716



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  ++++I  LCR  +   A   L+ +   GLVP   T+  ++ G  ++G +  A ++ 
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIR 247

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            QM E GC   + S N ++ GF  +   + A +F+++
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++S  G+ P V T+N+LI  LC+   +  A  +L  M   G  PD  +F T++QG++ + 
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEG 238

Query: 195 ETDRA 199
           + D A
Sbjct: 239 DLDGA 243


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 37/228 (16%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + + G+CK+R I       D  I++ +  +   Y++LI+G C    ++EA+   ++M
Sbjct: 194 AYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERM 253

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER---------------------- 103
             Q +   LVTYN L+ +     GR   A  +L  +E                       
Sbjct: 254 KEQNVECNLVTYNSLL-NGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGD 312

Query: 104 ----DKYELNIE--VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
               D  E+ I+   Y ++++GLCRVGR E+A + L +L E G+ P  ++YNIL+N  C+
Sbjct: 313 DGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQ 372

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G + +A     QM+E+G  P+  +FNTVI  F    E D A +++++
Sbjct: 373 EGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRR 420



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 35/233 (15%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFN 54
           D+ +   + +   YG  +     ++++D       S +K G+   VF Y+ ++ GLC   
Sbjct: 147 DVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVR 206

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+K+A +LFD+M+ + +    VTYN LI    +  G   A+   + ++    E N+  Y+
Sbjct: 207 RIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYN 266

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---------------------------- 146
            +++GLC  GR ++AR+ L ++   G +PG                              
Sbjct: 267 SLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDER 326

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           TY IL+NGLC+ G I +A+++L ++ E G  P   S+N ++  +  + +  +A
Sbjct: 327 TYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKA 379



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   +   I+  C+  E+D A       ++KG+   V  Y+SLING      
Sbjct: 386 MEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGH 445

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
                E  D+M   GI   +++Y  LI+   + +    A  +L  +       N E+Y++
Sbjct: 446 FVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNM 505

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+  C + + ++A +  D++ + G+   +VTYN LINGL + G + +A+ L +QM  KG
Sbjct: 506 LIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKG 565

Query: 176 CFPDSTSFNTVIQGF 190
           C PD  ++N++I G+
Sbjct: 566 CNPDVITYNSLISGY 580



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K I +D   Y  L+NGLC   R+++A E+  K+V  G+T   ++YN L++   ++     
Sbjct: 319 KEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKK 378

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + +E    E N   ++ VI   C  G  + A   + ++ EKG+ P V TYN LIN
Sbjct: 379 AILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLIN 438

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G  +KG  +   + L +M + G  P+  S+ ++I
Sbjct: 439 GYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLI 472



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   YG  IN +CK R++  A       I +G+  +  +Y+ LI   C+ ++LK+A  
Sbjct: 462 KPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFR 521

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
            FD+M+  GI A LVTYN LI +   + GR   A  L   +       ++  Y+ +I G 
Sbjct: 522 FFDEMIQSGIDATLVTYNTLI-NGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGY 580

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +    ++  +  D++   G+ P V T++ LI   C+K  ++  DK+  +M +    PD 
Sbjct: 581 AKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYA-CRKEGVVTMDKMFQEMLQMDLVPDQ 639

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
             +N +I  +       +A S  ++
Sbjct: 640 FVYNEMIYSYAEDGNVMKAMSLHQQ 664



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 39  DVFVYSS-----LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           D FV S+     L+  L      ++ + +F  ++  G   + V Y   +      +    
Sbjct: 116 DGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDK 175

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              L++++ +D    ++  Y+LV+ GLC+V R ++ARK  D++ ++ +VP  VTYN LI+
Sbjct: 176 GFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLID 235

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G CK G I EA     +MKE+    +  ++N+++ G       D A   L
Sbjct: 236 GYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVL 285



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 18/189 (9%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+ +   +  A         KG   DV  Y+SLI+G       ++ +EL+DKM
Sbjct: 537 TYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKM 596

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-----TLERDKYELNIEVYSLVIDGLC 121
              GI   + T++PLI+    K+G  +   + Q      L  D++  N  +YS   D   
Sbjct: 597 KILGIKPTVGTFHPLIY-ACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAED--- 652

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G   +A     Q+ ++G+    VTYN LI    +   + E   L+  MK KG  P   
Sbjct: 653 --GNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVD 710

Query: 182 SFNTVIQGF 190
           ++N +I+G 
Sbjct: 711 TYNILIKGL 719



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 10  GNFH--VYGIRINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           G FH  +Y  R  G+  + ++    ++  +  D FVY+ +I        + +A+ L  +M
Sbjct: 606 GTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQM 665

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V QG+  + VTYN LI      +       L+  ++       ++ Y+++I GLC +  +
Sbjct: 666 VDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDF 725

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             A     ++ E+GL+  V     LI+GL ++GM+ EA
Sbjct: 726 NGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREA 763



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 50  LCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           LC+ ++ L EA +L+  M   G      + N L+    + +     +A+   +       
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y   +     +   ++  + +  + + G+ P V  YN+++ GLCK   I +A KL 
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLF 215

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +M ++   P++ ++NT+I G+
Sbjct: 216 DEMIQRNMVPNTVTYNTLIDGY 237


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 100/174 (57%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   +V  +++L+NGLC   R+ +A+ L D+MV +G   + VTY  +++   +    
Sbjct: 2   VETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDT 61

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ +L+ ++  + + N+ +YS ++D LC+ G   +A+    ++ EKG+ P V+TYN +
Sbjct: 62  VSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G C  G   +A++LL  M E+   PD  +F+ +I  F+ + +   A    ++
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYRE 175



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 100/179 (55%), Gaps = 11/179 (6%)

Query: 21  GMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+C+  +++ A+       K  + LD    + +ING+C  N++ EA +LF+ +   G+  
Sbjct: 275 GLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVET 334

Query: 74  ELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           ++VTYN LI   + K+G F  +    L+ L +      +  Y+ ++DG C+  R EEAR+
Sbjct: 335 DVVTYNILI-GVFVKEGNFLRAEDIYLEMLCKGIIPSTV-TYNSMVDGFCKQNRLEEARQ 392

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +D +  +G  P VVT++ LI G CK G + +  +L  +M ++G   D+ ++N +I GF
Sbjct: 393 MVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGF 451



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I INGMCK  ++D A          G+  DV  Y+ LI           A +++ +M+ +
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK 365

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           GI    VTYN ++ D + KQ R   A  ++ ++  +    ++  +S +I G C+ GR ++
Sbjct: 366 GIIPSTVTYNSMV-DGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDD 424

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             +   ++ ++GLV   +TYN LI+G CK G +  A  +  +M   G  PD+ +F +++ 
Sbjct: 425 GLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLA 484

Query: 189 GFLVKNETDRASSFLK 204
           G   K E  +  + L+
Sbjct: 485 GLCTKAELQKGLTMLE 500



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 103/203 (50%), Gaps = 18/203 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR-----------L 56
           Y   I+G CK   ++ A       + KG   D+   ++LI+G C   R           +
Sbjct: 188 YSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNV 247

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
             A +LF +M++ G++ ++VT N L+    E      A+ + +  ++ K +L+    +++
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNII 307

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+G+C+  + +EA    + L   G+   VVTYNILI    K+G  + A+ + ++M  KG 
Sbjct: 308 INGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGI 367

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            P + ++N+++ GF  +N  + A
Sbjct: 368 IPSTVTYNSMVDGFCKQNRLEEA 390



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E     N   +   +NG+C+       +  +D  +++G   D   Y +++NG+C    
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A+ +  KM    I A +V Y+ ++    +      A  +   +       N+  Y+ 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C  G+W +A + L  + E+ + P VVT++ LIN   K+G +  A++L  +M  + 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 176 CFPDSTSFNTVIQGF 190
            FP + +++++I GF
Sbjct: 181 IFPTTITYSSMIDGF 195



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 22/222 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK------IREIDSAI-KKGICLDVFVYSSLINGLCTFNR 55
           + E + K N  +Y   ++ +CK       + I + + +KGI  +V  Y+ +I+G C++ +
Sbjct: 71  MDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGK 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVY 113
             +A +L   M+ + I  ++VT++ LI + + K+G+ S    L  + L R+ +   I  Y
Sbjct: 131 WSDAEQLLRDMIERNIDPDVVTFSALI-NAFVKEGKVSGAEELYREMLRRNIFPTTI-TY 188

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-----------LCKKGMIM 162
           S +IDG C+  R E+A+   D +  KG  P ++T N LI+G            C+ G + 
Sbjct: 189 SSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVN 248

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            A  L  +M   G  PD  + NT++ G     + ++A    K
Sbjct: 249 VAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFK 290



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 15/198 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   YG  +NGMCK+ +  SA+       +  I  +V +YS++++ LC    
Sbjct: 36  MVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGN 95

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE---- 111
             +A  +F +M  +GI   ++TYN +I D +   G++S     + L RD  E NI+    
Sbjct: 96  HIKAQNIFTEMHEKGIFPNVLTYNCMI-DGYCSYGKWSDA---EQLLRDMIERNIDPDVV 151

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            +S +I+   + G+   A +   ++  + + P  +TY+ +I+G CK   + +A  +   M
Sbjct: 152 TFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLM 211

Query: 172 KEKGCFPDSTSFNTVIQG 189
             KGC PD  + NT+I G
Sbjct: 212 VSKGCSPDIITLNTLIDG 229



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KGI      Y+S+++G C  NRL+EA ++ D MV++G + ++VT++ LI   + K GR  
Sbjct: 365 KGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIK-GYCKAGRVD 423

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             + L   + +     +   Y+ +I G C+VG    A+   +++   G+ P  +T+  ++
Sbjct: 424 DGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSML 483

Query: 153 NGLCKKGMIMEADKLLVQMKEK 174
            GLC K  + +   +L  +++ 
Sbjct: 484 AGLCTKAELQKGLTMLEDLQKS 505



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +   I G CK   +D  +       ++G+  D   Y++LI+G C    L  A ++F++MV
Sbjct: 409 FSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMV 468

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           + G+  + +T+  ++     K      + +L+ L++
Sbjct: 469 SSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQK 504


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  Q  K N   Y   ING+C   K+ E     D  +   +  ++  +++L+NG C   
Sbjct: 240 EMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNK 299

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K+A ELF+ M  Q IT  + TYN LI    + +    A AL + +       ++  Y+
Sbjct: 300 MVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYN 359

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLCR G  E AR ++ ++  K L   ++TYNIL++ LC KG + +  +LL +M +K
Sbjct: 360 CLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLDEMCKK 419

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P   ++NT+I G+
Sbjct: 420 GLKPSQLTYNTMIDGY 435



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ L V   + L++GL    ++ +A  +  +M A GI    VT+N LI      +    A
Sbjct: 178 GLKLSVTSCNPLMSGLV---KMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVA 234

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M +   + R   + N+  Y+ +I+GLC  G+  EA    DQ+    L P ++T+N L+NG
Sbjct: 235 MKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNG 294

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK  M+ +A +L   M ++   P+ T++N +I  +
Sbjct: 295 FCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAY 330



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 106 YELNIEVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           Y L + V S   ++ GL ++ +   A   L ++   G+ P  VT+NILI+G C    +  
Sbjct: 177 YGLKLSVTSCNPLMSGLVKMYK---ADAILKEMKADGICPNEVTFNILIDGFCNDKNVSV 233

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           A K+  +M  +G  P+  ++N++I G     + + A++ 
Sbjct: 234 AMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   K +  +Y   I+ +CK   ++ A+         GI  DV +Y+SL+NGLC   R
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            ++A  L   M  + I  +++T+N LI D + K+G+F  A  L   + R     NI  Y+
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALI-DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C  G  +EAR+    +  KG  P VV Y  LING CK   + +A K+  +M +K
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346

Query: 175 GCFPDSTSFNTVIQGF 190
           G   ++ ++ T+IQGF
Sbjct: 347 GLTGNTITYTTLIQGF 362



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 37/204 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   D+  ++SLING C  NR++EA+ + ++MV  GI  ++V Y  +I D+  K G 
Sbjct: 134 MKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTII-DSLCKNGH 192

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + A++L   +E      ++ +Y+ +++GLC  GRW +A   L  ++++ + P V+T+N 
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 151 LI-----------------------------------NGLCKKGMIMEADKLLVQMKEKG 175
           LI                                   NG C +G + EA ++   M+ KG
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           CFPD  ++ ++I GF    + D A
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDA 336



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CK +++D A+K       KG+  +   Y++LI G     +   A E+F  M
Sbjct: 319 AYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM 378

Query: 67  VAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           V++G+   + TYN L+H    N + +        +Q  E D    NI  Y++++ GLC  
Sbjct: 379 VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYN 438

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A    + + ++ +  G++TY I+I G+CK G +  A  L   +  KG  P+  ++
Sbjct: 439 GKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTY 498

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+I G   +     A    +K
Sbjct: 499 TTMISGLFREGLKHEAHVLFRK 520



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N + K+++ D  I         G+  D++  + L+N  C  ++   A     KM+  G 
Sbjct: 79  LNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGF 138

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++VT+  LI+          AM+++  +     + ++ +Y+ +ID LC+ G    A  
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             DQ+   G+ P VV Y  L+NGLC  G   +AD LL  M ++   PD  +FN +I  F+
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFV 258



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 3/174 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  I+  I  ++F Y+SLING C    + EA ++F  M  +G   ++V Y  LI+   + 
Sbjct: 271 NEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 330

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    AM +   + +     N   Y+ +I G  +VG+   A++    +  +G+ P + TY
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390

Query: 149 NILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRA 199
           N+L++ LC  G + +A  +   M+++   G  P+  ++N ++ G     + ++A
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ L+N +    +    + L D +   G++ +L T N L++   +    + A + L  + 
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +E +I  ++ +I+G C   R EEA   ++Q+ E G+ P VV Y  +I+ LCK G + 
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            A  L  QM+  G  PD   + +++ G         A S L+
Sbjct: 195 YALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLR 236



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 40/150 (26%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           RE+D     G+  +++ Y+ L++GLC   +L++A+ +F+ M                   
Sbjct: 416 REMD-----GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM------------------- 451

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                            + + ++ I  Y+++I G+C+ G+ + A      L  KG+ P V
Sbjct: 452 ----------------RKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNV 495

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VTY  +I+GL ++G+  EA  L  +MKE G
Sbjct: 496 VTYTTMISGLFREGLKHEAHVLFRKMKEDG 525



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 46/93 (49%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ +++ + ++ +++      D L   G+   + T N+L+N  C+      A   L +M 
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G  PD  +F ++I GF + N  + A S + +
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQ 167


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 42/211 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y I ING+CK+  I       + AI KG   DVF +++LI+G C   
Sbjct: 385 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 444

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A++L ++M   GI  + +TYN                                   
Sbjct: 445 KLDSALQLVERMWEYGIAPDTITYNS---------------------------------- 470

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            V++GLC+ G+  E  +   ++  KG  P  +TYNILI   C+   + EA K++V+M ++
Sbjct: 471 -VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 529

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+ SFNT+I GF    + + A    +K
Sbjct: 530 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 560



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLD---VFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + H + IR+   C       A++    L       Y +++ GL       +A +LFD+M+
Sbjct: 119 DLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML 178

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +   L  +N ++H   ++     A  LL  + +    +N+  Y++ I GLC  GR  
Sbjct: 179 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 238

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +D +     VP VVTYN LI GLCKK M  EA   L +M  +GC PD  ++NT+I
Sbjct: 239 EAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 297

Query: 188 QGFLVKNETDRASSFLK 204
            G+   +    A+  LK
Sbjct: 298 DGYCKISMVQEATELLK 314



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+CK       +  +   + +G   D F Y+++I+G C  + ++EA EL    
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 316

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   + VTY  LI+    +     A+ L    +    + +I VY+ ++ GLC  G  
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A + +++++E+G  P + TYNI+INGLCK G I +A  ++     KG  PD  +FNT+
Sbjct: 377 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 436

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G+  + + D A   +++
Sbjct: 437 IDGYCKRLKLDSALQLVER 455



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 42/179 (23%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++DSA++        GI  D   Y+S++NGLC   ++ E  E F +M+ +G 
Sbjct: 437 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TYN                                   ++I+  CR  + EEA K
Sbjct: 497 HPNPITYN-----------------------------------ILIENFCRSNKMEEASK 521

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            + ++S++GL P  V++N LI G C+ G +  A  L  +++EKG    + +FNT+I  F
Sbjct: 522 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 43/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   ++ +CK  ++  A       I++G+ +++F Y+  I GLC   RL EAV L 
Sbjct: 185 NLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLV 244

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M A  +  ++VTYN LI                                    GLC+ 
Sbjct: 245 DGMRAYAV-PDVVTYNTLIR-----------------------------------GLCKK 268

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              +EA   L ++  +G +P   TYN +I+G CK  M+ EA +LL     KG  PD  ++
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 328

Query: 184 NTVIQGFLVKNETDRA 199
            ++I G   + + +RA
Sbjct: 329 CSLINGLCAEGDVERA 344



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK  +++         I KG   +   Y+ LI   C  N+++EA ++  KM
Sbjct: 467 TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 526

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  + V++N LI+          A  L Q LE   Y    + ++ +I         
Sbjct: 527 SQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 586

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A K  D++  KG      TY +LI+G CK   +  A   LV+M +KG  P  ++F  V
Sbjct: 587 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 646

Query: 187 IQGFLVKNETDRA 199
           I    V +   +A
Sbjct: 647 INSLTVNHRVFQA 659



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I   C+  +++ A K       +G+  D   +++LI G C    L+ A  LF K+
Sbjct: 502 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 561

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G +A   T+N LI     K     A  +   +    +  +   Y ++IDG C+    
Sbjct: 562 EEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 621

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           + A   L ++ +KG +P + T+  +IN L     + +A  ++  M + G  P+
Sbjct: 622 DRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y + I       RL++AV+ F++M           YN ++    +      A  +   +
Sbjct: 52  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 111

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  ++  +++ +   C   R   A + L  L  +G     V Y  ++ GL   G  
Sbjct: 112 LAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHT 167

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A +L  QM     FP+  +FN V+     + +   A   L K
Sbjct: 168 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 211


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK  EI++A       + KG+  DV  +++LI GLC       A+E+F
Sbjct: 332 NTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMF 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G   +  TY+ LI     ++    A+ LL+ +E      N  VY+ +IDGLC+ 
Sbjct: 392 EEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R E+A +  DQ+   G+    VTYN LI+GLCK   + EA +L+ QM  +G  PD  ++
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTY 511

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N+++  F    + ++A   ++
Sbjct: 512 NSLLTYFCRVGDIEKAGDIVQ 532



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 17/211 (8%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I I+ +C  R +  A+         G   +  VY++LI+GLC   R+++A E
Sbjct: 400 KPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEE 459

Query: 62  LFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +FD+M   G++   VTYN LI     +   E+  +     +++ L+ DK+      Y+ +
Sbjct: 460 IFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKF-----TYNSL 514

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +   CRVG  E+A   +  ++  G  P + TY  LI GLC+ G +  A KLL  ++ KG 
Sbjct: 515 LTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGI 574

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
                ++N VIQ   ++  T       ++ M
Sbjct: 575 VLTPHAYNPVIQALFMRKRTKEGMRLFREMM 605



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 96/199 (48%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   I G+C  +  D A++       KG   D F YS LI+ LC   RLKEA+ L  +M
Sbjct: 370 TFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEM 429

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G     V YN LI D   K  R   A  +   +E      +   Y+ +IDGLC+  R
Sbjct: 430 ESSGCARNAVVYNTLI-DGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKR 488

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA + +DQ+  +GL P   TYN L+   C+ G I +A  ++  M   GC PD  ++ T
Sbjct: 489 VEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGT 548

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G       D AS  L+
Sbjct: 549 LIGGLCRAGRVDVASKLLR 567



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            +++E+ F  +   +   +NG C+I  ++ A       I+KG   DV+ Y+SLI+G+C  
Sbjct: 252 LEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKL 311

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
              ++A+E+  +M+ +  +   VTYN LI    ++    +A  L + L       ++  +
Sbjct: 312 GEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTF 371

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC     + A +  +++  KG  P   TY+ILI+ LC +  + EA  LL +M+ 
Sbjct: 372 NTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMES 431

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC  ++  +NT+I G 
Sbjct: 432 SGCARNAVVYNTLIDGL 448



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 17/192 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G+CK R I+ A +        G+      Y++LI+GLC   R++EA +L 
Sbjct: 437 NAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLM 496

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           D+M+ +G+  +  TYN L+       + EK G      ++QT+  +  E +I  Y  +I 
Sbjct: 497 DQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD-----IVQTMASNGCEPDIFTYGTLIG 551

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLCR GR + A K L  +  KG+V     YN +I  L  +    E  +L  +M EK   P
Sbjct: 552 GLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPP 611

Query: 179 DSTSFNTVIQGF 190
           D+ +   V +G 
Sbjct: 612 DALTHKIVFRGL 623



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 9/209 (4%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           E  FK + + Y I +N + +  ++          + +GI LDV  ++ LI  LC  ++L+
Sbjct: 116 ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLR 175

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLV 116
            A+ + ++M   G+  + +T+  L+    E+     A+ +  Q L       N+ V  LV
Sbjct: 176 PAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLV 235

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
            +G C+ GR EEA + + ++SE+G  P  VT+N L+NG C+ G + +A  ++  M EKG 
Sbjct: 236 -NGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGF 294

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            PD  ++N++I G     E ++A   L++
Sbjct: 295 DPDVYTYNSLISGMCKLGEFEKAIEILQQ 323



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 9/197 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + +NG CK   ++ A++       +G   D   ++SL+NG C    + +A+++ D M+ +
Sbjct: 233 VLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G   ++ TYN LI     K G F  A+ +LQ +   +   N   Y+ +I  LC+    E 
Sbjct: 293 GFDPDVYTYNSLI-SGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEA 351

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A      L  KGL+P V T+N LI GLC       A ++  +MK KGC PD  +++ +I 
Sbjct: 352 ATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILID 411

Query: 189 GFLVKNETDRASSFLKK 205
               +     A   LK+
Sbjct: 412 SLCYERRLKEALMLLKE 428



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 10/192 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y   +   C++ +I+ A          G   D+F Y +LI GLC   R+  A 
Sbjct: 504 LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVAS 563

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L   +  +GI      YNP+I   + ++     M L + +       +   + +V  GL
Sbjct: 564 KLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGL 623

Query: 121 CR-VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           C   G  +EA     ++ EKG++P   ++  L  GLC   M     +L+  + EK    +
Sbjct: 624 CNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSE 683

Query: 180 STSFNTVIQGFL 191
             +  ++I+GFL
Sbjct: 684 RET--SMIRGFL 693



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 78/215 (36%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           NFH     I  + KI E +   K     D   Y+  +N L   N+LK    L  KMV +G
Sbjct: 102 NFH----EIENLLKILENELGFKP----DTNFYNIALNALVEDNKLKLVEMLHSKMVNEG 153

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I  ++ T+N                                   ++I  LC+  +   A 
Sbjct: 154 IVLDVSTFN-----------------------------------VLIKALCKAHQLRPAI 178

Query: 131 KKLDQLSEKGLVPGVVTYN-----------------------------------ILINGL 155
             L++++  GL P  +T+                                    +L+NG 
Sbjct: 179 LMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGF 238

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           CK+G + EA + ++++ E+G  PD  +FN+++ GF
Sbjct: 239 CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGF 273



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 97  LLQTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           LL+ LE +  ++ +   Y++ ++ L    + +       ++  +G+V  V T+N+LI  L
Sbjct: 109 LLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           CK   +  A  +L +M   G  PD  +F T++QGF+ + + + A   +KK M
Sbjct: 169 CKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALK-MKKQM 219


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 42/211 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y I ING+CK+  I       + AI KG   DVF +++LI+G C   
Sbjct: 386 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 445

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A++L ++M   GI  + +TYN                                   
Sbjct: 446 KLDSALQLVERMWEYGIAPDTITYNS---------------------------------- 471

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            V++GLC+ G+  E  +   ++  KG  P  +TYNILI   C+   + EA K++V+M ++
Sbjct: 472 -VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 530

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+ SFNT+I GF    + + A    +K
Sbjct: 531 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 561



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLD---VFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + H + IR+   C       A++    L       Y +++ GL       +A +LFD+M+
Sbjct: 120 DLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML 179

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +   L  +N ++H   ++     A  LL  + +    +N+  Y++ I GLC  GR  
Sbjct: 180 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 239

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +D +     VP VVTYN LI GLCKK M  EA   L +M  +GC PD  ++NT+I
Sbjct: 240 EAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 298

Query: 188 QGFLVKNETDRASSFLK 204
            G+   +    A+  LK
Sbjct: 299 DGYCKISMVQEATELLK 315



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+CK       +  +   + +G   D F Y+++I+G C  + ++EA EL    
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   + VTY  LI+    +     A+ L    +    + +I VY+ ++ GLC  G  
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A + +++++E+G  P + TYNI+INGLCK G I +A  ++     KG  PD  +FNT+
Sbjct: 378 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 437

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G+  + + D A   +++
Sbjct: 438 IDGYCKRLKLDSALQLVER 456



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 42/179 (23%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++DSA++        GI  D   Y+S++NGLC   ++ E  E F +M+ +G 
Sbjct: 438 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TYN                                   ++I+  CR  + EEA K
Sbjct: 498 HPNPITYN-----------------------------------ILIENFCRSNKMEEASK 522

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            + ++S++GL P  V++N LI G C+ G +  A  L  +++EKG    + +FNT+I  F
Sbjct: 523 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 43/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   ++ +CK  ++  A       I++G+ +++F Y+  I GLC   RL EAV L 
Sbjct: 186 NLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLV 245

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M A  +  ++VTYN LI                                    GLC+ 
Sbjct: 246 DGMRAYAV-PDVVTYNTLIR-----------------------------------GLCKK 269

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              +EA   L ++  +G +P   TYN +I+G CK  M+ EA +LL     KG  PD  ++
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 329

Query: 184 NTVIQGFLVKNETDRA 199
            ++I G   + + +RA
Sbjct: 330 CSLINGLCAEGDVERA 345



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK  +++         I KG   +   Y+ LI   C  N+++EA ++  KM
Sbjct: 468 TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 527

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  + V++N LI+          A  L Q LE   Y    + ++ +I         
Sbjct: 528 SQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 587

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A K  D++  KG      TY +LI+G CK   +  A   LV+M +KG  P  ++F  V
Sbjct: 588 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 647

Query: 187 IQGFLVKNETDRA 199
           I    V +   +A
Sbjct: 648 INSLTVNHRVFQA 660



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I   C+  +++ A K       +G+  D   +++LI G C    L+ A  LF K+
Sbjct: 503 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 562

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G +A   T+N LI     K     A  +   +    +  +   Y ++IDG C+    
Sbjct: 563 EEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 622

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           + A   L ++ +KG +P + T+  +IN L     + +A  ++  M + G  P+
Sbjct: 623 DRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y + I       RL++AV+ F++M           YN ++    +      A  +   +
Sbjct: 53  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 112

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  ++  +++ +   C   R   A + L  L  +G     V Y  ++ GL   G  
Sbjct: 113 LAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHT 168

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A +L  QM     FP+  +FN V+     + +   A   L K
Sbjct: 169 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 212


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 19  INGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           I G   +R +  A++    L      DVF Y++LING C  NR+ +A  + D+M ++  +
Sbjct: 127 IKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 186

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
            + VTYN +I     +     A+ +L  L  D  +  +  Y+++I+     G  +EA K 
Sbjct: 187 PDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 246

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           LD++  +GL P + TYN +I G+CK+GM+  A +++  ++ KGC PD  S+N +++  L 
Sbjct: 247 LDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLN 306

Query: 193 KNETDRASSFLKK 205
           + + +     + K
Sbjct: 307 QGKWEEGEKLMTK 319



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   ING CK+  ID A +       K    D   Y+ +I  LC+  
Sbjct: 144 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 203

Query: 55  RLK-----------------------------------EAVELFDKMVAQGITAELVTYN 79
           +L                                    EA++L D+M+++G+  ++ TYN
Sbjct: 204 KLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYN 263

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I    ++     A  +++ LE    E ++  Y++++  L   G+WEE  K + ++  +
Sbjct: 264 TIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 323

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P VVTY+ILI  LC+ G I EA  LL  MKEKG  PD+ S++ +I  F  +   D A
Sbjct: 324 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 383

Query: 200 SSFLK 204
             FL+
Sbjct: 384 IEFLE 388



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 10/180 (5%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-- 82
           ++ +D  + +G+  D+F Y+++I G+C    +  A E+   +  +G   ++++YN L+  
Sbjct: 244 LKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRA 303

Query: 83  ---HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                 WE+  +     L+  +  +K + N+  YS++I  LCR G+ EEA   L  + EK
Sbjct: 304 LLNQGKWEEGEK-----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 358

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P   +Y+ LI   C++G +  A + L  M   GC PD  ++NTV+       + D+A
Sbjct: 359 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 418



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +  K +   Y   I GMCK   +D A +       KG   DV  Y+ L+  L    
Sbjct: 249 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + +E  +L  KM ++     +VTY+ LI           AM LL+ ++      +   Y 
Sbjct: 309 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 368

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   CR GR + A + L+ +   G +P +V YN ++  LCK G   +A ++  ++ E 
Sbjct: 369 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 428

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+S+S+NT+        +  RA
Sbjct: 429 GCSPNSSSYNTMFSALWSSGDKIRA 453



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I  +C+  +I+ A+       +KG+  D + Y  LI   C   RL  A+E  
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 387

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M++ G   ++V YN ++    +      A+ +   L       N   Y+ +   L   
Sbjct: 388 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 447

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   + ++   G+ P  +TYN +I+ LC++GM+ +A +LLV M+     P   ++
Sbjct: 448 GDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTY 507

Query: 184 NTVIQGF 190
           N V+ GF
Sbjct: 508 NIVLLGF 514



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I   C+   +D AI+        G   D+  Y++++  LC   +
Sbjct: 355 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 414

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+E+F K+   G +    +YN +    W    +  A+ ++  +  +  + +   Y+ 
Sbjct: 415 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNS 474

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  ++A + L  +      P VVTYNI++ G CK   I +A  +L  M   G
Sbjct: 475 MISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNG 534

Query: 176 CFPDSTSFNTVIQG 189
           C P+ T++  +I+G
Sbjct: 535 CRPNETTYTVLIEG 548



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           +V  YS LI  LC   +++EA+ L   M  +G+T +  +Y+PLI   + ++GR   A+  
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA-AFCREGRLDVAIEF 386

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+T+  D    +I  Y+ V+  LC+ G+ ++A +   +L E G  P   +YN + + L  
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G  + A  ++++M   G  PD  ++N++I     +   D+A   L
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELL 492



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +CK  + D A++        G   +   Y+++ + L +      A+ +  +MV
Sbjct: 402 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMV 461

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + GI  + +TYN +I     +     A  LL  +   ++  ++  Y++V+ G C+  R E
Sbjct: 462 SNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 521

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           +A   LD +   G  P   TY +LI G+   G   EA +L
Sbjct: 522 DAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561



 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 34/113 (30%)

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVV---------------------------------- 146
           CR G + E+   L+ +  KG  P V+                                  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            YN LING CK   I +A ++L +M+ K   PD+ ++N +I     + + D A
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +  VY   + G+C+       ++ ++  ++ G   D++ Y+ +INGLC    + +A 
Sbjct: 285 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            + +  + +G   ++ T+N +I    ++    SA+ L++ +       +   Y+ V++GL
Sbjct: 345 VVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ +E  +  +++  KG  P  +TYNILI   CK   + EA  ++V+M + G  PD+
Sbjct: 405 CKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDT 464

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            SFNT+I GF    + D A    +K
Sbjct: 465 ISFNTLIHGFCRNGDLDGAYLLFQK 489



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+CK  ++  A       + +G   D F Y+++I+G C  + L+EA EL    +
Sbjct: 187 YNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAI 246

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   + VTY  LI+    +     A+ L    +    + ++ VY+ ++ GLCR G   
Sbjct: 247 FKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLIL 306

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + ++++ E G  P + TYNI+INGLCK G I +A  ++     KG  PD  +FNT+I
Sbjct: 307 HALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMI 366

Query: 188 QGFLVKNETDRASSFLKK 205
            G+  + + D A   +++
Sbjct: 367 DGYCKRLKLDSALQLVER 384



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 15  YGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + +RI   C        +R + S  ++G  +    Y +++ GL       +A  LFD+M+
Sbjct: 48  HTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEML 107

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + +  ++ T+N ++H   +K     + ALL  + +    +N    ++ I GLC  GR E
Sbjct: 108 RRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLE 167

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   ++ + +  + P VVTYN L+ GLCK   + EA + L +M  +GC PD  ++NT+I
Sbjct: 168 EAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTII 226

Query: 188 QGFLVKNETDRASSFLK 204
            G+  ++    A+  LK
Sbjct: 227 DGYCKRDMLQEATELLK 243



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           +   I+G CK  ++DSA++        GI  D   Y+S++NGLC   + KE  E F++M+
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G     +TYN LI +  +      A  ++  + +D    +   ++ +I G CR G  +
Sbjct: 422 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLD 481

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A     +L EKG      T+NILI     K  +  A+K+  +M  KG  PD  ++  ++
Sbjct: 482 GAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLV 541

Query: 188 QGFLVKNETDRASSFLKK 205
            G       DRA   L +
Sbjct: 542 DGSCKAANVDRAYVHLAE 559



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 94/172 (54%), Gaps = 3/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +++ +  DV  ++++++ LC    + E+  L  K++ +G++    T N  I    E 
Sbjct: 104 DEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEG 163

Query: 89  QGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                A+AL++++  D Y   ++  Y+ ++ GLC+  + +EA + L ++  +G +P   T
Sbjct: 164 GRLEEAVALVESM--DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFT 221

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN +I+G CK+ M+ EA +LL     KG  PD  ++ ++I G   + + +RA
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 15  YGIRINGMCKI---REIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+CK    +E++      I KG   +   Y+ LI   C  N+L+EA  +  +M 
Sbjct: 397 YNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMS 456

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +++N LIH          A  L Q L+   Y    + ++++I         +
Sbjct: 457 QDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ 516

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K   ++  KG  P + TY +L++G CK   +  A   L +M  KG  P   +F  V+
Sbjct: 517 MAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVL 576

Query: 188 QGFLVKNETDRASSFLK 204
               + +    A + + 
Sbjct: 577 NSLAMNHRVSEAVAIIH 593



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y I I   CKI +++ A        + G+  D   +++LI+G C    L  A  
Sbjct: 426 RPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYL 485

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF K+  +G +A   T+N LI     K     A  +   +    Y+ ++  Y +++DG C
Sbjct: 486 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSC 545

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +    + A   L ++  KG VP + T+  ++N L     + EA  ++  M   G  P+
Sbjct: 546 KAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  D   ++  I   C   R   A+ L   +  +G   + + Y  ++   +     
Sbjct: 37  LSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHG 96

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + A  L   + R     ++  ++ V+  LC+ G   E+   L ++ ++G+     T NI 
Sbjct: 97  YDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW 156

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I GLC+ G + EA  L+  M +    PD  ++NT+++G    ++   A+ +L++ M
Sbjct: 157 IRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMM 211



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ ++D L      ++A K   ++   G+ P   T+ + I   C  G    A +LL  
Sbjct: 11  PAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRS 70

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           + E+GC     ++ TV++G 
Sbjct: 71  LPERGCDVKPLAYCTVVRGL 90



 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  T   F      Y  ++N     +     I KG   D++ Y  L++G C    +  A 
Sbjct: 495 YSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAY 554

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
               +MV++G    + T+  +++          A+A++  + R      + V   V+D +
Sbjct: 555 VHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVR------MGVVPEVVDTI 608

Query: 121 CRVGRWEEARKKL--DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
               + E A  K+  ++L +KG +    TY +L  G+         D  L +   K    
Sbjct: 609 LSTDKKEIAAPKILVEELMKKGHI-SYPTYEVLHEGV--------RDNKLTRKARKWRLS 659

Query: 179 DSTSFNTVIQGF 190
           D    NT   G 
Sbjct: 660 DPDCMNTTTHGI 671


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVY--GIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
             E + K +  VY  GI I G C+  EI+ +        + G   +V +Y++LI+G C  
Sbjct: 152 FNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKR 211

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             +++A +LF +M   G+ A   TY  LIH  ++   +     + + ++ D    N+  Y
Sbjct: 212 GEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTY 271

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + V++  C+ GR ++A K  D++ E+G+   +VTYN LI GLC++    EA+K++ QMK 
Sbjct: 272 NCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKS 331

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P+  ++NT+I GF
Sbjct: 332 DGINPNLITYNTLIDGF 348



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L E  F  N  +Y   I+G CK  EI+ A        K G+  + + Y+ LI+GL    
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             K+  E+++KM   G+   L TYN +++ + +      A  L   +       NI  Y+
Sbjct: 248 IKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYN 307

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLCR  +  EA K +DQ+   G+ P ++TYN LI+G C  G + +A  L   +K +
Sbjct: 308 TLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR 367

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P   ++N ++ GF  K +T  A   +K+
Sbjct: 368 GLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 2/201 (0%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           F L    +     ++G+  NG+ K      +   + G+  +++ Y+ ++N  C   R K+
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKD 286

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +LFD+M  +G++  +VTYN LI     +     A  ++  ++ D    N+  Y+ +ID
Sbjct: 287 AFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLID 346

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C VG+  +A      L  +GL P +VTYNIL++G CKKG    A K++ +M+E+G  P
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++  +I  F   +  ++A
Sbjct: 407 SKITYTILIDTFARMDNMEKA 427



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+  + + A K        GI  ++  Y++LI+G C   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A+ L   + ++G++  LVTYN L+    +K     A  +++ +E    + +   Y+
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYT 412

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   R+   E+A +    + E GL P V TY++LI+G C KG + EA +L   M  K
Sbjct: 413 ILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAK 472

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              P+   +NT++ G+  +  + RA
Sbjct: 473 KLEPNKVIYNTMVLGYCKEGSSYRA 497



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C + ++  A+        +G+   +  Y+ L++G C       A ++ 
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVV 396

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            +M  +GI    +TY  LI      DN EK     A+ L   +E      ++  YS++I 
Sbjct: 397 KEMEERGIKPSKITYTILIDTFARMDNMEK-----AIQLRSPMEELGLTPDVHTYSVLIH 451

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G+  EA +    +  K L P  V YN ++ G CK+G    A +L  +M+EK   P
Sbjct: 452 GFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPP 511

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  S+  +I+    + ++  A   ++K
Sbjct: 512 NVASYRYMIEVLCKERKSKEAEGLVEK 538



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL  +    +   Y I ++G CK  +   A K       +GI      Y+ LI+     +
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMD 422

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A++L   M   G+T ++ TY+ LIH    K     A  L + +   K E N  +Y+
Sbjct: 423 NMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYN 482

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G    A +   ++ EK L P V +Y  +I  LCK+    EA+ L+ +M + 
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDT 542

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASS 201
           G  P  +  N + +    KN++  +S+
Sbjct: 543 GIDPSDSILNLISRA---KNDSHVSSN 566


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 2/181 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D   + G   D + Y+ L++G   + +L+ A   F +MV  G+    V+Y  LI D 
Sbjct: 464 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI-DG 522

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             K G+   A++LL+ +E      N+E Y+ VI+GL +  R+ EA K  D++ E+GL+P 
Sbjct: 523 HSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPN 582

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           V+TY  LI+GLC+ G    A K+   M+++ C P+  +++++I G   + + D A   LK
Sbjct: 583 VITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLK 642

Query: 205 K 205
           +
Sbjct: 643 E 643



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 12/212 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +DL+   F      Y   I G C+ R +D A       +K+G   +   YS+LINGLC  
Sbjct: 227 YDLSPDVF-----TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+ EA+++ ++M+ +GI   + TY   I      +    A+ L+  +++     N++ Y
Sbjct: 282 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 341

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL R+G+ E A     ++ ++GLVP  VTYN LIN LC  G    A K+   M+ 
Sbjct: 342 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 401

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   ++ ++N +I+G  +  + ++A    +K
Sbjct: 402 HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 433



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   I+G  K  ++D A+       + G   +V  Y+++INGL   N
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  EA ++ DKMV QG+   ++TY  LI D   + GR   A  +   +E+ K   N+  Y
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLI-DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 621

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I GLC+ G+ +EA   L ++  KGL P  VT+  LI+G    G I  A  LL +M +
Sbjct: 622 SSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 681

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC P+  +++ +++G 
Sbjct: 682 MGCKPNYRTYSVLLKGL 698



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G  K  +++SA       ++ G+  +   Y++LI+G     ++  A+ L  +M
Sbjct: 480 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G    + +YN +I +   K+ RFS A  +   +       N+  Y+ +IDGLCR GR
Sbjct: 540 EEMGCNPNVESYNAVI-NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A K    + ++  +P + TY+ LI GLC++G   EA+ LL +M+ KG  PD  +F +
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 658

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I GF+V    D A   L++
Sbjct: 659 LIDGFVVLGRIDHAFLLLRR 678



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN +C      +A+K        G   +   Y+ +I GLC    +++A+ LF
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G    +VTYN LI+    K    +A  LL  ++ +  E +   Y+ ++ G  + 
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E A     ++ E GL P  V+Y  LI+G  K G +  A  LL +M+E GC P+  S+
Sbjct: 492 GKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI G   +N    A     K
Sbjct: 552 NAVINGLSKENRFSEAEKICDK 573



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI   +  +++LIN L    +++EA  +  ++    ++ ++ TY  LI  +   +  
Sbjct: 190 LNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNL 249

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +   + ++  + N   YS +I+GLC  GR +EA   L+++ EKG+ P V TY + 
Sbjct: 250 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLP 309

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I  LC      EA +L+ +MK++GC P+  ++  +I G 
Sbjct: 310 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    ++  ++L+  L  F  ++ A  L+ +M+  GI   L+T+N LI +   K+G+   
Sbjct: 158 GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI-NILSKKGKVRE 216

Query: 95  MALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             L+ + +  +Y+L+ +V  Y+ +I G CR    + A    D++ ++G  P  VTY+ LI
Sbjct: 217 AELILS-QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLI 275

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           NGLC +G + EA  +L +M EKG  P   ++   I   
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 30/233 (12%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGI-CLDVFVYSSLINGLCTFN 54
           ++  +R   N + Y I ++G+CK       R +++ I+ G+   DV  Y+SL++  C+  
Sbjct: 341 EMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A  + D+M  +G      TYN L+   W       A  LL+ +    Y L+    +
Sbjct: 401 NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCN 460

Query: 115 LVIDGLCRV-----------GRWEEARKKLDQLSEKGL------------VPGVVTYNIL 151
           ++IDGLCR            G WEE    L +L    L            +P  +TY+IL
Sbjct: 461 IIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSIL 520

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I+ LCK+G   EA K L++M  K   PDS  ++T I G+    +T  A   L+
Sbjct: 521 ISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLR 573



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK----------KGIC-LDVFVYSSLINGLCTFN 54
           Q    N   +  RI+ +CK   +  A +           G+   D   +  +++G C   
Sbjct: 236 QGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAG 295

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA  L D M   G    + +YN  +     + GR   A  LL+ +  ++   N   Y
Sbjct: 296 FVDEARVLVDIMRCGGFLRRVESYNRWL-SGLVRNGRVGEAHELLREMAHERIHPNSYTY 354

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++ GLC+ G+  +AR+  + +    + P VVTY  L++  C KG I  A+++L +M +
Sbjct: 355 NIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQ 414

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC P+S ++N ++Q       T  A   L++
Sbjct: 415 KGCAPNSFTYNVLLQSLWRAGRTTEAERLLER 446



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 23/209 (11%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            H Y  + N     R +D   +KG   + F Y+ L+  L    R  EA  L ++M  +G 
Sbjct: 393 LHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGY 452

Query: 72  TAELVTYNPLIHD----------------NWEKQ----GRF--SAMALLQTLERDKYELN 109
           + +    N +I                   WE+     GR   S ++++      +  L 
Sbjct: 453 SLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLP 512

Query: 110 IEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
             + YS++I  LC+ GR++EA+KKL ++  K + P  V Y+  I+G CK G    A K+L
Sbjct: 513 DRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVL 572

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             M++KGC P + ++N +I+GF  K+++D
Sbjct: 573 RDMEKKGCNPSTRTYNLLIRGFEEKHKSD 601



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 2/134 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS+I +    D   YS LI+ LC   R  EA +   +M+ + I+ + V Y+  IH  + K
Sbjct: 503 DSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIH-GYCK 561

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G+ S A+ +L+ +E+     +   Y+L+I G     + +E  K + ++ EKG+ P V+T
Sbjct: 562 HGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLT 621

Query: 148 YNILINGLCKKGMI 161
           YN LI   C++GM+
Sbjct: 622 YNSLIKSFCQQGML 635



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+  ++GL    R+ EA EL  +M  + I     TYN ++    ++   F A  +   + 
Sbjct: 319 YNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIR 378

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 ++  Y+ ++   C  G    A + LD++++KG  P   TYN+L+  L + G   
Sbjct: 379 SGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTT 438

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EA++LL +M EKG   D+   N +I G    ++ D A
Sbjct: 439 EAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVA 475



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 24/171 (14%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-----GITAELVTYNPLIHDNWEKQGR-F 92
           DVF  + L+  LC   R++ A  +F+ M  +     GI A            + + GR  
Sbjct: 144 DVFTRNLLLRALCDAGRMELAQRVFEAMPVRNEFSFGILAR----------GYCRAGRSV 193

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ +L  +      +N+ V + V+ G C+ G  EEA + ++++  +GL P VVT+N  I
Sbjct: 194 DALKVLDGMP----SMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRI 249

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCF----PDSTSFNTVIQGFLVKNETDRA 199
           + LCK G +++A ++   M+E        PD  +F+ ++ GF      D A
Sbjct: 250 SALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEA 300



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 42/198 (21%)

Query: 15  YGIRINGMCKI-REIDS--AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +GI   G C+  R +D+   +     +++ V ++++ G C    ++EA  L ++M  QG+
Sbjct: 179 FGILARGYCRAGRSVDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGL 238

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VT+N           R SA                         LC+ GR  +A +
Sbjct: 239 APNVVTFN----------SRISA-------------------------LCKAGRVLDAYR 263

Query: 132 KLDQLSE---KGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
               + E    GL  P  VT++++++G C  G + EA  L+  M+  G      S+N  +
Sbjct: 264 IFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWL 323

Query: 188 QGFLVKNETDRASSFLKK 205
            G +       A   L++
Sbjct: 324 SGLVRNGRVGEAHELLRE 341


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK--IREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRL 56
           D+    F      Y + +   C      ID A++  + I   D   Y+++I+GLC   RL
Sbjct: 163 DMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRL 222

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEVYS 114
            EA +LF +M+A G    +VTY  LIH  W  ++  F  A+ L   + R     N+  YS
Sbjct: 223 PEARDLFAEMIANGTAPTVVTYTTLIH--WLAREACFDDALKLFDEMARRGIMPNVVTYS 280

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ GR   A + LD++ ++  +P  +TY+ +I+GLCK+G + +A ++L +M+ +
Sbjct: 281 SLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQ 340

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+  F  +I G         AS++L
Sbjct: 341 GRKPDAGLFGKLIVGLCDAGRALEASNYL 369



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   +  A       I  G    V  Y++LI+ L       +A++LFD+M 
Sbjct: 209 YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMA 268

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   +VTY+ LI D   K GR  SA+ LL  + +++   N   YS VIDGLC+ G  
Sbjct: 269 RRGIMPNVVTYSSLI-DGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCL 327

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            +A + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 328 GQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLH 387

Query: 184 ----NTVIQGFLVKNETDRA 199
               + V+     K E  RA
Sbjct: 388 GRINDAVVTALCSKGEVVRA 407



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 44/210 (20%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   ++GI  +V  YSSLI+GLC   R   AVEL D+MV +      +TY+ +I D   K
Sbjct: 265 DEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVI-DGLCK 323

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G    AM +L  +     + +  ++  +I GLC  GR  EA   LD+++  G+ P  +T
Sbjct: 324 EGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLT 383

Query: 148 YNI-------LINGLCKKGMIMEADKLLVQMKEKG------------------------- 175
           +++       ++  LC KG ++ A ++   M+ +G                         
Sbjct: 384 WSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAA 443

Query: 176 ----------CFPDSTSFNTVIQGFLVKNE 195
                     C P+  +++T+++ +  K +
Sbjct: 444 HVVRDMLSERCIPERETWDTIVRAYWSKKK 473



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ V+  L        AR  L  +   G  P   TYN+L+   C    +   D   V++ 
Sbjct: 141 YTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDA--VRVF 198

Query: 173 EKGCFPDSTSFNTVIQGF 190
                PD+ S+NTVI G 
Sbjct: 199 RNIPKPDACSYNTVIDGL 216


>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 347

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 42/201 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY I I G+CK + ID   +       KG C D + Y SLI+      ++ EA  L D M
Sbjct: 153 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM 212

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+   +V YN L                                   I+GLC+ G  
Sbjct: 213 INAGLVPNIVVYNAL-----------------------------------INGLCKSGNL 237

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + AR+  ++L+ KGL P VVTYN LI+G CK G   EA +L  +M+E+G  P S +++T+
Sbjct: 238 DRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTL 297

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           I G  ++ +++++   L + M
Sbjct: 298 IHGLYMEGKSEQSMGLLNEMM 318



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+       N  VY   ING+CK   +D A        +KG+   V  Y++LI+G C   
Sbjct: 211 DMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGG 270

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           R  EA+EL DKM  +GI    +TY+ LIH  + +     +M LL  +
Sbjct: 271 RTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSMGLLNEM 317



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 72/232 (31%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y SLI G C    + +A   + KM+ +GI   ++  + ++   + + G+     L+
Sbjct: 45  NVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLY-RHGKIDEANLI 103

Query: 99  --------------QTLERDKYEL----------------------NIEVYSLVIDGLCR 122
                          ++E  K +L                      N  VY++ I GLC+
Sbjct: 104 LHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPMSNNIVYNIAITGLCK 163

Query: 123 -----------------------------------VGRWEEARKKLDQLSEKGLVPGVVT 147
                                              VG+  EA    D +   GLVP +V 
Sbjct: 164 SKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVV 223

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN LINGLCK G +  A +L  ++  KG  P   ++NT+I G+     T  A
Sbjct: 224 YNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEA 275



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           ERD    + E+Y+ +I G+ R    ++    L ++  + L P VVTY  LI G C KGM+
Sbjct: 3   ERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMM 62

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A     +M +KG  P+    + ++       + D A+  L +
Sbjct: 63  DKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQ 106



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 51/104 (49%)

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI++    YN LI   +  +       LL  ++  +   N+  Y  +I G C  G  ++A
Sbjct: 6   GISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKA 65

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                ++ +KG+ P ++  + +++ L + G I EA+ +L Q+ +
Sbjct: 66  YNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIAD 109


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 10  GNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           G+ ++Y   IN  C+        + +D  +  G+  +   Y  LING C   +++ A  L
Sbjct: 280 GDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEML 339

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
              M  QG+    + +N +I D + ++G    A+ +   +E+   EL+I  Y+ +  GLC
Sbjct: 340 LADMQGQGVGLNQIIFNTMI-DGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLC 398

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           RV R +EA+  L  + E G+VP  VTY  LI+  CK G ++EA +L  +M EKG  P   
Sbjct: 399 RVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVV 458

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N +I G+  K     A  F K+
Sbjct: 459 TYNVMIDGYTKKGSIREAERFRKE 482



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  Q    N  ++   I+G C+   +D A+K        G+ LD++ Y++L  GLC  N
Sbjct: 342 DMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVN 401

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA  L   M+  G+    VTY  LI  + +      A  L + +       ++  Y+
Sbjct: 402 RLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYN 461

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDG  + G   EA +   ++ +KG VP V TY  L++G C  G +  A KL  +MK++
Sbjct: 462 VMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR 521

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++  +I G   +  ++ A
Sbjct: 522 GTEPNVVAYTALISGLAKEGRSEAA 546



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y     G+C++  +D A       I+ G+  +   Y++LI+  C    + EA  LF
Sbjct: 386 DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLF 445

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M  +G T  +VTYN +I D + K+G    A    + +E+  +  ++  Y+ ++ G C 
Sbjct: 446 REMAEKGATPSVVTYNVMI-DGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCV 504

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ + A K  +++ ++G  P VV Y  LI+GL K+G    A +L   M + G  PD + 
Sbjct: 505 NGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSL 564

Query: 183 FNTVIQGFLVKNETD 197
           ++ ++      N  D
Sbjct: 565 YSALVGSLHTDNRKD 579



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 35/191 (18%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S +++GLC   R+ +A  L D M   G++   + YN L+     ++       +L+ +E 
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 240

Query: 104 DKYELNIEVYSLVIDGL-----------------------------------CRVGRWEE 128
           +  E  +  Y++++D L                                   CR G    
Sbjct: 241 EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRR 300

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K LD+    G+ P   TY +LING CK G +  A+ LL  M+ +G   +   FNT+I 
Sbjct: 301 AAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID 360

Query: 189 GFLVKNETDRA 199
           G+  K   D A
Sbjct: 361 GYCRKGMVDDA 371



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIKK----------------GICLDVFVYSSLING 49
           +R   +   +G+ +N +C    +D  +++                GI   V  Y+ L++ 
Sbjct: 197 RRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDS 256

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           L T   + +   LF++M A  +  ++  Y  +I+          A  +L     +  E N
Sbjct: 257 LSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPN 316

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y ++I+G C++G+ E A   L  +  +G+    + +N +I+G C+KGM+ +A K+  
Sbjct: 317 ERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKA 376

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            M++ G   D  ++NT+  G    N  D A + L
Sbjct: 377 AMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 4/185 (2%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI +  S  K    +G   DV   S++I+GLC   R+  AV +F  M A+G+    V Y+
Sbjct: 285 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 344

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LIH   + +    A+ +L  +++     +   Y+++IDGLC+ G  E AR   D++ E 
Sbjct: 345 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA 404

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P V TYNIL++G CK G    A  +   M    C P+  ++ T+I G   + +  +A
Sbjct: 405 GCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKA 464

Query: 200 SSFLK 204
           S + +
Sbjct: 465 SLYFQ 469



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y   ++ + K ++I  A+         G    +  Y++L+NGLC   RL+EA++L 
Sbjct: 164 DIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 223

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+V  G T ++VTY  LI    +++  F A  L + +      L+   Y+ +I GL + 
Sbjct: 224 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA 283

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A      ++ +G VP VVT + +I+GLCK G I  A ++   M+ +G  P+   +
Sbjct: 284 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 343

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           + +I G     + D A   L +
Sbjct: 344 SALIHGLCKARKMDCALEMLAQ 365



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 12/207 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEA 59
           F  +   + + I G C  RE + A           G+   +  ++ +++GLC   ++  A
Sbjct: 90  FLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAA 149

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEVYSLVI 117
           ++ F+     G T ++ TY  ++  +W  + +    A+AL++ +  +     I  Y+ ++
Sbjct: 150 MDHFETTTTNGCTIDIHTYTAIV--DWLAKNKKIQDAVALMEKITANGCTPTIATYNALL 207

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +GLC++GR EEA   L ++ + G  P VVTY  LI+GL K+    EA KL  +M  +G  
Sbjct: 208 NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLV 267

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
            D+  +  +I+G L   +  +ASS  K
Sbjct: 268 LDTVCYTALIRGLLQAGKIPQASSVYK 294



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   + + ++G+CK       +   ++    G  +D+  Y+++++ L    ++++AV L 
Sbjct: 129 SLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALM 188

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +K+ A G T  + TYN L+ +   K GR   A+ LL+ +  +    ++  Y+ +IDGL +
Sbjct: 189 EKITANGCTPTIATYNALL-NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 247

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R  EA K   +++ +GLV   V Y  LI GL + G I +A  +   M  +GC PD  +
Sbjct: 248 EKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 183 FNTVIQGF 190
            +T+I G 
Sbjct: 308 LSTMIDGL 315



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G+CK R++D A+      KK  C  D   Y+ LI+GLC    ++ A   FD+M
Sbjct: 342 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 401

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++ TYN L+    +     +A  +   +       N+  Y  +I GLC+  + 
Sbjct: 402 LEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQL 461

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A      + E+G  P    Y+ L++GLCK G +     L  +M+  G   +S +   +
Sbjct: 462 TKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG-VANSQTRTRL 520

Query: 187 IQGFLVKNETDRASSFL 203
           I      N  D A S  
Sbjct: 521 IFHLCKANRVDEAVSLF 537



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN 54
           ++ E   K + + Y I ++G CK    D+A      +    C  +V  Y +LI+GLC   
Sbjct: 400 EMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRR 459

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVY 113
           +L +A   F  M  +G   +   Y+ L+ D   K G+     +L   +ER     N +  
Sbjct: 460 QLTKASLYFQHMKERGCPPDSFVYSSLV-DGLCKSGKLEGGCMLFDEMERSGVA-NSQTR 517

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           + +I  LC+  R +EA    + + ++G+ P    YN +I+ L K   +
Sbjct: 518 TRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISTLIKSAKV 564


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CKI +   A +        G   DV  Y+ LI+G+C+  R  +A +L   MV +G 
Sbjct: 126 IRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGC 185

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +  +VT+N LI+    K     A+ +L+ + +     N   Y+ ++ G C+  + E A +
Sbjct: 186 SPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIE 245

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L +++ +G  P +VTYN L+  LCK G +  A +LL Q+  KGC P   ++NTVI G  
Sbjct: 246 YLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 305

Query: 192 VKNETDRASSFL 203
              +TD+A+  L
Sbjct: 306 KVGKTDQAAKLL 317



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+  +    +   + I IN +C+   +  AI       K G   +   Y+ L++G C   
Sbjct: 179 DMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEK 238

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+E   KM ++G   ++VTYN L+    +     +A+ LL  L        +  Y+
Sbjct: 239 KMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYN 298

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGL +VG+ ++A K LD++  KGL P ++TY+ L+ GL ++G + EA K    ++  
Sbjct: 299 TVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVL 358

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  P++ ++N ++ G     +TDRA  FL
Sbjct: 359 GVKPNAITYNAIMLGLCKARKTDRAIDFL 387



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 13/196 (6%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           GN HV    I+ +    EI+S             ++ ++ L     L+E     + MV +
Sbjct: 67  GNGHVSLSPIHSLTNFEEIES-------------NNNLSKLVRNGELEEGFRFLESMVYR 113

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G   +++    LI    +      A  +++ +E      ++  Y+++I G+C  GRW +A
Sbjct: 114 GDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDA 173

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L  +  +G  P VVT+NILIN LC+KG++  A  +L +M + GC P+S S+N ++ G
Sbjct: 174 EKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHG 233

Query: 190 FLVKNETDRASSFLKK 205
           F  + + +RA  +L K
Sbjct: 234 FCKEKKMERAIEYLGK 249



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++G CK ++++ AI+       +G   D+  Y++L+  LC   ++  AVEL +++ 
Sbjct: 227 YNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLS 286

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G +  L+TYN +I D   K G+   A  LL  +     + +I  YS ++ GL R G+ 
Sbjct: 287 SKGCSPVLITYNTVI-DGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKV 345

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K    L   G+ P  +TYN ++ GLCK      A   L  M ++GC P   S+  +
Sbjct: 346 DEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTIL 405

Query: 187 IQGF 190
           I+G 
Sbjct: 406 IEGL 409



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++S + +G   D+   +SLI G C   + ++A  + + +   G   +++TYN LI   
Sbjct: 105 RFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGM 164

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A  LL  + R     ++  ++++I+ LCR G    A   L+++ + G  P  
Sbjct: 165 CSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNS 224

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++YN L++G CK+  +  A + L +M  +GC+PD  ++NT++       + D A   L +
Sbjct: 225 LSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQ 284



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +  +CK  ++D+A++       KG    +  Y+++I+GL    +  +A +L D+M
Sbjct: 261 TYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+G+  +++TY+ L+     ++G+   A+     LE    + N   Y+ ++ GLC+  +
Sbjct: 321 RAKGLKPDIITYSSLV-GGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARK 379

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L  + ++G  P   +Y ILI GL  +G+  EA +LL ++  +G    S++   
Sbjct: 380 TDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKV 439

Query: 186 VIQ 188
            ++
Sbjct: 440 AVR 442


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRLKEA 59
           LT+  F      +   ++G+C    +  A+     +C  +V  +++L+NGLC   R+ EA
Sbjct: 41  LTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 100

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVID 118
           V L D+MV  G+    +TY  ++    +     SA+ LL+ +E   + + ++ +YS +ID
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR  +A+    ++ +KG+ P +VTY+ +ING C  G   EA +LL +M  +   P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  +F+ +I   + + + + A   L++
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQE 247



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 8/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
            DL  Q  K N   +   +NG+C+       +  +D  ++ G+  +   Y ++++G+C  
Sbjct: 70  LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 54  NRLKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
                A+ L  KM     I  ++V Y+ +I   W+      A  L   ++      +I  
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I+G C  G+W EA++ L ++  + + P VVT++ LIN L K+G +  A  LL +M 
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 173 EKGCFPDSTSFNTVIQGF 190
             G  P+  + NT++ G 
Sbjct: 250 SSGVCPNVVTCNTLLDGL 267



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E   + N   YG  ++GMCK+ +  SA+           I  DV +YS++I+GL    
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDG 166

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A  LF +M  +GI  ++VTY+ +I + +   G++S A  LLQ +   K   ++  +
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMI-NGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I+ L + G    A+  L ++   G+ P VVT N L++GLC  G + +A ++   M++
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285

Query: 174 K-----------GCFPDSTSFNTVIQGFL 191
                       G  PD  ++N +I G +
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLI 314



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 32  IKKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH------ 83
           IK G  I  D++ ++ LI   C+ ++L  A+  F K+   G    LVT+N L+H      
Sbjct: 5   IKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVED 64

Query: 84  ------------------------DNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVID 118
                                   +   ++GR   A+ALL  +  D  + N   Y  ++D
Sbjct: 65  RVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 119 GLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           G+C++G    A   L ++ E   + P VV Y+ +I+GL K G   +A  L ++M++KG F
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIF 184

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  +++ +I GF    +   A   L++
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQE 212



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + VTY+ +I +   KQ R   
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI-NGLCKQSRLDE 356

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  NI  ++ +I G C+ G  ++  +   ++  +G+V   +TY  LI 
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  +  +  +M   G +PD+ +   ++ G   K E  +A + L++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEE 468



 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 18/136 (13%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A +       K    ++  +++LI G C    + + +ELF +M
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ-TLERDKYELNIEVYSLVIDGLCRVG 124
             +GI A  +TY  LI   + K G  + ++ + Q  +    Y   I + +++       G
Sbjct: 400 GRRGIVANAITYITLIR-GFRKVGNINGSLDIFQEMISSGVYPDTITIRNML------TG 452

Query: 125 RW--EEARKKLDQLSE 138
            W  EE +K L  L E
Sbjct: 453 LWSKEELKKALAMLEE 468


>gi|242078465|ref|XP_002444001.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
 gi|241940351|gb|EES13496.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
          Length = 824

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 27/212 (12%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+ R++ +A       + +G+  DV VY+ L+NG C   RL+EA +LF +M+
Sbjct: 617 YSKLISAYCQKRDMHNAHLWFLDMVDRGLS-DVIVYTVLMNGYCKVGRLQEACDLFVQMI 675

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  ++V Y  L+        H  W+           R     LL +++  + E ++ 
Sbjct: 676 NLGIKPDVVAYTVLLDGHIKEALHQGWQGIAKEWRSFRLRTKHKTLLSSMKDMEIEPDVT 735

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+    +EAR   D++  KGL P V  Y  LING C +G I +A+ LL +M
Sbjct: 736 CYTVLIDGHCKTEYLDEARGLFDEMLAKGLTPDVYAYTALINGYCSQGEIAKAEDLLQEM 795

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            + G  PD  +F+ + Q  L      +A S+L
Sbjct: 796 TDNGMKPDVLTFSVLHQRTL---RHRKAHSYL 824



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++R       Y + I+G+CK  +++ A        + G   D++ YS LI   C   
Sbjct: 289 EIIQERVAVESIAYNMVIDGLCKEMKLEEAEKVLEIKTRHGSTPDLYGYSYLIRTYCKTG 348

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIEVY 113
            L +A    + MV+ GI         L+    +K G  S + +     RD    L+  +Y
Sbjct: 349 NLGKAWHHIEAMVSHGIEINCYIVGYLLQ-CLKKLGMVSEVIVYFQKFRDLGLHLDGVLY 407

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++ +D  C++G   EA K L+++   GLVP  + Y  LING C KG    A ++  QM +
Sbjct: 408 NITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLK 467

Query: 174 KGCFPDSTSFNTVIQGF 190
               PD  ++N +  G+
Sbjct: 468 ANIKPDVVTYNILASGY 484



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------------IKKGICLDVFVYSSLING 49
           + E   K + H Y   I G+C+  + D A             I++ + ++   Y+ +I+G
Sbjct: 249 MIEMGVKPDVHGYSSFIIGLCECGKYDLAYNMVSRYAVLHEIIQERVAVESIAYNMVIDG 308

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +L+EA ++ +     G T +L  Y+ LI    +      A   ++ +     E+N
Sbjct: 309 LCKEMKLEEAEKVLEIKTRHGSTPDLYGYSYLIRTYCKTGNLGKAWHHIEAMVSHGIEIN 368

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             +   ++  L ++G   E      +  + GL    V YNI ++  CK G + EA KLL 
Sbjct: 369 CYIVGYLLQCLKKLGMVSEVIVYFQKFRDLGLHLDGVLYNITMDAYCKLGNMNEAVKLLN 428

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M   G  PD   +  +I G+ +K ET+ A
Sbjct: 429 EMMAGGLVPDKIHYTCLINGYCLKGETENA 458



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK+  ++ A+K        G+  D   Y+ LING C     + A ++F++M
Sbjct: 406 LYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQM 465

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   I  ++VTYN L               LL+ +     E N   Y + I   CR G  
Sbjct: 466 LKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQGLEPNSLTYGVAIACFCREGNL 525

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    + L EKG+    V Y+ ++ G    G    A  L +++ ++G   D+ S + +
Sbjct: 526 SEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWTDHAYTLFLRVAKQGNMVDNLSCSKL 585

Query: 187 IQGFLVKNETDRASS----FLKKN 206
           I    +  + + AS+     L+KN
Sbjct: 586 INSLCIDKKVEEASTVCSMMLEKN 609



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 86/169 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD  +Y+  ++  C    + EAV+L ++M+A G+  + + Y  LI+    K    +A
Sbjct: 399 GLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENA 458

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + + +   + ++  Y+++  G  R G   +    L+ + ++GL P  +TY + I  
Sbjct: 459 WQVFEQMLKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQGLEPNSLTYGVAIAC 518

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C++G + EA+ L   ++EKG       +++++ G+L    TD A +  
Sbjct: 519 FCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWTDHAYTLF 567



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING C   E ++A       +K  I  DV  Y+ L +G      + +  +L + MV
Sbjct: 442 YTCLINGYCLKGETENAWQVFEQMLKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMV 501

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLCRVGRW 126
            QG+    +TY   I   + ++G  S   +L  +  +K   NIEV YS ++ G    G  
Sbjct: 502 DQGLEPNSLTYGVAI-ACFCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWT 560

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A     +++++G +   ++ + LIN LC    + EA  +   M EK   PD  S++ +
Sbjct: 561 DHAYTLFLRVAKQGNMVDNLSCSKLINSLCIDKKVEEASTVCSMMLEKNAVPDVISYSKL 620

Query: 187 IQGFLVKNETDRA 199
           I  +  K +   A
Sbjct: 621 ISAYCQKRDMHNA 633


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +LTE+    + H YG  I+G+CK+ E+ +A         KG+ +   V+++LING C   
Sbjct: 335 ELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKG 394

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA  ++D M  +G  A++ T N  I   + +  R+  A   L  +      L+   Y
Sbjct: 395 MIDEASMIYDVMEKKGFQADVFTCNT-IASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSY 453

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +ID  C+ G  EEA++   ++S K + P  +TYN++I   CK+G + EA KL   MK 
Sbjct: 454 TNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKA 513

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PDS ++ ++I G  + +  D A
Sbjct: 514 NGMDPDSYTYTSLIHGECIADNVDEA 539



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 7/206 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K   + Y   IN   K R+            K G+  +   Y+ LI       ++ +  +
Sbjct: 237 KPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEK 296

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LFD+M  +GI +++  Y  LI  N  K     A  L   L       +   Y  +IDG+C
Sbjct: 297 LFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVC 356

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +VG    A   ++++  KG+    V +N LING C+KGMI EA  +   M++KG   D  
Sbjct: 357 KVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVF 416

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           + NT+   F      D A  +L + M
Sbjct: 417 TCNTIASCFNRLKRYDEAKQWLFRMM 442



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 41/211 (19%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +DS +K    + V+  + ++ GLC    ++++ +L  +   +GI  E  TYN +I + 
Sbjct: 195 RMVDSGVK----ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTII-NA 249

Query: 86  WEKQGRFSAM-ALLQTLERDKY-----------------------------------ELN 109
           + K   FS +  +L+ +++D                                     E +
Sbjct: 250 YLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESD 309

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I VY+ +I   CR G  + A    D+L+EKGL+P   TY  LI+G+CK G +  A+ L+ 
Sbjct: 310 IHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMN 369

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +M+ KG       FNT+I G+  K   D AS
Sbjct: 370 EMQSKGVNITQVVFNTLINGYCRKGMIDEAS 400



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           G+ L    Y++LI+  C    ++EA  LF +M ++ +    +TYN +I+  + KQG+   
Sbjct: 445 GVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIY-AYCKQGKVKE 503

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L   ++ +  + +   Y+ +I G C     +EA +   ++  KGL    VTY ++I+
Sbjct: 504 ARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMIS 563

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           GL K G   EA  L  ++K KG   D+  +  +I
Sbjct: 564 GLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALI 597



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K +  +   Y+ +I   C   ++KEA +L+  M A G+  +  TY  LIH          
Sbjct: 479 KEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDE 538

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM L   +     + N   Y+++I GL + G+ +EA    D++  KG       Y  LI 
Sbjct: 539 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIG 598

Query: 154 GL 155
            +
Sbjct: 599 SM 600


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRLKEA 59
           LT+  F      +   ++G+C    +  A+     +C  +V  +++L+NGLC   R+ EA
Sbjct: 41  LTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 100

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVID 118
           V L D+MV  G+    +TY  ++    +     SA+ LL+ +E   + + ++ +YS +ID
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GL + GR  +A+    ++ +KG+ P +VTY+ +ING C  G   EA +LL +M  +   P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  +F+ +I   + + + + A   L++
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQE 247



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 8/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
            DL  Q  K N   +   +NG+C+       +  +D  ++ G+  +   Y ++++G+C  
Sbjct: 70  LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 54  NRLKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
                A+ L  KM     I  ++V Y+ +I   W+      A  L   ++      +I  
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I+G C  G+W EA++ L ++  + + P VVT++ LIN L K+G +  A  LL +M 
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 173 EKGCFPDSTSFNTVIQGF 190
             G  P+  + NT++ G 
Sbjct: 250 SSGVCPNVVTCNTLLDGL 267



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
           + E   + N   YG  ++GMCK+ +  SA+           I  DV +YS++I+GL    
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDG 166

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A  LF +M  +GI  ++VTY+ +I + +   G++S A  LLQ +   K   ++  +
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMI-NGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I+ L + G    A+  L ++   G+ P VVT N L++GLC  G + +A ++   M++
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285

Query: 174 K-----------GCFPDSTSFNTVIQGFL 191
                       G  PD  ++N +I G +
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLI 314



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 32  IKKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH------ 83
           IK G  I  D++ ++ LI   C+ ++L  A+  F K+   G    LVT+N L+H      
Sbjct: 5   IKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVED 64

Query: 84  ------------------------DNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVID 118
                                   +   ++GR   A+ALL  +  D  + N   Y  ++D
Sbjct: 65  RVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 119 GLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           G+C++G    A   L ++ E   + P VV Y+ +I+GL K G   +A  L ++M++KG F
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIF 184

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  +++ +I GF    +   A   L++
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQE 212



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + VTY+ +I +   KQ R   
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI-NGLCKQSRLDE 356

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  NI  ++ +I G C+ G  ++  +   ++  +G+V   +TY  LI 
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  K G I  +  +  +M   G +PD+ +   ++ G   K E  RA + L++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEE 468



 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A +       K    ++  +++LI G C    + + +ELF +M
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 67  VAQGITAELVTYNPLI 82
             +GI A  +TY  LI
Sbjct: 400 GRRGIVANAITYITLI 415


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 43/249 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  + ++G+   Y   I+G C+++EID A +            D+F Y  LI GLC   
Sbjct: 282 DMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAK 341

Query: 55  RLKEA------------------------------------VELFDKMVAQGITAELVTY 78
           RL EA                                     +LF +MV  G   ++VTY
Sbjct: 342 RLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTY 401

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           + LI           A + L+ +   K    + VYS VI GLCR G  + A    D +  
Sbjct: 402 STLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVA 461

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            G  P +  YN LI GLCK G + +A   + +M E+GC PD  ++ T+I G    + TD 
Sbjct: 462 NGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDE 521

Query: 199 ASSFLKKNM 207
           A     +++
Sbjct: 522 ACDLYVRSL 530



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 4/199 (2%)

Query: 11  NFHVYGIRINGMCK---IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           N   Y + ING+ K   + E +  +++     +  Y+S+I G C    + +A  L + M 
Sbjct: 225 NNWTYTVVINGLVKAGKVAEAERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMK 284

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   + +TYN LIH +   Q    A  LL+ ++ + +  +I  Y ++I GLCR  R  
Sbjct: 285 RKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLS 344

Query: 128 EARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EAR  L  L +E    P VV+YN LI+G  K   + +A +L ++M   G  PD  +++T+
Sbjct: 345 EARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTL 404

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G         A S+L++
Sbjct: 405 IRGLCNAGRASEAHSYLEE 423



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K   ++ A       +  G   DV  YS+LI GLC   R  EA    
Sbjct: 362 NVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYL 421

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++MV + I  ++  Y+ +I          +A  +  ++  +  + N+ VY+ +I GLC+ 
Sbjct: 422 EEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKT 481

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A+ ++ +++E+G  P  VTY  LI GLC+     EA  L V+  E+G     TS 
Sbjct: 482 GRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSC 541

Query: 184 NTVIQGFLVKNETDR 198
           N VI       +  R
Sbjct: 542 NVVIASLRCLEQAQR 556



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 42/240 (17%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRL 56
           T Q F+   H Y      + +  + + A +       + +  D   Y  LI GLC F +L
Sbjct: 82  TRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKL 141

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHD------------NWEKQGRFSAMA-------- 96
           K A  L+++MV +G+   ++T   L++              +EK       A        
Sbjct: 142 KLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDG 201

Query: 97  LLQTLERDKYELNIE-----------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           L + +  D+     E            Y++VI+GL + G+  EA + L ++     VP +
Sbjct: 202 LFRAIRVDEACYYFEEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMP----VPTL 257

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             Y  +I G CK G + +A  LL  MK KG   D+ ++NT+I G     E DRA   L++
Sbjct: 258 ANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEE 317



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 36/202 (17%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            F Y+++I  LC  N L EA +L + M+  GI  +  T + L+     +     AMA L+
Sbjct: 570 AFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLE 629

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGR----------------------W----------- 126
            + R   + ++  YS +++ L + G+                      W           
Sbjct: 630 EMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQ 689

Query: 127 ---EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              EEAR  L +L  K  +  +V YN L+ GL +   +    +LL +MK      +  +F
Sbjct: 690 DQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATF 749

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +IQGF    +TDRA   L +
Sbjct: 750 NILIQGFCRLGQTDRAVRVLSE 771



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 30/214 (14%)

Query: 9   KGNFHVYGIRINGMCKI-REIDSAIK------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  VY   I G+CK  R  D+ ++      +G   D   Y +LI GLC ++R  EA +
Sbjct: 465 QPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACD 524

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--------- 112
           L+ + + QGI     + N +I             A L+ LE+ +  L + +         
Sbjct: 525 LYVRSLEQGIEISETSCNVVI-------------ASLRCLEQAQRVLRVVLATGNSPTAF 571

Query: 113 -YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ VI+ LC+     EAR+ L+ +   G+ P   T + L+  +C++   + A   L +M
Sbjct: 572 FYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEM 631

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              G  P   +++T++       +   A   L++
Sbjct: 632 VRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRR 665



 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y  LI      ++++EA  +  ++ ++     +V YN L+   +  +       LL
Sbjct: 675 DELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELL 734

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++R+++ +N   ++++I G CR+G+ + A + L ++ +K L P       L++ L + 
Sbjct: 735 REMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM-KKVLTPSAAIIKFLVDELARA 793

Query: 159 GMIMEADKLL 168
               E+  L+
Sbjct: 794 EREQESKDLV 803


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 11/213 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + + + K +  +Y + I  +CKI ++D A       ++ G   D   Y+ L++ L    +
Sbjct: 113 MIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACK 172

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            ++  ++F++M+++G + ELVTY  ++ + + K GR   A++L++ L+      +  +YS
Sbjct: 173 WEQGHQIFEEMLSKGHSPELVTYATVV-NGYCKAGRIDQALSLMRRLKGTGRSPSGSLYS 231

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+  R +EAR+  +  +  G V  V+ Y   I+GLCK G + EA  + V+M E 
Sbjct: 232 TLIDGLCKHDRHDEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEA 289

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           GC PD  S+N +I      N    A   + + M
Sbjct: 290 GCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM 322



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%)

Query: 14  VYGIRINGMCKIREIDSA-----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           +Y   I+G+CK    D A     +  G   DV VY+S I+GLC   +L EA  +  KM+ 
Sbjct: 229 LYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIE 288

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            G   + V+YN +I+   +      A  L+ Q +ER K    + V ++++DGLC+  R E
Sbjct: 289 AGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMER-KCMPGVPVCTVLVDGLCKSRRVE 347

Query: 128 EARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EA   L+++ E G   P VVTY+ +I+GLCK   + +A  +L +M+  GC PD  ++  +
Sbjct: 348 EACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAI 407

Query: 187 IQGFLVKNETDRASSFLKK 205
           I  F      D A    ++
Sbjct: 408 IDAFCKVGRLDEARELFQR 426



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 10/200 (5%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I  +CK   +       D A+++     V V + L++GLC   R++EA  + ++M+
Sbjct: 298 YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERML 357

Query: 68  AQGITA-ELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             G  A  +VTY+ +I D   K  R   A  +LQ + R     ++  Y+ +ID  C+VGR
Sbjct: 358 ETGDRAPSVVTYSAVI-DGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGR 416

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EAR+   ++ E+G    VV YNILI G C+   + EA  ++ +M  +G  P+  S +T
Sbjct: 417 LDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLST 476

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G   ++  + A   ++K
Sbjct: 477 IVDGLCKESRVEEARLLMEK 496



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 11/185 (5%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKG-ICLDVFVYSSLINGLCTFNRL 56
           E++      V  + ++G+CK R ++ A       ++ G     V  YS++I+GLC  +RL
Sbjct: 323 ERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRL 382

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
            +A  +  KM   G   ++VTY  +I D + K GR   A  L Q +      L++  Y++
Sbjct: 383 DDAYVVLQKMRRAGCVPDVVTYTAII-DAFCKVGRLDEARELFQRMHERGCALDVVAYNI 441

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G CR  + +EA   +++++ +G+ P VV+ + +++GLCK+  + EA  L+ +M  + 
Sbjct: 442 LIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFES 501

Query: 176 CFPDS 180
             PDS
Sbjct: 502 -LPDS 505



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D F Y +LI G C   ++ +AV L  +M A GIT  +VT+  LI    E      A+ + 
Sbjct: 51  DDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIF 110

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +   K + +  +Y++VI  LC++ + + A    +++ + G +P  VTY +L++ L K 
Sbjct: 111 HQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKA 170

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               +  ++  +M  KG  P+  ++ TV+ G+      D+A S +++
Sbjct: 171 CKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRR 217



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           P   TY  LI G CK   I +A  LL +MK  G  P   +F ++I+     N TD+A
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKA 106


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   +G  I+ +CK+  +D A       I +G+  ++FV+SSL+ GLCT  +
Sbjct: 362 MRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGK 421

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            ++A ELF +++ QGI  + V +N L+  N   +GR   A  L+  + R     N+  Y+
Sbjct: 422 WEKAEELFFEVLDQGICVDAVFFNTLMC-NLCNEGRVMEAQRLIDLMIRVGVRPNVISYN 480

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C  GR +EA K LD +   GL P   TY IL+ G CK   + +A  L  +M  K
Sbjct: 481 TLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMK 540

Query: 175 GCFPDSTSFNTVIQGFL 191
           G  P   ++NT++ G  
Sbjct: 541 GVTPVVATYNTILHGLF 557



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y I + G CK R +D A       + KG+   V  Y+++++GL    R  EA 
Sbjct: 507 LKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEAN 566

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+  M+      ++ TYN +++   +      A  + + L     +L+   ++++I  L
Sbjct: 567 ELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGAL 626

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR E+A      +S  GLVP VVTY ++   L ++G + E D L   M++ G  P+S
Sbjct: 627 LKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNS 686

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
              N +++  L + +  RA  +L K
Sbjct: 687 HMLNALVRRLLHRGDISRAGVYLYK 711



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 39/222 (17%)

Query: 20  NGMCKIREI--DSAIKKGICLDVFVYSSLINGLCT------------------------- 52
           NG C+   +  DS  +KGI  DV +Y+ L++G  T                         
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338

Query: 53  FN----------RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL-LQTL 101
           FN           ++EA+ +F+KM  QG++ ++V++  LI D   K GR     L    +
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALI-DALCKLGRVDDAVLQFNQM 397

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             +    NI V+S ++ GLC VG+WE+A +   ++ ++G+    V +N L+  LC +G +
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           MEA +L+  M   G  P+  S+NT++ G  +    D A+  L
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL 499



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 19  INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           + G+C  + +D A         + G   DV  Y+++ING     ++++A  LF +M+ QG
Sbjct: 132 LKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQG 191

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I   +VTY  +I    + Q    A  + Q +     + +   Y+ +I G    G+W+E  
Sbjct: 192 IPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVV 251

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L+++S  GL P  +TY +L++ LCK G   EA      M  KG  PD   +  ++ G+
Sbjct: 252 QMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGY 311

Query: 191 LVKNETDRASSFL 203
             K       SFL
Sbjct: 312 ATKGALSEMHSFL 324



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING  +  +++ A       + +GI  +V  Y+++I+GLC    +  A  +F +M
Sbjct: 163 AYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQM 222

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+  +  TYN LIH           + +L+ +     E +   Y+L++D LC+ GR 
Sbjct: 223 IDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRC 282

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EAR   D +  KG+ P V  Y IL++G   KG + E    L  M   G  P+   FN +
Sbjct: 283 REARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIM 342

Query: 187 IQGFLVKNETDRASSFLKK 205
              +  K   + A     K
Sbjct: 343 FCAYAKKAMIEEAMHIFNK 361



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 9/207 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ +Q    N   Y   I+G+CK + +D A       I +G+  D   Y+ LI+G  + 
Sbjct: 185 LEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLST 244

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
            + KE V++ ++M   G+  + +TY  L+ D   K GR   A     ++ R   + ++ +
Sbjct: 245 GKWKEVVQMLEEMSTHGLEPDCITY-ALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAI 303

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++ G    G   E    LD +   G+ P    +NI+     KK MI EA  +  +M+
Sbjct: 304 YAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMR 363

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++G  PD  SF  +I         D A
Sbjct: 364 QQGLSPDVVSFGALIDALCKLGRVDDA 390



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           RE  S +    C     YS LI   C   RL+     F  ++  G    ++  + L+   
Sbjct: 80  RECSSKVAPNAC----TYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGL 135

Query: 86  WEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
            + +    A   LL  +       ++  Y+ VI+G  R G+ E+A     ++ ++G+ P 
Sbjct: 136 CDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPN 195

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           VVTY  +I+GLCK  ++  A  +  QM ++G  PD+ ++N +I G+L
Sbjct: 196 VVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYL 242



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 2/176 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++     G+  D   Y+ L++ LC   R +EA   FD M  +GI  ++  Y  L+H 
Sbjct: 251 VQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLH- 309

Query: 85  NWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            +  +G  S M + L  +  +    N  +++++     +    EEA    +++ ++GL P
Sbjct: 310 GYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSP 369

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            VV++  LI+ LCK G + +A     QM  +G  P+   F++++ G     + ++A
Sbjct: 370 DVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKA 425



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA----MALLQTLERD---KYEL 108
           L EA++LFD+++     A +  +N L+     + G  SA    ++L   + R+   K   
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLL-TVVSRAGCSSASERVVSLFTRMARECSSKVAP 88

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKL 167
           N   YS++I   CR+GR E        + + G    V+  + L+ GLC    + EA D L
Sbjct: 89  NACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL 148

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           L++M E GC PD  ++NTVI GF  + + ++A +   + M
Sbjct: 149 LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMM 188



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 57  KEAVELFDKMV---AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
           +  V LF +M    +  +     TY+ LI   + + GR     A    + +  + +N+ V
Sbjct: 69  ERVVSLFTRMARECSSKVAPNACTYSILI-GCFCRMGRLEHGFAAFGLILKTGWRVNVIV 127

Query: 113 YSLVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            S ++ GLC   R +EA    L ++SE G  P VV YN +ING  ++G + +A  L ++M
Sbjct: 128 ISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEM 187

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++G  P+  ++ TVI G       DRA    ++
Sbjct: 188 MDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQ 221



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTF 53
            ++   R K + + Y I +NG+CK   +D A K  + +C     LD   ++ +I  L   
Sbjct: 570 LNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKG 629

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEV 112
            R ++A++LF  + A G+  ++VTY  LI +N  ++G       L   +E+     N  +
Sbjct: 630 GRKEDAMDLFATISAYGLVPDVVTYR-LIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHM 688

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            + ++  L   G    A   L +L EK       T ++LI+
Sbjct: 689 LNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLIS 729


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 8/173 (4%)

Query: 39  DVFVYSSLINGL--------CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           DV  Y++++NG          T   + +A+E+ + MV  G+  + +TYN ++H       
Sbjct: 200 DVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 259

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+  L+ +  D  E N+  YS +++ LC+ GR  EARK  D ++++GL P + TY  
Sbjct: 260 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 319

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           L+ G CK+G ++E++KL   M   G  PD  ++NT+I G  +  + D A+  L
Sbjct: 320 LLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 372



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 42/237 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+G C   ++D A K        G+  D+  Y +LING C  +R+ +A+ 
Sbjct: 346 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 405

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +MV+ G++  ++TYN ++   +  +   +A  L  ++ +   +L +  Y++++ GLC
Sbjct: 406 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 465

Query: 122 R-----------------------------------VGRWEEARKKLDQLSEKGLVPGVV 146
           +                                    GR +EA+      S  GLVP V 
Sbjct: 466 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 525

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           TY+++   L ++G + E D L + M+E GC  DS   N++++  L + +  RA ++L
Sbjct: 526 TYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 582



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +++ +K G+  D   Y+S+++G C+  + KEA+    KM + G+   +VTY+ L+ +   
Sbjct: 232 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM-NYLC 290

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K GR + A  +  ++ +   E +I  Y  ++ G C+ GR  E+ K  D +   G+ P ++
Sbjct: 291 KNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDII 350

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN LI+G C  G + EA KLL  M   G  PD  ++ T+I G+   +  D A +  K+
Sbjct: 351 TYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE 409



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  +V  YSSL+N LC   R  EA ++FD M
Sbjct: 246 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 305

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  ++ TY  L+  +  K+GR   +  L   + R   + +I  Y+ +IDG C  G+
Sbjct: 306 TKRGLEPDIATYRTLLQGHC-KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 364

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA K L  +   G+ P +VTY  LING C+   + +A  L  +M   G  P+  ++N 
Sbjct: 365 MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 424

Query: 186 VIQGFLVKNETDRA 199
           ++QG      T  A
Sbjct: 425 ILQGLFHTRRTAAA 438



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 54/231 (23%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCT------------- 52
           H Y I I   C+   +D       + +KKG  +D   ++ L+ GLC              
Sbjct: 93  HTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLR 152

Query: 53  -----------------------FNRLKEAVELFDKMV---AQGITAELVTYNPL----- 81
                                   NR +EA+EL   M      G   ++V+YN +     
Sbjct: 153 RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 82  ---IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
              I      Q    AM +L T+ ++    +   Y+ ++ G C  G+ +EA   L ++  
Sbjct: 213 KEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 272

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            G+ P VVTY+ L+N LCK G   EA K+   M ++G  PD  ++ T++QG
Sbjct: 273 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 323



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  + +   Y   + G CK   +       D  ++ G+  D+  Y++LI+G C 
Sbjct: 302 FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 361

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++ EA +L   MV+ G+  ++VTY  LI+          A+AL + +       NI  
Sbjct: 362 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 421

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++ GL    R   A++    +++ G    + TYNI+++GLCK  +  EA    ++M 
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEA----LRMF 477

Query: 173 EKGCFPD----STSFNTVIQGFLVKNETDRA 199
           +  C  D    + +FN +I   L     D A
Sbjct: 478 QNLCLTDLQLETRTFNIMIGALLKCGRMDEA 508



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVY 113
           ++A  +FD+++ +G  A +   N  + D   +    +A++    + R    K    +  Y
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTY 95

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
           +++I   CR GR +     L  + +KG     +T+  L+ GLC      +A D +L +M 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E GC PD  S+N +++G   +N +  A   L
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELL 186


>gi|414878623|tpg|DAA55754.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 891

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 24/196 (12%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+ R++ +A       +++G+  DV VY+ L+NG C   RL+EA ELF +M+
Sbjct: 527 YSKLISAYCQTRDMHNARLWFHDMVERGLS-DVIVYTVLMNGYCKVGRLQEACELFVQMI 585

Query: 68  AQGITAELVTYNPLIHDNWE---KQG-------------RFSAMALLQTLERDKYELNIE 111
             GI  ++V Y  L+  + +   +QG             R     LL +++  + E ++ 
Sbjct: 586 NLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVT 645

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+    EEAR   D++  KGL+P V TY  LING C +G I +A+ L  +M
Sbjct: 646 CYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEM 705

Query: 172 KEKGCFPDSTSFNTVI 187
             KG  PD  S   VI
Sbjct: 706 IAKGMKPDIWSMMRVI 721



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------------KKGICLDVFVYSSLING 49
           + E   K + H +   I G+C   + D A              ++ + ++   Y+ +I+G
Sbjct: 159 MIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDG 218

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC   +LKEA ++ +     G   +L +Y+ LIH + +      A   ++ +     E+N
Sbjct: 219 LCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEIN 278

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             + + ++  L ++G   E      +  + G+    V YNI ++  CK G + EA KLL 
Sbjct: 279 CYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLN 338

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +M      PD   +  +I G+ +K ET+ A
Sbjct: 339 EMMAGSLVPDKIHYTCLINGYCLKGETENA 368



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 84/165 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD  +Y+  ++  C    + EAV+L ++M+A  +  + + Y  LI+    K    +A
Sbjct: 309 GVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENA 368

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + + +   + ++  Y+++  G  R G   +    L+ + ++GL P  +TY I I G
Sbjct: 369 WQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAG 428

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            C+ G + EA+ L   ++E+G    +  + +++ G+L    TD A
Sbjct: 429 FCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHA 473



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK+  ++ A+K         +  D   Y+ LING C     + A ++F++M
Sbjct: 316 LYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEM 375

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +   I  ++VTYN ++   + + G       +L+ +     E N   Y + I G CR G 
Sbjct: 376 LKANIKPDVVTYN-ILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGN 434

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA    + + E+G+    V Y  ++ G    G    A  L +++ ++G   D  S + 
Sbjct: 435 LSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSK 494

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G     +   AS+  K
Sbjct: 495 LINGLCRDEKVGEASTVCK 513



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 12/202 (5%)

Query: 1   FDLTE----QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           FD+ E    Q  + N   YGI I G C+   +  A        ++GI     +Y S++ G
Sbjct: 404 FDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCG 463

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
                    A  LF ++  QG   + ++ + LI+     +    A  + + +       +
Sbjct: 464 YLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPD 523

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  YS +I   C+      AR     + E+GL   V+ Y +L+NG CK G + EA +L V
Sbjct: 524 VISYSKLISAYCQTRDMHNARLWFHDMVERGL-SDVIVYTVLMNGYCKVGRLQEACELFV 582

Query: 170 QMKEKGCFPDSTSFNTVIQGFL 191
           QM   G  PD  ++  ++ G L
Sbjct: 583 QMINLGIKPDVVAYTVLLDGHL 604


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 15/207 (7%)

Query: 8   FKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
           F  N  +  I + G+C+          IRE+    +K +  D+  Y++LINGLC   +LK
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMG---RKSVSPDIVSYNTLINGLCKAKKLK 196

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
           EAV L  +M A G     VT   L+ D   K GR   AM LL+ +++  ++ ++ +Y  +
Sbjct: 197 EAVGLLLEMEAAGCFPNSVTCTTLM-DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTL 255

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I G C  G  +  ++  D++  KG+   VVTY+ L++GLC+ G   EA+ +L  M E G 
Sbjct: 256 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 315

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  ++  +I G         A   L
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLL 342



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 11/213 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++ F  +  +YG  I+G C    +D         + KGI  +V  YS L++GLC   +
Sbjct: 240 MKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQ 299

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            KEA  + + M   GI  ++VTY  LI D   K GR + AM LL  +     E +   Y+
Sbjct: 300 WKEANTVLNAMAEHGIHPDVVTYTGLI-DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 358

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KE 173
           +++ GLC+ G   +A K L  + EKG    VVTYN L+ GLC KG + EA KL   M   
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418

Query: 174 KGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + C  P+  +FN +I G   +    +A    +K
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 451



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 44/247 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLD--VFVYSSLINGLCTF 53
           + E+  K +   Y   + G+C   ++D A+K          CL+  VF ++ LI GLC  
Sbjct: 380 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 439

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL +AV++  KMV +G    LVTYN L+    +      AM L + +    +  N   Y
Sbjct: 440 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 499

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL----- 168
           S++IDG C++     A+    ++   GL P +  YN L+  LCK+G + +A  L      
Sbjct: 500 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559

Query: 169 ----------------------------VQMK--EKGCFPDSTSFNTVIQGFLVKNETDR 198
                                       +QMK  E G  PD+ +F+T+I       E D 
Sbjct: 560 ANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDE 619

Query: 199 ASSFLKK 205
           A S L++
Sbjct: 620 AKSALER 626



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G+CK        + +   I+KG   DV  Y++L+ GLC   ++ EA++LF+ M
Sbjct: 356 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 415

Query: 67  V--AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
                 +   + T+N LI     K+GR + A+ + + + +     N+  Y++++ G  + 
Sbjct: 416 FDNENCLEPNVFTFNMLI-GGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 474

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ +EA +   Q+ + G VP   TY+ILI+G CK  M+  A  L  +M+  G  P    +
Sbjct: 475 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDY 534

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT++     +   ++A S  ++
Sbjct: 535 NTLMASLCKEGSLEQAKSLFQE 556



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 44/225 (19%)

Query: 10  GNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ++G+C++ +       +++  + GI  DV  Y+ LI+GLC   R   A++L
Sbjct: 282 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDL 341

Query: 63  FDKMVAQG-----IT------------------------------AELVTYNPLIHDNWE 87
            + MV +G     +T                              A++VTYN L+    +
Sbjct: 342 LNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCD 401

Query: 88  KQGRFSAMALLQTL--ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           K     A+ L  ++    +  E N+  ++++I GLC+ GR  +A K   ++ +KG    +
Sbjct: 402 KGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNL 461

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           VTYN+L+ G  K G I EA +L  Q+ + G  P+S +++ +I GF
Sbjct: 462 VTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGF 506



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVEL 62
           GN   Y + + G  K  +I  A++        G   + F YS LI+G C    L  A  L
Sbjct: 459 GNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGL 518

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +M   G+   L  YN L+    ++     A +L Q +     E +I  ++ +IDG  +
Sbjct: 519 FCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLK 578

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G ++  ++   ++ E GL P  +T++ LIN L K G + EA   L +M   G  PD+  
Sbjct: 579 AGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALV 638

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++++++G   K +T    + L +
Sbjct: 639 YDSLLKGLSSKGDTTEIINLLHQ 661



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 91/172 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G  ++VF+ + ++ GLC    + EA+ L  +M  + ++ ++V+YN LI+   + +  
Sbjct: 136 LKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKL 195

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +E      N    + ++DGLC+ GR +EA + L+ + +KG    VV Y  L
Sbjct: 196 KEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTL 255

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+G C  G +    +L  +M  KG   +  +++ ++ G     +   A++ L
Sbjct: 256 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLE 102
           L++ L        A  ++ +M    +     + + LI    D  + Q  F  + L+  L+
Sbjct: 80  LVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLV--LK 137

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R  + +N+ + ++V+ GLCR G   EA   + ++  K + P +V+YN LINGLCK   + 
Sbjct: 138 RG-FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLK 196

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           EA  LL++M+  GCFP+S +  T++ G       D A   L+
Sbjct: 197 EAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLE 238



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y I I+G CK+R ++ A          G+   +F Y++L+  LC    L++A 
Sbjct: 492 FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 551

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE----VYSLV 116
            LF +M       +++++N +I D   K G F     ++ L+    E+ +      +S +
Sbjct: 552 SLFQEMGNANCEPDIISFNTMI-DGTLKAGDFQ---FVKELQMKMVEMGLRPDALTFSTL 607

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I+ L ++G  +EA+  L+++   G  P  + Y+ L+ GL  KG   E   LL QM  KG 
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 177 FPDSTSFNTVI 187
             D    +T++
Sbjct: 668 VLDRKIVSTIL 678



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDK-------------MVAQGITAELVTYNPL 81
           G+   V+   + ++ L +F  L   +E F               ++ +G T  +   N +
Sbjct: 91  GLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIV 150

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           +       G F AM L++ + R     +I  Y+ +I+GLC+  + +EA   L ++   G 
Sbjct: 151 LKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGC 210

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            P  VT   L++GLCK G + EA +LL  MK+KG   D   + T+I GF      DR 
Sbjct: 211 FPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 268



 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  D   +S+LIN L     L EA    ++MVA G T + + Y+ L+     K   
Sbjct: 593 VEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDT 652

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
              + LL  +      L+ ++ S ++  LC 
Sbjct: 653 TEIINLLHQMAAKGTVLDRKIVSTILTCLCH 683


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  + + Y   I+G+CK+ E+D A+K       +    +   Y+++I+ LC  N+++EA 
Sbjct: 332 FDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEAT 391

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L   +  +GI  ++ TYN LI      +    AM L + ++      +   Y+++ID L
Sbjct: 392 KLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSL 451

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G+ +EA   L ++   G    V+TYN LI+G CK   I EA+++  QM+ +G   +S
Sbjct: 452 CFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNS 511

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++NT+I G       + AS  + +
Sbjct: 512 VTYNTLIDGLCKSERVEEASQLMDQ 536



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+C  R    A++       KG   D F Y+ LI+ LC   +L+EA+ L  +M
Sbjct: 408 TYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM 467

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G    ++TYN LI D + K  R + A  +   +E      N   Y+ +IDGLC+  R
Sbjct: 468 EVSGCARNVITYNTLI-DGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSER 526

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA + +DQ+  +GL P   TYN L+   CK G I +A  ++  M   GC PD  ++ T
Sbjct: 527 VEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGT 586

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I G       + A+  L+
Sbjct: 587 LIAGLCKAGRVEAATKLLR 605



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK + I  A +       +G+  +   Y++LI+GLC   R++EA +L 
Sbjct: 475 NVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM 534

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +G+  +  TYN L+    +      A  ++QT+  D  E +I  Y  +I GLC+ 
Sbjct: 535 DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR E A K L  +  KG+      YN +I  L ++    EA +L  +M EK   PD+ ++
Sbjct: 595 GRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654

Query: 184 NTVIQGF 190
             V +G 
Sbjct: 655 KIVFRGL 661



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 21  GMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           G CK   I+ A++        +G   D + ++ L+NGL     +K A+E+ D M+ +G  
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD 333

Query: 73  AELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
            ++ TYN LI     K G    +   L Q +ERD    N   Y+ +I  LC+  + EEA 
Sbjct: 334 PDIYTYNSLI-SGLCKLGEVDEAVKVLNQMIERD-CSPNTVTYNTIISTLCKENQVEEAT 391

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K    L+ KG++P V TYN LI GLC       A +L  +MK KGC PD  ++N +I   
Sbjct: 392 KLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSL 451

Query: 191 LVKNETDRASSFLKK 205
             + +   A + LK+
Sbjct: 452 CFRGKLQEALNLLKE 466



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 17/204 (8%)

Query: 14  VYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +C   K++E  + +K+    G   +V  Y++LI+G C   R+ EA E+FD+M
Sbjct: 443 TYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQM 502

Query: 67  VAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             QG++   VTYN LI      +  E+  +     +++ L  DK+      Y+ ++   C
Sbjct: 503 ELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKF-----TYNSLLTYFC 557

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A   +  ++  G  P +VTY  LI GLCK G +  A KLL  ++ KG      
Sbjct: 558 KAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH 617

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++N VIQ    +  +  A    ++
Sbjct: 618 AYNPVIQALFRRKRSKEAVRLFRE 641



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 53/239 (22%)

Query: 10  GNFHVYGIRINGMC-----KIREIDSA--IKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N H Y   +N +      K+ EI  +  + +GI  DV  ++ LI  LC  ++++ A+ L
Sbjct: 158 ANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILL 217

Query: 63  FDKMVAQGITAELVTYNPLIHDNWE----------------------------------K 88
            ++M   G+  +  T+  ++    E                                  K
Sbjct: 218 MEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCK 277

Query: 89  QGRFSA-------MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           +GR          M+L +    DKY  N     ++++GL + G  + A + +D +  +G 
Sbjct: 278 EGRIEEALRFIEEMSLREGFFPDKYTFN-----MLVNGLSKTGHVKHALEVMDMMLREGF 332

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            P + TYN LI+GLCK G + EA K+L QM E+ C P++ ++NT+I     +N+ + A+
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEAT 391



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  Y +LI GLC   R++ A +L   +  +GI      YNP+I   + ++    A+ L 
Sbjct: 580 DIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLF 639

Query: 99  QTLERDKYELNIEVYSLVIDGLCR-VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + +       +   Y +V  GLC+  G   EA   + ++ E+G VP   ++ +L  GL  
Sbjct: 640 REMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFS 699

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             M+    KL+  + EK  F D+    T+I+GFL
Sbjct: 700 LAMVGTLIKLIDMVMEKAKFSDNEV--TMIRGFL 731



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 36/210 (17%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  +   Y+ L+N L   N+LK        MV++GI  ++ T+N LI         
Sbjct: 152 VEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQI 211

Query: 92  FSAMALLQTLERDKYELNIEVYSLVID--------------------------------- 118
             A+ L++ +E      + + ++ ++                                  
Sbjct: 212 RPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVL 271

Query: 119 --GLCRVGRWEEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             G C+ GR EEA + ++++S  +G  P   T+N+L+NGL K G +  A +++  M  +G
Sbjct: 272 VNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREG 331

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N++I G     E D A   L +
Sbjct: 332 FDPDIYTYNSLISGLCKLGEVDEAVKVLNQ 361


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 19  INGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           I G   +R I  A++    L      DVF Y++LING C  NR+ +A  + D+M ++  +
Sbjct: 131 IKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
            + VTYN +I     +     A+ +L  L  D  +  +  Y+++I+     G  +EA K 
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           +D++  +GL P + TYN +I G+CK+GM+  A +++  ++ KGC PD  S+N +++  L 
Sbjct: 251 MDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLN 310

Query: 193 KNETDRASSFLKK 205
           + + +     + K
Sbjct: 311 QGKWEEGEKLMTK 323



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   ING CK+  ID A +       K    D   Y+ +I  LC+  
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 55  RLK-----------------------------------EAVELFDKMVAQGITAELVTYN 79
           +L                                    EA++L D+M+++G+  ++ TYN
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I    ++     A  +++ LE    E ++  Y++++  L   G+WEE  K + ++  +
Sbjct: 268 TIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P VVTY+ILI  LC+ G I EA  LL  MKEKG  PD+ S++ +I  F  +   D A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 200 SSFLK 204
             FL+
Sbjct: 388 IEFLE 392



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 10/180 (5%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-- 82
           ++ +D  + +G+  D+F Y+++I G+C    +  A E+   +  +G   ++++YN L+  
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307

Query: 83  ---HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                 WE+  +     L+  +  +K + N+  YS++I  LCR G+ EEA   L  + EK
Sbjct: 308 LLNQGKWEEGEK-----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P   +Y+ LI   C++G +  A + L  M   GC PD  ++NTV+       + D+A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +  K +   Y   I GMCK   +D A +       KG   DV  Y+ L+  L    
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + +E  +L  KM ++     +VTY+ LI           AM LL+ ++      +   Y 
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 372

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   CR GR + A + L+ +   G +P +V YN ++  LCK G   +A ++  ++ E 
Sbjct: 373 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 432

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+S+S+NT+        +  RA
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRA 457



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I  +C+  +I+ A+       +KG+  D + Y  LI   C   RL  A+E  
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M++ G   ++V YN ++    +      A+ +   L       N   Y+ +   L   
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   + ++   G+ P  +TYN +I+ LC++GM+ EA +LLV M+     P   ++
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF   +  + A + L+ 
Sbjct: 512 NIVLLGFCKAHRIEDAINVLES 533



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I   C+   +D AI+        G   D+  Y++++  LC   +
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+E+F K+   G +    +YN +    W    +  A+ ++  +  +  + +   Y+ 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  +EA + L  +      P VVTYNI++ G CK   I +A  +L  M   G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538

Query: 176 CFPDSTSFNTVIQG 189
           C P+ T++  +I+G
Sbjct: 539 CRPNETTYTVLIEG 552



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +  +CK  + D A++        G   +   Y+++ + L +      A+ +  +M+
Sbjct: 406 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMM 465

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + GI  + +TYN +I     +     A  LL  +   ++  ++  Y++V+ G C+  R E
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 525

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           +A   L+ +   G  P   TY +LI G+   G   EA +L
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVV---------------------------------- 146
           CR G + E+   L+ +  KG  P V+                                  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            YN LING CK   I +A ++L +M+ K   PD+ ++N +I     + + D A   L +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 13/211 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFN 54
           D+    F      Y + +   C     D  IK  + L       DV  Y+++I+GLC   
Sbjct: 153 DMRAAGFAPTAATYNVLLKAQCSDAAAD--IKDALRLFRNIPKPDVCSYNTIIDGLCRRG 210

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEV 112
           RL  A+E+F +MV + I   +VTY  LIH  W  ++G F  A+ +   + R     N+  
Sbjct: 211 RLAAALEMFSEMVGKCIAPTVVTYTTLIH--WLAREGCFDDALKIFDEMGRRGVSPNLVT 268

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +IDGLC+ GR   A + +D++ ++  +P  +TY+ +I+GLCK+ M+ EA ++L +M+
Sbjct: 269 YSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMR 328

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +G  PD+  F  +I G         A+++L
Sbjct: 329 LQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 359



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   + +A++       K I   V  Y++LI+ L       +A+++FD+M 
Sbjct: 199 YNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMG 258

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G++  LVTY+ LI D   K GR  SA+ L+  + ++K   N   YS VIDGLC+    
Sbjct: 259 RRGVSPNLVTYSSLI-DGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHML 317

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            EA + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 318 SEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLH 377

Query: 184 ----NTVIQGFLVKNETDRA 199
               NTV+     K E  RA
Sbjct: 378 TRINNTVLTALCAKGELGRA 397



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 7/175 (4%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+  ++  YSSLI+GLC   R   A+EL D+M+ +      +TY+ +I    ++    
Sbjct: 259 RRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLS 318

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY---- 148
            AM +L  +     + +  ++  +I GLC  GR  EA   LD++   G+ P  VT+    
Sbjct: 319 EAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHT 378

Query: 149 ---NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
              N ++  LC KG +  A ++    + +    D T+F+ +++ F  K   ++A+
Sbjct: 379 RINNTVLTALCAKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFSKKKNMEKAA 433


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 118/213 (55%), Gaps = 8/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++ F+ +   Y   I+G CK+ E+  A       ++ G+  +V  Y++L +GLC   
Sbjct: 275 EMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSG 334

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A EL  +M  +G+   + TYN +++   +      A+ L++ ++      +   Y+
Sbjct: 335 ELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYT 394

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++D   + G   +AR+ L ++ ++GL P VVT+N+L+NGLC  G + + ++LL  M EK
Sbjct: 395 TLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEK 454

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  P++ ++N++++ + ++N   R S+ + + M
Sbjct: 455 GIMPNAATYNSIMKQYCIRNNM-RISTEIYRGM 486



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 107/204 (52%), Gaps = 8/204 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y    +G+CK  E+D+A        +KG+ L++  Y++++NGLC    + +AV+L 
Sbjct: 319 NVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLM 378

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M   G+  + +TY  L+   ++      A  LL+ +     +  +  ++++++GLC  
Sbjct: 379 EEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMS 438

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+  + L  + EKG++P   TYN ++   C +  +  + ++   M  +G  PDS ++
Sbjct: 439 GKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTY 498

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           N +I+G   K    + + FL K M
Sbjct: 499 NILIKGH-CKARNMKEAWFLHKEM 521



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 13/193 (6%)

Query: 8   FKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLK 57
            K N + Y   I  +CK          +RE+   +K+G+  D  +Y++LI+G C     +
Sbjct: 176 LKPNLYTYSSIILLLCKSGKVVEGEKVLREM---MKRGVFPDHVIYTTLIDGFCKLGNTQ 232

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A +LF +M A+ I  + + ++ LI           A  L   + +  +E +   Y+ +I
Sbjct: 233 AAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALI 292

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C++G  ++A    +Q+ + GL P VVTY  L +GLCK G +  A++LL +M  KG  
Sbjct: 293 DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQ 352

Query: 178 PDSTSFNTVIQGF 190
            + +++NT++ G 
Sbjct: 353 LNISTYNTIVNGL 365



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+C +   Y+ L+N L    +++EA  L  +M  +G   ++V+Y  +I D +   G    
Sbjct: 105 GVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTII-DGYCHVGELQK 163

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            + L++ ++    + N+  YS +I  LC+ G+  E  K L ++ ++G+ P  V Y  LI+
Sbjct: 164 VVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLID 223

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G CK G    A KL  +M+ +   PDS +F+ +I G 
Sbjct: 224 GFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGL 260



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L    FKG   +   Y   I+G C + E+   ++       KG+  +++ YSS+I  LC 
Sbjct: 133 LMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCK 192

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             ++ E  ++  +M+ +G+  + V Y  LI D + K G   +A  L   +E  +   +  
Sbjct: 193 SGKVVEGEKVLREMMKRGVFPDHVIYTTLI-DGFCKLGNTQAAYKLFSEMEAREIVPDSI 251

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            +S +I GL   G+  EA K  +++ +KG  P  VTY  LI+G CK G + +A  L  QM
Sbjct: 252 AFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQM 311

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + G  P+  ++  +  G     E D A+  L +
Sbjct: 312 VQIGLTPNVVTYTALADGLCKSGELDTANELLHE 345



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +NG+C   +++         ++KGI  +   Y+S++   C  N ++ + E++  M
Sbjct: 427 TFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGM 486

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            AQG+  +  TYN LI  + + +    A  L + +   ++ L    Y+ +I G  +  + 
Sbjct: 487 CAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKL 546

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILIN 153
            EAR+  +++  +GLV     YN+ ++
Sbjct: 547 LEARQLFEEMRREGLVASAEIYNLFVD 573



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 22  MCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           M K RE+    + +G+   V  ++ L+NGLC   +L++   L   M+ +GI     TYN 
Sbjct: 406 MVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNS 465

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           ++     +     +  + + +       +   Y+++I G C+    +EA     ++ EK 
Sbjct: 466 IMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKR 525

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
                 +YN LI G  K+  ++EA +L  +M+ +G    +  +N  +
Sbjct: 526 FNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K   +  + G+     +YNIL+N L + G I EA  LL++M+ KGC PD  S+ T+I G+
Sbjct: 96  KVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGY 155

Query: 191 LVKNETDRASSFLKK 205
               E  +    +K+
Sbjct: 156 CHVGELQKVVQLVKE 170



 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 28  IDSAIKKGICL-----DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           I + I +G+C      D   Y+ LI G C    +KEA  L  +MV +       +YN LI
Sbjct: 478 ISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALI 537

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
              ++++    A  L + + R+    + E+Y+L +D     G  E   +  D+  EK L+
Sbjct: 538 KGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCLL 597


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 42/211 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y I ING+CK+  I       + AI KG   DVF +++LI+G C   
Sbjct: 388 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 447

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A++L ++M   GI  + +TYN                                   
Sbjct: 448 KLDSALQLVERMWEYGIAPDTITYNS---------------------------------- 473

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            V++GLC+ G+  E  +   ++  KG  P  +TYNILI   C+   + EA K++V+M ++
Sbjct: 474 -VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 532

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+ SFNT+I GF    + + A    +K
Sbjct: 533 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 563



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLD---VFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + H + IR+   C       A++    L       Y +++ GL       +A +LFD+M+
Sbjct: 122 DLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML 181

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +   L  +N ++H   ++     A  LL  + +    +N+  Y++ I GLC  GR  
Sbjct: 182 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 241

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +D +     VP VVTYN LI GLCKK M  EA   L +M  +GC PD  ++NT+I
Sbjct: 242 EAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 300

Query: 188 QGFLVKNETDRASSFLK 204
            G+   +    A+  LK
Sbjct: 301 DGYCKISMVQEATELLK 317



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G+CK       +  +   + +G   D F Y+++I+G C  + ++EA EL    V
Sbjct: 261 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 320

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   + VTY  LI+    +     A+ L    +    + +I VY+ ++ GLC  G   
Sbjct: 321 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLIL 380

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + +++++E+G  P + TYNI+INGLCK G I +A  ++     KG  PD  +FNT+I
Sbjct: 381 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 440

Query: 188 QGFLVKNETDRASSFLKK 205
            G+  + + D A   +++
Sbjct: 441 DGYCKRLKLDSALQLVER 458



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 42/179 (23%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++DSA++        GI  D   Y+S++NGLC   ++ E  E F +M+ +G 
Sbjct: 440 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TYN                                   ++I+  CR  + EEA K
Sbjct: 500 HPNPITYN-----------------------------------ILIENFCRSNKMEEASK 524

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            + ++S++GL P  V++N LI G C+ G +  A  L  +++EKG    + +FNT+I  F
Sbjct: 525 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 43/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   ++ +CK  ++  A       I++G+ +++F Y+  I GLC   RL EAV L 
Sbjct: 188 NLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLV 247

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M A  +  ++VTYN LI                                    GLC+ 
Sbjct: 248 DGMRAYAV-PDVVTYNTLIR-----------------------------------GLCKK 271

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              +EA   L ++  +G +P   TYN +I+G CK  M+ EA +LL     KG  PD  ++
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 331

Query: 184 NTVIQGFLVKNETDRA 199
            ++I G   + + +RA
Sbjct: 332 CSLINGLCAEGDVERA 347



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+CK  +++         I KG   +   Y+ LI   C  N+++EA ++  KM 
Sbjct: 471 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 530

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  + V++N LI+          A  L Q LE   Y    + ++ +I          
Sbjct: 531 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 590

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K  D++  KG      TY +LI+G CK   +  A   LV+M +KG  P  ++F  VI
Sbjct: 591 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 650

Query: 188 QGFLVKNETDRA 199
               V +   +A
Sbjct: 651 NSLTVNHRVFQA 662



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I   C+  +++ A K       +G+  D   +++LI G C    L+ A  LF K+ 
Sbjct: 506 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 565

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G +A   T+N LI     K     A  +   +    +  +   Y ++IDG C+    +
Sbjct: 566 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 625

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            A   L ++ +KG +P + T+  +IN L     + +A  ++  M + G  P+
Sbjct: 626 RAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 677



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y + I       RL++AV+ F++M           YN ++    +      A  +   +
Sbjct: 55  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 114

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  ++  +++ +   C   R   A + L  L  +G     V Y  ++ GL   G  
Sbjct: 115 LAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHT 170

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A +L  QM     FP+  +FN V+     + +   A   L K
Sbjct: 171 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGK 214


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E +  G F     + + ING+CK  ++  A K       KG   +   Y++LI+GLC 
Sbjct: 257 LDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCL 316

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L++A+ L D+MV+      +VTY  +I +   KQGR      +L  +E   Y +N  
Sbjct: 317 KGKLEKAISLLDRMVSSKCVPNVVTYGTII-NGLVKQGRALDGACVLALMEERGYCVNEY 375

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VYS +I GL + G+ +EA     +++ KG     + Y+ +I+GLC+ G   +A ++L +M
Sbjct: 376 VYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEM 435

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             KGC P++ + +++++GF     + RA
Sbjct: 436 TNKGCTPNAYTCSSLMKGFFEAGNSHRA 463



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-AQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           ++S++N +        A+E ++ ++ A+G  I+  ++T+N +I    +      A+ + +
Sbjct: 164 FNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFR 223

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +   K E ++  Y  ++DGLC+  R +EA   LD++   G  P  VT+N+LINGLCKKG
Sbjct: 224 DMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKG 283

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +  A KL+  M  KGC P+  ++NT+I G  +K + ++A S L +
Sbjct: 284 DLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDR 329



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 42/188 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I  MCK+  +D AI+       +    DV+ Y +L++GLC  +R+ EAV L 
Sbjct: 198 NVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLL 257

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G     VT+N                                   ++I+GLC+ 
Sbjct: 258 DEMQIDGCFPSPVTFN-----------------------------------VLINGLCKK 282

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A K +D +  KG +P  VTYN LI+GLC KG + +A  LL +M    C P+  ++
Sbjct: 283 GDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTY 342

Query: 184 NTVIQGFL 191
            T+I G +
Sbjct: 343 GTIINGLV 350



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ +  N +VY   I+G+ K  +   A+        KG  L+  VYS++I+GLC   +
Sbjct: 365 MEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGK 424

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +AVE+  +M  +G T    T + L+   +E      A+ + + + +  +  N   YS+
Sbjct: 425 PDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSV 484

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ G+ +EA     Q+  KG  P VV Y+ +INGL   G++ +A +L  +M  +G
Sbjct: 485 LIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQG 544

Query: 176 --CFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N ++     ++   RA   L
Sbjct: 545 PDSQPDVVTYNILLNTLCKQSSISRAIDLL 574


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+    F  +     I I+ +CK   +  A++       KG   DV  Y++++  LC   
Sbjct: 250 DMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNK 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  EAV L+++MV  G+  ++V    LI    +      A  L   +     EL++ +Y+
Sbjct: 310 RFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYN 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  R G  ++A   +  +   G  PGVVTYNIL+N  C  GM+ +A+ L+ +M+  
Sbjct: 370 ALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETS 429

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  PD  S+N +++G    ++ D+A +F+  +M
Sbjct: 430 GVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHM 462



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 9/187 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y   + G+CK  ++D A           G C D+   + LI+  C   ++K A+ELF 
Sbjct: 436 YSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFC-DIVSCNILIDAFCKVKKVKSALELFK 494

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  +G+ A+ VTY  LI+  +       A  L + + + + + N+ +Y++++  LC+VG
Sbjct: 495 EMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVG 554

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             + A+K    + +K ++P +VTYN LI  L K    MEA  L   M+ KG  PDS +F 
Sbjct: 555 DLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFK 614

Query: 185 TVIQGFL 191
            +I G L
Sbjct: 615 YLINGLL 621



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G+  DV    +LI GLC  ++++EA EL  +M++  I   +  YN LI   W     
Sbjct: 322 VKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSI 381

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  ++  +  +  E  +  Y+++++  C +G  E+A   + ++   G+ P   +YN L
Sbjct: 382 DKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQL 441

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + GLCK   + +A   +    E G F D  S N +I  F
Sbjct: 442 LKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAF 480



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G  +   ID A          G    V  Y+ L+N  CT   +++A  L  KM
Sbjct: 367 IYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKM 426

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G+  +  +YN L+    +      A A +          +I   +++ID  C+V + 
Sbjct: 427 ETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKV 486

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A +   ++  KG+    VTY  LINGL   G    A++L  QM +    P+   +N +
Sbjct: 487 KSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIM 546

Query: 187 IQGFLVKNETDRA 199
           +       +  RA
Sbjct: 547 LHHLCKVGDLKRA 559



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWE 87
            +G+ L   +Y  L++G     +    +  FD+MV  G     + YN  I     +  ++
Sbjct: 148 SQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVLIKNCCFD 207

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              ++  MAL + L    +      YS  I  LC+  R E   + L  +   G  P +  
Sbjct: 208 LVEKYYGMALSKGLCLTPF-----TYSRWISALCQSNRIELVEELLADMDRFGFSPDIWA 262

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
            NI I+ LCK+  + +A +++ +M+ KG  PD  ++ TV+ G L  N+
Sbjct: 263 CNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVV-GCLCNNK 309



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+  +   + A       +K  I  +V +Y+ +++ LC    LK A ++F  M+
Sbjct: 508 YGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMI 567

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + I  ++VTYN LI+   +      A+ L + +     E +   +  +I+GL   GR  
Sbjct: 568 QKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRST 627

Query: 128 EARKKLDQLSEKGLV 142
            A +  + + E G++
Sbjct: 628 LAYEVWEYMMENGII 642



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 2   DLTEQRFKG----NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGL 50
           +L EQ  K     N ++Y I ++ +CK+ ++  A       I+K I  D+  Y++LI  L
Sbjct: 526 ELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWL 585

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
              +R  EA++LF  M  +G+  + +T+  LI+
Sbjct: 586 GKNSRAMEALDLFKDMRTKGVEPDSLTFKYLIN 618


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 111/198 (56%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+CK+ +  +A++       K +  +V +Y+++I+ +C    + EA +L+ +MV
Sbjct: 146 YGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 205

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++GI+ ++VTY+ LI   +       A+ L   +  +  + ++  +++++DG C+ G+ +
Sbjct: 206 SEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMK 265

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           E +     + ++G+ P VVTY  L++G C    + +A+ +   M + G  PD+ S+N +I
Sbjct: 266 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMI 325

Query: 188 QGFLVKNETDRASSFLKK 205
            GF    + D A +  KK
Sbjct: 326 NGFCKIKKVDEAMNLFKK 343



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 17/219 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  K N   Y   ++G C +++++ A        + G+  D   Y+ +ING C   +
Sbjct: 274 MMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKK 333

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA+ LF KM  + I   +VTY  LI D   K G+ S A+ L+  +       +I  YS
Sbjct: 334 VDEAMNLFKKMHCKNIIPNVVTYTSLI-DGLCKSGKISYALKLVDEMHDRGVPPDIITYS 392

Query: 115 LVIDGLCRVGRWEEARKKL----DQLSEKGLVPG----VVTYNILINGLCKKGMIMEADK 166
            ++D LC+  + ++A   L    DQ+ E   V G    V  Y ++I G C KG+  EA  
Sbjct: 393 SILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALA 452

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL +M++ G  PD+ ++  +I     K+E D A   L++
Sbjct: 453 LLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLRE 491



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 112/215 (52%), Gaps = 15/215 (6%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +  K + + + I ++G CK  ++          +K+GI  +V  Y SL++G C   ++ +
Sbjct: 242 ENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNK 301

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F+ M   G+  +  +YN +I+   + +    AM L + +       N+  Y+ +ID
Sbjct: 302 ANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLID 361

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE----- 173
           GLC+ G+   A K +D++ ++G+ P ++TY+ +++ LCK   + +A  LL ++K+     
Sbjct: 362 GLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFED 421

Query: 174 ---KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              KG   D  ++  +IQGF VK   + A + L K
Sbjct: 422 LFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSK 456



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 15/176 (8%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING CKI+++D A+        K I  +V  Y+SLI+GLC   ++  A++L D+M 
Sbjct: 321 YNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMH 380

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--------LNIEVYSLVIDG 119
            +G+  +++TY+ ++    +      A+ALL  L+   +E        L++  Y+++I G
Sbjct: 381 DRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQG 440

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            C  G + EA   L ++ + G +P   TY I+I  L KK     A+KLL +M  +G
Sbjct: 441 FCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 496



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +F +  ++  L   N    A+ L  +M  +GI + LVT N LI+   +      + ++  
Sbjct: 60  IFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFA 119

Query: 100 TLERDKYELNIEV-------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            + +  Y+ N+               Y  +I+GLC+VG+   A + L ++  K + P VV
Sbjct: 120 NILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVV 179

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            YN +I+ +CK  ++ EA  L  +M  +G  PD  +++ +I GF +  +   A     K
Sbjct: 180 MYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNK 238



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG   +V   ++LI GLC    LK                  V+Y  LI+   +    
Sbjct: 122 LKKGYDPNVITLTTLIKGLC----LK------------------VSYGTLINGLCKVGQA 159

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ LL+ ++    + N+ +Y+ +ID +C+V    EA     ++  +G+ P VVTY+ L
Sbjct: 160 RAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSAL 219

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+G    G + +A  L  +M  +   PD  +FN ++ GF
Sbjct: 220 ISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGF 258


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 13/212 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICL-DVFVYSSLINGLCTFNRL 56
           +   K N  ++ I I   CK  +++SA        K  I   ++  YS+L++GLC   RL
Sbjct: 183 DHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRL 242

Query: 57  KEAVELFDKMVAQG-ITAELVTYNPLIH--DNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           KEA+ELF++MV++  I  + +TYN LI+    W K  R  A  +++ ++ +    N+  Y
Sbjct: 243 KEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDR--AKKIMEFMKSNGCSPNVFNY 300

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S ++ G C+ GR EEA    +++   GL    V Y ILIN  C+ G I EA  LL +MKE
Sbjct: 301 SALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKE 360

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C  D  + N +++GF  +  T+ A   L +
Sbjct: 361 TKCKADIVTVNVLLRGFCGEGRTEEALGMLNR 392



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ING     ++D A K        G   +VF YS+L++G C   RL+EA++ F++M
Sbjct: 264 TYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEM 323

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G+  + V Y  LI + + + GR   AMALL+ ++  K + +I   ++++ G C  GR
Sbjct: 324 KIFGLKQDTVGYTILI-NYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGR 382

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA   L++LS +G+     +Y I++N LC+KG + +A +LL     +G  P   + N 
Sbjct: 383 TEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNE 442

Query: 186 VIQGFLVKNETDRA 199
           ++ G       D A
Sbjct: 443 LLVGLCKAGMADDA 456



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G CK   ++ A+         G+  D   Y+ LIN  C F R+ EA+ L 
Sbjct: 296 NVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALL 355

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M      A++VT N L+   +  +GR   A+ +L  L  +   LN   Y +V++ LC+
Sbjct: 356 EEMKETKCKADIVTVNVLLR-GFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQ 414

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A + L     +G VP   T N L+ GLCK GM  +A   L  + E G  P+  S
Sbjct: 415 KGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDS 474

Query: 183 FNTVIQ 188
           +  +++
Sbjct: 475 WALLVE 480



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 15  YGIRINGMCKIREIDSAI------KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I IN  C+   ID A+      K+  C  D+   + L+ G C   R +EA+ + +++ 
Sbjct: 335 YTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLS 394

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-TLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++GI     +Y  +++   +K     A+ LL  TL R     +     L++ GLC+ G  
Sbjct: 395 SEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLV-GLCKAGMA 453

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++A   L  L+E G  P   ++ +L+  +C++  ++ A +LL ++    C
Sbjct: 454 DDAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANEC 503


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 114/212 (53%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F+  ++R K + + +GI I G C+   +D + +        G+  +V +Y++LI+G C  
Sbjct: 151 FNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKN 210

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++ A   FDKM   G+ A   T+  LI+  ++K  +     L + ++ +    N+  Y
Sbjct: 211 GDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTY 270

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +++  C  G+   A    D++ E+G+   VVTYN LI G+C++  + EA+KL+ QMK+
Sbjct: 271 NCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKK 330

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               P+  ++NT+I GF      D+ASS L +
Sbjct: 331 AAVSPNLITYNTLIGGFCDVGNLDKASSLLDQ 362



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + N   Y   I GMC+   +       D   K  +  ++  Y++LI G C   
Sbjct: 292 EMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVG 351

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
            L +A  L D++ + G++  LVTYN LI + + K G +  +A L + +E      +    
Sbjct: 352 NLDKASSLLDQLKSNGLSPSLVTYNILI-EGYSKAGNWKGVADLAREMEGRGISPSKVTC 410

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++ID   R+   E+A +    + + GLVP V  Y +LI+GLC KG + E+ KL   M E
Sbjct: 411 TVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGE 470

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               P    +NT+I G+  ++ + RA   L++
Sbjct: 471 MHVEPSDVIYNTMIHGYCKEDNSYRALRLLRE 502



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L +     N  +Y   I+G CK  +I+ A        + G+  + + ++ LINGL     
Sbjct: 188 LQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGL 247

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            K+  +LF+KM   G+   L TYN L+++   +     A  L   +     E N+  Y+ 
Sbjct: 248 KKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNT 307

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G+CR  R  EA K +DQ+ +  + P ++TYN LI G C  G + +A  LL Q+K  G
Sbjct: 308 LIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNG 367

Query: 176 CFPDSTSFNTVIQGF 190
             P   ++N +I+G+
Sbjct: 368 LSPSLVTYNILIEGY 382



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +++ Y+ L+N  C   ++  A +LFD+M  +G+ A +VTYN LI     ++  + A
Sbjct: 262 GLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEA 321

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+  +++     N+  Y+ +I G C VG  ++A   LDQL   GL P +VTYNILI G
Sbjct: 322 EKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEG 381

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             K G       L  +M+ +G  P   +   +I  ++   E ++A
Sbjct: 382 YSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKA 426



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 17  IRINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +R+  M K  +I S+++K G+  DV+VY  LI+GLC    +KE+ +LF  M    +    
Sbjct: 418 VRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSD 477

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           V YN +IH   ++   + A+ LL+ +E      N+  YS +I  LC+ G+WEEA   LD+
Sbjct: 478 VIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDK 537

Query: 136 LSEKGLVPGVVTYNIL 151
           + E  L P     N++
Sbjct: 538 MIELQLKPSASILNMI 553



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   IN   K + +D A       + KG+     +++SL+  L   N  ++A   F+++
Sbjct: 95  LYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNEL 154

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             + +  ++ ++  +I    E      +  LL  L+      N+ +Y+ +IDG C+ G  
Sbjct: 155 -KERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDI 213

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR   D++ E GLV    T+ +LINGL KKG+  +   L  +MK  G FP+  ++N +
Sbjct: 214 ERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCL 273

Query: 187 IQGFLVKNETDRA 199
           +  +  + +  RA
Sbjct: 274 MNEYCGEGKICRA 286



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 55/232 (23%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           ++I  +  +   +S+I++G        S L+  L   ++L  A  L  ++++  I++   
Sbjct: 14  VKIPPLQALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFF 73

Query: 77  TYNPLIHDNWEKQGRFSAMALL-----------QTLERD--------------------- 104
           T   L+H   + Q      ALL           Q L++                      
Sbjct: 74  TVPSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNS 133

Query: 105 ---------------------KYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGL 141
                                K  +  +VYS  ++I G C  G  +++ + L  L + GL
Sbjct: 134 LLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGL 193

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
            P VV Y  LI+G CK G I  A     +M E G   +  +F  +I G   K
Sbjct: 194 SPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKK 245


>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 225

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y +L+ GL    ++ +A +LF  +   GI+A+   Y   +    +    + AM     L
Sbjct: 18  TYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGCLYEAMEHFNQL 77

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +    +L+IE Y+ +IDGLC+ G+ E A +  ++L ++GL   VVTYNI+I+G CK G +
Sbjct: 78  KSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQV 137

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A+ L  +M+E GC PD  ++NT++ GF   N++D     L K
Sbjct: 138 DKANILFEKMEENGCTPDIITYNTLLCGFCQSNKSDEVVKLLHK 181



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   YG  + G+ +  ++  A K        GI  D  +Y   ++GLC    L EA+E
Sbjct: 13  RPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGCLYEAME 72

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
            F+++ +  I  ++ +YN LI D   K G+  +A  L + L ++  + ++  Y+++I G 
Sbjct: 73  HFNQLKSYNIKLDIESYNCLI-DGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGF 131

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG+ ++A    +++ E G  P ++TYN L+ G C+     E  KLL +M ++   PD+
Sbjct: 132 CKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNKSDEVVKLLHKMIQRDMSPDA 191

Query: 181 TSFNTVI 187
            S N VI
Sbjct: 192 ISCNIVI 198



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 9/163 (5%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++G+CK       +   +      I LD+  Y+ LI+GLC   +L+ A ELF+K+
Sbjct: 53  IYRIFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKL 112

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+ +++VTYN +IH  + K G+   A  L + +E +    +I  Y+ ++ G C+  +
Sbjct: 113 YQEGLQSDVVTYNIMIH-GFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNK 171

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +E  K L ++ ++ + P  ++ NI+I+ L K     E   LL
Sbjct: 172 SDEVVKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLL 214



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           + L+++M+  G      TY  L+   ++      A  L + L+      +  +Y + +DG
Sbjct: 1   MNLYNEMLQVGKRPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDG 60

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G   EA +  +QL    +   + +YN LI+GLCK G +  A +L  ++ ++G   D
Sbjct: 61  LCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSD 120

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++N +I GF    + D+A+   +K
Sbjct: 121 VVTYNIMIHGFCKVGQVDKANILFEK 146



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L ++  + +   Y I I+G CK+ ++D A        + G   D+  Y++L+ G C  N+
Sbjct: 112 LYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNK 171

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI 82
             E V+L  KM+ + ++ + ++ N +I
Sbjct: 172 SDEVVKLLHKMIQRDMSPDAISCNIVI 198


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y   ++ + K ++I  A+         G    +  Y++L+NGLC   RL+EA++L 
Sbjct: 33  DIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 92

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+V  G T ++VTY  LI    +K+  F A  L + +      L+   Y+ +I GL + 
Sbjct: 93  RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A      ++ +G VP VVT + +I+GLCK G I  A ++   M+ +G  P+   +
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 212

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           + +I G     + D A   L +
Sbjct: 213 SALIHGLCKARKMDCALEMLAQ 234



 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 4/185 (2%)

Query: 24  KIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI +  S  K    +G   DV   S++I+GLC   R+  AV +F  M A+G+    V Y+
Sbjct: 154 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 213

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LIH   + +    A+ +L  +++     +   Y+++IDGLC+ G    AR   D++ E 
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEA 273

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P V TYNILI+G CK G    A  +   M    C P+  ++ T+I G   + +  +A
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA 333

Query: 200 SSFLK 204
           S + +
Sbjct: 334 SLYYQ 338



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ING+ K   +  A          G  +D+  Y+++++ L    +++EAV L +K+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G T  + TYN L+ +   K GR   A+ LL+ +  +    ++  Y+ +IDGL +  R
Sbjct: 61  TANGCTPTIATYNALL-NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA K   +++ +GL    V Y  LI GL + G I +A  +   M  +GC PD  + +T
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 186 VIQGF 190
           +I G 
Sbjct: 180 MIDGL 184



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQ 99
            +S LINGL     L +A  L  +    G T ++ TY  ++  +W  + +    A+AL++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIV--DWLAKNKKIQEAVALME 58

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +  +     I  Y+ +++GLC++GR EEA   L ++ + G  P VVTY  LI+GL KK 
Sbjct: 59  KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKK 118

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              EA KL  +M  +G   D+  +  +I+G L   +  +ASS  K
Sbjct: 119 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYK 163



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G+CK R++D A+      KK  C  D   Y+ LI+GLC    +  A   FD+M
Sbjct: 211 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEM 270

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++ TYN LI    +     +A  +   +   +   N+  Y  +I GLC+  + 
Sbjct: 271 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQL 330

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A      + E+G  P    Y+ L++GLCK G +     L  +M+  G   +S +   +
Sbjct: 331 TKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG-VANSQTRTRL 389

Query: 187 IQGFLVKNETDRASSFL 203
           I      N  D A S  
Sbjct: 390 IFHLCKANRVDEAVSLF 406



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%)

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           T++ LI+   +      A +L Q    +   ++I  Y+ ++D L +  + +EA   ++++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +  G  P + TYN L+NGLCK G + EA  LL ++ + GC PD  ++ ++I G   K  +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 197 DRASSFLKK 205
             A    K+
Sbjct: 121 FEAYKLFKE 129



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN 54
           ++ E   K + + Y I I+G CK    D+A      +    C  +V  Y +LI+GLC   
Sbjct: 269 EMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRR 328

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVY 113
           +L +A   +  M  +G   +   Y+ L+ D   K G+     +L   +ER     N +  
Sbjct: 329 QLTKASLYYQHMKERGCPPDSFVYSSLV-DGLCKSGKLEGGCMLFDEMERSGVA-NSQTR 386

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           + +I  LC+  R +EA    + + ++G+ P    YN +I+ L K G + E   +  +M
Sbjct: 387 TRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++  A         +G   +  VY +LI+G C   +L EA  +F
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM  +G    + TY+ LI D   K  R   A+ +L  +  +    N+ +Y+ +IDGLC+
Sbjct: 695 TKMSERGYGPNVYTYSSLI-DRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG+ +EA + +  + EKG  P VVTY  +I+G  K G + +  +L+ QM  KGC P+  +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D A   L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           ++F Y +L++GLC  +++KEA +L D M  +G     + Y+ LI D + K G+   A  +
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI-DGFCKVGKLDEAQMV 693

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              +    Y  N+  YS +ID L +  R + A K L ++ E    P V+ Y  +I+GLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   EA +L+  M+EKGC P+  ++  +I GF    + D+    +++
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQ 801



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   ++D+A           +  DVF Y+ LI+  C   
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A + FD+MV  G    +VTY  LIH   + +   SA  L + +  +    N+  Y+
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYT 589

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------VTYNILINGLCKK 158
            +IDG C+ G+ E+A +   ++     +P V                 TY  L++GLCK 
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + EA  LL  M  +GC P+   ++ +I GF    + D A     K
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK+ ++D A        ++G   +V+ YSSLI+ L    RL  A+++ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+       ++ Y  +I D   K G+   A  L+  +E      N+  Y+ +IDG  +
Sbjct: 730 SRMLENSCAPNVIIYTEMI-DGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++  + + Q+  KG  P  VTY +LIN  C  G++ +A +LL +MK+         
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAG 848

Query: 183 FNTVIQGF 190
           +  VI+GF
Sbjct: 849 YRKVIEGF 856



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 12  FHVYGIRINGMC---KIREID----SAIKKGICLDVFVY------SSLINGLCTFNRLKE 58
           + VY I I G+C   K+  +D    +    G  LD  V       S+L   LC   + ++
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +  +M+++G   +  TY+ +I          +A  L + ++ +    ++  Y+++ID
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+VG  ++ARK  D++   G  P VVTY  LI+   K   +  A++L   M  +GC P
Sbjct: 524 SFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP 583

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  ++  +I G     + ++A
Sbjct: 584 NVVTYTALIDGHCKSGQIEKA 604



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQ 99
             Y++L+      +RL  A  +  +M   G   +  T    +H    K GR+  A+AL+ 
Sbjct: 233 LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVH-LLCKAGRWREALALI- 290

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
             E+++++L+  +Y+ +I GLC    +EEA   L ++     +P VVTY IL+ G  +K 
Sbjct: 291 --EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +    ++L  M  +GC+P    FN++I  +    +   A   LKK
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A +       KG   +V  Y+++I+G     +
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + +EL  +M A+G     VTY  LI+          A  LL  +++  +  ++  Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G  R   +  +   LD+++E   VP +  Y ILI+  CK G +  A +L  +M    
Sbjct: 852 VIEGFNR--EFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 176 CF--PDSTSFNTVIQGFLVKNETDRA 199
            +   D   ++++I+   + ++ D+A
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAIKKG-ICLDVFVYSSLINGLCTFNRLK 57
           ++++  F  + +  G  ++ +CK    RE  + I+K    LD  +Y+ +I+GLC  +  +
Sbjct: 257 EMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA++   +M +      +VTY  L+     K+       +L  +  +    +  +++ +I
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              CR G +  A K L ++ + G  PG V YNILI G+C    +   D L +  K  G
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 42  VYSSLINGLCTFNRLK--EAVELFDKMVAQGITAELVTYNPLIHDNWEK----QGRFS-A 94
           VY+ LI G+C   +L   + +EL +K   + + A +V  N +   N  +     G+F  A
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVL-NKVNVSNLARCLCGAGKFEKA 464

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            ++++ +    +  +   YS VI  LC   + + A    +++    +VP V TY ILI+ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            CK G++ +A K   +M   GC P+  ++  +I  +L   +   A+   +
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 42/201 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY I I G+CK + ID   +       KG C D + Y SLI+      ++ EA  L D M
Sbjct: 748 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM 807

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+   +V YN L                                   I+GLC+ G  
Sbjct: 808 INAGLVPNIVVYNAL-----------------------------------INGLCKSGNL 832

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + AR+  ++L+ KGL P VVTYN LI+G CK G   EA +L  +M+E+G  P S +++T+
Sbjct: 833 DRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTL 892

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           I G  ++ +++++   L + M
Sbjct: 893 IHGLYMEGKSEQSVGLLNEMM 913



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 7/179 (3%)

Query: 19  INGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK+  ++ A +  + +       D + Y++L++G C      +A +L D+M  +G+
Sbjct: 403 INGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGV 462

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTYN L+ + +       A+ +   + +     N   Y  ++D   +VG ++ A  
Sbjct: 463 NFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMM 522

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                  KG    +  YN +I G CK   +++A ++ ++MKE G  PD  ++ T+I G+
Sbjct: 523 IWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGY 581



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 2/176 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+ KG    + +Y+++I G C   +L +A E+F KM   G   + +TY  LI D + K G
Sbjct: 527 ALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLI-DGYCKVG 585

Query: 91  RF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A+ L    ERD    + E+Y+ +I G+ R    ++    L ++  + L P VVTY 
Sbjct: 586 NLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYG 645

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LI G C KGM+ +A     +M +KG  P+    + ++       + D A+  L +
Sbjct: 646 SLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQ 701



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLE 102
           +SL++ L       +A+ ++++M+A GI  ++ +Y  ++ + + K+GR   A   ++ +E
Sbjct: 225 NSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV-NAYCKEGRVDEAFNFVKEME 283

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R   E N+  Y+ +IDG   +G    A+K L  +SEKG+     TY +LI G CK+G + 
Sbjct: 284 RSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQME 343

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +A+KL+  M EK  F D   +  +I  +      D A
Sbjct: 344 QAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDA 380



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I +N  CK   +D A      +++  C  +V  Y+SLI+G  +   +  A ++   M 
Sbjct: 259 YTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMS 318

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +GI     TY  LI    ++     A  L+  +      ++  VY ++I   C  GR +
Sbjct: 319 EKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVD 378

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +  D + + GL    V  N LING CK G + +A ++LV MK+    PDS  +NT++
Sbjct: 379 DALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLL 438

Query: 188 QGF 190
            GF
Sbjct: 439 DGF 441



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKK-GICLDVFVYSSLINGLCTFN 54
           D   + F  +  +Y   I G CK+ ++  A      +K+ G   D   Y +LI+G C   
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA++L D     GI++    YN LI   +  +       LL  ++  +   N+  Y 
Sbjct: 586 NLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYG 645

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +I G C  G  ++A     ++ +KG+ P ++  + +++ L + G I EA+ +L Q+ +
Sbjct: 646 SLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIAD 704



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           K A+ +FD M   G    L + N L+ +  +    F A+ + + +       +I  Y+++
Sbjct: 203 KFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIM 262

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  C+ GR +EA   + ++      P VVTYN LI+G    G +  A K+L  M EKG 
Sbjct: 263 VNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGI 322

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
             +S ++  +I+G+  + + ++A   +
Sbjct: 323 PENSRTYTLLIKGYCKRGQMEQAEKLI 349



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+       N  VY   ING+CK   +D A        +KG+   V  Y++LI+G C   
Sbjct: 806 DMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGG 865

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH 83
           R  EA+EL DKM  +GI    +TY+ LIH
Sbjct: 866 RTTEALELKDKMREEGICPSSITYSTLIH 894



 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 47/101 (46%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           ++  +  V+ +++      G  + A    D + + G VP + + N L++ L + G   +A
Sbjct: 181 EFSFSPTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKA 240

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +  QM   G  PD  S+  ++  +  +   D A +F+K+
Sbjct: 241 LLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKE 281


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++  A         +G   +  VY +LI+G C   +L EA  +F
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM  +G    + TY+ LI D   K  R   A+ +L  +  +    N+ +Y+ +IDGLC+
Sbjct: 695 TKMSERGYGPNVYTYSSLI-DRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG+ +EA + +  + EKG  P VVTY  +I+G  K G + +  +L+ QM  KGC P+  +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D A   L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           ++F Y +L++GLC  +++KEA +L D M  +G     + Y+ LI D + K G+   A  +
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI-DGFCKVGKLDEAQMV 693

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              +    Y  N+  YS +ID L +  R + A K L ++ E    P V+ Y  +I+GLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   EA +L+  M+EKGC P+  ++  +I GF    + D+    +++
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQ 801



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   ++D+A           +  DVF Y+ LI+  C   
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A + FD+MV  G    +VTY  LIH   + +   SA  L + +  +    N+  Y+
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYT 589

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------VTYNILINGLCKK 158
            +IDG C+ G+ E+A +   ++     +P V                 TY  L++GLCK 
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + EA  LL  M  +GC P+   ++ +I GF    + D A     K
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK+ ++D A        ++G   +V+ YSSLI+ L    RL  A+++ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+       ++ Y  +I D   K G+   A  L+  +E      N+  Y+ +IDG  +
Sbjct: 730 SRMLENSCAPNVIIYTEMI-DGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++  + + Q+  KG  P  VTY +LIN  C  G++ +A +LL +MK+         
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAG 848

Query: 183 FNTVIQGF 190
           +  VI+GF
Sbjct: 849 YRKVIEGF 856



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 12  FHVYGIRINGMC---KIREID----SAIKKGICLDVFVY------SSLINGLCTFNRLKE 58
           + VY I I G+C   K+  +D    +    G  LD  V       S+L   LC   + ++
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +  +M+++G   +  TY+ +I          +A  L + ++ +    ++  Y+++ID
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+VG  ++ARK  D++   G  P VVTY  LI+   K   +  A++L   M  +GC P
Sbjct: 524 SFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP 583

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  ++  +I G     + ++A
Sbjct: 584 NVVTYTALIDGHCKSGQIEKA 604



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQ 99
             Y++L+      +RL  A  +  +M   G   +  T    +H    K GR+  A+AL+ 
Sbjct: 233 LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVH-LLCKAGRWREALALI- 290

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
             E+++++L+  +Y+ +I GLC    +EEA   L ++     +P VVTY IL+ G  +K 
Sbjct: 291 --EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +    ++L  M  +GC+P    FN++I  +    +   A   LKK
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLK 57
           ++++  F  + +  G  ++ +CK      A+    K+   LD  +Y+ +I+GLC  +  +
Sbjct: 257 EMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA++   +M +      +VTY  L+     K+       +L  +  +    +  +++ +I
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              CR G +  A K L ++ + G  PG V YNILI G+C    +   D L +  K  G
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A +       KG   +V  Y+++I+G     +
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + +EL  +M A+G     VTY  LI+          A  LL  +++  +  ++  Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G  R   +  +   LD+++E   VP +  Y ILI+  CK G +  A +L   M    
Sbjct: 852 VIEGFNR--EFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCT 909

Query: 176 CF--PDSTSFNTVIQGFLVKNETDRA 199
            +   D   ++++I+   + ++ D+A
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 42  VYSSLINGLCTFNRLK--EAVELFDKMVAQGITAELVTYNPLIHDNWEK----QGRFS-A 94
           VY+ LI G+C   +L   + +EL +K   + + A +V  N +   N  +     G+F  A
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVL-NKVNVSNLARCLCGAGKFEKA 464

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            ++++ +    +  +   YS VI  LC   + + A    +++    +VP V TY ILI+ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            CK G++ +A K   +M   GC P+  ++  +I  +L   +   A+   +
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 9/207 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  Q  K +   Y + ++ +CK   ID A+         G+  D+  YS LI+GLC    
Sbjct: 401 MLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGA 460

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA+EL+++M ++ I       + +I   +EK     A     ++ +      I +Y++
Sbjct: 461 VEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNI 520

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  ++G   EA +   Q+ EKG+ P +VT+N LI G CKKG + EA KLL  +K  G
Sbjct: 521 MIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHG 580

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
             P S ++ T++ G+    E D  S F
Sbjct: 581 LVPTSVTYTTLMNGYC--EEGDMHSMF 605



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I+G  K+  I  A++       KGI   +  ++SLI G C   +L EAV+L D +
Sbjct: 517 LYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTI 576

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G+    VTY  L++   E+    S   +L  +E    +     Y++V+ GLC+ GR 
Sbjct: 577 KVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRL 636

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            E+ + L  +  +GL P  +TYN +I   CK   + +A +L  QM +    P   ++N +
Sbjct: 637 HESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVL 696

Query: 187 IQGFLVKNETDRASSFL 203
           I G  V      A   L
Sbjct: 697 INGLCVYGNLKDADRLL 713



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 42/227 (18%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK+  +D A       IK G+  DV+ Y+ L++GLC    ++EA+E  + M   G+
Sbjct: 277 MSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGV 336

Query: 72  TAELVTYN---------PLIHDNWEKQGRF--------------------------SAMA 96
             ++VTYN          LI   W+   R                            +  
Sbjct: 337 EPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFK 396

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L + +     +L+I  Y++++  LC+ GR +EA   L ++   GL P ++TY++LI+GLC
Sbjct: 397 LKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLC 456

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K+G + EA +L  +M  K  +P+S   + +I G   K     A  + 
Sbjct: 457 KRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYF 503



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G C++  I+ + K       +G+ L +  Y+ L++ LC   R+ EAV L  +M 
Sbjct: 378 YTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEME 437

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  +L+TY+ LIH   ++     A+ L + +   +   N  V S +I GL   G   
Sbjct: 438 VIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 497

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+   D +++  +   ++ YNI+I+G  K G I EA +   Q+ EKG  P   +FN++I
Sbjct: 498 EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557

Query: 188 QGFLVKNETDRASSFL 203
            GF  K +   A   L
Sbjct: 558 YGFCKKGKLAEAVKLL 573



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 46/236 (19%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y + I+G+CK   ++ AI+       K I  + FV S++I+GL     + EA 
Sbjct: 441 LKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQ 500

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVID 118
             FD +    +  E++ YN +I D + K G    +  +  Q +E+      I  ++ +I 
Sbjct: 501 MYFDSVTKSDVAEEIILYNIMI-DGYAKLGNIGEAVRSYKQIIEKG-ISPTIVTFNSLIY 558

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN------------------------- 153
           G C+ G+  EA K LD +   GLVP  VTY  L+N                         
Sbjct: 559 GFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 618

Query: 154 ----------GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                     GLCK+G + E+ +LL  M  +G FPD  ++NTVIQ F   ++  +A
Sbjct: 619 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKA 674



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + + G+CK   +  +++       +G+  D   Y+++I   C  + L++A +L ++M+
Sbjct: 623 YTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQML 682

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +    VTYN LI+          A  LL TL+     L    Y+ +I   C  G  +
Sbjct: 683 QHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQ 742

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            A     Q+ E+G    +  Y+ +IN LCK+ +I +A      M   G  PD
Sbjct: 743 NALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPD 794



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG C+  ++ S          K I      Y+ ++ GLC   RL E+V+L   M 
Sbjct: 588 YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY 647

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           A+G+  + +TYN +I    +      A  L   + +   + +   Y+++I+GLC  G  +
Sbjct: 648 ARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLK 707

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + L  L ++ +    V Y  +I   C KG +  A     QM E+G       ++ VI
Sbjct: 708 DADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVI 767

Query: 188 QGFLVKNETDRASSFL 203
                +N    A  F 
Sbjct: 768 NRLCKRNLITDAKFFF 783



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG--- 90
            G+  + +    LI+GLC  +RL++AV    +   +     +V++N L+   + K G   
Sbjct: 229 SGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALM-SGFCKMGSVD 287

Query: 91  ---RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
               F  M +   L  D Y  NI     ++ GLC  G  EEA +  + +   G+ P +VT
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNI-----LLHGLCVAGSMEEALEFTNDMENHGVEPDIVT 342

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           YNIL NG    G+I  A K++ +M   G  PD  ++  +I G
Sbjct: 343 YNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICG 384



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)

Query: 51  CTFNR---LKEAVELFDKMVAQGITAELVTYNPLIHD------NWEKQGRFSAMALLQTL 101
           C ++R   + +A+ +  KM    +   + TYN L+++       W+      A  + Q  
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQ-- 233

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  N     ++IDGLCR  R ++A   L +   +   P VV++N L++G CK G +
Sbjct: 234 -------NEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSV 286

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             A      M + G  PD  S+N ++ G  V    + A  F
Sbjct: 287 DVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEF 327



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           ++++++ A G+     T NP++ D   +Q R   A+  L+    +++  ++  ++ ++ G
Sbjct: 221 DVYNEIKASGVPQNEYT-NPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSG 279

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C++G  + A+     + + GL+P V +YNIL++GLC  G + EA +    M+  G  PD
Sbjct: 280 FCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339

Query: 180 STSFNTVIQGF 190
             ++N +  GF
Sbjct: 340 IVTYNILANGF 350



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 7/196 (3%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+G+C+   +  A+        +     V  +++L++G C    +  A   F  M+  
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  ++ +YN L+H          A+     +E    E +I  Y+++ +G   +G    A
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K + ++   GL P +VTY ILI G C+ G I E+ KL  +M  +G      ++  ++  
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 190 FLVKNETDRASSFLKK 205
                  D A   L +
Sbjct: 420 LCKSGRIDEAVILLHE 435



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I   CK  ++  A       ++  +      Y+ LINGLC +  LK+A  L   + 
Sbjct: 658 YNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQ 717

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            Q I    V Y  +I  +  K    +A+     +    +E++I  YS VI+ LC+     
Sbjct: 718 DQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLIT 777

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           +A+     +   G+ P      +++N   + G      ++   M + G  P
Sbjct: 778 DAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   +  AI+        G   +   Y++L+ GLC    L ++++L D++ 
Sbjct: 137 YTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLT 196

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   AM LL  +     E N+  Y++++ GLC+ GR E
Sbjct: 197 KKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTE 256

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA K   +L  KG  P VV++NIL+  LC +G   EA++LL +M ++   P   ++N +I
Sbjct: 257 EAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILI 316

Query: 188 QGFLVKNETDRA 199
               +   T++A
Sbjct: 317 TSLSLNGRTEQA 328



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 9/188 (4%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y   + G+C        ++ +D   KKG+  + F YS L+        + EA+
Sbjct: 165 FPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAM 224

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +L D ++A+G    LV+YN L+     K+GR   A+ L Q L    +  ++  +++++  
Sbjct: 225 KLLDDIIAKGGEPNLVSYNVLL-TGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRS 283

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GRWEEA + L ++ ++   P VVTYNILI  L   G   +A K+L +M   G    
Sbjct: 284 LCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKAS 343

Query: 180 STSFNTVI 187
           +TS+N +I
Sbjct: 344 ATSYNPII 351



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 92/173 (53%)

Query: 27  EIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
            ++  + KG   +V   + L+  LC FN+ ++AV + + MV  GI  +  +Y  L++   
Sbjct: 86  HLEYLVGKGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLC 145

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           ++     A+ L++ +E   +  N   Y+ ++ GLC  G   ++ + LD+L++KGL+P   
Sbjct: 146 KRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAF 205

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           TY+ L+    K+  + EA KLL  +  KG  P+  S+N ++ G   +  T+ A
Sbjct: 206 TYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEA 258



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 17/196 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           LT++    N   Y   +    K R +D A+K       KG   ++  Y+ L+ GLC   R
Sbjct: 195 LTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGR 254

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNI 110
            +EA++LF ++  +G +  +V++N L+        WE+     A  LL  ++++    ++
Sbjct: 255 TEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEE-----ANELLAEMDKEDQPPSV 309

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++I  L   GR E+A K LD+++  G      +YN +I  LCK+G +    K L Q
Sbjct: 310 VTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLKCLDQ 369

Query: 171 MKEKGCFPDSTSFNTV 186
           M  + C P+  +++ +
Sbjct: 370 MIHRRCHPNEGTYSAI 385



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYS---------SLINGLCT 52
           ++T   FK +   Y   I  +CK  ++D  +K   CLD  ++          S I+ L  
Sbjct: 334 EMTRSGFKASATSYNPIIARLCKEGKVDLVLK---CLDQMIHRRCHPNEGTYSAISMLSE 390

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +++EA  +   + ++        Y  LI     K   + A  +L  + +  +  +   
Sbjct: 391 QGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYT 450

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I G+CR G  +EA K    L E    P +  YN LI G CK      + ++ + M 
Sbjct: 451 YSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMV 510

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KGC P+  ++  +++G   + ETD A+  +K+
Sbjct: 511 NKGCVPNENTYTILVEGLAFEEETDIAADLMKE 543



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 82/275 (29%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC--- 51
           D+  +  + N   Y + + G+CK    + AIK       KG    V  ++ L+  LC   
Sbjct: 229 DIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEG 288

Query: 52  ----------------------TFN----------RLKEAVELFDKMVAQGITAELVTYN 79
                                 T+N          R ++A ++ D+M   G  A   +YN
Sbjct: 289 RWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYN 348

Query: 80  PLI------------------------HDNWEKQGRFSAMALL-------------QTLE 102
           P+I                        H N   +G +SA+++L             Q+L 
Sbjct: 349 PIIARLCKEGKVDLVLKCLDQMIHRRCHPN---EGTYSAISMLSEQGKVQEAFFIIQSLG 405

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
             +     + Y  +I  LCR G    A + L ++++ G  P   TY+ LI G+C++GM+ 
Sbjct: 406 SKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLD 465

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           EA K+   ++E    PD  ++N +I GF     TD
Sbjct: 466 EALKIFRILEENDHRPDIDNYNALILGFCKAQRTD 500



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 49/86 (56%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+  +  +A + ++ +   G++P   +Y  L+N LCK+G +  A +L+ +M+  G   +
Sbjct: 109 LCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTN 168

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + ++NT+++G  +    +++   L +
Sbjct: 169 TVTYNTLVKGLCMHGNLNQSLQLLDR 194



 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTF 53
           +++T+  F  + + Y   I GMC+   +D A+K    L       D+  Y++LI G C  
Sbjct: 437 YEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKA 496

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLI 82
            R   ++E+F  MV +G      TY  L+
Sbjct: 497 QRTDLSIEIFLMMVNKGCVPNENTYTILV 525


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 7/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D   + F+ N  VY   I+G C + +++ A+         G   +V  Y+ LI+G C   
Sbjct: 202 DAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSR 261

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A+ LF +MV  G+   +VTY  LI           A  LLQ++E      N    S
Sbjct: 262 KLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCS 321

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID LC+  R  EA+  L  L +KG+    + Y  LI+GLCK G    AD+L+  +  +
Sbjct: 322 VLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQ 381

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  PD+ +++++I G   + E   A   L   M
Sbjct: 382 GFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN  C         R + S ++ G   D   Y+S + G C    L  A  LF
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +G      TY  L+H          AM++   ++ D    +  VY+ ++ GLC  
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGA 190

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  EA   L     +G  P VV YN LI+G C  G +  A  +  +M   GC P+  ++
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTY 250

Query: 184 NTVIQGFLVKNETDRA 199
             +I GF    + DRA
Sbjct: 251 TELISGFCKSRKLDRA 266



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L ++  K N  VY   I+G+CK        R + + + +G   D   YSSLI+GLC    
Sbjct: 343 LIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKE 402

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EA+ + D M+ +G+    VTY  +I +   + G   +  +L  +     + ++  Y++
Sbjct: 403 LSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTI 462

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +   C  GR E+A   +  + + G+ P +VTYN LI G    G+  +A      M   G
Sbjct: 463 FVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG 522

Query: 176 CFPDSTSFNTVIQGFLVKNET 196
           C P+  S+ TV+   L+K E+
Sbjct: 523 CKPNEESY-TVLLRLLIKKES 542



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            + I+ +CK   +  A       I+KGI ++  VY+SLI+GLC   R   A  L   +V+
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380

Query: 69  QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           QG   +  TY+ LI D   +Q   S AM +L  +     + +   Y+++ID L R    +
Sbjct: 381 QGFVPDAHTYSSLI-DGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGAD 439

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            ++K LD++   G+ P V TY I +   C +G + +A+ +++ M + G  P+  ++N +I
Sbjct: 440 GSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALI 499

Query: 188 QGFLVKNETDRASSFLKK 205
            G+     T +A S  K 
Sbjct: 500 CGYANLGLTSQAFSTFKH 517



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  + H Y   + G C+   +  A +       +G     F Y++L++GLC    ++EA+
Sbjct: 103 FAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAM 162

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F  M A G   +   Y  ++H          A  LL     + +E N+ VY+ +IDG 
Sbjct: 163 SVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGY 222

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG  E A    +++   G  P V TY  LI+G CK   +  A  L  +M + G  P+ 
Sbjct: 223 CNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNV 282

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++  +IQG     + D A   L+ 
Sbjct: 283 VTYTALIQGQCSDGQLDCAYRLLQS 307



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           CL+ F+ +     L     L +      +M A+     L TY  LI+         ++  
Sbjct: 43  CLNAFLMA-----LARHRMLADMESFASRMPAR----NLRTYTTLINAYCLAGDLPASKR 93

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
            L +L R  +  +   Y+  + G CR G    A +    +  +G V    TY  L++GLC
Sbjct: 94  HLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLC 153

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             GM+ EA  +   M+  GC PD   + T++ G      T  A + L   M
Sbjct: 154 GAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAM 204



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  +K  +  ++ +Y+  +  LC  +RL EA  L  +M +  +T     Y  +I     
Sbjct: 566 LEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCR 625

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+  + ++ +  Y   +E Y  +I  LC  G  + A++    +  K      + 
Sbjct: 626 LKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIA 685

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           + ILI+GL +KG + E   LL  M+EK   P    +
Sbjct: 686 WRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALY 721



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 58/255 (22%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K +   Y I +   C    ++ A       +  G+C ++  Y++LI G        +A 
Sbjct: 453 IKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAF 512

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQG------------RFSAMALLQTLERDKYEL 108
             F  MVA G      +Y  L+    +K+             + + M  L  L  +  +L
Sbjct: 513 STFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKL 572

Query: 109 N----IEVYSLVIDGLCRVGRWEEARKKL------------------------------- 133
                I++Y+  +  LCRV R +EA+  L                               
Sbjct: 573 QLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEA 632

Query: 134 ----DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
               D + + G +P + +Y  +I+ LC++G I  A ++   M  K    +  ++  +I G
Sbjct: 633 LTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDG 692

Query: 190 FLVKNETDRASSFLK 204
            L K      SS L 
Sbjct: 693 LLQKGYVAECSSLLS 707



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ + +      +Y   +  +C++  +D A           +     VY+S+I   C   
Sbjct: 568 EMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLK 627

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L EA+   D MV  G   +L +Y  +I    E+    +A  +   +   +Y      + 
Sbjct: 628 MLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWR 687

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           ++IDGL + G   E    L  + EK   P    Y
Sbjct: 688 ILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALY 721


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I  +CK   ++ A       I +G+     VY+SLI+GLCT N+
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 348

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            + A EL  +M+ +GI    + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 349 WERAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTY+ LING CK   + +A  L  +M+  
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS 467

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 468 GVSPDIITYNIILQGLFQTRRTAAA 492



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 42/238 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   I+G C   ++D A K        G+  D   YS+LING C  +R+K+A+ 
Sbjct: 400 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALV 459

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF +M + G++ +++TYN ++   ++ +   +A  L   + +   +L +  Y++++ GLC
Sbjct: 460 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLC 519

Query: 122 -----------------------------------RVGRWEEARKKLDQLSEKGLVPGVV 146
                                              +VGR +EA+      S  GLVP   
Sbjct: 520 KNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYW 579

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           TY ++   +  +G++ E D+L + M++ GC  DS   N +++  L + E  RA ++L 
Sbjct: 580 TYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 637



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLC 51
           FD   +R   +   Y I +NG+C       A++         G C  DV  YS++ING  
Sbjct: 40  FDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               L +    +++M+ Q I+  +VTYN +I    + Q    AM +L T+ +     +  
Sbjct: 100 KEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 159

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++ G C  G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 219

Query: 172 KEKGCFPDSTSFNTVIQGFLVK 193
            ++G  P+ T++ T++QG+  K
Sbjct: 220 TKRGLKPEITTYGTLLQGYATK 241



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D         + + I  +V  Y+S+I  LC    + +A+E+   MV
Sbjct: 91  YSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 150

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 151 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 210

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ ++
Sbjct: 211 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 270

Query: 188 QGFLVKNETDRA 199
             +  + + + A
Sbjct: 271 CAYAKQEKVEEA 282



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 44/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +QR   N   Y   I  +CK + +D A       +K G+  D   Y+S+++G C+  
Sbjct: 113 EMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSG 172

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAM------------ 95
           + KEA+    KM + G+  ++VTYN L+ D   K GR       F +M            
Sbjct: 173 QPKEAIVFLKKMRSDGVEPDVVTYNSLM-DYLCKNGRCTEARKIFDSMTKRGLKPEITTY 231

Query: 96  -----------------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                             LL  + R+    N  V+S+++    +  + EEA     ++ +
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +GL P  VTY  +I  LCK G + +A     QM ++G  P +  +N++I G    N+ +R
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 351

Query: 199 ASSFL 203
           A   +
Sbjct: 352 AEELI 356



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 10/212 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  K     YG  + G      +       D  ++ GI  + +V+S L+     
Sbjct: 216 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAK 275

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             +++EA+ +F KM  QG+    VTY  +I     K GR   AM   + +  +       
Sbjct: 276 QEKVEEAMLVFSKMRQQGLNPNAVTYGAVI-GILCKSGRVEDAMLYFEQMIDEGLSPGNI 334

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +I GLC   +WE A + + ++ ++G+    + +N +I+  CK+G ++E++KL   M
Sbjct: 335 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 394

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              G  PD  +++T+I G+ +  + D A+  L
Sbjct: 395 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA +L   MV+ G+  + VTY+ LI+   + 
Sbjct: 392 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKI 451

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    +++ G    + TY
Sbjct: 452 SRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTY 511

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  +A    ++M +  C  D    + +FN +I   L     D A
Sbjct: 512 NIILHGLCKNKLTDDA----LRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 562



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 37/130 (28%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILING---------------- 154
           Y+++++GLC   R +EA + L  +++ G    P VV+Y+ +ING                
Sbjct: 54  YNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNE 113

Query: 155 -------------------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
                              LCK   + +A ++L  M + G  PD  ++N+++ GF    +
Sbjct: 114 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 173

Query: 196 TDRASSFLKK 205
              A  FLKK
Sbjct: 174 PKEAIVFLKK 183


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   ING CK    D A+K       KG+ LD+  Y +LI+G C   
Sbjct: 618 EMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQ 677

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A  LF +++  G++   V YN LI          +A+ L + +  +    +++ Y+
Sbjct: 678 DIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYT 737

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGL + GR   A     ++S KG++P ++ Y +LINGLC KG +  A K+L +M+  
Sbjct: 738 TLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERD 797

Query: 175 GCFPDSTSFNTVIQG 189
              P+   +N +I G
Sbjct: 798 SITPNVPIYNALIAG 812



 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 12/196 (6%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           E R KG   +   YG  I+G CK ++I++A       +  G+  +  +Y+SLI+G    N
Sbjct: 653 EMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLN 712

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            ++ A+ L  +M+ +GI+ +L TY  LI D   K+GR   A+ L   +       +I +Y
Sbjct: 713 NMEAALNLQKRMLGEGISCDLQTYTTLI-DGLLKEGRLVLALDLYSEMSAKGIIPDIIIY 771

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+GLC  G+ E A+K L ++    + P V  YN LI G  K G + EA +L  +M +
Sbjct: 772 TVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLD 831

Query: 174 KGCFPDSTSFNTVIQG 189
           KG  P+ T+++ +I G
Sbjct: 832 KGLTPNDTTYDILING 847



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ +   K N   Y I ++G  K  +        D  + + I    F Y+  INGLC   
Sbjct: 513 DMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVG 572

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  EA ++  K V +G     +TYN  I D + K+G  S A+   + +       N+  Y
Sbjct: 573 RTSEAQDMLKKFVEKGFVPVCLTYNS-IMDGFIKEGSVSSALTAYREMCESGVSPNVITY 631

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+    + A K  +++  KGL   +  Y  LI+G CKK  I  A  L  ++ +
Sbjct: 632 TTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLD 691

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+S  +N++I G+   N  + A +  K+
Sbjct: 692 GGLSPNSVIYNSLISGYRNLNNMEAALNLQKR 723



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L +     N  +Y   I+G   +  +++A+        +GI  D+  Y++LI+GL    
Sbjct: 688 ELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEG 747

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL  A++L+ +M A+GI  +++ Y  LI+    K    +A  +L  +ERD    N+ +Y+
Sbjct: 748 RLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYN 807

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +I G  + G  +EA +  +++ +KGL P   TY+ILING  K G
Sbjct: 808 ALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGG 852



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 1/177 (0%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  +  G+ ++V V ++L+ G C  ++L  A+E FDKM   G +   VTY  LI  
Sbjct: 334 LRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEW 393

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +      A  L   ++       + + + +I G  +V   EEA K  D+ +    +  
Sbjct: 394 CCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDE-AVACDIAN 452

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           + TYN L++ LCK+G + EA  L  +M +KG  P   S+N++I G   +   D A+S
Sbjct: 453 IFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAAS 509



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 22  MCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           M K  ++ + +K K IC  VF+ +SLI G       +EA +LFD+ VA  I A + TYN 
Sbjct: 400 MAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDI-ANIFTYNS 458

Query: 81  LIHDNWE-KQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSE 138
           L+  +W  K+G+ S    L     DK     +V Y+ +I G CR G  + A      + +
Sbjct: 459 LL--SWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLD 516

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            GL P V+TY+IL++G  K G    A  +  +M ++   P   ++N  I G      T  
Sbjct: 517 CGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSE 576

Query: 199 ASSFLKK 205
           A   LKK
Sbjct: 577 AQDMLKK 583



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I+ING+CK+     A       ++KG       Y+S+++G      +  A+  + +M
Sbjct: 560 TYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREM 619

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G++  ++TY  LI+   +      A+ +   +     EL+I  Y  +IDG C+    
Sbjct: 620 CESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDI 679

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A     +L + GL P  V YN LI+G      +  A  L  +M  +G   D  ++ T+
Sbjct: 680 ETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTL 739

Query: 187 IQGFL 191
           I G L
Sbjct: 740 IDGLL 744



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  +G+ LD   YS +I   C    ++ A  L   M  +G      T+  +I    ++  
Sbjct: 270 AKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGN 329

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ L   +     ++N+ V + ++ G C+  +   A +  D+++E G  P  VTY +
Sbjct: 330 MVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAV 389

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           LI   CK G + +A  L  QMK K   P     N++I+GFL     + AS
Sbjct: 390 LIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEAS 439



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSS----------LINGLCTFNRLK 57
           F  +  +Y   +N   K  +++ AI    C +  V S           L+  L   + + 
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAIG---CFNRLVESDIVPWIKFLNFLLTALVKNDMIY 226

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA E+++KMV +G+  +  T + ++  N +      A       +    +L+   YS+VI
Sbjct: 227 EAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVI 286

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
              C+    E A   L  + +KG VP   T+  +I    K+G ++EA +L  +M   G  
Sbjct: 287 QAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQ 346

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +     T+++G+  +++   A  F  K
Sbjct: 347 MNVVVATTLVKGYCKQDKLVSALEFFDK 374



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 51/104 (49%)

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           + +R  ++ +I +Y+ +++   +  +  +A    ++L E  +VP +   N L+  L K  
Sbjct: 164 STKRFDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKND 223

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           MI EA ++  +M  KG   D  + + +++  L  N  + A  F 
Sbjct: 224 MIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFF 267


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   YG  ++G+CK  ++  A          G   +  VY +LI+G C   +L EA E
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F KMV  G    + TY+ LI D   K  R    + +L  +  +    NI +Y+ +IDGL
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLI-DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +V + +EA K +  + EKG  P VVTY  +I+G  K G + +  +L  +M  KGC P+ 
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++  +I         D A + L++
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEE 845



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 29/224 (12%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   I  +C    +++A          G+  DV+ Y+ LI+       +K+A 
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              D+MV  G    +VTY  LIH   + +    A  L + +       N+  Y+ +IDG 
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604

Query: 121 CRVGRWEE-----ARKKLD--------------QLSEKGLVPGVVTYNILINGLCKKGMI 161
           C+ G  E+     AR + D               ++EK   P VVTY  L++GLCK   +
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK---PNVVTYGALVDGLCKAHKV 661

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A  LL  M   GC P++  ++ +I GF    + D A     K
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHK 705



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   +  G   D   YS +I  LC  +R++ A  LF +M   G+  ++ TY  LI D + 
Sbjct: 477 IHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILI-DCFS 535

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K G    A   L  + RD  E  +  Y+ +I    +  +   A +  + +  KG  P V+
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           TY  LI+G CK G I +A ++  +M+     PD
Sbjct: 596 TYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 13/204 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------------KKGICLDVFVYSSLINGLCTFNR 55
           K  + VY I I  +C   E+   +               G  L+     S    LC F +
Sbjct: 410 KPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK 469

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A ++  +M+  G   +  TY+ +I          +A  L + ++      ++  Y++
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID   + G  ++A   LD++   G  P VVTY  LI+   K   +  A++L   M  KG
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG 589

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           CFP+  ++  +I G+      ++A
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKA 613



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +E++ +  N  +Y+ +I GLC    +EEA   L+++     +P V TY IL+ G   
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  +    ++L  M  +GC+P  T FN+++  +   ++   A   LKK
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKK 403



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 25  IREIDSAIKK--GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           +REI    K+  G  L+V +     NGL        A+E   ++   G     +TYN L+
Sbjct: 194 LREIRGDDKEVLGKLLNVLIRKCCRNGLWNV-----ALEELGRLKDFGYKPTRMTYNALV 248

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI----DGLCRVGRWEEARKKLDQLSE 138
                   R   +   Q + R+  EL + +    +      LC+VG+W EA   L  + +
Sbjct: 249 QVFL----RADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA---LSLIEK 301

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +  VP  + YN +I+GLC+     EA   L +M+   C P+  ++  ++ G L K +  R
Sbjct: 302 EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR 361

Query: 199 ASSFL 203
               L
Sbjct: 362 CKRIL 366



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 14/218 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNR 55
           + ++ F  N  +Y   I+G+C+    + A+      +   C+ +V  Y  L+ G     +
Sbjct: 299 IEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQ 358

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L     +   M+A+G       +N L+H   +      A  LL+ +E+ + +    VY++
Sbjct: 359 LGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNI 418

Query: 116 VIDGLCRVGR------WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +I  +C  G       +E A K  +++   G V   V        LC  G   +A K++ 
Sbjct: 419 LIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +M   G  PD+++++ VI GFL        + FL K M
Sbjct: 479 EMMGNGFVPDTSTYSEVI-GFLCNASRVENAFFLFKEM 515



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 3/168 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ +D F        LC   + +EA+ L +K   +      + YN +I    E      A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEA 327

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M  L  +       N++ Y +++ G     +    ++ L  +  +G  P    +N L++ 
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            CK      A KLL +M++  C P    +N +I       E     +F
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 42/231 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+ K+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD--------------------NWEKQGR---- 91
           + + +ELF +M ++G     VTY  LI+                      W K       
Sbjct: 801 VDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCK 860

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL--SEKG 140
                      ++ LL+ +E++     I +Y ++ID   + GR E A +   ++  +   
Sbjct: 861 VIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMS 920

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +      Y  LI        I  A +L   M   G  PD  +F  ++ G +
Sbjct: 921 MAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLI 971



 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT--AELVTYNPLIHDNWEKQG 90
           K G    + +Y  LI+      RL+ A+EL  ++++  ++  A+   Y  LI+       
Sbjct: 881 KNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASK 940

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
              A  L   + RD    ++  +  ++ GL RV RWEEA +  D L +
Sbjct: 941 IGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F +M 
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 633

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI     TY+ ++   ++ +    A+ L + L     +++I   + +I G+ +  R E
Sbjct: 634 ESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVE 693

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+     +S  GLVP  VTY+I+I  L K+G++ EA+ +   M+  GC PDS   N V+
Sbjct: 694 EAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVV 753

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L KNE  RA ++L K
Sbjct: 754 RELLKKNEIVRAGAYLSK 771



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 4/168 (2%)

Query: 24  KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E     D+   KG   DVF Y+ ++NG  T   L +  +LFD M+  GI  ++ T+N
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 400

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI           AM +   +     + ++  Y  VI  LCR+G+ ++A +K +Q+ ++
Sbjct: 401 VLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ 460

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+VP    Y+ LI G C  G +++A +L+ ++   G   D   F ++I
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSII 508



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 10/203 (4%)

Query: 13  HVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G C      K +E+ S I   G+ LD+  + S+IN LC   R+ +A  +FD 
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            V  G+  + V YN L+ D +   G+   A+ +   +     E N+  Y  +++G C++G
Sbjct: 527 TVNVGLHPDAVVYNMLM-DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 585

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +E      ++ +KG+ P  + YNI+I+GL + G  + A     +M E G   +  +++
Sbjct: 586 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 645

Query: 185 TVIQGFLVKNETDRASSFLKKNM 207
            V++G L KN     + FL K +
Sbjct: 646 IVLRG-LFKNRCFDEAIFLFKEL 667



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++I+G      + +A +LF +MV +GI  +LVTY+ ++H   + +    A A L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +       +   Y+ +I G    G+W+EA +   ++  + ++P VV  N L+  LCK 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+  ++ G+  K
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   V  Y ++I  LC   ++ +A+E F++M+ QG+  +   Y+ LI           A
Sbjct: 426 GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 485

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+  +  +   L+I  +  +I+ LC++GR  +A+   D     GL P  V YN+L++G
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C  G + +A ++   M   G  P+   + T++ G+      D   S  ++
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      ++ I  DV   ++L+  LC + ++KEA ++FD M  +G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +Y  +++    K        L   +  D    +I  ++++I      G  ++A  
Sbjct: 358 NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMI 417

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  +++ +IQGF 
Sbjct: 418 IFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFC 477

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 478 THGSLLKAKELISEIM 493



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 42/205 (20%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ++ +CK R +D A       + KG+  D + Y++LI G  +  
Sbjct: 246 EMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTG 305

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + KEAV +F +M  Q I  ++V  N L                                 
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTL--------------------------------- 332

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +  LC+ G+ +EAR   D ++ KG  P V +Y I++NG   KG +++   L   M   
Sbjct: 333 --MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD 390

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  +FN +I+ +      D+A
Sbjct: 391 GIAPDIYTFNVLIKAYANCGMLDKA 415



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDKMVAQGITAELVTYNPLIHD--NWEK 88
           ++ G+ +D  + S L+ G C   R  EA++ L  +    G   ++ +YN L+    N  K
Sbjct: 140 LRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGK 199

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
            G+   +  +          ++  Y+ VIDG  + G   +A     ++ ++G+ P +VTY
Sbjct: 200 SGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTY 259

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + +++ LCK   + +A+  L QM  KG  PD+ ++N +I G+
Sbjct: 260 SSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGY 301



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           + Y+ L++     +R + A+  F +++  G+  + +  + L+    E +    A+ +L  
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDIL-- 171

Query: 101 LERDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILING 154
           L R   EL    ++  Y++++  LC  G+  +A   L  ++E G V  P VV YN +I+G
Sbjct: 172 LHRTP-ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             K+G + +A  L  +M ++G  PD  ++++V+         D+A +FL++
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK  ++  A         +G   +  VY +LI+G C   +L EA  +F
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KM  +G    + TY+ LI D   K  R   A+ +L  +  +    N+ +Y+ +IDGLC+
Sbjct: 695 TKMSERGYGPNVYTYSSLI-DRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           VG+ +EA + +  + EKG  P VVTY  +I+G  K G + +  +L+ QM  KGC P+  +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           +  +I         D A   L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           ++F Y +L++GLC  +++KEA +L D M  +G     + Y+ LI D + K G+   A  +
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI-DGFCKVGKLDEAQMV 693

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              +    Y  N+  YS +ID L +  R + A K L ++ E    P V+ Y  +I+GLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   EA +L+  M+EKGC P+  ++  +I GF    + D+    +++
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQ 801



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I  +C   ++D+A           +  DVF Y+ LI+  C   
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L++A + FD+MV  G    +VTY  LIH   + +   SA  L + +  +    N+  Y+
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYT 589

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----------------VTYNILINGLCKK 158
            +IDG C+ G+ E+A +   ++     +P V                 TY  L++GLCK 
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + EA  LL  M  +GC P+   ++ +I GF    + D A     K
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G CK+ ++D A        ++G   +V+ YSSLI+ L    RL  A+++ 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+       ++ Y  +I D   K G+   A  L+  +E      N+  Y+ +IDG  +
Sbjct: 730 SRMLENSCAPNVIIYTEMI-DGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++  + + Q+  KG  P  VTY +LIN  C  G++ +A +LL +MK+         
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAG 848

Query: 183 FNTVIQGF 190
           +  VI+GF
Sbjct: 849 YRKVIEGF 856



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 12  FHVYGIRINGMC---KIREID----SAIKKGICLDVFVY------SSLINGLCTFNRLKE 58
           + VY I I G+C   K+  +D    +    G  LD  V       S+L   LC   + ++
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +  +M+++G   +  TY+ +I          +A  L + ++ +    ++  Y+++ID
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+VG  ++ARK  D++   G  P VVTY  LI+   K   +  A++L   M  +GC P
Sbjct: 524 SFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP 583

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  ++  +I G     + ++A
Sbjct: 584 NVVTYTALIDGHCKSGQIEKA 604



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQ 99
             Y++L+      +RL  A  +  +M   G   +  T    +H    K GR+  A+AL+ 
Sbjct: 233 LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVH-LLCKAGRWREALALI- 290

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
             E+++++L+  +Y+ +I GLC    +EEA   L ++     +P VVTY IL+ G  +K 
Sbjct: 291 --EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +    ++L  M  +GC+P    FN++I  +    +   A   LKK
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A +       KG   +V  Y+++I+G     +
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + +EL  +M A+G     VTY  LI+          A  LL  +++  +  ++  Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G  R   +  +   LD+++E   VP +  Y ILI+  CK G +  A +L  +M    
Sbjct: 852 VIEGFNR--EFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 176 CF--PDSTSFNTVIQGFLVKNETDRA 199
            +   D   ++++I+   + ++ D+A
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLK 57
           ++++  F  + +  G  ++ +CK      A+    K+   LD  +Y+ +I+GLC  +  +
Sbjct: 257 EMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           EA++   +M +      +VTY  L+     K+       +L  +  +    +  +++ +I
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              CR G +  A K L ++ + G  PG V YNILI G+C    +   D L +  K  G
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 42  VYSSLINGLCTFNRLK--EAVELFDKMVAQGITAELVTYNPLIHDNWEK----QGRFS-A 94
           VY+ LI G+C   +L   + +EL +K   + + A +V  N +   N  +     G+F  A
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVL-NKVNVSNLARCLCGAGKFEKA 464

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            ++++ +    +  +   YS VI  LC   + + A    +++    +VP V TY ILI+ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            CK G++ +A K   +M   GC P+  ++  +I  +L   +   A+   +
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574


>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Glycine max]
          Length = 555

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
            V  +S++ +GLC   R  EA  LF+ M  +G   +L+ Y+ LI + + K GR   A++ 
Sbjct: 12  SVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLI-NGYCKLGRLEEAISF 70

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ LERD   L I+ YS +I G     R+ EA     ++ +KG+VP VV Y ILI GL  
Sbjct: 71  LRLLERDGLALGIKGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLSS 130

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           +G + EA K+L +M + G  PD+  +N +I+G       DRA S 
Sbjct: 131 EGRVGEAAKMLGEMIQIGLVPDAVCYNEIIKGLCDVGLLDRARSL 175



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+ F+ +   Y + ING CK+  ++ AI       + G+ L +  YSSLI G  +  R
Sbjct: 39  MKERGFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGIKGYSSLIAGFFSARR 98

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA   + +M  +GI  ++V Y  LI      +GR   A  +L  + +     +   Y+
Sbjct: 99  YNEAHAWYGRMFKKGIVPDVVLYTILIR-GLSSEGRVGEAAKMLGEMIQIGLVPDAVCYN 157

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC VG  + AR    ++SE      V T+ I+I  LCK+GM  +A ++  +M++ 
Sbjct: 158 EIIKGLCDVGLLDRARSLQLEISEHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKL 217

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GCFP   +FN ++ G     + + A   L K
Sbjct: 218 GCFPSIVTFNALMDGLCKAGKLEEAHLLLYK 248



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD       +  +C   +L +A +L  ++   G+  ++VTYN LI+   +      A+ L
Sbjct: 269 LDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKL 328

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + ++      N   Y  +IDGL RVGR E+A K    + + G  P    Y  L+  LC+
Sbjct: 329 FKDMQNKGLSPNPVTYGTLIDGLFRVGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCR 388

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K  + +A  L ++  +     +  S N + + F V+ E ++A
Sbjct: 389 KKRVSQAFSLYLEYLKNLRGREDNSINALEECF-VRGEVEQA 429



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 20/222 (9%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGICL-DVFVYSSLINGLCTF 53
            +++E +   N   + I I  +CK       +EI + ++K  C   +  +++L++GLC  
Sbjct: 177 LEISEHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKA 236

Query: 54  NRLKEAVELFDKM-----------VAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQT 100
            +L+EA  L  KM           ++QG    L  V     +    E      A  LL  
Sbjct: 237 GKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQ 296

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           L       +I  Y+++I+G C+      A K    +  KGL P  VTY  LI+GL + G 
Sbjct: 297 LAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFRVGR 356

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             +A K+   M + GC P    +  ++     K    +A S 
Sbjct: 357 EEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSL 398



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           VP V++++ + +GLC      EA +L   MKE+G  PD   ++ +I G+      + A S
Sbjct: 10  VPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAIS 69

Query: 202 FLK 204
           FL+
Sbjct: 70  FLR 72


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 15  YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CK+       + +  AI KG   D F Y SLINGLC  + +  A+ LF+  +
Sbjct: 324 YNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAAL 383

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+   ++ YN LI    ++     A+ ++  +  +    +I  Y+LVI+GLC++G   
Sbjct: 384 GKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVS 443

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   ++    KG VP V T+N LI+G CK+  +    ++L +M   G  PD  ++N+V+
Sbjct: 444 DANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503

Query: 188 QGF--LVKNE 195
            G    VKNE
Sbjct: 504 NGLSKAVKNE 513



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IRI   C+ +   SA++       +G  L+   Y +++ G    N   EA ELF
Sbjct: 145 DVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+  GI  ++ T+N L+H   +K     +  LL  + +     N+  +++ I GLCR 
Sbjct: 205 NDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRK 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   LD +  +GL P VVTYN LI GLCK   ++EA+K L ++   G  PD  ++
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324

Query: 184 NTVIQGF 190
           NT+I G+
Sbjct: 325 NTLIDGY 331



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 43/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++E     +   Y + ING+CK+         ++ AI KG   DVF +++LI+G C   
Sbjct: 416 EMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQL 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++  +++ +KM + G+T +++TYN +++   +       M   +T+       N   Y+
Sbjct: 476 KMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYN 535

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---------------------------- 146
           ++ + LC+ G+  EA   +D++  KG+ P  V                            
Sbjct: 536 ILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQ 595

Query: 147 --------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                   TYNI+IN   +K  +   +KL ++M   GC PD+ ++  +I GF +   TD 
Sbjct: 596 YKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDS 655

Query: 199 ASSFL 203
              FL
Sbjct: 656 GYKFL 660



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  ++ GI  DV  ++ L++ LC    ++E+  L +K++ +G+ + L T+N  I     K
Sbjct: 205 NDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRK 264

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                AM++L ++ R+    ++  Y+ +I GLC+     EA K L +L   GL P   TY
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N LI+G CK GM+  A+K+L     KG  PD  ++ ++I G    +E DRA
Sbjct: 325 NTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 44/223 (19%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I G+C+       +  +DS I++G+  DV  Y++LI GLC  + + EA +  
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYL 309

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS------------------------------ 93
            K+V  G+  +  TYN LI D + K G                                 
Sbjct: 310 HKLVNGGLEPDGFTYNTLI-DGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQ 368

Query: 94  ------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+AL         +  + +Y+++I GLC+ G   +A + ++++SE G    + T
Sbjct: 369 NDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWT 428

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN++INGLCK G + +A+ L+     KG  PD  +FNT+I G+
Sbjct: 429 YNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGY 471



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 35/200 (17%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++  +KKG+C ++F ++  I GLC    L  A+ + D ++ +G+T ++VTYN LI   
Sbjct: 237 RLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGL 296

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            +      A   L  L     E +   Y+ +IDG C++G  + A K L     KG VP  
Sbjct: 297 CKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDE 356

Query: 146 VTYNILIN-----------------------------------GLCKKGMIMEADKLLVQ 170
            TY  LIN                                   GLC++G+I++A +++ +
Sbjct: 357 FTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNE 416

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M E GC  D  ++N VI G 
Sbjct: 417 MSENGCSSDIWTYNLVINGL 436



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ ++  I   C   R   A+ L + MV+QG     V Y  ++   +E+  R  A
Sbjct: 141 GIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEA 200

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L   + R     ++  ++ ++  LC+ G  +E+ + L+++ +KG+   + T+NI I G
Sbjct: 201 YELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQG 260

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+KGM+  A  +L  +  +G  PD  ++NT+I G    +    A  +L K
Sbjct: 261 LCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHK 311



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V  Y++++N L      K+A ++F +M   GI  ++ T+   I      +   SA+ LL 
Sbjct: 111 VLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLN 170

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +     +LN   Y  V+ G        EA +  + +   G+ P V T+N L++ LCKKG
Sbjct: 171 NMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKG 230

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            + E+++LL ++ +KG   +  +FN  IQG   K     A S L
Sbjct: 231 EVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSML 274



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG+ K       +   ++ ++KG   +   Y+ L   LC   ++ EA++L D+++
Sbjct: 499 YNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEIL 558

Query: 68  AQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            +GIT + V++  +I    +N + +G +     +   E+ K       Y+++I+      
Sbjct: 559 NKGITPDTVSFATIISGFANNGDLKGAYQLFRRMG--EQYKVSHTTATYNIMINAFAEKL 616

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
                 K   ++   G  P   TY ++I+G C  G      K L++M EKG  P  T+F 
Sbjct: 617 DLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFG 676

Query: 185 TVIQGFLVKNETDRA 199
            VI    V++    A
Sbjct: 677 RVINCLCVQHRVHEA 691



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I    +CK  +++ A+        KGI  D   ++++I+G      LK A +LF +M 
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMG 593

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            Q  ++    TYN +I+   EK        L   +       +   Y ++IDG C  G  
Sbjct: 594 EQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNT 653

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +   K L ++ EKG +P + T+  +IN LC +  + EA  ++  M   G  P+
Sbjct: 654 DSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAM--ALLQTLERDKYELNIEVYS 114
           +A+E+F+K+  + G    L+TY  +I       G F AM   L +T       L   VY 
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQ-KLGFHGNFVAMENVLAETRMDIDNSLLEGVYI 80

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +    R G+ +EA    +++      P V++YN ++N L + G   +A K+ ++MK  
Sbjct: 81  GAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNV 140

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  PD  +F   I+ F     T R  S L+
Sbjct: 141 GIVPDVYTFTIRIKSFC---RTKRPHSALR 167



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 85  NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++ ++G+   A+ + + ++    E ++  Y+ +++ L   G +++A K   ++   G+VP
Sbjct: 85  SYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVP 144

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            V T+ I I   C+      A +LL  M  +GC  ++ ++ TV+ GF  +N
Sbjct: 145 DVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEEN 195



 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+G C     DS        I+KG    +  +  +IN LC  +R+ EAV++   
Sbjct: 638 YTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHF 697

Query: 66  MVAQGITAELV 76
           MV  GI  E+V
Sbjct: 698 MVHNGIVPEVV 708


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 107/195 (54%), Gaps = 8/195 (4%)

Query: 17  IRINGMCKIR-EIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           + I  +CK    +D+A++       +G     + Y +LI GLC   ++ EA ELF +M  
Sbjct: 160 VLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMET 219

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +  +  +VTY  LIH   + +   SA+ LL+ +     + N+  YS ++DG C+ G    
Sbjct: 220 KACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A + LD +  +  +P ++TY+ L++GLCK+G + EA ++L +MK +G  PD+  +  +I 
Sbjct: 280 ALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339

Query: 189 GFLVKNETDRASSFL 203
           GF    +   A++FL
Sbjct: 340 GFCDICKFHEAANFL 354



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 15/201 (7%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + YG  I G+C++ +I  A +       K     V  Y SLI+GLC    L  A+ L ++
Sbjct: 192 YTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEE 251

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M ++GI   + TY+ L+  + +      A+ LL  +   ++  N+  YS ++ GLC+ G+
Sbjct: 252 MASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGK 311

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF-- 183
            +EA + LD++  +GL P    Y  +I+G C      EA   L +M   G  P+  ++  
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371

Query: 184 -----NTVIQGFLVKNETDRA 199
                N V+QG L     +RA
Sbjct: 372 HVRIHNIVVQG-LCTEHPNRA 391



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 50/226 (22%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+C+ +++DSAI+       KGI  +VF YSSL++G C       A+EL D M
Sbjct: 228 TYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMM 287

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++     ++TY+ L+H    K+G+   A+ +L  ++      +  +Y  +I G C + +
Sbjct: 288 VSRRHLPNMITYSTLVH-GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICK 346

Query: 126 WEEARKKLDQLSEKGLVPGVVTY-------NILINGLC---------------------- 156
           + EA   LD++   G+ P  +T+       NI++ GLC                      
Sbjct: 347 FHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISID 406

Query: 157 ------------KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                        KG + +A  L+ +M   GC PD  ++N V+  F
Sbjct: 407 AKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAF 452



 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           + E G+ P V + N+LI  LCK    M+A  ++  +M  +GC P S ++ T+I G     
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLG 205

Query: 195 ETDRASSFLKK 205
           +   A    K+
Sbjct: 206 KIGEAKELFKE 216



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 3   LTEQRFKGNFHV--YGIRINGMC------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  R   + HV  + I + G+C        +   S   +GI +D   + SL+N  C   
Sbjct: 362 ISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKG 421

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            L +A  L D+MV  G   +  T+N ++   W+++    +  L+Q
Sbjct: 422 DLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELVQ 466


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  YSS+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK       +R  +  I + +     VY+SLI+ LC F++
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI  + + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING CK   + +A  L  +M+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A EL+  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   EL TYN ++H   +      A+ + Q L     +L    ++++I  L +VGR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+     LS  GLVP V TY+++   L ++G++ E D L + M+E GC  +S   N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 187 IQGFLVKNETDRASSFL 203
           ++  L + +  RA ++L
Sbjct: 731 VRKLLQRGDITRAGTYL 747



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTY+ +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI I   C    +D       + IKKG  +D   ++ L+ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    ++     A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I    + ++ D+A   +
Sbjct: 448 NSLIHSLCIFDKWDKAKELI 467



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA +L   MV+ G+  + VTYN LI+   + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    ++E G    + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 623 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  LI  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILI-GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC +    EA +LL  M +
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218



 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
           +TE   +     Y I ++G+CK    D A++  + +C     L+   ++ +I  L    R
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             EA +LF  + A G+  ++ TY+ L+ +N  +QG
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTYS-LMAENLIEQG 703


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +LTE+    + + YG  I+G+CK+ E+ +A         KG+ +   V+++LI+G C   
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA  ++D M  +G  A++ T N  I   + +  R+  A   L  +     +L+   Y
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNT-IASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSY 472

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +ID  C+ G  EEA++   ++S KG+ P  +TYN++I   CK+G I EA KL   M+ 
Sbjct: 473 TNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEA 532

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  PDS ++ ++I G  + +  D A
Sbjct: 533 NGMDPDSYTYTSLIHGECIADNVDEA 558



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 41/211 (19%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +DS +K    + V+  + ++ GLC    ++++ +L  +   +GI  E  TYN +I+  
Sbjct: 214 RMVDSGVK----ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIIN-A 268

Query: 86  WEKQGRFSAM-ALLQTLERDKY-----------------------------------ELN 109
           + KQ  FS +  +L+ +++D                                     E +
Sbjct: 269 YVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESD 328

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           + VY+ +I   CR G  + A    D+L+EKGL P   TY  LI+G+CK G +  A+ L+ 
Sbjct: 329 VHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMN 388

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +M+ KG       FNT+I G+  K   D AS
Sbjct: 389 EMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 5/189 (2%)

Query: 19  INGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           + G+ K+ + D  +   +   + +  S+ NG     ++ +A +LFD+M  +GI +++  Y
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNG-----KMSDAEKLFDEMRERGIESDVHVY 332

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
             LI  N  K     A  L   L       +   Y  +IDG+C+VG    A   ++++  
Sbjct: 333 TSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQS 392

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG+    V +N LI+G C+KGM+ EA  +   M++KG   D  + NT+   F      D 
Sbjct: 393 KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDE 452

Query: 199 ASSFLKKNM 207
           A  +L + M
Sbjct: 453 AKQWLFRMM 461



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 10/196 (5%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           +D+ EQ+ F+ +        +   +++  D A       ++ G+ L    Y++LI+  C 
Sbjct: 422 YDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCK 481

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
              ++EA  LF +M ++G+    +TYN +I+  + KQG+   A  L   +E +  + +  
Sbjct: 482 EGNVEEAKRLFVEMSSKGVQPNAITYNVMIY-AYCKQGKIKEARKLRANMEANGMDPDSY 540

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I G C     +EA +   ++  KGL    VTY ++I+GL K G   EA  L  +M
Sbjct: 541 TYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEM 600

Query: 172 KEKGCFPDSTSFNTVI 187
           K KG   D+  +  +I
Sbjct: 601 KRKGYTIDNKVYTALI 616



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+  +   Y+ +I   C   ++KEA +L   M A G+  +  TY  LIH          
Sbjct: 498 KGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDE 557

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM L   +     + N   Y+++I GL + G+ +EA    D++  KG       Y  LI 
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIG 617

Query: 154 GL 155
            +
Sbjct: 618 SM 619


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 101/167 (60%), Gaps = 4/167 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMA 96
           DV  Y+++I+GLC   RL EA+++F +MV + I   +VTY  +IH  W  ++G F  A+ 
Sbjct: 196 DVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIH--WLAREGCFDDALK 253

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +   + R     N+  YS +IDGLC+ GR   A + LD++ ++  +P ++TY+ +I+GLC
Sbjct: 254 IFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLC 313

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K+ M+ EA ++L +M+ +G  PD+  F  +I G         A+++L
Sbjct: 314 KEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 360



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   +  A       + K I   V  Y+++I+ L       +A+++F +M 
Sbjct: 200 YNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMG 259

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G++  LVTY+ LI D   K GR  SA+ LL  + ++K   N+  YS VIDGLC+    
Sbjct: 260 RRGVSPNLVTYSSLI-DGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHML 318

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            EA + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 319 SEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLH 378

Query: 184 ----NTVIQGFLVKNETDRA 199
               NTV+     K E  RA
Sbjct: 379 ARINNTVLTALCDKGELGRA 398



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 8/175 (4%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+  ++  YSSLI+GLC   R   A+EL D+M+ +     ++TY+ +I    ++    
Sbjct: 260 RRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLS 319

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY---- 148
            AM +L  +     + +  ++  +I GLC  GR  EA   LD++   G+ P  VT+    
Sbjct: 320 EAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHA 379

Query: 149 ---NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
              N ++  LC KG +  A ++    + +    D T+F+ +++ F  KN  ++A+
Sbjct: 380 RINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVESF-SKNNIEKAA 433


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 93/169 (55%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K I  D+ +Y+SLI+GLC   R   A++   +M  +G   ++ TYN L+    +      
Sbjct: 300 KQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDK 359

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ LL  L+    + ++  Y+++I+GLC+ GR ++A K  + L  KG    V TYN +I 
Sbjct: 360 AIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIK 419

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           G CKKG+  E   ++ +MK+ GC PD+ +   +I+    K E D+A  F
Sbjct: 420 GFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDKAGKF 468



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 21/222 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  Q FK N   YG  ING+CK+ +  +A++       K +  DV +Y+++I+GLC    
Sbjct: 108 VVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKL 167

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A  L+ +MVA+ I   +VTYN LI           A+ LL  +  +     +  +S+
Sbjct: 168 VNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSI 227

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-----LCKKG---------MI 161
           +ID  C+ G+ +EA+     + ++ + P +VTYN L++G     + KK          M+
Sbjct: 228 LIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMV 287

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            EA  L  +M  K  +PD   +N++I G      T  A  F+
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFI 329



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 23/215 (10%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK-------- 57
           + + I I+  CK  ++  A       +K+ +  ++  Y+SL++G    N +K        
Sbjct: 223 YTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNT 282

Query: 58  ------EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
                 EA+ LF++M  + I  ++V YN LI D   K GR   A+  +  +       +I
Sbjct: 283 MIKMVDEAMNLFEEMHFKQIYPDMVIYNSLI-DGLCKSGRTPYALKFIGEMHYRGQPPDI 341

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ ++D LC+    ++A + L +L ++G+ P V TYNILINGLCK G + +A+K+   
Sbjct: 342 FTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFED 401

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  KG   D  ++N +I+GF  K   D   + + K
Sbjct: 402 LLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSK 436



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +KKG   D   +++LI GLC    + +A+   DK+VAQG     V+Y  LI+   +    
Sbjct: 74  LKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQT 133

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+  L+ ++    + ++ +Y+ +IDGLC+     +A     ++  K + P VVTYN L
Sbjct: 134 RAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTL 193

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I GLC    + +A  LL +M  +   P   +F+ +I  F
Sbjct: 194 ICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAF 232



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           ++L + +E +    N+   S++I+   ++G+   +      + +KG     +T+  LI G
Sbjct: 32  VSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTTLIKG 91

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC KG I +A     ++  +G   +  S+ T+I G     +T  A  FL++
Sbjct: 92  LCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRR 142



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L +Q  + +   Y I ING+CK   +  A K       KG   DV+ Y+++I G C    
Sbjct: 367 LKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGL 426

Query: 56  LKEAVELFDKMVAQGITA-----ELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
             E + +  KM   G +      E++  +       +K G+F  M +     R+
Sbjct: 427 FDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDKAGKFREMIVRGKCHRE 480


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  YSS+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK       +R  +  I + +     VY+SLI+ LC F++
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI  + + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING CK   + +A  L  +M+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A EL+  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   EL TYN ++H   +      A+ + Q L     +L    ++++I  L +VGR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+     LS  GLVP V TY+++   L ++G++ E D L + M+E GC  +S   N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 187 IQGFLVKNETDRASSFL 203
           ++  L + +  RA ++L
Sbjct: 731 VRKLLQRGDITRAGTYL 747



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTY+ +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI I   C    +D       + IKKG  +D   ++ L+ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    ++     A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I    + ++ D+A   +
Sbjct: 448 NSLIHSLCIFDKWDKAKELI 467



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA +L   MV+ G+  + VTYN LI+   + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    ++E G    + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 623 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  LI  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILI-GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC +    EA +LL  M +
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218



 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
           +TE   +     Y I ++G+CK    D A++  + +C     L+   ++ +I  L    R
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             EA +LF  + A G+  ++ TY+ L+ +N  +QG
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTYS-LMAENLIEQG 703


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 8/201 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---DVFVYSSLINGLCTFNRLKE 58
           ++  ++   +   Y + I+ +CK R I  AI+    +   DV  Y++L+ GLC   R+ +
Sbjct: 35  EMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQ 94

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVI 117
           A  LF  M   GIT   VTY  LI D + K  +F +A  LLQ +   K    +  Y  +I
Sbjct: 95  ACSLFGSMEGAGITPSDVTYTTLI-DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSII 153

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +GLC+  + ++A +  +++   G  P  VTYN LI+GLC K  + EA  LL  M E    
Sbjct: 154 NGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQ 213

Query: 178 PDSTSFNTVIQGFLVKNETDR 198
           PD  +F  +I+G      TDR
Sbjct: 214 PDKITFTALIEGLCT---TDR 231



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 13/207 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
            Q  K N   Y   +  +C+  +ID A        ++ +  DVF Y+ +I+ LC   R+ 
Sbjct: 3   SQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRIS 62

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLV 116
            A+E F+ M       ++VTYN L+     K GR + A +L  ++E      +   Y+ +
Sbjct: 63  RAIEFFETMPE----PDVVTYNTLL-GGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTL 117

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ID  C++ ++E A   L  ++ +   P V +Y  +INGLCK   + +A +L  +MK  GC
Sbjct: 118 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            PD  ++NT+I G  VK     A   L
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLL 204



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 104/269 (38%), Gaps = 75/269 (27%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+C  + +  A       ++     D   +++LI GLCT +R+KEA  LF  M
Sbjct: 183 TYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGM 242

Query: 67  VAQGITAELVT---------------------------------YNPLIHDNWEKQGRFS 93
             QG   +LVT                                 Y P+  +   ++G   
Sbjct: 243 AKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDR 302

Query: 94  AMALLQTLERDKYELNIEVYS-----------------------------------LVID 118
           A  LLQ + R     N+  Y+                                   +++D
Sbjct: 303 AARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVD 362

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+  R + A K +  + + GL P +VTYN L+   C+KG +    +LL  M  +G  P
Sbjct: 363 GFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQP 422

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           D  +++T++ G     + D A SFL   M
Sbjct: 423 DVATWSTLVAGLFRVGQVDAAYSFLNLAM 451



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 9/199 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  CK+ + ++A         +     V+ Y S+INGLC   ++ +A +LF++M
Sbjct: 113 TYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM 172

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   + VTYN LIH    KQ    A  LL  +  + ++ +   ++ +I+GLC   R 
Sbjct: 173 KLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRI 232

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA      ++++G  P +VT+ +L++ LC +  +  A  L V      C      +  +
Sbjct: 233 KEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPA--LSVVRNYPACPEAVILYTPI 290

Query: 187 IQGFLVKNETDRASSFLKK 205
            +    +   DRA+  L+K
Sbjct: 291 FRELGRRRGFDRAARLLQK 309



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A + +  + R+K   ++  Y++VID LC+  R   A +  + + E    P VVTYN L+ 
Sbjct: 29  ACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLG 84

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GLCK G + +A  L   M+  G  P   ++ T+I  F    + + A   L+
Sbjct: 85  GLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQ 135



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 21  GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           GM   RE    +++GI  D+  Y+ L++G C  NRL  A ++   M   G+   +VTYN 
Sbjct: 335 GMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNT 394

Query: 81  LIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+  +  K G+  A+  LL T+     + ++  +S ++ GL RVG+ + A   L+    +
Sbjct: 395 LVGHHCRK-GKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQ 453

Query: 140 G 140
           G
Sbjct: 454 G 454


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y + I   C I   D A+K       K    +V  Y+ LI+ LC   
Sbjct: 290 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 349

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EA  +F KM+  G+   ++T+N LI+   ++    SA  LL  +E+   + NI  Y+
Sbjct: 350 KIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYN 409

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLCRV +  +A   L ++ + GL+P  VTYNIL++G CK+G +  A  +   M   
Sbjct: 410 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 469

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD  +F  +I G       ++A+  L
Sbjct: 470 GLEPDGFTFTALIDGLCKLGRLEQANGIL 498



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YS LI+GLC   RL+EA +L  +MV +G      TY  LI    +      AM +L  +
Sbjct: 267 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  N+  Y+++ID LCR G+ EEA     ++ + GL PG++T+N LING CK+G +
Sbjct: 327 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 386

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + A +LL  M++  C P+  ++N +++G    +++ +A   L++
Sbjct: 387 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 430



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK+  ++ A       +KKGI LD   +++LI+G C   + K+   LF+ MV    
Sbjct: 482 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 541

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
                T+N  +    +      A A+L  + +     ++  ++++I+G CR G    + K
Sbjct: 542 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++ + G  P V TY I+INGLC  G + EA+ +L  M   G  P+  ++  +++  +
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 661

Query: 192 VKNETDRA 199
                DRA
Sbjct: 662 KAGRLDRA 669



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G CK  +++ A          G+  D F +++LI+GLC   RL++A  +   M
Sbjct: 442 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 501

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +GI+ + VT+  LI D   K G+   +  L + +  ++       ++  +D L +  +
Sbjct: 502 VKKGISLDEVTFTALI-DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 560

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA   L ++ + GLVP VVT+ ILI G C+ G    + K+L +MK+ GC P+  ++  
Sbjct: 561 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 620

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       + A + L
Sbjct: 621 IINGLCNNGRVEEAETIL 638



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   + +A       ++ G  LD  V +SL+   C  + L EA  +F+KM 
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 256

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +       VTY+ LIH   E      A  L Q +     + +   Y+++I   C +G  
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 316

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K LD+++ K  VP V TY ILI+ LC++G I EA+ +  +M + G  P   +FN +
Sbjct: 317 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 376

Query: 187 IQGF 190
           I G+
Sbjct: 377 INGY 380



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 19  INGMCK------IREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK        ++ S ++KG C  ++  Y+ L+ GLC  ++  +A  L  ++V  G+
Sbjct: 377 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 436

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + VTYN L+ D + K+G+ + A  +  ++     E +   ++ +IDGLC++GR E+A 
Sbjct: 437 LPDRVTYNILV-DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQAN 495

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  + +KG+    VT+  LI+G CK G   +   L   M E  C   + +FN  +   
Sbjct: 496 GILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 555

Query: 191 LVKNETDRASSFLKKNM 207
               + + A++ L K M
Sbjct: 556 GKDYKLNEANAMLGKMM 572



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 30/219 (13%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I G C+  E   ++K        G   +V+ Y+ +INGLC   R++EA  +   M
Sbjct: 582 THTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM 641

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + G++    TY  L+  +  K GR   A  ++ T+ ++  + N  +YS ++ G      
Sbjct: 642 SSFGVSPNHFTYAVLVKAHV-KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNT 700

Query: 126 WEEARK-----KLDQLS---------------EKGLVPGVVTYNILINGLCKKGMIMEAD 165
              AR       LD  S               +K  VP    YN L+ GLCK+G I+EAD
Sbjct: 701 AIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEAD 760

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +L   M + G FPD  + +++I+ +    + D    F+K
Sbjct: 761 QLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMK 798



 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD-KMVAQGITAELVTYNPLIHDNWEKQG 90
           + +G  L    Y +++N LC  N   +A E+F  K++  G   +      L+  N  +  
Sbjct: 186 VNEGFVLGGIDYRTVVNALCK-NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 244

Query: 91  RFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              A  + + + +++    N   YS++I GLC  GR EEA +   ++ EKG  P   TY 
Sbjct: 245 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 304

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +LI   C  GM  +A K+L +M  K C P+  ++  +I     + + + A+   +K
Sbjct: 305 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 360



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 20  NGMCKIR-EIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           NG+ K+   +D   + G  L    YS+L+  L   N    A  ++ +MV +G     + Y
Sbjct: 138 NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 197

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS- 137
             +++   +     +A      + R  + L+  V + ++   CR     EA +  +++S 
Sbjct: 198 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 257

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           E+   P  VTY+ILI+GLC+ G + EA +L  +M EKGC P + ++  +I+       TD
Sbjct: 258 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 317

Query: 198 RASSFL 203
           +A   L
Sbjct: 318 KAMKML 323



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 91/255 (35%), Gaps = 62/255 (24%)

Query: 11  NFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ING+C   ++ E ++ +      G+  + F Y+ L+       RL  A ++ 
Sbjct: 614 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 673

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE------------ 111
             MV  G       Y+ L+           A AL  T + D   L+ E            
Sbjct: 674 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIK 733

Query: 112 --------VYSLVIDGLCRVGRWEEARKKLDQLSEKGL---------------------- 141
                   +Y+ ++ GLC+ GR  EA +    + + GL                      
Sbjct: 734 KCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNC 793

Query: 142 ------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                       VP   +Y  +I+GL  +G + EA KL+  +       +       I+ 
Sbjct: 794 LEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIE- 852

Query: 190 FLVKNETDRASSFLK 204
           FL+K E D     LK
Sbjct: 853 FLMKEEEDDPDKCLK 867


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F +M 
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 633

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI     TY+ ++   ++ +    A+ L + L     +++I   + +I G+ +  R E
Sbjct: 634 ESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVE 693

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA+     +S  GLVP  VTY+I+I  L K+G++ EA+ +   M+  GC PDS   N V+
Sbjct: 694 EAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVV 753

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L KNE  RA ++L K
Sbjct: 754 RELLKKNEIVRAGAYLSK 771



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 10/203 (4%)

Query: 13  HVYGIRINGMC------KIREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G C      K +E+ S I   G+ LD+  + S+IN LC   R+ +A  +FD 
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            V  G+  + V YN ++ D +   G+   A+ +   +     E N+  Y  +++G C++G
Sbjct: 527 TVNVGLHPDAVVYN-MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 585

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R +E      ++ +KG+ P  + YNI+I+GL + G  + A     +M E G   +  +++
Sbjct: 586 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 645

Query: 185 TVIQGFLVKNETDRASSFLKKNM 207
            V++G L KN     + FL K +
Sbjct: 646 IVLRG-LFKNRCFDEAIFLFKEL 667



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 4/168 (2%)

Query: 24  KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E     D+   KG   DVF Y+ ++NG  T   L +  +LFD M+  GI   + T+N
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFN 400

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI           AM +   +     + ++  Y  VI  LCR+G+ ++A +K +Q+ ++
Sbjct: 401 VLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ 460

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+VP    Y+ LI G C  G +++A +L+ ++   G   D   F ++I
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSII 508



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++I+G      + +A +LF +MV +GI  +LVTY+ ++H   + +    A A L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +       +   Y+ +I G    G+W+EA +   ++  + ++P VV  N L+  LCK 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+  ++ G+  K
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   V  Y ++I  LC   ++ +A+E F++M+ QG+  +   Y+ LI           A
Sbjct: 426 GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 485

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+  +  +   L+I  +  +I+ LC++GR  +A+   D     GL P  V YN+L++G
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C  G + +A ++   M   G  P+   + T++ G+      D   S  ++
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G  K  +++ A       +++GI  D+  YSS+++ LC    + +A     +M
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+  +  TYN LI+  +   G++  A+ + + + R     ++   + ++  LC+ G+
Sbjct: 283 VNKGVLPDNWTYNNLIY-GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EAR   D ++ KG  P V +Y I++NG   KG +++   L   M   G  P   +FN 
Sbjct: 342 IKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV 401

Query: 186 VIQGFLVKNETDRA 199
           +I+ +      D+A
Sbjct: 402 LIKAYANCGMLDKA 415



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      ++ I  DV   ++L+  LC + ++KEA ++FD M  +G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +Y  +++    K        L   +  D     I  ++++I      G  ++A  
Sbjct: 358 NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMI 417

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  +++ +IQGF 
Sbjct: 418 IFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFC 477

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 478 THGSLLKAKELISEIM 493



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDKMVAQGITAELVTYNPLIHD--NWEK 88
           ++ G+ +D  + S L+ G C   R  EA++ L  +    G   ++ +YN L+    N  K
Sbjct: 140 LRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGK 199

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
            G+   +  +          ++  Y+ VIDG  + G   +A     ++ ++G+ P +VTY
Sbjct: 200 SGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTY 259

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + +++ LCK   + +A+  L QM  KG  PD+ ++N +I G+
Sbjct: 260 SSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGY 301



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           + Y+ L++     +R + A+  F +++  G+  + +  + L+    E +    A+ +L  
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDIL-- 171

Query: 101 LERDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILING 154
           L R   EL    ++  Y++++  LC  G+  +A   L  ++E G V  P VV YN +I+G
Sbjct: 172 LHRTP-ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             K+G + +A  L  +M ++G  PD  ++++V+         D+A +FL++
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  YSS+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK       +R  +  I + +     VY+SLI+ LC F++
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI  + + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING CK   + +A  L  +M+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A EL+  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   EL TYN ++H   +      A+ + Q L     +L    ++++I  L +VGR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+     LS  GLVP V TY+++   L ++G++ E D L + M+E GC  +S   N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 187 IQGFLVKNETDRASSFL 203
           ++  L + +  RA ++L
Sbjct: 731 VRKLLQRGDITRAGTYL 747



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTY+ +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI +   C    +D       + IKKG  +D   ++ ++ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    +      A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I    + ++ D+A   +
Sbjct: 448 NSLIHSLCIFDKWDKAKELI 467



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA +L   MV+ G+  + VTYN LI+   + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    ++E G    + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 623 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  L+  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILM-GSCCCAGRLDLGFAALGNVIKKGFIVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC      EA +LL  M +
Sbjct: 131 PMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218



 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
           +TE   +     Y I ++G+CK    D A++  + +C     L+   ++ +I  L    R
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             EA +LF  + A G+  ++ TY+ L+ +N  +QG
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTYS-LMAENLIEQG 703


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 10/189 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++ I ++G+CK  ++  A        ++GI  DV  Y+SLI+GLC   R++EA +L + M
Sbjct: 175 LFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETM 234

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V + +   LVTYN LI+   +      A  L++ + +     ++  ++ +I G C+  + 
Sbjct: 235 VKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKI 294

Query: 127 EEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++A + L  L +KGL  P +VTYN+LI+GLC  G   EA +LL +M  +G  PD  ++N+
Sbjct: 295 DKACEVL-HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNS 353

Query: 186 VIQGFLVKN 194
           +I G   +N
Sbjct: 354 LI-GIFCRN 361



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D  +++ L++GLC  N+L EA ++ ++M  +GI  ++VTYN LI D   K  R   A  L
Sbjct: 172 DSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLI-DGLCKSYRMEEARQL 230

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+T+ + K   N+  Y+ +I G C+ G    A + ++++ + G  P VVT+N LI+G C+
Sbjct: 231 LETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQ 290

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  I +A ++L  MK+  C P+  ++N +I G       + A   L +
Sbjct: 291 KSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSE 338



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 13/195 (6%)

Query: 19  INGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+  +ID A      +KKG+C  ++  Y+ LI+GLC   R  EA EL  +M  +GI
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI 344

Query: 72  TAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
             +++TYN LI     N++ +  F    L+  +ER      I   +L +  L +  R++E
Sbjct: 345 LPDIITYNSLIGIFCRNFQIEQAFQIQNLM--VERGVIPDGISYCTLAV-ALLKSERFDE 401

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A   LD + + G +P + T+N L+ GLC    + EA  LL  M+  GC P ++++  ++ 
Sbjct: 402 AFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVT 461

Query: 189 GFLVKNETDRASSFL 203
           G       D A   L
Sbjct: 462 GLCKAGRVDDAKEVL 476



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELF-DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           F  + L+  L    R  +A ++F D+++ Q      +TYN LI    +      A  LL 
Sbjct: 70  FTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLA 129

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            ++   +  ++  +S ++  LC  G    A +   +  E    P  V +NIL++GLCK  
Sbjct: 130 EMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKAN 187

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            + EA +++ +M E+G  PD  ++N++I G       + A   L+
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLE 232



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G C+ G  E A + L ++ E+G  P VVT++ ++  LC  G +  A +   +  
Sbjct: 108 YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESV 167

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E  C PDS  FN ++ G    N+   A   +++
Sbjct: 168 E--CAPDSVLFNILVHGLCKANQLSEARQMIEE 198



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +TYN LI G CK G +  A +LL +MKE+G  PD  + ++++Q         RA  + ++
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165

Query: 206 NM 207
           ++
Sbjct: 166 SV 167


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   YG  ++G+CK  ++  A          G   +  VY +LI+G C   +L EA E
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +F KMV +G    + TY+ LI D   K  R    + +L  +  +    NI +Y+ +IDGL
Sbjct: 702 VFHKMVERGYNPNVYTYSSLI-DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +V + +EA K +  + EKG  P VVTY  +I+G  K G + +  +L  +M  KGC P+ 
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++  +I         D A + L++
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEE 845



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 29/224 (12%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   I  +C    +++A          G+  DV+ Y+ LI+       +K+A 
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              D+MV  G    +VTY  LIH   + +    A  L + +       N+  Y+ +IDG 
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604

Query: 121 CRVGRWEE-----ARKKLD--------------QLSEKGLVPGVVTYNILINGLCKKGMI 161
           C+ G  E+     AR + D               ++EK   P VVTY  L++GLCK   +
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK---PNVVTYGALVDGLCKAHKV 661

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A  LL  M   GC P++  ++ +I GF    + D A     K
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHK 705



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   +  G   D   YS +I  LC  +R++ A  LF +M   G+  ++ TY  LI D + 
Sbjct: 477 IHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILI-DCFS 535

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K G    A   L  + RD  E  +  Y+ +I    +  +   A +  + +  KG  P V+
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           TY  LI+G CK G I +A ++  +M+     PD
Sbjct: 596 TYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 13/204 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------------KKGICLDVFVYSSLINGLCTFNR 55
           K  + VY I I  +C   E+   +               G  L+     S    LC F +
Sbjct: 410 KPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK 469

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A ++  +M+  G   +  TY+ +I          +A  L + ++      ++  Y++
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID   + G  ++A   LD++   G  P VVTY  LI+   K   +  A++L   M  KG
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG 589

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           CFP+  ++  +I G+      ++A
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKA 613



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +E++ +  N  +Y+ +I GLC    +EEA   L+++     +P V TY IL+ G   
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K  +    ++L  M  +GC+P  T FN+++  +   ++   A   LKK
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKK 403



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 25  IREIDSAIKK--GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           +REI    K+  G  L+V +     NGL        A+E   ++   G     +TYN L+
Sbjct: 194 LREIRGDDKEVLGKLLNVLIRKCCRNGLWNV-----ALEELGRLKDFGYKPTRMTYNALV 248

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI----DGLCRVGRWEEARKKLDQLSE 138
                   R   +   Q + R+  EL + +    +      LC+VG+W EA   L  + +
Sbjct: 249 QVFL----RADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA---LSLIEK 301

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +  VP  + YN +I+GLC+     EA   L +M+   C P+  ++  ++ G L K +  R
Sbjct: 302 EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR 361

Query: 199 ASSFL 203
               L
Sbjct: 362 CKRIL 366



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 14/218 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNR 55
           + ++ F  N  +Y   I+G+C+    + A+      +   C+ +V  Y  L+ G     +
Sbjct: 299 IEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQ 358

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L     +   M+A+G       +N L+H   +      A  LL+ +E+ + +    VY++
Sbjct: 359 LGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNI 418

Query: 116 VIDGLCRVGR------WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +I  +C  G       +E A K  +++   G V   V        LC  G   +A K++ 
Sbjct: 419 LIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +M   G  PD+++++ VI GFL        + FL K M
Sbjct: 479 EMMGNGFVPDTSTYSEVI-GFLCNASRVENAFFLFKEM 515



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ +D F        LC   + +EA+ L +K   +      + YN +I    E      A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEA 327

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M  L  +       N++ Y +++ G     +    ++ L  +  +G  P    +N L++ 
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            CK      A KLL +M++  C P    +N +I
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 42/231 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+ K+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD--------------------NWEKQGR---- 91
           + + +ELF +M ++G     VTY  LI+                      W K       
Sbjct: 801 VDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCK 860

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL--SEKG 140
                      ++ LL+ +E++     I +Y ++ID   + GR E A +   ++  +   
Sbjct: 861 VIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMS 920

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +      Y  LI        I  A +L   M   G  PD  +F  ++ G +
Sbjct: 921 MTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLI 971



 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 2/108 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQG 90
           K G    + +Y  LI+      RL+ A+EL  ++++  +  TA+   Y  LI+       
Sbjct: 881 KNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASK 940

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
              A  L   + RD    ++  +  ++ GL RV RWEEA +  D L +
Sbjct: 941 IDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YS LI+GLC   RL+EA +L  +MV +G      TY  LI    +      AM +L  +
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  N+  Y+++ID LCR G+ EEA     ++ + GL PG++T+N LING CK+G +
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 320

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + A +LL  M++  C P+  ++N +++G    +++ +A   L++
Sbjct: 321 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 364



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y + I   C I   D A+K       K    +V  Y+ LI+ LC   
Sbjct: 224 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EA  +F KM+  G+   ++T+N LI+   ++    SA  LL  +E+   + NI  Y+
Sbjct: 284 KIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLCRV +  +A   L ++ + GL+P  VTYNIL++G CK+G +  A  +   M   
Sbjct: 344 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 403

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD  +F  +I G       ++A+  L
Sbjct: 404 GLEPDGFTFTALIDGLCKLGRLEQANGIL 432



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK+  ++ A       +KKGI LD   +++LI+G C   + K+   LF+ MV    
Sbjct: 416 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 475

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
                T+N  +    +      A A+L  + +     ++  ++++I+G CR G    + K
Sbjct: 476 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++ + G  P V TY I+INGLC  G + EA+ +L  M   G  P+  ++  +++  +
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 595

Query: 192 VKNETDRA 199
                DRA
Sbjct: 596 KAGRLDRA 603



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G CK  +++ A          G+  D F +++LI+GLC   RL++A  +   M
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 435

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +GI+ + VT+  LI D   K G+   +  L + +  ++       ++  +D L +  +
Sbjct: 436 VKKGISLDEVTFTALI-DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 494

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA   L ++ + GLVP VVT+ ILI G C+ G    + K+L +MK+ GC P+  ++  
Sbjct: 495 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 554

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       + A + L
Sbjct: 555 IINGLCNNGRVEEAETIL 572



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   + +A       ++ G  LD  V +SL+   C  + L EA  +F+KM 
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 190

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +       VTY+ LIH   E      A  L Q +     + +   Y+++I   C +G  
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K LD+++ K  VP V TY ILI+ LC++G I EA+ +  +M + G  P   +FN +
Sbjct: 251 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 310

Query: 187 IQGF 190
           I G+
Sbjct: 311 INGY 314



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 19  INGMCK------IREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK        ++ S ++KG C  ++  Y+ L+ GLC  ++  +A  L  ++V  G+
Sbjct: 311 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 370

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + VTYN L+ D + K+G+ + A  +  ++     E +   ++ +IDGLC++GR E+A 
Sbjct: 371 LPDRVTYNILV-DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQAN 429

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  + +KG+    VT+  LI+G CK G   +   L   M E  C   + +FN  +   
Sbjct: 430 GILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 489

Query: 191 LVKNETDRASSFLKKNM 207
               + + A++ L K M
Sbjct: 490 GKDYKLNEANAMLGKMM 506



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD-KMVAQGITAELVTYNPLIHDNWEKQG 90
           + +G  L    Y +++N LC  N   +A E+F  K++  G   +      L+  N  +  
Sbjct: 120 VNEGFVLGGIDYRTVVNALCK-NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 178

Query: 91  RFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              A  + + + +++    N   YS++I GLC  GR EEA +   ++ EKG  P   TY 
Sbjct: 179 LGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +LI   C  GM  +A K+L +M  K C P+  ++  +I     + + + A+   +K
Sbjct: 239 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 294



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 48/236 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I G C+  E   ++K        G   +V+ Y+ +INGLC   R++EA  +   M
Sbjct: 516 THTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM 575

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC---- 121
            + G++    TY  L+  +  K GR   A  ++ T+ ++  + N  +YS ++ G      
Sbjct: 576 SSFGVSPNHFTYAVLVKAHV-KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNT 634

Query: 122 ---------------------------------RVGRWEEARKKLDQLSEKGLVPGVVTY 148
                                            R+   + A K  D++ + G VP    Y
Sbjct: 635 AIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCG-VPTEDLY 693

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           N L+ GLCK+G I+EAD+L   M + G FPD  + +++I+ +    + D    F+K
Sbjct: 694 NFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMK 748



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 20  NGMCKIR-EIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           NG+ K+   +D   + G  L    YS+L+  L   N    A  ++ +MV +G     + Y
Sbjct: 72  NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 131

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS- 137
             +++   +     +A      + R  + L+  V + ++   CR     EA +  +++S 
Sbjct: 132 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 191

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           E+   P  VTY+ILI+GLC+ G + EA +L  +M EKGC P + ++  +I+       TD
Sbjct: 192 EESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 251

Query: 198 RASSFL 203
           +A   L
Sbjct: 252 KAMKML 257



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 91/271 (33%), Gaps = 78/271 (28%)

Query: 11  NFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ING+C   ++ E ++ +      G+  + F Y+ L+       RL  A ++ 
Sbjct: 548 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 607

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE------------ 111
             MV  G       Y+ L+           A AL  T + D   L+ E            
Sbjct: 608 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVF 667

Query: 112 ------------------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGL------ 141
                                   +Y+ ++ GLC+ GR  EA +    + + GL      
Sbjct: 668 RLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI 727

Query: 142 ----------------------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                                       VP   +Y  +I+GL  +G + EA KL+  +  
Sbjct: 728 SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 787

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                +       I+ FL+K E D     LK
Sbjct: 788 HTGIEEEVEVTPSIE-FLMKEEEDDPDKCLK 817


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 48/244 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA---- 59
           +  +Y   I+G+CK   ++ A          G+  +V  Y++L+ GLC+ +R +EA    
Sbjct: 286 DVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLL 345

Query: 60  VELFDK-------------------------------MVAQGITAELVTYNPLIHDNWEK 88
            E+FDK                               M+  G   +++TY  +I + + K
Sbjct: 346 AEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVI-NGFCK 404

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G    A+ LL+++       N   Y++V+ GLC   RW +A + + Q+ ++G  P  VT
Sbjct: 405 EGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVT 464

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL---- 203
           +N LIN LCKKG++ +A +LL QM   GC PD  S++TVI G      TD A   L    
Sbjct: 465 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMV 524

Query: 204 KKNM 207
           KK M
Sbjct: 525 KKGM 528



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  R        ++  +  G   ++  +S+LI  LC     +   E+  +M 
Sbjct: 220 YNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMA 279

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G   ++  Y  +I D   K+ R   A  +L  +       N+  Y+ ++ GLC   RW
Sbjct: 280 EHGCAPDVRMYATII-DGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRW 338

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA   L ++ +K      VT+NIL++ LC+ G++    ++L QM E GC PD  ++ TV
Sbjct: 339 EEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTV 398

Query: 187 IQGFLVKNETDRASSFLK 204
           I GF  +   D A   L+
Sbjct: 399 INGFCKEGLIDEAVMLLR 416



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A EL  +M+
Sbjct: 395 YTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMI 454

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G  +
Sbjct: 455 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTD 514

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ + +KG+ P  + Y+ + + L  +G I +  ++   +++     D+  +N VI
Sbjct: 515 EALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVI 574

Query: 188 QGFLVKNETDRASSFL 203
                + ETDRA  FL
Sbjct: 575 SSLCKRGETDRAIEFL 590



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 16/175 (9%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y++++ GLC   R     +L ++MVA G    +VT++ LI       G      L 
Sbjct: 216 DVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLI-------GHLCRNGLF 268

Query: 99  QTLERDKYEL-------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + +     ++       ++ +Y+ +IDG+C+  R E AR  L+++   GL P VV YN L
Sbjct: 269 ERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTL 328

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE-TDRASSFLKK 205
           + GLC      EA+ LL +M +K C  D  +FN ++  FL +N   DR    L++
Sbjct: 329 LKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVD-FLCQNGLVDRVIEVLEQ 382



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN +CK   ++ AI+        G   D+  YS++I+GL       EA+EL + MV +G+
Sbjct: 469 INFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGM 528

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           +   + Y+  I      +GR +  + + + ++      +  +Y+ VI  LC+ G  + A 
Sbjct: 529 SPNTIIYSS-IASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAI 587

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           + L  +   G VP   TY ILI GL  +G + EA ++L ++  KG
Sbjct: 588 EFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 36/203 (17%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           + + Y  L+  LC   R+ +A+ + D M  +G       Y+  +       G   A+ +L
Sbjct: 110 NAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVL 169

Query: 99  QTLE-------------------------------RDKY-----ELNIEVYSLVIDGLCR 122
           + L                                RD       E ++  Y+ V+ GLC 
Sbjct: 170 RDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCM 229

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             RW   +  ++++   G  P +VT++ LI  LC+ G+     ++  QM E GC PD   
Sbjct: 230 ARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRM 289

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + T+I G   +   + A   L +
Sbjct: 290 YATIIDGVCKEERLEVARGILNR 312


>gi|218191264|gb|EEC73691.1| hypothetical protein OsI_08267 [Oryza sativa Indica Group]
          Length = 751

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 23/200 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 543 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT 602

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 603 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 662

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 663 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 722

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            +KG  PD  +F+ + Q  L
Sbjct: 723 IDKGIEPDELTFSVLNQSSL 742



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 29/215 (13%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G+CK   +D A        ++G   DV+ YS LI   C    L +AV+ ++ M
Sbjct: 275 AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAM 334

Query: 67  VAQGI-------------------TAELVTYNPLIHD---NWEKQGRFSAMALLQTLERD 104
           V+ GI                   T+E++ Y     D   + +K    +A  + + + + 
Sbjct: 335 VSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKGEMQNAQQVFEEMLKA 394

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             E +I  Y+++  G C+ G   E    LD+++++GL P  +TY I I G C+ G + EA
Sbjct: 395 NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA 454

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + L   ++EKG       +++++ G+L+   TD A
Sbjct: 455 EVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHA 489



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N   YGI I G C+   +  A        +KGI     +YSS++ G      
Sbjct: 426 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGW 485

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  LF ++  QG   +  + + LI+D         A  + + +       ++  YS 
Sbjct: 486 TDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSK 545

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   C+ G  ++A      + ++GL   V+ Y IL+NG CK G + EA +L VQM   G
Sbjct: 546 LISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLG 605

Query: 176 CFPDSTSFNTVIQGFL 191
             PD  ++  ++ G L
Sbjct: 606 IKPDVIAYTVLLDGHL 621



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 67/126 (53%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV+ ++ +   L    ++ EA++++ +M   G+  +   Y+  +    + +    A  +L
Sbjct: 202 DVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVIL 261

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q + R+K  +    Y++V+DGLC+  R +EA K L+  + +G  P V  Y+ LI   CK 
Sbjct: 262 QEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKM 321

Query: 159 GMIMEA 164
           G +++A
Sbjct: 322 GNLIKA 327



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K  I  D+  Y+ L +G C    + E  +L D+M  QG+    +TY   I   + + G 
Sbjct: 392 LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAI-VGFCRGGN 450

Query: 92  FSAMALLQTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            S   +L  +  +K   +IEV YS ++ G    G  + A     +++ +G +    + + 
Sbjct: 451 LSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSK 510

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LIN LC+ G +  A  +   M E    PD  S++ +I  +    + D+A
Sbjct: 511 LINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKA 559



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 62/149 (41%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++ A ++F++M+   I  ++VTYN L     +         LL  +     E N   Y +
Sbjct: 381 MQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGI 440

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            I G CR G   EA    + + EKG+    V Y+ ++ G    G    A  L V++  +G
Sbjct: 441 AIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQG 500

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              D  S + +I           AS+  K
Sbjct: 501 NLVDHFSCSKLINDLCRVGNVQGASNVCK 529



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 28  IDSAIKKGI-CLDVFVYSSLINGLC---------TFNRL----------KEAVELFDKMV 67
           +D  IK  I C DV     L +G+C         T+N L          +  +  +++M 
Sbjct: 136 VDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMK 195

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +T ++ T+  +    ++ +    A+ +   +     + +   YS  + GLC   +++
Sbjct: 196 CFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCRKYD 255

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A   L +++ + +    + YN++++GLCK+  + EA+KLL     +G  PD   ++ +I
Sbjct: 256 LAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLI 315

Query: 188 QGF 190
           Q +
Sbjct: 316 QSY 318


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 99/183 (54%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++    KG   DV  Y+++++ LC   R  EAV L+++MV +G+  ++V    LI  
Sbjct: 285 LQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFG 344

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             + Q    A  L   +     +LN+ +Y+ +I G  R G  E+A K +  +   G  P 
Sbjct: 345 LCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPD 404

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           VVTYNIL+N  C  GM  +A+ L+ +M+  G  PD  S+N +++G    ++ D+A +F+ 
Sbjct: 405 VVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS 464

Query: 205 KNM 207
            +M
Sbjct: 465 DHM 467



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 9/187 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y I + G+CK  ++D A           G C D+   + LI+  C   ++  A+ LF 
Sbjct: 441 YSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFC-DIVSCNILIDAFCRAKKVNSALNLFK 499

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  +GI A+ VTY  LI+  +       A  L   +   K   N+ VY++++  LC+VG
Sbjct: 500 EMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVG 559

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            ++ A+K   Q+++K + P  VT+N LI  L K    +EA  L  +M+ KG  PD+ +F 
Sbjct: 560 HFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFR 619

Query: 185 TVIQGFL 191
            +I G L
Sbjct: 620 YIISGLL 626



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +C  R    A+       ++G+  DV    +LI GLC   ++ EA EL  +M+
Sbjct: 303 YTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRML 362

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              I   +  YN LI   W       A   +  ++R+  E ++  Y+++++  C +G  +
Sbjct: 363 TLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTD 422

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   + ++   G+ P   +YNIL+ GLCK   + +A   +    E G F D  S N +I
Sbjct: 423 KAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILI 482

Query: 188 QGFLVKNETDRASSFLKK 205
             F    + + A +  K+
Sbjct: 483 DAFCRAKKVNSALNLFKE 500



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 35/210 (16%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+ KG CL  F YS  I  LC  NR++   EL   M   G   +    N  +H       
Sbjct: 221 ALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNR 280

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT--- 147
            + A+ +++ +       ++  Y+ V+  LC   R+ EA    +++  +GL P VV    
Sbjct: 281 LYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGA 340

Query: 148 --------------------------------YNILINGLCKKGMIMEADKLLVQMKEKG 175
                                           YN LI+G  + G I +A K +  M+  G
Sbjct: 341 LIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNG 400

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD  ++N ++  +     TD+A + ++K
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRK 430



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWE 87
            +G+     +Y  L+ G     +    +E FD+MV  G     V YN  I     +  ++
Sbjct: 153 SQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFD 212

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              ++  MAL +      + L    YS  I  LC+  R E   + L  + + G  P    
Sbjct: 213 LVEKYYNMALAK-----GFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWA 267

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            NI ++ LC    + +A +++ +M  KG  PD  ++ TV+ 
Sbjct: 268 CNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVS 308



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI ING+  I          D  +   I  +V VY+ +++ LC     K A ++F +M 
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMT 572

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + ++ + VT+N LI+   +      A+ L + +     E +   +  +I GL   G+  
Sbjct: 573 QKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 128 EARKKLDQLSEKGLV 142
            A +  + + E G++
Sbjct: 633 LAYEIWEYMMENGII 647


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y + I   C I   D A+K       K    +V  Y+ LI+ LC   
Sbjct: 267 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 326

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EA  +F KM+  G+   ++T+N LI+   ++    SA  LL  +E+   + NI  Y+
Sbjct: 327 KIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYN 386

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLCRV +  +A   L ++ + GL+P  VTYNIL++G CK+G +  A  +   M   
Sbjct: 387 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 446

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD  +F  +I G       ++A+  L
Sbjct: 447 GLEPDGFTFTALIDGLCKLGRLEQANGIL 475



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YS LI+GLC   RL+EA +L  +MV +G      TY  LI    +      AM +L  +
Sbjct: 244 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  N+  Y+++ID LCR G+ EEA     ++ + GL PG++T+N LING CK+G +
Sbjct: 304 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 363

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + A +LL  M++  C P+  ++N +++G    +++ +A   L++
Sbjct: 364 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 407



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK+  ++ A       +KKGI LD   +++LI+G C   + K+   LF+ MV    
Sbjct: 459 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 518

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
                T+N  +    +      A A+L  + +     ++  ++++I+G CR G    + K
Sbjct: 519 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++ + G  P V TY I+INGLC  G + EA+ +L  M   G  P+  ++  +++  +
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 638

Query: 192 VKNETDRA 199
                DRA
Sbjct: 639 KAGRLDRA 646



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++G CK  +++ A          G+  D F +++LI+GLC   RL++A  +   M
Sbjct: 419 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 478

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +GI+ + VT+  LI D   K G+   +  L + +  ++       ++  +D L +  +
Sbjct: 479 VKKGISLDEVTFTALI-DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 537

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA   L ++ + GLVP VVT+ ILI G C+ G    + K+L +MK+ GC P+  ++  
Sbjct: 538 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 597

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G       + A + L
Sbjct: 598 IINGLCNNGRVEEAETIL 615



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   + +A       ++ G  LD  V +SL+   C  + L EA  +F+KM 
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 233

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +       VTY+ LIH   E      A  L Q +     + +   Y+++I   C +G  
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 293

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A K LD+++ K  VP V TY ILI+ LC++G I EA+ +  +M + G  P   +FN +
Sbjct: 294 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 353

Query: 187 IQGF 190
           I G+
Sbjct: 354 INGY 357



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 19  INGMCK------IREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK        ++ S ++KG C  ++  Y+ L+ GLC  ++  +A  L  ++V  G+
Sbjct: 354 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 413

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + VTYN L+ D + K+G+ + A  +  ++     E +   ++ +IDGLC++GR E+A 
Sbjct: 414 LPDRVTYNILV-DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQAN 472

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  + +KG+    VT+  LI+G CK G   +   L   M E  C   + +FN  +   
Sbjct: 473 GILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 532

Query: 191 LVKNETDRASSFLKKNM 207
               + + A++ L K M
Sbjct: 533 GKDYKLNEANAMLGKMM 549



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD-KMVAQGITAELVTYNPLIHDNWEKQG 90
           + +G  L    Y +++N LC  N   +A E+F  K++  G   +      L+  N  +  
Sbjct: 163 VNEGFVLGGIDYRTVVNALCK-NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 221

Query: 91  RFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              A  + + + +++    N   YS++I GLC  GR EEA +   ++ EKG  P   TY 
Sbjct: 222 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 281

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +LI   C  GM  +A K+L +M  K C P+  ++  +I     + + + A+   +K
Sbjct: 282 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 337



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 48/236 (20%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I G C+  E   ++K        G   +V+ Y+ +INGLC   R++EA  +   M
Sbjct: 559 THTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM 618

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC---- 121
            + G++    TY  L+  +  K GR   A  ++ T+ ++  + N  +YS ++ G      
Sbjct: 619 SSFGVSPNHFTYAVLVKAHV-KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNT 677

Query: 122 ---------------------------------RVGRWEEARKKLDQLSEKGLVPGVVTY 148
                                            R+   + A K  D++ + G VP    Y
Sbjct: 678 AIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCG-VPTEDLY 736

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           N L+ GLCK+G I+EAD+L   M + G FPD  + +++I+ +    + D    F+K
Sbjct: 737 NFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMK 791



 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 20  NGMCKIR-EIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           NG+ K+   +D   + G  L    YS+L+  L   N    A  ++ +MV +G     + Y
Sbjct: 115 NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 174

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS- 137
             +++   +     +A      + R  + L+  V + ++   CR     EA +  +++S 
Sbjct: 175 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 234

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           E+   P  VTY+ILI+GLC+ G + EA +L  +M EKGC P + ++  +I+       TD
Sbjct: 235 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 294

Query: 198 RASSFL 203
           +A   L
Sbjct: 295 KAMKML 300



 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 91/271 (33%), Gaps = 78/271 (28%)

Query: 11  NFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I ING+C   ++ E ++ +      G+  + F Y+ L+       RL  A ++ 
Sbjct: 591 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 650

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE------------ 111
             MV  G       Y+ L+           A AL  T + D   L+ E            
Sbjct: 651 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVF 710

Query: 112 ------------------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGL------ 141
                                   +Y+ ++ GLC+ GR  EA +    + + GL      
Sbjct: 711 RLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI 770

Query: 142 ----------------------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                                       VP   +Y  +I+GL  +G + EA KL+  +  
Sbjct: 771 SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 830

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                +       I+ FL+K E D     LK
Sbjct: 831 HTGIEEEVEVTPSIE-FLMKEEEDDPDKCLK 860


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 99/183 (54%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++    KG   DV  Y+++++ LC   R  EAV L+++MV +G+  ++V    LI  
Sbjct: 285 LQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFG 344

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             + Q    A  L   +     +LN+ +Y+ +I G  R G  E+A K +  +   G  P 
Sbjct: 345 LCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPD 404

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           VVTYNIL+N  C  GM  +A+ L+ +M+  G  PD  S+N +++G    ++ D+A +F+ 
Sbjct: 405 VVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS 464

Query: 205 KNM 207
            +M
Sbjct: 465 DHM 467



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 9/187 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y I + G+CK  ++D A           G C D+   + LI+  C   ++  A+ LF 
Sbjct: 441 YSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFC-DIVSCNILIDAFCRAKKVNSALNLFK 499

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  +GI A+ VTY  LI+  +       A  L   +   K   N+ VY++++  LC+VG
Sbjct: 500 EMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVG 559

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
            ++ A+K   Q+++K + P  VT+N LI  L K    +EA  L  +M+ KG  PD+ +F 
Sbjct: 560 HFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFR 619

Query: 185 TVIQGFL 191
            +I G L
Sbjct: 620 YIISGLL 626



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +C  R    A+       ++G+  DV    +LI GLC   ++ EA EL  +M+
Sbjct: 303 YTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRML 362

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              I   +  YN LI   W       A   +  ++R+  E ++  Y+++++  C +G  +
Sbjct: 363 TLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTD 422

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   + ++   G+ P   +YNIL+ GLCK   + +A   +    E G F D  S N +I
Sbjct: 423 KAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILI 482

Query: 188 QGFLVKNETDRASSFLKK 205
             F    + + A +  K+
Sbjct: 483 DAFCRAKKVNSALNLFKE 500



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 35/210 (16%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+ KG CL  F YS  I  LC  NR++   EL   M   G   +    N  +H       
Sbjct: 221 ALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNR 280

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT--- 147
            + A+ +++ +       ++  Y+ V+  LC   R+ EA    +++  +GL P VV    
Sbjct: 281 LYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGA 340

Query: 148 --------------------------------YNILINGLCKKGMIMEADKLLVQMKEKG 175
                                           YN LI+G  + G I +A K +  M+  G
Sbjct: 341 LIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNG 400

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C PD  ++N ++  +     TD+A + ++K
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRK 430



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWE 87
            +G+     +Y  L+ G     +    +E FD+MV  G     V YN  I     +  ++
Sbjct: 153 SQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFD 212

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              ++  MAL +      + L    YS  I  LC+  R E   + L  + + G  P    
Sbjct: 213 LVEKYYNMALAK-----GFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWA 267

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            NI ++ LC    + +A +++ +M  KG  PD  ++ TV+ 
Sbjct: 268 CNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVS 308



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 15  YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI ING+  I          D  +   I  +V VY+ +++ LC     K A ++F +M 
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMT 572

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + ++ + VT+N LI+   +      A+ L + +     E +   +  +I GL   G+  
Sbjct: 573 QKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 128 EARKKLDQLSEKGLV 142
            A +  + + E G++
Sbjct: 633 LAYEIWEYMMENGII 647


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  YSS+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI I   C    +D       + IKKG  +D   ++ L+ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    ++     A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTY+ +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N++I    + ++ D+A  +  K
Sbjct: 448 NSLIHSLCIFDKWDKAKDYFLK 469



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  LI  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILI-GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC +    EA +LL  M +
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218


>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
 gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
          Length = 442

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 3/173 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +KKG+ LDV  Y++LI+GL    R  EA E+F+ MV QG   +  TY  +I  ++ K
Sbjct: 170 DEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYG-MIVSHFCK 228

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           QG+  +A  +++ ++    E N  +Y+ ++DG   V R  EA    D +  K ++P +VT
Sbjct: 229 QGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTMLRKMVMPSIVT 288

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRA 199
           YNIL+ GLCK G   +A  +L +M+E+ G  P   S+ T+I G       D A
Sbjct: 289 YNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEA 341



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           V  Y+++IN L   +R  +A+  F++MVA+    +L T+  +I     K G+ + A  + 
Sbjct: 9   VVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVI-TGLCKAGKLNRACEVF 67

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q + R  ++ +I VY+ ++DGL +    +EARK L ++  +G+ P  VTY   I+GLCK 
Sbjct: 68  QEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKN 127

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G + EA KL+   +E G    +   + +  G++++ + + A
Sbjct: 128 GRVEEAGKLV---REMGKMCAAEVLHCIFGGYVLEGKIEEA 165



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 43/231 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q +  +   YG+ ++  CK  ++ +A K        G+  +  +Y+SL++G    NR
Sbjct: 207 MVQQGYVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNR 266

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELNIEVYS 114
            +EA+ ++D M+ + +   +VTYN L+    +  Q   + + L +  ERD     I  Y 
Sbjct: 267 AREAINVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYR 326

Query: 115 LVIDGLCRVGR-----------------------------------WEEARKKLDQLSEK 139
            +I GL + GR                                    +EA + L  +   
Sbjct: 327 TLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRM 386

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G+ P  + YN L+  LC    +  A  +LV+M +  C PD ++F  +  GF
Sbjct: 387 GITPDALAYNALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGF 437



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 39/236 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           +  ++   +   + + I G+CK  +++ A        +KG   D+ VY+SL++GL   + 
Sbjct: 35  MVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASM 94

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRF------------------ 92
           + EA +L  ++V++G+    VTY   I     +   E+ G+                   
Sbjct: 95  MDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFG 154

Query: 93  ---------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                     A+AL   + +    L++  Y+ +I GL  V R +EA++  + + ++G VP
Sbjct: 155 GYVLEGKIEEALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVP 214

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              TY ++++  CK+G +  A K++  M   G   +   +N+++ GFL  N    A
Sbjct: 215 DTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREA 270



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 67/131 (51%)

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           +V Y  +I+  ++      A+A  + +   K + ++  +++VI GLC+ G+   A +   
Sbjct: 9   VVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQ 68

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           +++ KG  P ++ Y  L++GL K  M+ EA KLL ++  +G  P   ++ + I G     
Sbjct: 69  EMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNG 128

Query: 195 ETDRASSFLKK 205
             + A   +++
Sbjct: 129 RVEEAGKLVRE 139



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  ++ +I GLC   +L  A E+F +M  +G   +++ Y  L+    +      A  LL
Sbjct: 43  DLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLL 102

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q +     +     Y+  I GLC+ GR EEA K    + E G +      + +  G   +
Sbjct: 103 QEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGK---LVREMGKMCAAEVLHCIFGGYVLE 159

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G I EA  L  +M +KG   D   +  +I G       D A    +
Sbjct: 160 GKIEEALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFE 205


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 114/209 (54%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK--IREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRL 56
           D+    F      Y + +   C      I+ A++  + I   DV  Y+++I+GLC   RL
Sbjct: 154 DMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIPKPDVCSYNTIIDGLCRRGRL 213

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEVYS 114
            EA+++F +MV + I   +VTY  +IH  W  ++G F  A+ +   + R     N+  YS
Sbjct: 214 AEALDMFSEMVGKCIAPTVVTYTTVIH--WLAREGCFDDALKIFHEMGRRGVSPNLVTYS 271

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ GR   A + LD++ ++  +P  +TY+ +I+GLCK+ M+ EA ++L +M+ +
Sbjct: 272 SLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQ 331

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+  F  +I G         A+++L
Sbjct: 332 GRKPDAGLFGKLIVGLCDAGRAVEAANYL 360



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   +  A       + K I   V  Y+++I+ L       +A+++F +M 
Sbjct: 200 YNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMG 259

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G++  LVTY+ LI D   K GR  SA+ LL  + ++K   N   YS VIDGLC+    
Sbjct: 260 RRGVSPNLVTYSSLI-DGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHML 318

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            EA + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 319 SEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLH 378

Query: 184 ----NTVIQGFLVKNETDRA 199
               NTV+     K E  RA
Sbjct: 379 ARINNTVLTALCDKGELGRA 398



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+  ++  YSSLI+GLC   R   A+EL D+MV +      +TY+ +I    ++    
Sbjct: 260 RRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLS 319

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY---- 148
            AM +L  +     + +  ++  +I GLC  GR  EA   LD++   G+ P  VT+    
Sbjct: 320 EAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHA 379

Query: 149 ---NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
              N ++  LC KG +  A ++    + +    D T+F+ +++ F  KN  ++A+
Sbjct: 380 RINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVESF-SKNNIEKAA 433


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 4/167 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMA 96
           D   Y+++I+GLC   RL EA +LF +M+A G    +VTY  LIH  W  ++  F  A+ 
Sbjct: 42  DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIH--WLAREACFDDALK 99

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   + R     N+  YS +IDGLC+ GR   A + LD++ ++  +P  +TY+ +I+GLC
Sbjct: 100 LFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLC 159

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K+G + +A ++L +M+ +G  PD+  F  +I G         AS++L
Sbjct: 160 KEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 206



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   +  A       I  G    V  Y++LI+ L       +A++LFD+M 
Sbjct: 46  YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMA 105

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   +VTY+ LI D   K GR  SA+ LL  + +++   N   YS VIDGLC+ G  
Sbjct: 106 RRGIMPNVVTYSSLI-DGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCL 164

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            +A + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 165 GQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLH 224

Query: 184 ----NTVIQGFLVKNETDRA 199
               + V+     K E  RA
Sbjct: 225 GRINDAVVTALCSKGEVVRA 244



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 44/210 (20%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   ++GI  +V  YSSLI+GLC   R   AVEL D+MV +      +TY+ +I D   K
Sbjct: 102 DEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVI-DGLCK 160

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G    AM +L  +     + +  ++  +I GLC  GR  EA   LD+++  G+ P  +T
Sbjct: 161 EGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLT 220

Query: 148 YNI-------LINGLCKKGMIMEADKLLVQMKEKG------------------------- 175
           +++       ++  LC KG ++ A ++   M+ +G                         
Sbjct: 221 WSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAA 280

Query: 176 ----------CFPDSTSFNTVIQGFLVKNE 195
                     C P+  +++T+++ +  K +
Sbjct: 281 HVVRDMLSERCIPERETWDTIVRAYWSKKK 310



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           P   +YN +I+GLC++G + EA  L  +M   G  P   ++ T+I 
Sbjct: 41  PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIH 86


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
           +G+ LD   Y++LI GL    ++ +A  ++  M + G   ++VT + +I D   K GR  
Sbjct: 358 RGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI-DGLSKAGRIG 416

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ + +++E      N  VYS +I GLC+  + + A + L Q+ +    P  +TYNILI
Sbjct: 417 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 476

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +GLCK G +  A     +M E GC PD  ++N +I G      TD A   L
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y   +N + K ++I  A+         G    +  Y++L+NGLC   RL+EA++L 
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 317

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            K+V  G T ++VTY  LI    +++  F A  L + +      L+   Y+ +I GL + 
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A      ++  G VP VVT + +I+GL K G I  A ++   M+ +G  P+   +
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 437

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           + +I G     + D A   L +
Sbjct: 438 SALIHGLCKARKMDCALEMLAQ 459



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 10/202 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           +   + + ++G+CK  ++ +A      +++ + +    +S LINGL     + +A  L  
Sbjct: 189 SLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQ 248

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +    G T ++ TY  ++  NW  + +    A+AL++ +  +     I  Y+ +++GLC+
Sbjct: 249 ETTTNGCTIDIHTYTAIV--NWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK 306

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +GR EEA   L ++ + G  P VVTY  LI+GL K+    EA KL  +M  +G   D+  
Sbjct: 307 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVC 366

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           +  +I+G L   +  +ASS  K
Sbjct: 367 YTALIRGLLQTGKIPQASSVYK 388



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 9/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F+   +    +   + I ING+ K   +  A          G  +D+  Y++++N L   
Sbjct: 213 FEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKN 272

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +++EAV L +K+ A G T  + TYN L+ +   K GR   A+ LL+ +  +    ++  
Sbjct: 273 KKIQEAVALMEKITANGCTPTIATYNALL-NGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 331

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDGL +  R  EA K   +++ +GL    V Y  LI GL + G I +A  +   M 
Sbjct: 332 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMT 391

Query: 173 EKGCFPDSTSFNTVIQGF 190
             GC PD  + +T+I G 
Sbjct: 392 SHGCVPDVVTLSTMIDGL 409



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKK--------GICLDVFVYSSLINGLCTFNRLKEA 59
           F+ +   + + I G C  RE + A           G+   +  ++ +++GLC   ++  A
Sbjct: 150 FRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA 209

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           ++ F+  V + +     T++ LI+   +      A +L Q    +   ++I  Y+ +++ 
Sbjct: 210 MDHFEA-VRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNW 268

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L +  + +EA   +++++  G  P + TYN L+NGLCK G + EA  LL ++ + GC PD
Sbjct: 269 LAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328

Query: 180 STSFNTVIQGF 190
             ++ ++I G 
Sbjct: 329 VVTYTSLIDGL 339



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 48/230 (20%)

Query: 14  VYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G+CK R++D A+      KK  C  D   Y+ LI+GLC    ++ A   FD+M
Sbjct: 436 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 495

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++ TYN LI    +     +A  +L  +   ++     VYS ++DGLC+ G+ 
Sbjct: 496 LEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSLVDGLCKSGKL 550

Query: 127 E----------------------------------EARKKLDQLSEKGLVPGVVTYNILI 152
           E                                  EA    + + ++G+ P    YN +I
Sbjct: 551 EGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSII 609

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           + L K G + E   +  +M  +   PD  ++N ++ G +  N  DRA  +
Sbjct: 610 SALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYY 658



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 42/148 (28%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K   I +A++       +G+  +  VYS+LI+GLC   ++  A+E+  +M     
Sbjct: 406 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 465

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           T + +TYN                                   ++IDGLC+ G  E AR 
Sbjct: 466 TPDTITYN-----------------------------------ILIDGLCKSGDVEAARA 490

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKG 159
             D++ E G  P V TYNILI+GLCK G
Sbjct: 491 FFDEMLEAGCKPDVYTYNILISGLCKAG 518



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDV----FVYSSLINGLCTFNRLK 57
           ++ E   K + + Y I I+G+CK    D+A   G+  D+    FVYSSL++GLC   +L+
Sbjct: 494 EMLEAGCKPDVYTYNILISGLCKAGNTDAAC--GVLDDMSSSRFVYSSLVDGLCKSGKLE 551

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
               LF +M   G+ A   T   LI    +      A++L   + ++    +   Y+ +I
Sbjct: 552 GGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSII 609

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             L + G+  E +    +++ +   P  VTYN L+NG+     +  A    ++M  +G  
Sbjct: 610 SALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYV 668

Query: 178 P 178
           P
Sbjct: 669 P 669


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 113/208 (54%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           L E + +G F     + + ING+CK        + +D+   KG   +   Y++LI+GLC 
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 298

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L +A+ L D+MV+       VTY  +I +   KQGR      +L  +E   Y +N  
Sbjct: 299 KGKLDKALSLLDRMVSSKCVPNEVTYGTII-NGLVKQGRALDGARVLVLMEERGYIVNEY 357

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VYS+++ GL + G+ EEA +   +  +KG     V Y+ L++GLC+     EA K+L +M
Sbjct: 358 VYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEM 417

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +KGC P++ +F+++++GF     + +A
Sbjct: 418 TDKGCAPNAFTFSSLMKGFFEVGNSHKA 445



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 9/205 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I  MCK+  +D+AI+       +    D + Y +L++GLC  +R+ EAV L 
Sbjct: 180 NVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLL 239

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M  +G      T+N LI +   K+G F+ +  L+  +       N   Y+ +I GLC 
Sbjct: 240 DEMQIEGCFPSPATFNVLI-NGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 298

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++A   LD++     VP  VTY  +INGL K+G  ++  ++LV M+E+G   +   
Sbjct: 299 KGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYV 358

Query: 183 FNTVIQGFLVKNETDRASSFLKKNM 207
           ++ ++ G   + +++ A    K++M
Sbjct: 359 YSVLVSGLFKEGKSEEAMRLFKESM 383



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 3/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           ++S++N +        A+E ++ +V      I   ++++N +I    +     +A+ L +
Sbjct: 146 FNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFR 205

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +   K   +   Y  ++DGLC+V R +EA   LD++  +G  P   T+N+LINGLCKKG
Sbjct: 206 EMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKG 265

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                 KL+  M  KGC P+  ++NT+I G  +K + D+A S L +
Sbjct: 266 DFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDR 311



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  +Y   ++G+C+ R+ D A+K       KG   + F +SSL+ G        +A+E
Sbjct: 388 KLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIE 447

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           ++  M         V Y+ LIH   +      AM +   +       ++  YS +I GLC
Sbjct: 448 VWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLC 507

Query: 122 RVGRWEEARKKLDQLS--EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
             G  EEA K  +++   E    P V+TYNIL N LCK+  I  A  LL  M ++GC PD
Sbjct: 508 DAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPD 567

Query: 180 STSFNTVIQ 188
             + N  ++
Sbjct: 568 LVTCNIFLR 576



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+ +  N +VY + ++G+ K       +R    ++ KG  L+  +YS+L++GLC   +
Sbjct: 347 MEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRK 406

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA+++  +M  +G      T++ L+   +E      A+ + + + +     N   YS+
Sbjct: 407 PDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSV 466

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +I GLC+ G+  EA     ++   G  P VV Y+ +I GLC  G + EA KL  +M   E
Sbjct: 467 LIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLE 526

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N +      ++   RA   L
Sbjct: 527 PDSQPDVITYNILFNALCKQSSISRAVDLL 556



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 40/164 (24%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+T+     N   Y + I+G+CK  ++  A       +  G   DV  YSS+I GLC   
Sbjct: 451 DMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAG 510

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++EA++L+++M+                                 LE D  + ++  Y+
Sbjct: 511 SVEEALKLYNEMLC--------------------------------LEPDS-QPDVITYN 537

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ++ + LC+      A   L+ + ++G  P +VT NI +  L +K
Sbjct: 538 ILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREK 581


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            D+  +    N H Y + + G C++  +  A K         +   V+ Y+ L+NG C  
Sbjct: 272 LDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCND 331

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA  + D+M    +  ++VTYN LI    + +      +L++ +++   + N   Y
Sbjct: 332 GKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTY 391

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++  +C+ G   EA   LD++ E GL P  VTYN LI   CK G + +A +++ +M  
Sbjct: 392 NIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS 451

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG   D+ + NT++    V+ + D A + L
Sbjct: 452 KGLKIDTWTLNTILHCLCVEKKLDEAYNLL 481



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 91/162 (56%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +  +IK G+  +   ++ LI G C  +++K+A++  +KM   G   + V+YN ++    +
Sbjct: 201 LKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLK 260

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           ++    A  LL  ++      N   Y++++ G CR+G  +EA K ++ ++   L+P V T
Sbjct: 261 RRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWT 320

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           YN+L+NG C  G I EA ++  +M++    PD  ++NT+I G
Sbjct: 321 YNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG 362



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K N   Y I +  MCK          +D   + G+  D   Y++LI   C   
Sbjct: 378 EMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAG 437

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A  + D+M ++G+  +  T N ++H    ++    A  LL +  +  Y L+   Y 
Sbjct: 438 KMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYG 497

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G  +  + + A    D++ E+ ++P  +TYN +I GLC+   + +A   L +M E 
Sbjct: 498 ILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLEN 557

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
           G  PD T++N +I GF ++   ++A  F
Sbjct: 558 GLVPDETTYNIIIHGFCLEGNVEKAFQF 585



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 17/203 (8%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I G  K  + D A+       ++ I      Y+S+I GLC   ++ +A++  ++M+
Sbjct: 496 YGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEML 555

Query: 68  AQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             G+  +  TYN +IH      N EK  +F    +    + D Y  NI     ++ GLCR
Sbjct: 556 ENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNI-----LLRGLCR 610

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+A K  + L  KG    VVTYN +I+ LCK+G    A  LL +M+ K   PD  +
Sbjct: 611 EGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYT 670

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +  +I           A  F  K
Sbjct: 671 YKVIIAALTDAGRIKEAEEFTLK 693



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + +NG C   +ID A        K  +  DV  Y++LI+G   +    E   L ++M
Sbjct: 320 TYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEM 379

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+    VTYN ++    +K     A   L  +E +    +   Y+ +I   C+ G+ 
Sbjct: 380 DKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKM 439

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A + +D+++ KGL     T N +++ LC +  + EA  LL    ++G   D  S+  +
Sbjct: 440 GKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGIL 499

Query: 187 IQGFLVKNETDRA 199
           I G+    + DRA
Sbjct: 500 ILGYFKDEKGDRA 512



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I   CK        R +D    KG+ +D +  +++++ LC   +L EA  L    
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSA 484

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G   + V+Y  LI   ++ +    A+ L   ++  +   +   Y+ VI GLC+  + 
Sbjct: 485 SKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKV 544

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A  KL+++ E GLVP   TYNI+I+G C +G + +A +   +M E    PD  + N +
Sbjct: 545 DQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNIL 604

Query: 187 IQGF 190
           ++G 
Sbjct: 605 LRGL 608



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 7/185 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++ E++   +   Y   I G+C+ R++D AI K       G+  D   Y+ +I+G C   
Sbjct: 518 EMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEG 577

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +  ++M+      ++ T N L+     +     A+ L  TL     ++++  Y+
Sbjct: 578 NVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYN 637

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  LC+ G++E A   L ++  K L P   TY ++I  L   G I EA++  ++M E 
Sbjct: 638 TIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVES 697

Query: 175 GCFPD 179
           G   D
Sbjct: 698 GIVHD 702



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 42/222 (18%)

Query: 11  NFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + + I I G C   K+++    + K    G   D   Y+++++ L     L+EA +L 
Sbjct: 212 NTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLL 271

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M ++G++    TYN L+           A  +++ + R+     +  Y+++++G C  
Sbjct: 272 LDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCND 331

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILING----------------------------- 154
           G+ +EA +  D++ +  ++P VVTYN LI+G                             
Sbjct: 332 GKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTY 391

Query: 155 ------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                 +CKKG + EA   L +M+E G  PD  ++NT+I  +
Sbjct: 392 NIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAY 433



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 77/136 (56%), Gaps = 5/136 (3%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL----NIEVYS 114
           A ++F+KM        L+T N L+ ++  +    S++ L + + +D  +L    N   ++
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLM-NSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFN 217

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G C   + ++A   ++++SE G VP  V+YN +++ L K+ ++ EA  LL+ MK K
Sbjct: 218 ILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSK 277

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++N ++ G+
Sbjct: 278 GLSPNKHTYNMLVCGY 293



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 34/189 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E  FK + +   I + G+C+   ++ A+K       KG  +DV  Y+++I+ LC   
Sbjct: 588 EMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEG 647

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI-------------------------HDNWEKQ 89
           + + A +L  +M A+ +  +  TY  +I                         HD   K 
Sbjct: 648 KFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKL 707

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           G+     +L +   + ++     YS  I+ LC   ++++A     +++++G+     TY 
Sbjct: 708 GK--GQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYL 765

Query: 150 ILINGLCKK 158
            L+ GL K+
Sbjct: 766 NLMEGLIKR 774


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 23/200 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 730 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT 789

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 790 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 849

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 850 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 909

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            +KG  PD  +F+ + Q  L
Sbjct: 910 IDKGIEPDELTFSVLNQSSL 929



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G+CK   +D A        ++G   DV+ YS LI   C    L  AV+ ++ M
Sbjct: 414 AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAM 473

Query: 67  VAQGI--TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           V+ GI     +V+Y   +   + K G  S A+A     +     L+  +Y++ +D  C+ 
Sbjct: 474 VSHGIETNCHIVSY---LLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKN 530

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA K L+++   GL P  + Y  LI+G C KG +  A ++  +M +    PD  ++
Sbjct: 531 GNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTY 590

Query: 184 NTVIQGF 190
           N +  GF
Sbjct: 591 NILASGF 597



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            G+ LD  +Y+  ++  C    + EAV+L ++M   G+T + + Y  LI     K    +
Sbjct: 511 SGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQN 570

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  + + + +   E +I  Y+++  G C+ G   E    LD+++++GL P  +TY I I 
Sbjct: 571 AQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIV 630

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G C+ G + EA+ L   ++EKG       +++++ G+L+   TD A
Sbjct: 631 GFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHA 676



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++TE   K +   Y   + G+C   + D A        ++ + ++   Y+ +++GLC   
Sbjct: 367 EMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEM 426

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA +L +    QG   ++  Y+ LI    +     +A+   + +     E N  + S
Sbjct: 427 RLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVS 486

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++    ++G   EA     +  + GL    V YNI ++  CK G + EA KLL +MK  
Sbjct: 487 YLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYG 546

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD   +  +I G+ +K E   A    ++
Sbjct: 547 GLTPDKIHYTCLISGYCLKGEMQNAQQVFEE 577



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N   YGI I G C+   +  A        +KGI     +YSS++ G      
Sbjct: 613 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGW 672

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  LF ++  QG   +  + + LI+D         A  + + +       ++  YS 
Sbjct: 673 TDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSK 732

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   C+ G  ++A      + ++GL   V+ Y IL+NG CK G + EA +L VQM   G
Sbjct: 733 LISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLG 792

Query: 176 CFPDSTSFNTVIQGFL 191
             PD  ++  ++ G L
Sbjct: 793 IKPDVIAYTVLLDGHL 808



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK   ++ A+K        G+  D   Y+ LI+G C    ++ A ++F++M
Sbjct: 519 IYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEM 578

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   I  ++VTYN L     +         LL  +     E N   Y + I G CR G  
Sbjct: 579 LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNL 638

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    + + EKG+    V Y+ ++ G    G    A  L V++  +G   D  S + +
Sbjct: 639 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKL 698

Query: 187 IQGFLVKNETDRASSFLK 204
           I           AS+  K
Sbjct: 699 INDLCRVGNVQGASNVCK 716



 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 4/170 (2%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C   F+   LI    T   ++  + LF  +   G+   + T+N L+    E  G +  M 
Sbjct: 269 CSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWNLLLKFIAET-GEYE-MV 326

Query: 97  LLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L    E   ++L  +VY+  +V   L +  + +EA +   +++E G+ P    Y+  + G
Sbjct: 327 LAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIG 386

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LC  G    A  +L ++  +    ++ ++N V+ G   +   D A   L+
Sbjct: 387 LCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLE 436


>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
 gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
          Length = 526

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 23/200 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 318 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT 377

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 378 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 437

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 438 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 497

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            +KG  PD  +F+ + Q  L
Sbjct: 498 IDKGIEPDELTFSVLNQSSL 517



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            G+ LD  +Y+  ++  C    + EAV+L ++M   G+T + + Y  LI+    K    +
Sbjct: 99  SGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQN 158

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  + + + +   E +I  Y+++  G C+ G   E    LD++++ GL P  +TY I I 
Sbjct: 159 AQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIV 218

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G C+ G + EA+ L   ++EKG       +++++ G+L+   TD A
Sbjct: 219 GFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHA 264



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
             Y+ +++GLC   RL EA +L +    QG   ++  Y+ LI    +      A+   + 
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +     E N  + S ++    ++G   E      +  + GL    V YNI ++  CK G 
Sbjct: 61  MVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGN 120

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA KLL +MK  G  PD   +  +I G+ +K E   A    ++
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEE 165



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK   ++ A+K        G+  D   Y+ LING C    ++ A ++F++M
Sbjct: 107 IYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEM 166

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   I  ++VTYN L     +         LL  +     E N   Y + I G CR G  
Sbjct: 167 LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNL 226

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    + + EKG+    V Y+ ++ G    G    A  L V++  +G   D  S + +
Sbjct: 227 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKL 286

Query: 187 IQGFLVKNETDRASSFLK 204
           I           AS+  K
Sbjct: 287 INDLCRVGNVQGASNVCK 304



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 77/254 (30%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING C   E+ +A       +K  I  D+  Y+ L +G C    + E  +L D+M 
Sbjct: 143 YTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMA 202

Query: 68  AQGITAELVTYN---------------PLIHDNWEKQG------RFSAMA---LLQTLER 103
             G+    +TY                 ++ +  E++G       +S+M    LL     
Sbjct: 203 DHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTD 262

Query: 104 DKYELNIEVY-----------SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN--- 149
             Y L + V            S +I+ LCRVG  + A      + E  +VP V++Y+   
Sbjct: 263 HAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLI 322

Query: 150 --------------------------------ILINGLCKKGMIMEADKLLVQMKEKGCF 177
                                           IL+NG CK G + EA +L VQM   G  
Sbjct: 323 SIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIK 382

Query: 178 PDSTSFNTVIQGFL 191
           PD  ++  ++ G L
Sbjct: 383 PDVIAYTVLLDGHL 396


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           L E + +G F     + + I+ +CK        + +D+   KG   +   Y++L++GLC 
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +L++AV L ++MV+       VT+  LI + +  QGR S    +L +LE   +  N  
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLI-NGFVMQGRASDGTRVLVSLEARGHRGNEY 346

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VYS +I GLC+ G++ +A +   ++  KG  P  + Y+ LI+GLC++G + EA   L +M
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K KG  P+S +++++++G+    ++ +A
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKA 434



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 42/200 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I  MC++  +D AI+       +    D + YS+L++GLC   R+ EAV L 
Sbjct: 169 NALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLL 228

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G    LV +N                                   ++I  LC+ 
Sbjct: 229 DEMQVEGTFPNLVAFN-----------------------------------VLISALCKK 253

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A K +D +  KG VP  VTYN L++GLC KG + +A  LL QM    C P+  +F
Sbjct: 254 GDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTF 313

Query: 184 NTVIQGFLVKNETDRASSFL 203
            T+I GF+++      +  L
Sbjct: 314 GTLINGFVMQGRASDGTRVL 333



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
            L  +  +GN +VY   I+G+CK  + + A++       KG   +  VYS+LI+GLC   
Sbjct: 335 SLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREG 394

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L EA     +M  +G      TY+ L+   +E      A+ + + +  +    N   YS
Sbjct: 395 KLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYS 454

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLC+ G++ EA     Q+  +G+   VV Y+ +I+G C   ++ +  KL  QM  +
Sbjct: 455 ILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQ 514

Query: 175 GCF--PDSTSFNTVIQGFLVKNETDRASSFL 203
           G    PD  ++N ++  F ++    RA   L
Sbjct: 515 GPVVQPDVITYNILLNAFCIQKSIFRAIDIL 545



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ++G+CK   ID A+        +G   ++  ++ LI+ LC    L  A +L D 
Sbjct: 206 YTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDN 265

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G     VTYN L+H    K     A++LL  +  +K   N   +  +I+G    GR
Sbjct: 266 MFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGR 325

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +  + L  L  +G       Y+ LI+GLCK+G   +A +L  +M  KGC P++  ++ 
Sbjct: 326 ASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSA 385

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G   + + D A  FL +
Sbjct: 386 LIDGLCREGKLDEARGFLSE 405



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 30/180 (16%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK  +   A+        +GI LDV  YSS+I+G C  N +++ ++LF++M+
Sbjct: 453 YSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQML 512

Query: 68  AQG--ITAELVTYNPLIHDNWEKQGRFSAMALL-----QTLERDKYELNIEVYSL----- 115
            QG  +  +++TYN L++    ++  F A+ +L     Q  + D    +I + +L     
Sbjct: 513 CQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMN 572

Query: 116 -----------VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                      ++  L +  R   A K ++ +  K L+P   T+ +++  +CK   + +A
Sbjct: 573 PPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632



 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 37/61 (60%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P  +T+N++I  +C+ G++ +A ++  ++  + C PD+ +++T++ G   +   D A S 
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 203 L 203
           L
Sbjct: 228 L 228


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   ING CK    D A +       +G   +++ Y+++I+ LC  +R
Sbjct: 407 MKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA EL +K  + G+ A+ VTY  LI +  ++     A+A    + +  +E ++ + ++
Sbjct: 467 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNI 526

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   CR  + +E+ +    +   GLVP   TY  +I+G CK+G    A K    MK  G
Sbjct: 527 LIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHG 586

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C PDS ++ ++I G   K+  D A
Sbjct: 587 CVPDSFTYGSLISGLCKKSMVDEA 610



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++SLI+GLC    +K+A E+ ++MV  G    + T+  LI    ++     A  L   L 
Sbjct: 313 FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 372

Query: 103 R-DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           R D Y+ N+  Y+ +I G C+  +   A     ++ E+GL P V TY  LING CK G  
Sbjct: 373 RSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNF 432

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A +L+  M ++G  P+  ++N VI     K+    A   L K
Sbjct: 433 DRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNK 476



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 5/181 (2%)

Query: 24  KIREID----SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E D      I++G   D    + +++ LC    +  A+  F KM+  G    L+ + 
Sbjct: 255 KIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFT 314

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI    +K     A  +L+ + R+ ++ N+  ++ +IDGLC+ G  E+A +   +L   
Sbjct: 315 SLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 374

Query: 140 GLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            +  P V TY  +I G CK+  +  A+ L  +MKE+G FP+  ++ T+I G       DR
Sbjct: 375 DIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDR 434

Query: 199 A 199
           A
Sbjct: 435 A 435



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++    +K N + +   I+G+CK    + A +  + L        +V  Y+S+I G C  
Sbjct: 335 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKE 394

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           ++L  A  LF +M  QG+   + TY  LI+ +  K G F  A  L+  ++ + +  NI  
Sbjct: 395 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC-KAGNFDRAYELMNLMDDEGFRPNIYT 453

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ VID LC+  R  EA + L++    GL    VTY ILI   CK+  I +A     +M 
Sbjct: 454 YNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMN 513

Query: 173 EKGCFPDSTSFNTVIQGF 190
           + G   D    N +I  F
Sbjct: 514 KTGFEADMRLNNILIAAF 531



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 87/173 (50%), Gaps = 1/173 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+C D   +  ++ G     +++EA      M+ +G   +  T   ++    E      
Sbjct: 234 RGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNR 293

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + +    ++ N+  ++ +IDGLC+ G  ++A + L+++   G  P V T+  LI+
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 353

Query: 154 GLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK+G   +A +L +++     + P+  ++ ++I G+  +++ +RA     +
Sbjct: 354 GLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 406



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I   CK  +I  A+       K G   D+ + + LI   C   ++KE+  LF  +
Sbjct: 488 TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 547

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V+ G+     TY  +I   + K+G F  A+     ++R     +   Y  +I GLC+   
Sbjct: 548 VSLGLVPTKETYTSMI-SGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 606

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            +EA K  + + ++GL P  VT   L    CK+
Sbjct: 607 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKR 639



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  + D A+K        G   D F Y SLI+GLC  + + EA +L++ M
Sbjct: 558 TYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 617

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +G++   VT   L ++  ++    SAM +L+ L++   +L I     ++  LC
Sbjct: 618 IDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPLDK---KLWIRTVRTLVRKLC 669



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 73/164 (44%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V   ++       RL EAV +   M  QG++   +T N ++    E      A  +   +
Sbjct: 172 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEM 231

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  +   + L++ G  R G+ +EA + L  + ++G +P   T  ++++ LC+ G++
Sbjct: 232 SVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLV 291

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A     +M + G  P+  +F ++I G   K    +A   L++
Sbjct: 292 NRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 335



 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           EV   ++     +GR  EA   +  +  +GL P  +T N ++    + G+I  A+ +  +
Sbjct: 171 EVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDE 230

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M  +G  PDS+SF  ++ G     +   A  +L
Sbjct: 231 MSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWL 263


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  YSS+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK       +R  +  I + +     VY+SLI+ LC F++
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI  + + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING CK   + +A  L  +M+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A EL+  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   EL TYN ++H   +      A+ + Q L     +L    ++++I  L +VGR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+     LS  GLVP V TY+++   L ++G++ E D L + M+E GC  +S   N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 187 IQGFLVKNETDRASSFL 203
           ++  L + +  RA ++L
Sbjct: 731 VRKLLQRGDITRAGTYL 747



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTY+ +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI I   C    +D       + IKKG  +D   ++ L+ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    ++     A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTY+ +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I    + ++ D+A   +
Sbjct: 448 NSLIHSLCIFDKWDKAKELI 467



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA +L   MV+ G+  + VTYN LI+   + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    ++E G    + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 623 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  LI  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILI-GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC +    EA +LL  M +
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218



 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
           +TE   +     Y I ++G+CK    D A++  + +C     L+   ++ +I  L    R
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             EA +LF  + A G+  ++ TY+ L+ +N  +QG
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTYS-LMAENLIEQG 703


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  +   Y   I+G+CK  ++D+A          G   +V  Y++LI+GLC   R  +A+
Sbjct: 41  YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 100

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDG 119
           +   +M+  G   +LVTYN LIH          A  +LQ L  +   + ++  Y+  I G
Sbjct: 101 QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISG 160

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G+ ++  + L+++   G+ P VVT+  +I+GLCK   I +A ++   M E+GC PD
Sbjct: 161 LCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
           S +++ ++      N  D     L+
Sbjct: 221 SLTYSIMLDNLSRANRLDTVEEVLE 245



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  + F+ +  +Y   I G+CK R+   A++        G    V  Y++LI+GLC    
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A  L  KM   G    +VTY  LI    + +    A+  ++ + R   E ++  Y+ 
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 116 VIDGLCRVGRWEEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +I GLC   R ++A   L +L  E G +P VVTYN  I+GLCK G + +  ++L +M   
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  PD  +F ++I G    N  D A    K
Sbjct: 181 GISPDVVTFCSIISGLCKANRIDDAFQVFK 210



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMA 96
           LD  +Y++LI GLC   + + A+EL   M A G  A +VTY  LI D   K G   +A A
Sbjct: 8   LDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLI-DGLCKSGDLDAAQA 66

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           LLQ +       N+  Y+ +IDGLC+  R  +A + + ++   G  P +VTYN LI+GLC
Sbjct: 67  LLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 126

Query: 157 KKGMIMEADKLLVQ-MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               + +A  +L + M E G  PD  ++NT I G     + D+    L++
Sbjct: 127 MANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEE 176



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 8/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+CK   ID A       +++G   D   YS +++ L   NRL    E+ + MV  G 
Sbjct: 193 ISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGH 252

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
            A   TY PLIH         SA    +        + +  ++  I  LCR G++  A+ 
Sbjct: 253 YALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKN 312

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGF 190
            L  + E G +P +++YN +I+GLCK G + +A KL  +M + GC  PD   FNT+I GF
Sbjct: 313 ILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGF 372

Query: 191 LVKNETDRASSFLKK 205
                  +A   LK+
Sbjct: 373 CKAGRLSQAQQLLKE 387



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 11/201 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK  ++D  +       + GI  DV  + S+I+GLC  NR+ +A ++F  M
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGM 212

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAM--ALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           + +G   + +TY+ ++ DN  +  R   +   L   ++   Y L+   Y+ +I  L R G
Sbjct: 213 LERGCVPDSLTYSIML-DNLSRANRLDTVEEVLEHMVKSGHYALS-ATYAPLIHALIRAG 270

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
             E A    +Q  E G V  V T+N  I  LC+ G    A  +L+ M E G  P+  S+N
Sbjct: 271 DIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYN 330

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            VI G       D A    +K
Sbjct: 331 FVIDGLCKSGNVDDAWKLSRK 351



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 76/142 (53%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M ++    +   YN LI    + +    A+ LL  +  + Y+ ++  Y+ +IDGLC+ G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A+  L ++++ G  P VVTY  LI+GLCK     +A + + +M   GC PD  ++N+
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           +I G  + N  D A   L++ M
Sbjct: 121 LIHGLCMANRMDDAGLVLQELM 142



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ + +  +I+SA       ++ G  ++V+ +++ I  LC   +   A  +   M
Sbjct: 258 TYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGM 317

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVG 124
           +  G    L++YN +I D   K G       L  + L+    + ++  ++ +I G C+ G
Sbjct: 318 IESGSLPNLLSYNFVI-DGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAG 376

Query: 125 RWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           R  +A++ L ++  K + VP VVTYN +I+G  K G + +A  LL +M+  G
Sbjct: 377 RLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGIC-LDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y   I+G+CK   +D A K        G C  DV  +++LI+G C   RL +A +L
Sbjct: 325 NLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQL 384

Query: 63  FDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALL 98
             +M A+ I   ++VTYN +I D   K G      LL
Sbjct: 385 LKEMKAKNICVPDVVTYNTMI-DGQSKFGSLKQAKLL 420


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREI--------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   ING C++ EI        +  + KG+  DV  Y+S+I+G C    +K A ELFD+M
Sbjct: 252 YNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEM 311

Query: 67  VAQGITAELVTYNPLIH----------------------------------DNWEKQGRF 92
           V+ GI     T+N LI                                   D + ++G  
Sbjct: 312 VSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEV 371

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           +  + L + ++      N+  Y+++I+ LC+  R  EAR  L  L    +VP    YN +
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA-SSFLK 204
           I+G CK G + EA+ ++ +M+EK C PD  +F  +I G  +K     A S+F K
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYK 485



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 8/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLK 57
           E  F  + + + I I G+C+I EID A +        G   D+  Y++LING C  N + 
Sbjct: 207 EPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEIS 266

Query: 58  EAVELF-DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +  +L  + M+ +G++ +++TY  +I    +     +A  L   +     + N   ++++
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL 326

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG  +VG    A    +++   G +P VVT+  LI+G C++G + +  KL  +MK +  
Sbjct: 327 IDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNL 386

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
            P+  ++  +I     +N    A +FL+
Sbjct: 387 SPNVYTYAVLINALCKENRIREARNFLR 414



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++     K N   + + I+G  K+  + SA+         G   DV  ++SLI+G C   
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + + ++L+++M  + ++  + TY  LI+   ++     A   L+ L+  +      +Y+
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDG C+ G+ +EA   + ++ EK   P  +T+ ILI G C KG ++EA     +M E 
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEI 489

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRAS 200
            C PD  + N++I   L     + AS
Sbjct: 490 NCVPDEITINSLISCLLKAGMPNEAS 515



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 2/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTL 101
           Y  L+  LC       A  +FD M + GI  +      L+  ++ + G+  SA   L  +
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV-SSYARMGKLDSAKNFLNEV 170

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                +++  VY+ +++ L +    +EA     +  E   VP V ++NILI GLC+ G I
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +A +    M   GCFPD  S+NT+I GF   NE  +    LK++M
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDM 276



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F  T       F+ Y + +  +CK+   DSA          GI  D  +   L++     
Sbjct: 98  FSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM 157

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A    +++   GI      YN L++   ++     A+ L +      +  ++  +
Sbjct: 158 GKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSF 217

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-MK 172
           +++I GLCR+G  ++A +    +   G  P +V+YN LING C+   I +   LL + M 
Sbjct: 218 NILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDML 277

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            KG  PD  ++ ++I G+    +   AS
Sbjct: 278 IKGVSPDVITYTSIISGYCKLGDMKAAS 305



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI +  FVY++L+N L   N + EAV LF + +      ++ ++N LI           A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNI 150
               Q +       +I  Y+ +I+G CRV    E  K  D L E    KG+ P V+TY  
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVN---EISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +I+G CK G +  A +L  +M   G  P+  +FN +I GF
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREI--------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   ING C++ EI        +  + KG+  DV  Y+S+I+G C    +K A ELFD+M
Sbjct: 252 YNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEM 311

Query: 67  VAQGITAELVTYNPLIH----------------------------------DNWEKQGRF 92
           V+ GI     T+N LI                                   D + ++G  
Sbjct: 312 VSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEV 371

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           +  + L + ++      N+  Y+++I+ LC+  R  EAR  L  L    +VP    YN +
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA-SSFLK 204
           I+G CK G + EA+ ++ +M+EK C PD  +F  +I G  +K     A S+F K
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYK 485



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 8/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLK 57
           E  F  + + + I I G+C+I EID A +        G   D+  Y++LING C  N + 
Sbjct: 207 EPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEIS 266

Query: 58  EAVELF-DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +  +L  + M+ +G++ +++TY  +I    +     +A  L   +     + N   ++++
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL 326

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG  +VG    A    +++   G +P VVT+  LI+G C++G + +  KL  +MK +  
Sbjct: 327 IDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNL 386

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLK 204
            P+  ++  +I     +N    A +FL+
Sbjct: 387 SPNVYTYAVLINALCKENRIREARNFLR 414



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++     K N   + + I+G  K+  + SA+         G   DV  ++SLI+G C   
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + + ++L+++M  + ++  + TY  LI+   ++     A   L+ L+  +      +Y+
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDG C+ G+ +EA   + ++ EK   P  +T+ ILI G C KG ++EA     +M E 
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEI 489

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRAS 200
            C PD  + N++I   L     + AS
Sbjct: 490 NCVPDEITINSLISCLLKAGMPNEAS 515



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 2/166 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTL 101
           Y  L+  LC       A  +FD M + GI  +      L+  ++ + G+  SA   L  +
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV-SSYARMGKLDSAKNFLNEV 170

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                +++  VY+ +++ L +    +EA     +  E   VP V ++NILI GLC+ G I
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +A +    M   GCFPD  S+NT+I GF   NE  +    LK++M
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDM 276



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F  T       F+ Y + +  +CK+   DSA          GI  D  +   L++     
Sbjct: 98  FSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM 157

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A    +++   GI      YN L++   ++     A+ L +      +  ++  +
Sbjct: 158 GKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSF 217

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-MK 172
           +++I GLCR+G  ++A +    +   G  P +V+YN LING C+   I +   LL + M 
Sbjct: 218 NILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDML 277

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
            KG  PD  ++ ++I G+    +   AS
Sbjct: 278 IKGVSPDVITYTSIISGYCKLGDMKAAS 305



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI +  FVY++L+N L   N + EAV LF + +      ++ ++N LI           A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNI 150
               Q +       +I  Y+ +I+G CRV    E  K  D L E    KG+ P V+TY  
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVN---EISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +I+G CK G +  A +L  +M   G  P+  +FN +I GF
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 10/196 (5%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM--VAQ 69
           I  +CK   +DSA       IK+G C D+  +S LIN LC  ++++EA E    M     
Sbjct: 56  IQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTIS 115

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEE 128
              +   +YN L++   + +    A A+  T+  ++  + ++  YS++IDG C++     
Sbjct: 116 TRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGR 175

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K   Q+ +   VP V TYN  +NGL +KG I +A  +  +M   GC PD  +++T+I 
Sbjct: 176 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIH 235

Query: 189 GFLVKNETDRASSFLK 204
           GF +  + D+A    +
Sbjct: 236 GFSLARKHDQAHELFE 251



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +NG+ +   I  A       I  G   DV  YS+LI+G     +  +A ELF
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+++G     VTYN L+H   ++     A  L + +     + +   Y+ ++ G C V
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNV 310

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A +  D++  KG  P VV YN L+ G  + G   EA +L   M  + C PD+ S 
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSH 370

Query: 184 NTVIQGFLVKNETDRA 199
           N +I G       D A
Sbjct: 371 NIMIDGLSKAKRLDDA 386



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   +N +CK +++  A         ++ +  DV  YS LI+G C  + L  A +L+ +M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +       + TYN  + +   ++GR + A  + + +       ++  YS +I G     +
Sbjct: 184 IDLNCVPNVTTYNAFL-NGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A +  + +  +G  P  VTYN L++GLCK+    EA +L  +M E+GC PD  ++ T
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 186 VIQGF 190
           ++ GF
Sbjct: 303 LLYGF 307



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++G+CK  + D A       +++G   D   Y++L+ G C   ++++AVE
Sbjct: 259 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVE 318

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FD+MV++G   ++V YN L+   +       A  L Q +   + + +   ++++IDGL 
Sbjct: 319 VFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLS 378

Query: 122 RVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           +  R ++A +  +++ +  G  P +VTYN LI GLC +  + EA K+  ++      PD 
Sbjct: 379 KAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDP 438

Query: 181 TSFNTVIQG 189
            +FN +++ 
Sbjct: 439 HAFNVLLEA 447



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G    R+ D A       I +G   +   Y+ L++GLC  ++  EA ELF KM
Sbjct: 229 TYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 288

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   + VTY  L++          A+ +   +    ++ ++  Y+ ++ G  R G+ 
Sbjct: 289 VERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 348

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNT 185
            EAR+    +  +   P  V++NI+I+GL K   + +A ++  +M ++ GC PD  ++N+
Sbjct: 349 GEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNS 408

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G   +     A    K+
Sbjct: 409 LIFGLCGEQRLSEAMKVFKE 428



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 38/128 (29%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL------V 169
           VI  LC+ GR + A   L+ + ++G  P + T+++LIN LCK   I EA + L      +
Sbjct: 55  VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114

Query: 170 QMKEKGCF--------------------------------PDSTSFNTVIQGFLVKNETD 197
             +   CF                                PD  S++ +I GF   +E  
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELG 174

Query: 198 RASSFLKK 205
           RA    K+
Sbjct: 175 RAEKLYKQ 182



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGMI 161
           K  LN   ++  + GLC+ G+ E+A +    + E           T + +I  LCK G +
Sbjct: 6   KAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRV 65

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             A  LL  M ++G  PD  + + +I      ++   A  FL+
Sbjct: 66  DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQ 108


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 42/211 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++E     +   Y + ING+CKI  +  A       I KG   DVF +++LI+G C   
Sbjct: 415 EMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKL 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A+E+ D+M   G++ +++TYN                                   
Sbjct: 475 KLDNAIEIVDRMWNHGVSPDVITYNS---------------------------------- 500

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++GLC+ G++E+       + EKG VP ++TYNIL    CK   + EA  L+ +M+ K
Sbjct: 501 -ILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNK 559

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +F T+++GF    + D A    K+
Sbjct: 560 GLTPDVVNFGTLMKGFCDNGDLDGAYQLFKR 590



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +  + ++ +   Y   I+G CK+  + +A +       KG   D   Y SLINGLC    
Sbjct: 311 MVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGD 370

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A+ +F++ + +G+   LV  N L+    ++     A+ L+  +  +    +I  Y+L
Sbjct: 371 IDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNL 430

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+GLC++G   +A   +     KG +P V T+N LI+G CKK  +  A +++ +M   G
Sbjct: 431 VINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHG 490

Query: 176 CFPDSTSFNTVIQGF 190
             PD  ++N+++ G 
Sbjct: 491 VSPDVITYNSILNGL 505



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 11  NFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IR+   C+        R +++   +G       Y ++I G    N   EA ELF
Sbjct: 145 DVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+  GI  +++ +N LIH    K     +  LL  + +     N+   ++ I G C+ 
Sbjct: 205 EEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
               EA + LD +  +GL P V+TYN LI GLCK   ++EA+  L +M  +G  PD  ++
Sbjct: 265 AMLNEAIRLLDGVG-RGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTY 323

Query: 184 NTVIQGF 190
           N++I G+
Sbjct: 324 NSIIDGY 330



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 36/200 (18%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++  +K+G+  ++F  +  I G C    L EA+ L D  V +G+T +++TYN LI   
Sbjct: 237 RLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDG-VGRGLTPDVITYNTLICGL 295

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            +      A   L+ +  + YE +   Y+ +IDG C++G  + A + L   + KG VP  
Sbjct: 296 CKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDE 355

Query: 146 VTYNILINGLC-----------------------------------KKGMIMEADKLLVQ 170
            TY  LINGLC                                   ++G+I++A KL+ +
Sbjct: 356 STYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNE 415

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M E GC PD  ++N VI G 
Sbjct: 416 MSENGCSPDIWTYNLVINGL 435



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 1/173 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GIC D+  ++ LI+ LC    ++E+  L +K++ +G++  L T N  I    ++     A
Sbjct: 211 GICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEA 270

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + LL  + R     ++  Y+ +I GLC+  +  EA   L ++  +G  P   TYN +I+G
Sbjct: 271 IRLLDGVGRG-LTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDG 329

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            CK GM+  AD++L     KG  PD +++ ++I G     + DRA +   + M
Sbjct: 330 YCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAM 382



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++D+AI+        G+  DV  Y+S++NGLC   + ++ +  F  M+ +G 
Sbjct: 467 IDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGC 526

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              ++TYN L     + +    A+ L++ ++      ++  +  ++ G C  G  + A +
Sbjct: 527 VPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQ 586

Query: 132 KLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              ++ E+      + TYNI+IN    K  +  A+KL  +M E G  PDS ++  +I GF
Sbjct: 587 LFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGF 646

Query: 191 LVKNETDRASSFL 203
                 +   SFL
Sbjct: 647 CKTGNINSGYSFL 659



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK  + +  +       +KG   ++  Y+ L    C   +++EA+ L ++M
Sbjct: 497 TYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEM 556

Query: 67  VAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +G+T ++V +  L+    DN +  G +     +   E+ K+   I  Y+++I+     
Sbjct: 557 QNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVD--EQYKFSHTIATYNIMINAFAGK 614

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
                A K  +++ E G  P   TY ++I+G CK G I      L+   EKG  P  T+F
Sbjct: 615 LNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674

Query: 184 NTVIQGFLVKNETDRA 199
             V+    +K     A
Sbjct: 675 GRVLNCLCLKRRVHEA 690



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I     CK R+++ A+        KG+  DV  + +L+ G C    L  A +LF
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLF 588

Query: 64  DKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  Q   +  + TYN +I+    K     A  L   +  + +  +   Y ++IDG C+
Sbjct: 589 KRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCK 648

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G        L    EKGL+P + T+  ++N LC K  + EA  ++  M  KG  P+   
Sbjct: 649 TGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV- 707

Query: 183 FNTVIQG 189
            NT+ + 
Sbjct: 708 -NTIFEA 713



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y++++N L  +    +A +++ +M  +GI  ++ T+   +          +A  LL  + 
Sbjct: 114 YNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMP 173

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               E +   Y  VI G        EA +  +++   G+ P ++ +N LI+ LC+KG + 
Sbjct: 174 SQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQ 233

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E+++LL ++ ++G  P+  + N  IQGF  +   + A   L
Sbjct: 234 ESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLL 274



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 85  NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           N+ ++G+   A+ + + ++    E +++ Y+ +++ L     +++A K   ++ +KG+VP
Sbjct: 85  NYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVP 144

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V T+ I +   C+      A +LL  M  +GC   + ++ TVI GF  +N    A    
Sbjct: 145 DVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELF 204

Query: 204 KK 205
           ++
Sbjct: 205 EE 206



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++EAV++F++M        + +YN +++   E +    A  +   +       ++  ++
Sbjct: 91  KIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFT 150

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           + +   CR  R   AR+ L+ +  +G     V Y  +I G  ++   +EA +L  +M   
Sbjct: 151 IRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGL 210

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +FN +I     K     +   L K
Sbjct: 211 GICPDIMAFNKLIHTLCRKGHVQESERLLNK 241



 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E  F  + + Y + I+G CK   I+S        I+KG+   +  +  ++N LC   R
Sbjct: 627 MCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRR 686

Query: 56  LKEAVELFDKMVAQGITAELV 76
           + EAV +   MV +GI  E+V
Sbjct: 687 VHEAVGIIHLMVHKGIVPEVV 707


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 95/166 (57%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+++I+G C  NR++ A ++ ++M A+G   ++VTYN +I     ++    A+ +L
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVL 195

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             L  D     +  Y+++I+     G   EA K L+++  +GL+P + TYN +I G+CK+
Sbjct: 196 DQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GM  E +KL+ +M  +GC P+  +++ +I         D A S LK
Sbjct: 256 GMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLK 301



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E   + +   Y   I+G CK+  I++A +       +G   D+  Y+ +I  LC   
Sbjct: 127 EILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L  A+++ D+++       ++TY  LI     + G   AM LL+ +       ++  Y+
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C+ G W+E  K + ++  +G  P  VTY+ILI+ LC+ G I EA  +L  M EK
Sbjct: 247 AIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK 306

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              PD+ S++ +I     +   D A
Sbjct: 307 ELTPDTYSYDPLISALCKEGRLDLA 331



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N  C   +  E++   + +V +G T +++    LI   +  +    A  +++ LE   
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E ++  Y+ VI G C+V R E A + L+++  +G +P +VTYNI+I  LC +  +  A 
Sbjct: 134 -EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+L Q+    C P   ++  +I+  +V+   + A   L++
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + +G+  D++ Y+++I G+C      E  +L  +M ++G     VTY+ LI  +  
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILI-SSLC 288

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + GR   A+++L+ +   +   +   Y  +I  LC+ GR + A   +D +   G +P +V
Sbjct: 289 RFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIV 348

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            YN ++  LCK G   +A ++  +++  GC P+
Sbjct: 349 NYNTILAALCKNGNANQALEIFNKLRGMGCPPN 381


>gi|222623336|gb|EEE57468.1| hypothetical protein OsJ_07708 [Oryza sativa Japonica Group]
          Length = 335

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 23/200 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 127 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT 186

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 187 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 246

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 247 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 306

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            +KG  PD  +F+ + Q  L
Sbjct: 307 IDKGIEPDELTFSVLNQSSL 326



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 35/199 (17%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D     G+  +   Y   I G C    L EA  LF+ +  +GI    V Y+ ++     
Sbjct: 7   LDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLL 66

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  L   + R    ++    S +I+ LCRVG  + A      + E  +VP V++
Sbjct: 67  SGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVIS 126

Query: 148 YN-----------------------------------ILINGLCKKGMIMEADKLLVQMK 172
           Y+                                   IL+NG CK G + EA +L VQM 
Sbjct: 127 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT 186

Query: 173 EKGCFPDSTSFNTVIQGFL 191
             G  PD  ++  ++ G L
Sbjct: 187 NLGIKPDVIAYTVLLDGHL 205



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           LD++++ GL P  +TY I I G C+ G + EA+ L   ++EKG       +++++ G+L+
Sbjct: 7   LDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLL 66

Query: 193 KNETDRA 199
              TD A
Sbjct: 67  SGWTDHA 73



 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLV 116
           E  +L D+M   G+    +TY   I   + + G  S   +L  +  +K   +IEV YS +
Sbjct: 2   EVFDLLDRMADHGLEPNSLTYGIAIV-GFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSM 60

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + G    G  + A     +++ +G +    + + LIN LC+ G +  A  +   M E   
Sbjct: 61  VCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNV 120

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            PD  S++ +I  +    + D+A
Sbjct: 121 VPDVISYSKLISIYCQNGDMDKA 143


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++       N   Y   ING CK  ++D A+K       KG+ LD+ VY++LI G C   
Sbjct: 596 EMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQ 655

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A + F K++  G+T   + YN +I          +A+ L + +  +K   ++++Y+
Sbjct: 656 DMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYT 715

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGL + G+   A     ++  +G+VP +  YN+LINGLC  G +  A K+L +M   
Sbjct: 716 SLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGN 775

Query: 175 GCFPDSTSFNTVIQG 189
              P    +NT+I G
Sbjct: 776 NITPTVLLYNTLIAG 790



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 1/178 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D A++ GI   V  Y+ ++  LC   ++ EA  L+DKM+ +GIT  LV+YN +I  + +
Sbjct: 420 LDGAVENGIA-SVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCK 478

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K     A  ++  +     + N   Y+++++G  + G  E A    DQ+   G+VP   T
Sbjct: 479 KGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYT 538

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +N +INGLCK G + EA   L    ++   P S ++N +I G++ +   D A S  ++
Sbjct: 539 FNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYRE 596



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E   K N   Y I + G  K           D  +  GI    + ++S+INGLC   R
Sbjct: 492 IIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGR 551

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
           + EA +  +  + Q      +TYN +I D + K+G   SA ++ + + R +   N+  Y+
Sbjct: 552 VSEARDKLNTFIKQSFIPTSMTYNCII-DGYVKEGAIDSAESVYREMCRSEISPNVITYT 610

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C+  + + A K  D +  KGL   +  Y  LI G CK   +  A K   ++ E 
Sbjct: 611 SLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEV 670

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P++  +N +I  +   N  + A +  K+
Sbjct: 671 GLTPNTIVYNIMISAYRNLNNMEAALNLHKE 701



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 2/179 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R    A  +G+ LD   YS +I  +C  + L  A +L +     G      TY  +I   
Sbjct: 243 RYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVI-GA 301

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             + G F  A+ L   +   +  +N+ V + +I G C  G    A +  D++ E G+ P 
Sbjct: 302 CVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPN 361

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           V  +++LI    K G + +A++L  +MK  G  P     N +++GF  +N  + A   L
Sbjct: 362 VAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLL 420



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 35/166 (21%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D  V++ L+      N++ EAVE F  M+  G+    V + P ++               
Sbjct: 151 DSRVFNYLLISYVRANKITEAVECFRAMLEDGV----VPWVPFVN--------------- 191

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                           +++  + R    E+A +  D+++E+ +     T  +L+    K 
Sbjct: 192 ----------------VLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKG 235

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  +EA++   Q   +G   D+ S++ VIQ     ++ D AS  ++
Sbjct: 236 GKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVE 281



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 97  LLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           L++  ER  ++L +  V++ ++    R  +  EA +    + E G+VP V   N+L+  +
Sbjct: 138 LVECAERYGFKLSDSRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAM 197

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            ++ M+ +A +L  +M E+  + D  +   +++  L
Sbjct: 198 IRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACL 233


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K N   +   +NGMCK  +++ A       +++G+  D   Y++L+ G C    
Sbjct: 251 MREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGC 310

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA+ +F +M  +GI  ++VT+  LIH   +      A+ L++ +     ++N   ++ 
Sbjct: 311 SHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTA 370

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C+ G  ++A   +  + +  + P VV YN LING C  G + EA +LL +M+ KG
Sbjct: 371 LIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 430

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  +++T+I  +    +T  A
Sbjct: 431 LKPDVVTYSTIISAYCKNCDTHSA 454



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  DS +  G+  +V+ Y+ L+  LC     KEA+ +   M   G    +VTYN L+   
Sbjct: 176 RFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAF 235

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +       A  L+  +     + N+  ++ +++G+C+ G+ E+ARK  D++  +GL P  
Sbjct: 236 FRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG 295

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           V+YN L+ G CK G   EA  +  +M +KG  PD  +F ++I         +RA + +++
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +    +  E+D A +        G+  ++  ++S++NG+C   ++++A ++F
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV +G+  + V+YN L+    +      A+++   + +     ++  ++ +I  +C+ 
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A   + Q+ E+GL    VT+  LI+G CKKG + +A   +  MK+    P    +
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCY 403

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G+ +    D A   L +
Sbjct: 404 NALINGYCMVGRMDEARELLHE 425



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    V  Y++++  L   + L  A   FD M++ G+   + TYN L+     +  R  A
Sbjct: 151 GYVPSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +++L+ +       N+  Y+ ++    R G  + A + +  + E GL P +VT+N ++NG
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +CK G + +A K+  +M  +G  PD  S+NT++ G+
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGY 305



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 22/226 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K +   Y   I+  CK  +  SA       ++KG+  D   YSSLI  LC   
Sbjct: 425 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEK 484

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A  LF  M+  G+  +  TY  LI  + ++    SA++L   + +     ++  YS
Sbjct: 485 RLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYS 544

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
           ++I+GL +  R  EA++ L +L  +  +P    Y+ L++               G C KG
Sbjct: 545 VLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKG 604

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ EADK+   M ++    D + ++ +I G        +A SF K+
Sbjct: 605 LMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQ 650



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   ++SA       +K G+  DV  YS LINGL    R  EA +L  K+
Sbjct: 507 TYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-------ERDK---------YELNI 110
             +        Y+ L+H    K    S +ALL+         E DK         + L+ 
Sbjct: 567 YHEDPIPANTKYDALMH-CCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG 625

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            VYS++I G CR G   +A     Q+ + G  P   +   LI GL + GM++EAD+++ Q
Sbjct: 626 SVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQ 685

Query: 171 MKEKGCFPDSTSFNTVI 187
           +       D+ +   +I
Sbjct: 686 LLNYCSLADAEASKALI 702



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+  D +   G+ P V TYNIL+  LC +G   EA 
Sbjct: 152 YVPSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 210

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +L  M+  GC P+  ++NT++  F    E D A
Sbjct: 211 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGA 244


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           G+   Y   I+G CK+ E+D+A K       K +  ++  ++SL++GLC   ++KEA  L
Sbjct: 244 GSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSL 303

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             +M   G   +  TY+ L            AM L +        +N    S++++GLC+
Sbjct: 304 LKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCK 363

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+A + L + +E GLV   V YN  +NG C+ G + +A   + +M+  G  P+S +
Sbjct: 364 QGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSIT 423

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           FN++I  F    E D+A  ++KK
Sbjct: 424 FNSLIDKFCDMKEMDKAEEWVKK 446



 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 106/193 (54%), Gaps = 13/193 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING---LCTFNRLK 57
            + N   +   I+  C ++E+D A        +KG+   V  Y++LI+G   LCTF+R  
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR-- 474

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
              ++ ++M   G+   +V+Y  LI+   +      A  +L+ +       N +VY+++I
Sbjct: 475 -CFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C VG+ ++A +  D++    + P +VTYN+LI+GLCKKG + EA+  L Q+   G  
Sbjct: 534 DGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS 593

Query: 178 PDSTSFNTVIQGF 190
           PD  ++N++I G+
Sbjct: 594 PDVITYNSLISGY 606



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRL 56
           TE+  + N +   I +NG+CK  +++ A        + G+  D  +Y++ +NG C    +
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
            +A+   ++M + G+    +T+N LI    + +    A   ++ +       ++E Y+ +
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           IDG  ++  ++   + L+Q+ E G+ P VV+Y  LIN LCK G I+EA+ +L  M  +G 
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            P++  +N +I G  +  +   A  F  + M
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMM 553



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 44/235 (18%)

Query: 8   FKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +  +Y   I    K++ +       DS  K+G+  +VF+Y+ LI GLC   R+++A 
Sbjct: 172 FRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAE 231

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           ++FD+M    +   +VTYN LI D + K G   +A  + + ++      NI  ++ ++ G
Sbjct: 232 KMFDEMCNINLVGSIVTYNTLI-DGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSG 290

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTY------------------------------- 148
           LC++ + +EAR  L ++   G +P   TY                               
Sbjct: 291 LCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRIN 350

Query: 149 ----NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               +IL+NGLCK+G + +A+++L +  E G   D   +NT + G+    + ++A
Sbjct: 351 NYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKA 405



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
            TE     +  +Y   +NG C+I +++ AI         G+  +   ++SLI+  C    
Sbjct: 377 FTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKE 436

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A E   KM  +G+T  + TYN LI D + K   F     +L+ +E    + N+  Y 
Sbjct: 437 MDKAEEWVKKMAEKGVTPSVETYNTLI-DGYGKLCTFDRCFQILEQMEEIGVKPNVVSYG 495

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+ LC+ G+  EA   L  +  +G++P    YN+LI+G C  G + +A +   +M   
Sbjct: 496 SLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS 555

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P   ++N +I G   K +   A  FL +
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQ 586



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 9   KGNFHVYGIRINGMCK---IREIDSAIKKGICLDVF----VYSSLINGLCTFNRLKEAVE 61
           K N   YG  IN +CK   I E +  ++  IC  V     VY+ LI+G C   ++K+A+ 
Sbjct: 488 KPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALR 547

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
            FD+M+   I+  LVTYN LI D   K+G+ + A   L  +    +  ++  Y+ +I G 
Sbjct: 548 FFDEMMRSEISPTLVTYNVLI-DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGY 606

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
              G   +     + +   G+ P V TY+ LI+G  K+G+ +  +KL  +M +    PD 
Sbjct: 607 ANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIEL-VEKLYNEMLQMNLLPDR 665

Query: 181 TSFNTVIQGFLVKNETDRASSF 202
             +N +I  +     T +A S 
Sbjct: 666 VVYNAMIHCYAEIGNTQKAYSL 687



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           + V+LF ++   G   +   Y   I    + Q     M  L ++ +     N+ +Y+++I
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLI 218

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLCR  R  +A K  D++    LV  +VTYN LI+G CK G +  A K+  +MKEK   
Sbjct: 219 GGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVA 278

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  +FN+++ G     +   A S LK+
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKE 306



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 7/187 (3%)

Query: 8   FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  + + Y I  +G+ +  +        + A +KGI ++ +  S L+NGLC   ++++A 
Sbjct: 312 FMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAE 371

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+  K    G+ A+ V YN  ++          A+  ++ +E      N   ++ +ID  
Sbjct: 372 EILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKF 431

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C +   ++A + + +++EKG+ P V TYN LI+G  K        ++L QM+E G  P+ 
Sbjct: 432 CDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNV 491

Query: 181 TSFNTVI 187
            S+ ++I
Sbjct: 492 VSYGSLI 498



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 16/187 (8%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK  ++  A          G   DV  Y+SLI+G      + + + L++ M
Sbjct: 563 TYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETM 622

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCR 122
              GI   + TY+PLI     K+G    + L++ L  +  ++N+     VY+ +I     
Sbjct: 623 KNLGIKPTVRTYHPLI-SGCSKEG----IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAE 677

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G  ++A      + ++G+ P  +TYN LI G  ++G +     L+  MK K   P + +
Sbjct: 678 IGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADT 737

Query: 183 FNTVIQG 189
           ++ +++G
Sbjct: 738 YDILVKG 744



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 78/165 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
            I L + +   L++  C    L+EAVEL++ M   G    LV+ + L      ++     
Sbjct: 101 SIPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKV 160

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +E   +  +  +Y+  I    ++   +   + LD + ++G+ P V  YN+LI G
Sbjct: 161 VDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGG 220

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LC++  I +A+K+  +M          ++NT+I G+    E D A
Sbjct: 221 LCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAA 265



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-L 97
           D  VY+++I+        ++A  L   M+ QGI  + +TYN LI  ++ ++G+ S +  L
Sbjct: 664 DRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHF-REGKLSNIKDL 722

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  ++  +     + Y +++ G C +  +  A     ++ E   +P     N L  GL +
Sbjct: 723 VNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQ 782

Query: 158 KGMIMEADKLLVQMKEKG 175
           +G + E   +  +M  KG
Sbjct: 783 EGRLQEVQVICSEMNVKG 800


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +++ + F+ N   Y + +  +CK  ++  A+        KG   D+F +++LI GLC  +
Sbjct: 440 EMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVD 499

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R ++A+ L+  M+  G+ A  VTYN LIH          A+ L+  +      L+   Y+
Sbjct: 500 RKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C++G  E+A    D++  K LVP  ++ N+LINGLC+ G +  A +LL  M  +
Sbjct: 560 GLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHR 619

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD  ++N++I G 
Sbjct: 620 GLAPDVVTYNSLINGL 635



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 15  YGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           + I ING  K   +D A        IK G   DVF +++LI+GLC    +  AV++ + M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            A G T  L+TY  L+    +K     A  +L  +    +ELNI  Y++++  LC+ G+ 
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKV 466

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A   L ++S+KG  P + T+N LI GLCK     +A  L   M   G   ++ ++NT+
Sbjct: 467 PKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTL 526

Query: 187 IQGFL 191
           I  FL
Sbjct: 527 IHAFL 531



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 12/212 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T+     N  VY   I+ + K   ++ A+K        G   DV  ++ +I GLC  N
Sbjct: 233 DMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLN 292

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ E  +L D+M+ +G T   +TY  L++          A  LL  +       N   ++
Sbjct: 293 RIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTP----NDVHFT 348

Query: 115 LVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++I+G  + GR +EA   L D++ + G  P V T+N LI+GLCKKG++  A  ++  M  
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P+  ++ T++ GF  KN+ + A   L +
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNE 440



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KG+   V+ +  ++  LC  N +  A  L   M   G     V Y  LIH   ++   
Sbjct: 200 LSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRV 259

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL+ +       +++ ++ VI GLCR+ R  E  K +D++  +G  P  +TY +L
Sbjct: 260 NEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVL 319

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +NGLC+ G + EA  LL ++      P+   F  +I G++     D A++FL   M
Sbjct: 320 MNGLCRVGKVDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKM 371



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 90/178 (50%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ ++  + +G  LD   Y+ LI   C     ++A+ LFD+MV + +    ++ N LI+ 
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                   +A+ LL+ +       ++  Y+ +I+GLC++G   EA    ++L  +G+ P 
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPD 659

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            +TYN LI   C+ GM  +A  LL++  E    P+  ++  ++  F+ +   +   SF
Sbjct: 660 AITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKEIGKENGISF 717



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D++      N   Y   ++G CK  +++ A         KG  L++  Y+ L+  LC   
Sbjct: 405 DMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A+++  +M  +G   ++ T+N LI    +   +  A+AL + +  D    N   Y+
Sbjct: 465 KVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYN 524

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I    R G  +EA K ++ +  +G     +TYN LI   CK G   +A  L  +M  K
Sbjct: 525 TLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRK 584

Query: 175 GCFPDSTSFNTVIQGF 190
              P + S N +I G 
Sbjct: 585 DLVPSNISCNLLINGL 600



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 80/163 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +++ L + N    A  +F +M+++G+   + T+  ++          +A +LL+ + 
Sbjct: 176 YNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +     N  VY  +I  L +  R  EA K L+++   G +P V T+N +I GLC+   I 
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E  KL+ +M  +G  P+  ++  ++ G     + D A   L K
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK 338



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E   + Y++V+D L        A     ++  KG++P V T+ +++  LC    +  A  
Sbjct: 170 EPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACS 229

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL  M + GC P+S  + T+I     ++  + A   L++
Sbjct: 230 LLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 105/194 (54%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI ++ +C + ++D A       I +G+  D  V+ +LI+GLC  ++  +A EL  +M
Sbjct: 415 TYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEM 474

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +GI    + +N L+ ++  K+G  + A  +   + R   + ++  Y+ +IDG C  G+
Sbjct: 475 IGRGICPNNIFFNTLL-NHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGK 533

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA K L+ +   G+ P  VTYN +ING CK G I +A  L  QM  KG  P   +++T
Sbjct: 534 VDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYST 593

Query: 186 VIQGFLVKNETDRA 199
           ++QG      T  A
Sbjct: 594 ILQGLFQARRTAAA 607



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   ING CK   I+ A         KG+   +  YS+++ GL    R   A E
Sbjct: 550 KPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKE 609

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L+  M+  GI  ++ TYN ++    +      A+ + Q L    + L    ++++ID L 
Sbjct: 610 LYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALL 669

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR +EA+     L  +GLVP VVTY +++  L ++G++ E D L + +++ GC  +S 
Sbjct: 670 KGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSR 729

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
             N ++   L K E  +A  +L K
Sbjct: 730 MLNALVGKLLQKGEVRKAGVYLSK 753



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 8/212 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI-REIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           D T   +  +   Y   ING+ +  R++D+A       + +G+  DV  Y+S+I+ L   
Sbjct: 192 DDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKA 251

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             + +A  +  +MV  G     +T+N L+H          A+ + + + RD  E ++  Y
Sbjct: 252 RAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTY 311

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++  LC+ GR  EARK  D + ++G  P   TY  L++G   +G +++   LL  M  
Sbjct: 312 NTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVR 371

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  PD   FN +I  +    + D A     K
Sbjct: 372 NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSK 403



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS +K+G   +   Y +L++G  T   L +   L D MV  GI  +   +N LI   + K
Sbjct: 332 DSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILI-GTYTK 390

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G+   AM L   + R     +   Y +V+D LC VG+ ++A  +  +L  +GL P  V 
Sbjct: 391 HGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVV 450

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  LI+GLC +    +A++L V+M  +G  P++  FNT++     +    RA
Sbjct: 451 FRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARA 502



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 106/213 (49%), Gaps = 10/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRING------MCKIREI-DSAIKKGICLDVFVYSSLINGLCT 52
           FD + ++  K N   YG  ++G      + K+  + D  ++ GI  D ++++ LI     
Sbjct: 331 FDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTK 390

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             ++ +A+ LF KM  QG+  + VTY  ++ D     G+   AMA    L  +    +  
Sbjct: 391 HGKVDDAMLLFSKMRRQGLNPDTVTYG-IVMDALCMVGKVDDAMAQFGRLISEGLTPDAV 449

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           V+  +I GLC   +W++A +   ++  +G+ P  + +N L+N LCK+GM+  A  +   M
Sbjct: 450 VFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLM 509

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                  D  ++NT+I G+ +  + D A+  L+
Sbjct: 510 VRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLE 542



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 17/210 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + +++ I I    K  ++D A+       ++G+  D   Y  +++ LC   ++ +A+
Sbjct: 374 IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAM 433

Query: 61  ELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             F +++++G+T + V +  LIH     D W+K    +    ++ + R     NI  ++ 
Sbjct: 434 AQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELA----VEMIGRGICPNNI-FFNT 488

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++ LC+ G    A+   D +    +   V+TYN LI+G C  G + EA KLL  M   G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P+  ++NT+I G+      + A S  ++
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQ 578



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 45/208 (21%)

Query: 28  IDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAV----------------------- 60
           +D A+++    G   +VF Y+ L+ GLC  NR ++A+                       
Sbjct: 146 MDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSY 205

Query: 61  ------------------ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
                              LFD+M+ QG++ ++VTYN +I    + +    A  +L  + 
Sbjct: 206 NTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMV 265

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           ++    N   ++ ++ G C  G+  +A     ++   G+ P V TYN L+  LCK G  M
Sbjct: 266 KNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM 325

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           EA K+   M ++G  P+S ++ T++ G+
Sbjct: 326 EARKIFDSMVKRGHKPNSATYGTLLHGY 353



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD + +Q    +   Y   I+ + K R +D A       +K G   +   ++SL++G C+
Sbjct: 226 FDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCS 285

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +  +A+ +F +M   G+  ++ TYN L+    +      A  +  ++ +  ++ N   
Sbjct: 286 SGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSAT 345

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y  ++ G    G   +    LD +   G+ P    +NILI    K G + +A  L  +M+
Sbjct: 346 YGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMR 405

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +G  PD+ ++  V+    +  + D A
Sbjct: 406 RQGLNPDTVTYGIVMDALCMVGKVDDA 432



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 44/224 (19%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+C   + D A       I +GIC +   +++L+N LC    +  A  +FD MV   +
Sbjct: 455 IHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDV 514

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +++TYN LI D +   G+   A  LL+ +  D  + N   Y+ +I+G C+ GR E+A 
Sbjct: 515 QRDVITYNTLI-DGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAF 573

Query: 131 KKLDQLSEKGLVPGVVTY-----------------------------------NILINGL 155
               Q++ KG+ PG+VTY                                   NI++ GL
Sbjct: 574 SLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           C+     +A ++   +       ++ +FN +I   L     D A
Sbjct: 634 CQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEA 677



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL- 97
           ++  YS +I+       L  A     +++  G TAE +T++PL+    +K+    AM + 
Sbjct: 90  NLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIA 149

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-----SEKGLVPGVVTYNILI 152
           L+ +       N+  Y++++ GLC   R ++A   L  +     +  G  P VV+YN +I
Sbjct: 150 LRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVI 209

Query: 153 NGLCKKGMIME-ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NGL ++G  ++ A  L  QM ++G  PD  ++N++I         D+A+  L
Sbjct: 210 NGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVL 261



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL---ERDKYELNIEVYS 114
            A   FD+++ +  T+ +V  N  + D   +     A++L + +    R K   N+  YS
Sbjct: 37  HAHHAFDELLHRPTTSSIVDLNRALSD-AARHSPAVAISLFRRMVMVARPKVPPNLITYS 95

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMKE 173
           +VID   RVG  + A   L ++   G     +T++ L+  LC K    EA D  L +M  
Sbjct: 96  VVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPV 155

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            GC P+  S+  +++G   +N + +A   L   M
Sbjct: 156 LGCTPNVFSYTILLKGLCDENRSQQALHLLHTMM 189


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+   +D+A        +  D + Y+ +I GLC   R+ +A+ L D M+ +
Sbjct: 111 AYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR GR ++A
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 230

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           ++ L++LS  G  P +V+Y  ++ GLC      +   L  +M +K C P+  +F+ +++ 
Sbjct: 231 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRF 290

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L++
Sbjct: 291 FCRGGMVERAIQVLQQ 306



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 13  HVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G+C        +  +D  +++G    V  Y+ L+  +C  +   EA+ + D+
Sbjct: 142 YTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDE 201

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M A+G T  +VTYN +I +   ++GR   A  +L  L    ++ +I  Y+ V+ GLC   
Sbjct: 202 MRAKGCTPNIVTYNVII-NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAAR 260

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RW++ +    ++ +K  VP  VT+++L+   C+ GM+  A ++L QM + GC P++T  N
Sbjct: 261 RWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCN 320

Query: 185 TVIQGFLVKNETDRASSFL 203
            VI     +   D A  FL
Sbjct: 321 IVINAICKQGRVDDAYDFL 339



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D+  Y++++ GLC 
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA 258

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER--------- 103
             R  +   LF +MV +      VT++ L+           A+ +LQ + +         
Sbjct: 259 ARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTL 318

Query: 104 ---------------DKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                          D Y+            +   Y+ V+ GLCR GRWE A++ L ++ 
Sbjct: 319 CNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV 378

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K   P  VT+N  I  LC+KG+I +A KL+  M E GC     ++N ++ GF V+   D
Sbjct: 379 RKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVD 438

Query: 198 RA 199
            A
Sbjct: 439 SA 440



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++++  +G   DV++ + LI  LC   R  +A  +     A G   ++  YN L+   
Sbjct: 60  RLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVA-G 118

Query: 86  WEKQGRFSAMALL---QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + + GR  A   L     +  D Y      Y+ +I GLC  GR  +A   LD + ++G  
Sbjct: 119 YCRYGRLDAARRLIASMPVPPDAY-----TYTPIIRGLCDRGRVGDALALLDDMLQRGCQ 173

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY +L+  +CK     EA  +L +M+ KGC P+  ++N +I G   +   D A   
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 233

Query: 203 LKK 205
           L +
Sbjct: 234 LNR 236



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C+    + A       ++K    +   +++ I  LC    +++A++L + M 
Sbjct: 354 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 413

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G +  +VTYN L+H  +  QGR  SA+ L   L     E N   Y+ ++ GLC   R 
Sbjct: 414 EYGCSVGIVTYNALVH-GFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERL 469

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L  + +K      VT+N+L++  C+KG + EA +L+ QM E GC P+  +FNT+
Sbjct: 470 DAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTL 529

Query: 187 IQGFLVKNETDRASSFL 203
           + G      ++ A   L
Sbjct: 530 LDGITKDCNSEEALELL 546



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   + G+C    +D+A       I+K   L+   ++ L++  C    ++EA+EL 
Sbjct: 452 NTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELV 511

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+  G T  L+T+N L+    +      A+ LL  L      L+   YS V+D L R 
Sbjct: 512 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRE 571

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R EEA + L  + + G+ P V  YN ++  LCK+    +A      M   GC P+ +++
Sbjct: 572 DRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTY 631

Query: 184 NTVIQGF 190
             +I+G 
Sbjct: 632 IILIEGL 638



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +++     N  +  I IN +CK   +D A          G   D   Y++++ GLC   R
Sbjct: 307 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A EL  +MV +      VT+N  I    +K     A+ L++ +      + I  Y+ 
Sbjct: 367 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C  GR + A +  + L  +   P  +TY  L+ GLC    +  A +LL  M +K 
Sbjct: 427 LVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLAGMIQKD 483

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           C  ++ +FN ++  F  K   + A   + + M
Sbjct: 484 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM 515



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 96/189 (50%), Gaps = 10/189 (5%)

Query: 22  MCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +C+   I+ AIK        G  + +  Y++L++G C   R+  A+ELF+ +  +  T  
Sbjct: 396 LCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNT-- 453

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            +TY  L+      +   +A  LL  + +    LN   +++++   C+ G  EEA + ++
Sbjct: 454 -ITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVN 512

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           Q+ E G  P ++T+N L++G+ K     EA +LL  +  KG   D+ ++++V+     ++
Sbjct: 513 QMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRED 572

Query: 195 ETDRASSFL 203
            T+ A   L
Sbjct: 573 RTEEAIQML 581



 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L++T        ++ + + +I  LCR GR  +A + L      G    V  YN L+ 
Sbjct: 58  AARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVA 117

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G C+ G +  A +L+  M      PD+ ++  +I+G   +     A + L
Sbjct: 118 GYCRYGRLDAARRLIASMPVP---PDAYTYTPIIRGLCDRGRVGDALALL 164



 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + ++  S +G  P V     LI  LC++G   +A ++L   +  G   D  ++NT++
Sbjct: 57  EAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLV 116

Query: 188 QGFLVKNETDRASSFLKK 205
            G+      D A   +  
Sbjct: 117 AGYCRYGRLDAARRLIAS 134


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 23/200 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 612 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT 671

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 672 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 731

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 732 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 791

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
            +KG  PD  +F+ + Q  L
Sbjct: 792 IDKGIEPDELTFSVLNQSSL 811



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + ++G+CK   +D A        ++G   DV+ YS LI   C    L  AV+ ++ M
Sbjct: 296 AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAM 355

Query: 67  VAQGI--TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           V+ GI     +V+Y   +   + K G  S A+A     +     L+  +Y++ +D  C+ 
Sbjct: 356 VSHGIETNCHIVSY---LLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKN 412

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EA K L+++   GL P  + Y  LI+G C KG +  A ++  +M +    PD  ++
Sbjct: 413 GNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTY 472

Query: 184 NTVIQGF 190
           N +  GF
Sbjct: 473 NILASGF 479



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            G+ LD  +Y+  ++  C    + EAV+L ++M   G+T + + Y  LI     K    +
Sbjct: 393 SGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQN 452

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  + + + +   E +I  Y+++  G C+ G   E    LD+++++GL P  +TY I I 
Sbjct: 453 AQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIV 512

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G C+ G + EA+ L   ++EKG       +++++ G+L+   TD A
Sbjct: 513 GFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHA 558



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++TE   K +   Y   + G+C   + D A        ++ + ++   Y+ +++GLC   
Sbjct: 249 EMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEM 308

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA +L +    QG   ++  Y+ LI    +     +A+   + +     E N  + S
Sbjct: 309 RLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVS 368

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++    ++G   EA     +  + GL    V YNI ++  CK G + EA KLL +MK  
Sbjct: 369 YLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYG 428

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD   +  +I G+ +K E   A    ++
Sbjct: 429 GLTPDKIHYTCLISGYCLKGEMQNAQQVFEE 459



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N   YGI I G C+   +  A        +KGI     +YSS++ G      
Sbjct: 495 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGW 554

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  LF ++  QG   +  + + LI+D         A  + + +       ++  YS 
Sbjct: 555 TDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSK 614

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   C+ G  ++A      + ++GL   V+ Y IL+NG CK G + EA +L VQM   G
Sbjct: 615 LISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLG 674

Query: 176 CFPDSTSFNTVIQGFL 191
             PD  ++  ++ G L
Sbjct: 675 IKPDVIAYTVLLDGHL 690



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK   ++ A+K        G+  D   Y+ LI+G C    ++ A ++F++M
Sbjct: 401 IYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEM 460

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   I  ++VTYN L     +         LL  +     E N   Y + I G CR G  
Sbjct: 461 LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNL 520

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    + + EKG+    V Y+ ++ G    G    A  L V++  +G   D  S + +
Sbjct: 521 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKL 580

Query: 187 IQGFLVKNETDRASSFLK 204
           I           AS+  K
Sbjct: 581 INDLCRVGNVQGASNVCK 598



 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 4/170 (2%)

Query: 37  CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
           C   F+   LI    T   ++  + LF  +   G+   + T+N L+    E  G +  M 
Sbjct: 151 CSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWNLLLKFIAET-GEYE-MV 208

Query: 97  LLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           L    E   ++L  +VY+  +V   L +  + +EA +   +++E G+ P    Y+  + G
Sbjct: 209 LAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIG 268

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LC  G    A  +L ++  +    ++ ++N V+ G   +   D A   L+
Sbjct: 269 LCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLE 318


>gi|40253558|dbj|BAD05505.1| PPR protein-like [Oryza sativa Japonica Group]
 gi|40253737|dbj|BAD05677.1| PPR protein-like [Oryza sativa Japonica Group]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+     K +   Y   ING CKI  +++A+         G+  ++  Y+ ++ GL    
Sbjct: 10  DMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTG 69

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A E++ +++ +GI  E+ T N ++    +      A+ + Q L     +L    ++
Sbjct: 70  QTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFN 129

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I  L R GR +E++     LS  GL P VVTY ++I  L + G++ E+D L + M++ 
Sbjct: 130 IMIGSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKN 189

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+S   N +++  L K E  RA  +L K
Sbjct: 190 GCVPNSRMLNCIVRKLLQKGEIGRAGVYLSK 220



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 43/179 (24%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++ +   +  G+  D   YS+LING C  +R++ A+ LF +MV  G++  ++TYN     
Sbjct: 5   MKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYN----- 59

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                                         +V+ GL + G+   A++   ++ ++G+   
Sbjct: 60  ------------------------------IVLQGLFQTGQTRAAKEIYVRIIKRGIQLE 89

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           + T NI++ GLCK  +  EA    +QM +  C  D    + +FN +I   L     D +
Sbjct: 90  ISTCNIVLQGLCKNNLTGEA----LQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDES 144



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM LL  +     + +   YS +I+G C++ R E A     Q+   G+ P ++TYNI++ 
Sbjct: 4   AMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQ 63

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL + G    A ++ V++ ++G   + ++ N V+QG    N T  A
Sbjct: 64  GLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEA 109


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 6/184 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           N  ++ + + G  ++ + D+ IK    KG+  D   ++ LING C     K A  L D+M
Sbjct: 360 NLFIHALFMEG--RMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEM 417

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI   LVTY  LI+   ++     A AL   ++++    +I V++ +IDG C  G  
Sbjct: 418 VGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNI 477

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L ++    ++P  +TYN L+ G C++G + EA +LL +MK +G  PD  S+NT+
Sbjct: 478 DRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTL 537

Query: 187 IQGF 190
           I G+
Sbjct: 538 ISGY 541



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I ING C+  +       +D  + KGI   +  Y+SLI  L   NR+KEA  LF K+
Sbjct: 393 THNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKI 452

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +++ +N LI  +        A  LL+ ++  K   +   Y+ ++ G CR G+ 
Sbjct: 453 QQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKV 512

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR+ LD++  +G+ P  ++YN LI+G  K+G + +A ++  +M   G  P   ++N +
Sbjct: 513 EEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNAL 572

Query: 187 IQGFLVKNETDRASSFLKK 205
           IQG     E + A   LK+
Sbjct: 573 IQGLCKNQEGEHAEELLKE 591



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 37/200 (18%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           ++ ++ +IN LC   +LK+A E    M   G+   +VTYN +IH +  + G+F  A  + 
Sbjct: 216 LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR-GKFQRARVIF 274

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           QT++    E +   Y+  I GLC+ GR EEA   + ++ E GLVP  VTYN LI+G C K
Sbjct: 275 QTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNK 334

Query: 159 G------------------------------MIME-----ADKLLVQMKEKGCFPDSTSF 183
           G                              + ME     AD ++ +M+EKG  PD+ + 
Sbjct: 335 GDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTH 394

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +I G+    +  RA   L
Sbjct: 395 NILINGYCRCGDAKRAFGLL 414



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 9   KGNFHVYGIRINGMC------KIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G C      + R I   +K KG+  D + Y+S I+GLC   RL+EA  
Sbjct: 248 KPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASG 307

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  KM+  G+    VTYN LI     K     A A    +       ++  Y+L I  L 
Sbjct: 308 LICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF 367

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC------------------------- 156
             GR  +A   + ++ EKG++P  VT+NILING C                         
Sbjct: 368 MEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLV 427

Query: 157 ----------KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                     K+  + EAD L  +++++G  PD   FN +I G       DRA   LK+
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKE 486



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++ + +   C++++ + A++       KG   ++   + +++     NR + A  L+ +M
Sbjct: 148 IFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM 207

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I + L T+N +I +   K+G+   A   +  +E    + N+  Y+ +I G C  G+
Sbjct: 208 FRMNIRSSLYTFNIMI-NVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++ AR     + +KGL P   TYN  I+GLCK+G + EA  L+ +M E G  P++ ++N 
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNA 326

Query: 186 VIQGFLVKNETDRASSF 202
           +I G+  K + D+A ++
Sbjct: 327 LIDGYCNKGDLDKAYAY 343



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
             ++  L+   C   +  EA+E F  +  +G    + T N ++    +      A  L  
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + R     ++  ++++I+ LC+ G+ ++A++ +  +   G+ P VVTYN +I+G C +G
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRG 265

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               A  +   MK+KG  PD  ++N+ I G   +   + AS  + K
Sbjct: 266 KFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICK 311



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   I+G C    ID A +         +  D   Y++L+ G C   +++EA +L D+M
Sbjct: 463 VFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEM 522

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +GI  + ++YN LI   + K+G    A  +   +    ++  I  Y+ +I GLC+   
Sbjct: 523 KRRGIKPDHISYNTLI-SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQE 581

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            E A + L ++  KG+ P   TY  +I  +
Sbjct: 582 GEHAEELLKEMVSKGITPDDSTYLSIIEAM 611


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D  I  G+  +++ Y+ +I+ LC    +  A E+F  +  +GI+  +VTYN LI   
Sbjct: 451 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 510

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A  LL+ L   ++  +I  ++ +IDGLC+  + E A     ++ E  + P V
Sbjct: 511 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 570

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +TYNILI   C  G +  +  LL QMK  G  PD+ SFN +IQG+  KN   +A
Sbjct: 571 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKA 624



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL  +    N   Y   I G C+   +D A       ++     D+F ++SLI+GLC  +
Sbjct: 490 DLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAH 549

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A   F +MV   +   ++TYN LI           +  LL+ ++    + +   ++
Sbjct: 550 KHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFN 609

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G     R+++A K  D +   G+ P   TY  LI  LCK G   +A ++ + MKE 
Sbjct: 610 ALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKEN 669

Query: 175 GCFPDS 180
           GC PDS
Sbjct: 670 GCTPDS 675



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 7/197 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N + Y + I+ +CK + +D A +       +GI  ++  Y++LI G C    + +A EL
Sbjct: 463 SNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQEL 522

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            + ++      ++ T+N LI    +     +A      +       N+  Y+++I   C 
Sbjct: 523 LEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCA 582

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G    +   L Q+   G+ P   ++N LI G   K    +A+KL   M   G  PD+ +
Sbjct: 583 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYT 642

Query: 183 FNTVIQGFLVKNETDRA 199
           +  +I+        D+A
Sbjct: 643 YGALIKSLCKSGRHDKA 659



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +Y+ V+D L +    + A  K  Q+S    VP   TYNILI+G+C+ G++ EA +L+ Q
Sbjct: 230 RLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQ 289

Query: 171 MKEKGCFPDSTSFNTVIQGFL 191
           M+  G FP+  ++  +I GF 
Sbjct: 290 MEGLGYFPNVFTYTILIDGFF 310



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E RF+ +   +   I+G+C+  + ++A       ++  +  +V  Y+ LI   C    
Sbjct: 526 LLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGD 585

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +  +  L  +M   GI  +  ++N LI   +  + RF  A  L  ++ R   + +   Y 
Sbjct: 586 VSRSTHLLRQMKLHGIQPDTFSFNALIQ-GYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 644

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +I  LC+ GR ++AR+    + E G  P   T ++  + L
Sbjct: 645 ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTL 685



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           VE+F ++   G+      YN ++    +      A    Q +       +   Y+++I G
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +CR+G  +EA + + Q+   G  P V TY ILI+G        E  K+L  MKE+   P+
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             +  +++ G       D+A   L
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELL 357



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y+++++ L   N L  A   F +M +     +  TYN LIH          A+ L++ +
Sbjct: 231 LYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQM 290

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E   Y  N+  Y+++IDG     R  E  K L  + E+ +VP   T   L++G+ +    
Sbjct: 291 EGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAP 350

Query: 162 MEADKLLVQMKEK 174
            +A +LL++  E+
Sbjct: 351 DKAFELLLEFVER 363



 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 33/224 (14%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+C++  +D A++        G   +VF Y+ LI+G     R  E  ++   M
Sbjct: 266 TYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTM 325

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             + +     T   L+H  +       A  LL      K  +   V   ++  L      
Sbjct: 326 KERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMA 385

Query: 127 EEA-----------------RKKL---------DQLSEKGLVPGVVTYNILINGLCKKGM 160
            EA                  KKL         D   + G+ PG  TY  LI  L K G 
Sbjct: 386 SEAVMFXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGK 445

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +   ++ + ++   G   +  S+N VI         DRAS   +
Sbjct: 446 MEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFR 489



 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 50/124 (40%)

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           +H     +    ++ LLQ ++    ++  E+  ++     R+G      +   Q+   GL
Sbjct: 166 LHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGL 225

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P    YN +++ L K   +  A     QM    C PD  ++N +I G       D A  
Sbjct: 226 NPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALR 285

Query: 202 FLKK 205
            +K+
Sbjct: 286 LMKQ 289


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  +   G+ ++Y   IN  C+   +       D  +  GI  +   Y  LING C   
Sbjct: 227 EMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIG 286

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +++ A  L   M  +G+    + +N +I D + +QG   +A+ +   +E+   EL++  Y
Sbjct: 287 QMEAAEMLLADMQGRGVGHNQIIFNTMI-DGYCRQGMVDNALKVKAAMEKMGIELDVYTY 345

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +  GLCRV R  EA+  L  + EKG+ P  VTY  LI+  CK+G ++EA +L  +M  
Sbjct: 346 NTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAG 405

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  P   ++N ++ G++ K     A  F K+
Sbjct: 406 KGAMPSVVTYNVMMDGYIKKGSIREAERFRKE 437



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L + + +G  H   ++   I+G C+   +D+A+K        GI LDV+ Y++L  GLC 
Sbjct: 295 LADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCR 354

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            NR+ EA  L   M+ +G+    VTY  LI  + ++     A  L + +       ++  
Sbjct: 355 VNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVT 414

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++DG  + G   EA +   ++ +KGLVP V TY  L++G C  G +  A KL  +MK
Sbjct: 415 YNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMK 474

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +G  P+  ++  +I G   +  ++ A
Sbjct: 475 HRGTEPNVVAYTALISGLAKEGRSEEA 501



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 67/147 (45%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S +++G C   R+ +A  L D+M   G+    + YN L+     ++       LL+ +E 
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              E  +  Y++++D L   G   +    +D++  K +   V  Y  +IN  C+ G +  
Sbjct: 196 GGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRR 255

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           A ++  +    G  P+  ++  +I GF
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGF 282


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 44/236 (18%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDK 65
            + I +NG+C+ +E+           + G+C+ +V  Y+S+I+G C   R+++A+ +++ 
Sbjct: 271 THNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYND 330

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MVA G +  +VTYN LI+   +     SA+A+ Q +   +   ++  +S +IDG CR G+
Sbjct: 331 MVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQ 390

Query: 126 WEEARKKLDQLSEKGLVPGVVT------------------------------------YN 149
            ++A K   ++++  + P   T                                    YN
Sbjct: 391 LDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYN 450

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +I+ LCK G + EA+ +L++M+EKGC PD  ++  +I G  +K     A +F  K
Sbjct: 451 PVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHK 506



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 1/162 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV+ ++ +I G+C    +++A+EL ++M   G + + VT+N L++     +       +L
Sbjct: 233 DVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVL 292

Query: 99  QTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + L+RD   + N+  Y+ VI G C+ GR E+A    + +   G  P VVTYN+LING  K
Sbjct: 293 RRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGK 352

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G +  A  +  QM  + C PD  +F+++I G+    + D A
Sbjct: 353 AGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDA 394



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 8/198 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGI---CL-DVFVYSSLINGLCTFN 54
           D+       N   Y + ING  K   + SA+   ++ I   CL DV  +SSLI+G C   
Sbjct: 330 DMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCG 389

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVY 113
           +L +A++++ +M    I     T+  +IH   ++     A+  L+ +  R        +Y
Sbjct: 390 QLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIY 449

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VID LC+ G+ +EA   L ++ EKG  P   TY ILI G C KG I EA     +M E
Sbjct: 450 NPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVE 509

Query: 174 KGCFPDSTSFNTVIQGFL 191
            GC PDS   N+ I   L
Sbjct: 510 TGCSPDSIVVNSFISCLL 527



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I G+CK+ ++  A++        G   D   ++ L+NGLC    + +  E+  ++ 
Sbjct: 237 FNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQ 296

Query: 68  AQGIT-AELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             G+    +VTY  +I   + K GR   AMA+   +       N+  Y+++I+G  + G 
Sbjct: 297 RDGVCMPNVVTYTSVI-SGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGN 355

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A     Q+  +  +P VVT++ LI+G C+ G + +A K+  +M +    P++ +F  
Sbjct: 356 MGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCI 415

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I  F  +N +  A  FLKK
Sbjct: 416 IIHTFCKQNRSGEALHFLKK 435



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 40/187 (21%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQ--------------------------------- 69
           Y  +I+ +C   R  +A++LFD+M  Q                                 
Sbjct: 130 YRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKA 189

Query: 70  ---GITAELVTYNPLIHDNWEKQGRFS-AMALLQT-LERDKYELNIEVYSLVIDGLCRVG 124
              G + E   YN L+ D +   GR   A+AL +  ++   Y  ++  +++VI G+C+VG
Sbjct: 190 SQFGCSIEAYAYNKLM-DLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVG 248

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSF 183
             ++A + ++++ E G  P  VT+NIL+NGLC+   + +  ++L +++  G C P+  ++
Sbjct: 249 DVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTY 308

Query: 184 NTVIQGF 190
            +VI G+
Sbjct: 309 TSVISGY 315



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 20/164 (12%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-VAQG 70
           I+G C+  ++D A+K         I  +   +  +I+  C  NR  EA+    KM +   
Sbjct: 382 IDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTD 441

Query: 71  ITAELVTYNPLIHDNWEKQGRF--SAMALLQTLER----DKYELNIEVYSLVIDGLCRVG 124
           I  +   YNP+I D   K G+   + M L++  E+    DKY      Y+++I G C  G
Sbjct: 442 IAPQAFIYNPVI-DVLCKGGKVDEANMILIEMEEKGCRPDKY-----TYTILIIGHCMKG 495

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           R  EA     ++ E G  P  +  N  I+ L K GM  E D ++
Sbjct: 496 RIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIM 539


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 17/203 (8%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   I  A++        G   +   Y+SL+ GLC    L ++++L DK++
Sbjct: 23  YTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGNLNQSLQLLDKLM 82

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   AM LL  +    ++ N+  Y++++ GLC+ GR E
Sbjct: 83  WKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTE 142

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA +    L  KG  P VV+YNI++  LC +G   EA++LL +M  +   P   ++N +I
Sbjct: 143 EAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILI 202

Query: 188 ----------QGFLVKNETDRAS 200
                       F V +E  RAS
Sbjct: 203 GSLAFHGRIEHAFEVLDEMVRAS 225



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 98/193 (50%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  +  N   Y   + G+C        ++ +D  + KG+  + F YS L+        
Sbjct: 46  MEENGYPTNTVTYNSLVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERG 105

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA++L D+++A+G    LV+YN L+     K+GR   A+   + L    +  N+  Y+
Sbjct: 106 VNEAMKLLDEIIAKGWQPNLVSYNVLL-TGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYN 164

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++  LC  GRWEEA + L ++  +   P +VTYNILI  L   G I  A ++L +M   
Sbjct: 165 IILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRA 224

Query: 175 GCFPDSTSFNTVI 187
              P +T++N +I
Sbjct: 225 SFKPSATTYNPII 237



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I KG   ++  Y+ L+ GLC   R +EA+  F  + ++G    +V+YN +I  +  
Sbjct: 113 LDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYN-IILRSLC 171

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +GR+  A  LL  ++ ++   ++  Y+++I  L   GR E A + LD++      P   
Sbjct: 172 HEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSAT 231

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           TYN +I  LCK+G +    K L QM    C P+  +FN +
Sbjct: 232 TYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAI 271



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 80/149 (53%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +K+A  + + M+  GI  +  +Y  L+++  ++     AM L++ +E + Y  N   Y+ 
Sbjct: 1   MKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNS 60

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC  G   ++ + LD+L  KGLVP   TY+ L+    K+  + EA KLL ++  KG
Sbjct: 61  LVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKG 120

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             P+  S+N ++ G   +  T+ A  F +
Sbjct: 121 WQPNLVSYNVLLTGLCKEGRTEEAIRFFR 149



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 47/247 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLC 51
           DL  + F  N   Y I +  +C           + E+DS  +      +  Y+ LI  L 
Sbjct: 150 DLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSP---SLVTYNILIGSLA 206

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLI---------------------HDNWEKQG 90
              R++ A E+ D+MV         TYNP+I                     H     +G
Sbjct: 207 FHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEG 266

Query: 91  RFSAMALL-------------QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
            F+A+A+L             Q L   +     + Y  VI  LCR G    A + L +++
Sbjct: 267 TFNAIAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMT 326

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           + G VP   TY+ LI GLC +GM+ EA ++   ++E    P   +FN +I GF     TD
Sbjct: 327 KFGFVPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGRTD 386

Query: 198 RASSFLK 204
            +   L+
Sbjct: 387 LSLDILE 393



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 12/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYS---------SLINGLCT 52
           ++    FK +   Y   I  +CK  ++D  IK   CLD  ++          + I  LC 
Sbjct: 220 EMVRASFKPSATTYNPIIAHLCKEGKLDLVIK---CLDQMIHHRCNPNEGTFNAIAVLCK 276

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  +   +  +  ++    Y  +I     K   + A  LL  + +  +  +   
Sbjct: 277 QGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYT 336

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC  G  +EA +    L E    P +  +N LI G CK G    +  +L  M 
Sbjct: 337 YSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGRTDLSLDILEMMV 396

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EKG  P+ T++  +++G   + E + A+  LK+
Sbjct: 397 EKGYTPNETTYTIIVEGIAHEEEKELAAEVLKE 429



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 49/81 (60%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A + ++ + E G++P   +Y  L+N LCK+G I  A +L+ +M+E G   ++ ++N++
Sbjct: 2   KKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSL 61

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           ++G  +    +++   L K M
Sbjct: 62  VRGLCMHGNLNQSLQLLDKLM 82


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D  I  G+  +++ Y+ +I+ LC    +  A E+F  +  +GI+  +VTYN LI   
Sbjct: 460 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 519

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A  LL+ L   ++  +I  ++ +IDGLC+  + E A     ++ E  + P V
Sbjct: 520 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 579

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +TYNILI   C  G +  +  LL QMK  G  PD+ SFN +IQG+  KN   +A
Sbjct: 580 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKA 633



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL  +    N   Y   I G C+   +D A       ++     D+F ++SLI+GLC  +
Sbjct: 499 DLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAH 558

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A   F +MV   +   ++TYN LI           +  LL+ ++    + +   ++
Sbjct: 559 KHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFN 618

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G     R+++A K  D +   G+ P   TY  LI  LCK G   +A ++ + MKE 
Sbjct: 619 ALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKEN 678

Query: 175 GCFPDS 180
           GC PDS
Sbjct: 679 GCTPDS 684



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 7/197 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N + Y + I+ +CK + +D A +       +GI  ++  Y++LI G C    + +A EL
Sbjct: 472 SNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQEL 531

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            + ++      ++ T+N LI    +     +A      +       N+  Y+++I   C 
Sbjct: 532 LEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCA 591

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G    +   L Q+   G+ P   ++N LI G   K    +A+KL   M   G  PD+ +
Sbjct: 592 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYT 651

Query: 183 FNTVIQGFLVKNETDRA 199
           +  +I+        D+A
Sbjct: 652 YGALIKSLCKSGRHDKA 668



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +Y+ V+D L +    + A  K  Q+S    VP   TYNILI+G+C+ G++ EA +L+ Q
Sbjct: 230 RLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQ 289

Query: 171 MKEKGCFPDSTSFNTVIQGFL 191
           M+  G FP+  ++  +I GF 
Sbjct: 290 MEGLGYFPNVFTYTILIDGFF 310



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           VE+F ++   G+      YN ++    +      A    Q +       +   Y+++I G
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +CR+G  +EA + + Q+   G  P V TY ILI+G        EA K+L  MKE+   P+
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPN 333

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             +  +++ G       D+A   L
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELL 357



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E RF+ +   +   I+G+C+  + ++A       ++  +  +V  Y+ LI   C    
Sbjct: 535 LLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGD 594

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +  +  L  +M   GI  +  ++N LI   +  + RF  A  L  ++ R   + +   Y 
Sbjct: 595 VSRSTHLLRQMKLHGIQPDTFSFNALIQ-GYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 653

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +I  LC+ GR ++AR+    + E G  P   T ++  + L
Sbjct: 654 ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTL 694



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y+++++ L   N L  A   F +M +     +  TYN LIH          A+ L++ +
Sbjct: 231 LYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQM 290

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E   Y  N+  Y+++IDG     R  EA K L  + E+ +VP   T   L++G+ +    
Sbjct: 291 EGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAP 350

Query: 162 MEADKLLVQMKEK 174
            +A +LL++  E+
Sbjct: 351 DKAFELLLEFVER 363



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D F Y+ LI+G+C    + EA+ L  +M   G    + TY  LI   +  +    A  +L
Sbjct: 263 DRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVL 322

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCK 157
           QT++      N      ++ G+ R    ++A + L +  E K  +  +V  NIL   L  
Sbjct: 323 QTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILY-CLSN 381

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
             M  EA   L++  ++G  P S++FN  +   L K
Sbjct: 382 NSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLKK 417



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+C++  +D A++        G   +VF Y+ LI+G     R  EA ++   M
Sbjct: 266 TYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTM 325

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             + +     T   L+H  +       A  LL      K  +   V   ++  L      
Sbjct: 326 KERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMA 385

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA   L +  ++G VP   T+NI +  + KK  +     +     + G  P  +++ T+
Sbjct: 386 SEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTL 445

Query: 187 IQGF 190
           I+  
Sbjct: 446 IEAL 449



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 50/124 (40%)

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           +H     +    ++ LLQ ++    ++  E+  ++     R+G      +   Q+   GL
Sbjct: 166 LHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGL 225

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P    YN +++ L K   +  A     QM    C PD  ++N +I G       D A  
Sbjct: 226 NPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALR 285

Query: 202 FLKK 205
            +K+
Sbjct: 286 LMKQ 289


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+       N  +Y I I G C +     A+       +KG+  D+  YS++I+ L    
Sbjct: 581 DMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNG 640

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + KEA+ +F K +  G+  ++  YN LI    ++     A  L   +  +    NI VY+
Sbjct: 641 KTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYN 700

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC++G   +AR+  D++ EK LVP VVTY+ +I+G CK G + EA KL  +M  K
Sbjct: 701 TLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISK 760

Query: 175 GCFPDSTSFNTVIQG 189
           G  PD   +  +I G
Sbjct: 761 GISPDGYIYCILIDG 775



 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 8/187 (4%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   ING+CK+ E+       D   +K +  DV  YS++I+G C    L EA +LF
Sbjct: 695 NIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLF 754

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+++GI+ +   Y  LI D   K+G       L    + K   ++  ++ +ID  C+ 
Sbjct: 755 DEMISKGISPDGYIYCILI-DGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKH 813

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EAR+  D + +K L P +VTY ILI+   K  M+ EA++L + M+ +   P++ ++
Sbjct: 814 GKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 873

Query: 184 NTVIQGF 190
            +++  +
Sbjct: 874 TSLLLSY 880



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID------SAIKKGICLDVFVYSSLINGLCTFNRL 56
           + E +   + + Y   I   CK+ ++       S ++K    ++F Y++ I GLC    +
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAV 292

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSL 115
            EA+E+   M+ +G+  +  TY  L+ D + KQ R   A  + +++       N   Y+ 
Sbjct: 293 DEALEVKKLMMEKGLGPDGHTYTLLV-DGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTA 351

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  + G  EEA +  D++  +GL   VVTYN +I G+ K G + +A  L  +M   G
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD+ ++N +I G+L  ++  +A   L +
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAE 441



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 8/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G  K  ++  A +       + +    F YS LI+GLC  + L++A E+ D+M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+   +  Y  LI    ++     A+ LL+ +  +    ++  Y+ +I GLCR  + 
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKV 537

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA+  L  + EKG+ P   TY   IN   K G I  A++    M   G  P++  +  +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597

Query: 187 IQGFL-VKNETDRASSF 202
           I+G   V N  +  S+F
Sbjct: 598 IKGHCDVGNTVEALSTF 614



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  ++   +   Y + I+G+C   ++       D  I+ G+  +VF+Y +LI      +
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R + A+EL   M+A G+  +L  YN LI      +    A  LL  +     + N   Y 
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYG 560

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             I+   + G  + A +    +   G+VP  V Y ILI G C  G  +EA      M EK
Sbjct: 561 AFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASS-FLK 204
           G  PD  +++ +I       +T  A   FLK
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K       +R  D  I +G+ L+V  Y+++I G+     + +A+ LF
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+  G+  +  TYN LI    +      A  LL  ++  K   +   YS++I GLC  
Sbjct: 405 NEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHS 464

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              ++A + LDQ+   G+ P V  Y  LI    ++     A +LL  M   G  PD   +
Sbjct: 465 SDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +I G     + + A   L
Sbjct: 525 NCLIIGLCRAKKVEEAKMLL 544



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G+C+ ++++ A        +KGI  +   Y + IN       ++ A   F  M+
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + GI    V Y  LI  + +      A++  + +       +I  YS +I  L + G+ +
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA     +  + G+VP V  YN LI+G CK+G I +A +L  +M   G  P+   +NT+I
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 188 QGFLVKNETDRA 199
            G     E  +A
Sbjct: 704 NGLCKLGEVTKA 715



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTF 53
           F   +Q+  G+   +   I+  CK       RE+ D  + K +  ++  Y+ LI+     
Sbjct: 789 FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKA 848

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++EA +LF  M  + I    +TY  L+    +   RF  ++L + +E      +   Y
Sbjct: 849 EMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAY 908

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV----TYNILINGLCKKGMIMEADKLLV 169
            ++    C+ G+  EA K L+    K LV G+      ++ LI  LCK+  I    +LL 
Sbjct: 909 GVMASAYCKEGKSLEALKLLN----KSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLS 964

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +M ++     S + NT++ GF      D AS  L
Sbjct: 965 EMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVL 998



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S ++  I  DV+ Y+++I   C    + +   +  +M  +     L TYN  I    +  
Sbjct: 232 SMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTG 290

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A+ + + +       +   Y+L++DG C+  R +EA+   + +   GL P   TY 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LI+G  K+G I EA ++  +M  +G   +  ++N +I G     E  +A S   +
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 13/197 (6%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
            D+ +++   N   Y I I+   K   ++ A +       + I  +   Y+SL   L ++N
Sbjct: 825  DMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL---LLSYN 881

Query: 55   RLK---EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
            ++    + + LF  M A+GI  + + Y  +     ++     A+ LL     +  +L  +
Sbjct: 882  QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDD 941

Query: 112  VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            V+  +I  LC+  +     + L ++ ++ L     T N L+ G  K G   EA K+L  M
Sbjct: 942  VFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001

Query: 172  KEKGCFPDSTSFNTVIQ 188
            +  G  P S S    I 
Sbjct: 1002 QRLGWVPTSLSLTDSIS 1018


>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
          Length = 523

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 4/181 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  + +G    V  +S+++  LC   R+  A+E+FD M A G    + TYN LI     
Sbjct: 186 LDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLI-GGLC 244

Query: 88  KQGRFS-AMALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             GR   A+ LL  L E  K   +I  +++V+DG C+VGR +EA          GL P +
Sbjct: 245 YVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTI 304

Query: 146 VTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            TYN L+NG CK+G  ++A  LL++M     C PD  SF+ V+Q  L   ET  A    K
Sbjct: 305 FTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYK 364

Query: 205 K 205
           +
Sbjct: 365 R 365



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           L V  Y+ +++ L        AV LF  +   G+T +  +Y   +     K     A   
Sbjct: 126 LTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEA 185

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +    +   +  +S V+  LC+ GR   A +  D +   G  P + TYN LI GLC 
Sbjct: 186 LDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCY 245

Query: 158 KGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G + EA  LL ++KE     PD  +F  V+ GF     TD A+   
Sbjct: 246 VGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIF 292



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA+AL + L  +    + + Y+  +  LCR G  +EA++ LD++  +G  P V T++ ++
Sbjct: 146 SAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVV 205

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LCK+G +  A ++   M+  GC P   ++N++I G       + A   L K
Sbjct: 206 GCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNK 258



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
               Y   I G+C +  ++ A+              D++ ++ +++G C   R  EA  +
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPI 291

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLC 121
           F   V  G++  + TYN L++ + ++     A +LL  +  +       + +S+V+  L 
Sbjct: 292 FHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALL 351

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           R G    A +   ++   G        + L  GLC++
Sbjct: 352 RAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQ 388



 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 61/226 (26%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLING-------------- 49
           + + + I ++G CK+   D        A++ G+   +F Y++L+NG              
Sbjct: 268 DIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLL 327

Query: 50  -------LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF---------- 92
                   C  +R+  ++ L   + A   +A    Y  +    +E  GR           
Sbjct: 328 MEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCR 387

Query: 93  -----------------------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
                                  +A++LL  + R  Y L    Y+ V+  LC  GR  +A
Sbjct: 388 QCAANVAALADAREALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCERGRARDA 447

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            + L  +  +  VPG   ++ L+  L ++G   +A  +     ++G
Sbjct: 448 LRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRG 493


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 12/196 (6%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           + R +G   +   Y   +NG+C+ R + +A          G+  D   Y++LI+G C   
Sbjct: 315 DMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDG 374

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
           +L  A+++  KM  + ++ + VTY  LI     K GR   A  +L+ +     E +   Y
Sbjct: 375 KLDMAMDIKQKMAEKEVSLDEVTYTALIS-GLSKAGRPVDAERVLREMMEAALEPDNTTY 433

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++VID  CR G  +   K L ++  KG  PGVVTYN+++NGLCK G +  AD LL  M  
Sbjct: 434 TMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLN 493

Query: 174 KGCFPDSTSFNTVIQG 189
            G  PD  ++N ++ G
Sbjct: 494 IGVSPDDITYNILLDG 509



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++++   K + + YG  I G C+   +++A+K        G+  +  V+++LI+  C   
Sbjct: 245 EMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEG 304

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +   ++L+  M  +G+  +LV YN L++     +   +A ++++ ++    + +   Y+
Sbjct: 305 NVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYT 364

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G+ + A     +++EK +    VTY  LI+GL K G  ++A+++L +M E 
Sbjct: 365 TLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEA 424

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD+T++  VI  F  K +       LK+
Sbjct: 425 ALEPDNTTYTMVIDAFCRKGDVKTGFKLLKE 455



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  V+   I+  CK   +++ +        +G+  D+  Y++L+NGLC    LK A  + 
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++M   G+  + VTY  LI D   K G+   AM + Q +   +  L+   Y+ +I GL +
Sbjct: 349 EEMKNAGLKPDKVTYTTLI-DGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSK 407

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR  +A + L ++ E  L P   TY ++I+  C+KG +    KLL +M+ KG  P   +
Sbjct: 408 AGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVT 467

Query: 183 FNTVIQGF 190
           +N ++ G 
Sbjct: 468 YNVIMNGL 475



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 9/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           FD   +  +     +   I+GMC+ R++D+           G+  DV+ Y +LI G C  
Sbjct: 209 FDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRT 268

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEV 112
            R++ AV++F++M   G+    V +  LI D   K+G  +A M L Q +       ++  
Sbjct: 269 GRMENAVKMFNEMRDTGVNPNAVVFTTLI-DAHCKEGNVNAGMDLYQDMRVRGVMPDLVA 327

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +++GLCR    + A   ++++   GL P  VTY  LI+G CK G +  A  +  +M 
Sbjct: 328 YNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMA 387

Query: 173 EKGCFPDSTSFNTVIQGF 190
           EK    D  ++  +I G 
Sbjct: 388 EKEVSLDEVTYTALISGL 405



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 2/174 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           +R+  +   R++   +++ +   V  +++LI+G+C    L     L+ +M   G+  ++ 
Sbjct: 197 VRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVY 256

Query: 77  TYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TY  LI   + + GR  +A+ +   +       N  V++ +ID  C+ G           
Sbjct: 257 TYGALIK-GFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQD 315

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           +  +G++P +V YN L+NGLC+   +  A+ ++ +MK  G  PD  ++ T+I G
Sbjct: 316 MRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDG 369



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  ++D A+       +K + LD   Y++LI+GL    R  +A  +  +M
Sbjct: 362 TYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREM 421

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   +  +  TY  +I     K    +   LL+ ++    +  +  Y+++++GLC++G+ 
Sbjct: 422 MEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQM 481

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L  +   G+ P  +TYNIL++G CK G +  +++L      KG  PD   + ++
Sbjct: 482 KNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEEL---ESSKGMVPDFAVYTSL 538

Query: 187 IQGFL----VKNETDR 198
           I         KN  DR
Sbjct: 539 ISELAKKKPAKNYHDR 554



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 39/160 (24%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+++GI L   V S L++ L +     EA   + +++  G+  E   +N L+ D      
Sbjct: 145 ALRRGISLPAPVCSGLMSRLPS---TPEAYTFYLQLLDAGMAPETRLFNVLMRD------ 195

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
                                          R+G    ARK  D++  + + P VVT+N 
Sbjct: 196 -----------------------------FVRLGELVSARKVFDEM-RRSVQPTVVTFNT 225

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LI+G+C+   +   D L  +M + G  PD  ++  +I+GF
Sbjct: 226 LISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGF 265


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 10/212 (4%)

Query: 4   TEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
            + R +G   N   Y   I+G CK   +D AI       ++G+ L+V  Y+ L++GLC  
Sbjct: 317 AQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKE 376

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA ++   M   G+ A  + Y  LIH ++  +    A+ LL  ++    EL+I +Y
Sbjct: 377 RKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I GLC V + +EA+  L ++ E GL P  + Y  +++   K G + EA  +L ++ +
Sbjct: 437 GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD 496

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++  +I G       D A S   K
Sbjct: 497 SGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+ LD+ +Y +LI GLC  ++L EA  L  KM   G+    + Y  ++ D   K G+  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM-DACFKSGKVP 485

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+A+LQ +    ++ N+  Y  +IDGLC+ G  +EA    +++ + GL P V  Y  L+
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +GLCK G + EA +L  +M  KG   D   +  ++ G+L
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYL 584



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   DV  Y++LIN  C F R++ A   F  M  +G+ A +VT++  + D + K+G  
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV-DAFCKEGLV 309

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L   +      LN   Y+ +IDG C+ GR ++A   LD++  +G+   VVTY +L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++GLCK+  + EA+ +L  M++ G   +   + T+I G  +   +++A   L +
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   Y   I+G+CK   ID AI         G+  +V  Y++L++GLC    L EAV
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           +LF++MV +G++ + V Y  L+ D + KQG    A AL   +     +L++  Y+  I G
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALL-DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C +    EAR+   ++   G+ P    YN LI+   K G + EA  L  +M+     P 
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLPS 675

Query: 180 STSFNTVIQG 189
            T  +T   G
Sbjct: 676 CTDSDTATDG 685



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   IN  CK   +++A        ++G+  +V  +S+ ++  C    ++EA++
Sbjct: 255 KADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMK 314

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +M  +G+     TY  LI D   K GR   A+ LL  + R    LN+  Y++++DGL
Sbjct: 315 LFAQMRVRGMALNEFTYTCLI-DGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  +  EA   L  + + G+    + Y  LI+G        +A  LL +MK KG   D 
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           + +  +IQG    ++ D A S L K
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTK 458



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           +VF ++ +I+ LC    L EA  LF +M   G   ++VT+N LI D + K G    +  L
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLI-DGYGKCGELDEVEQL 245

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ + R   + ++  Y+ +I+  C+ GR E A      +  +G++  VVT++  ++  CK
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G++ EA KL  QM+ +G   +  ++  +I G       D A
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDA 347



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L+E + KG   +  +YG  I G+C + ++D A        + G+  +  +Y+++++    
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             ++ EA+ +  K++  G    ++TY  LI D   K G    A++    +     + N++
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALI-DGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++DGLC+ G   EA +  +++  KG+    V Y  L++G  K+G + +A  L  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            + G   D   +   I GF
Sbjct: 600 IDSGLQLDLFCYTCFISGF 618



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R GR    R+  +QL      P V T+NI+I+ LCK+G + EA  L  +MKE GC PD  
Sbjct: 171 RSGRL--VRRLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +FN++I G+    E D     +++
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEE 248


>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
 gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
 gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
 gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
 gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 545

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 4/181 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  + +G    V  +S+++  LC   R+  A+E+FD M A G    + TYN LI     
Sbjct: 186 LDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLI-GGLC 244

Query: 88  KQGRFS-AMALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             GR   A+ LL  L E  K   +I  +++V+DG C+VGR +EA          GL P +
Sbjct: 245 YVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTI 304

Query: 146 VTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            TYN L+NG CK+G  ++A  LL++M     C PD  SF+ V+Q  L   ET  A    K
Sbjct: 305 FTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYK 364

Query: 205 K 205
           +
Sbjct: 365 R 365



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           L V  Y+ +++ L        AV LF  +   G+T +  +Y   +     K     A   
Sbjct: 126 LTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEA 185

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +    +   +  +S V+  LC+ GR   A +  D +   G  P + TYN LI GLC 
Sbjct: 186 LDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCY 245

Query: 158 KGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G + EA  LL ++KE     PD  +F  V+ GF     TD A+   
Sbjct: 246 VGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIF 292



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA+AL + L  +    + + Y+  +  LCR G  +EA++ LD++  +G  P V T++ ++
Sbjct: 146 SAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVV 205

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LCK+G +  A ++   M+  GC P   ++N++I G       + A   L K
Sbjct: 206 GCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNK 258



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 14/207 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
               Y   I G+C +  ++ A+              D++ ++ +++G C   R  EA  +
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPI 291

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLC 121
           F   V  G++  + TYN L++ + ++     A +LL  +  +       + +S+V+  L 
Sbjct: 292 FHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALL 351

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-----GMIMEADKLLVQMKEKGC 176
           R G    A +   ++   G        + L  GLC++       + +A ++  ++   G 
Sbjct: 352 RAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREVFGKLVASGH 411

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFL 203
            P S ++  + Q      E D A S L
Sbjct: 412 EPVSYTYCLMAQALARGGEVDAAVSLL 438



 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           E+F K+VA G      TY  L+     + G   +A++LL  + R  Y L    Y+ V+  
Sbjct: 401 EVFGKLVASGHEPVSYTYC-LMAQALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRA 459

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           LC  GR  +A + L  +  +  VPG   ++ L+  L ++G   +A  +     ++G
Sbjct: 460 LCERGRARDALRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRG 515


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I+ A+        KGI + V+ Y+SLING C    L  A  L   M
Sbjct: 375 TYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM 434

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+T    +Y+PLI          SAM L + +       N   ++ +I+G C+  + 
Sbjct: 435 VKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKM 494

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +  D++ +  ++P  VT+N++I G C  G I +A +L  QM E G  PD+ ++ ++
Sbjct: 495 DEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554

Query: 187 IQGFLVKNETDRASSFL 203
           I G  + +   +A+ F+
Sbjct: 555 ISGLCLTSGVSKANEFV 571



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 89/171 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +VF Y++LI+ LC   R  +A  LF +M  +G+    VTY  LIH   ++     A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +     ++ +  Y+ +I+G C+ G  + AR  L  + ++GL P   +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G +  A +L  +M E+G   ++ +F  +I GF    + D A+    K
Sbjct: 453 LCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 10/193 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK    D A +       +G+  +   Y+ LI+ LC    +++A+ LF
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM  +GI   +  YN LI + + KQG    A  LL  + ++        YS +I GLCR
Sbjct: 397 DKMRDKGIKVTVYPYNSLI-NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G    A +   +++E+G+     T+  LING CK   + EA +L  +M +    P+  +
Sbjct: 456 NGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 183 FNTVIQGF-LVKN 194
           FN +I+G+ LV N
Sbjct: 516 FNVMIEGYCLVGN 528



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G   +   ++ LIN LC    L  A  L  +M+A  +     TYN  + D +  
Sbjct: 677 DQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFL-DYFAT 735

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L +     +  +I  ++++I GLC+ G+ +EA   + +++E G  P  ++Y
Sbjct: 736 EGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISY 795

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +I+ LCK G I +A +L  +M  KG  PD  ++N  I+   V  E+D+A
Sbjct: 796 STIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 2   DLTEQRFKGNFH----VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           DL ++  +   H    VY   I   C+ R +D A         +G+      Y+ L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   R++EAVE+ + MV  G+TA+ VTY  L++     +    A+ +   + R  +  + 
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              S +ID L +    EEA     +L + G+VP V  YN LI+ LCK     +AD+L  +
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  +G  P+  ++  +I   
Sbjct: 364 MAGRGLEPNEVTYAILIHAL 383



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD + ++  K   + Y   ING CK   +D A       +K+G+      YS LI GLC 
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              L  A+EL  +M  +GI     T+  LI+   + +    A  L   +       N   
Sbjct: 456 NGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++I+G C VG   +A +  DQ+ E GL P   TY  LI+GLC    + +A++ +  ++
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 173 EKGCFPDSTSFNTVIQGFL 191
                 ++ S   ++ G  
Sbjct: 576 NSYAVLNNFSLTALLYGLF 594



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNR 55
           + E   K + + Y   I+G+C      K  E  + ++     L+ F  ++L+ GL    R
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGR 598

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             E   L+D+M  +G+  +LV++  +++   ++  +  +  L + ++    + +   Y+ 
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID L +     +A    DQ+   G  P  VT+ +LIN LCK G +  A+ L  +M    
Sbjct: 659 MIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  ++N  +  F  + + ++A
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKA 742



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N + +   ING CK +++D A       I   +  +   ++ +I G C   
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVG 527

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+MV  G+  +  TY  LI       G   A   +  LE     LN    +
Sbjct: 528 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 587

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GL R GR+ E     D+++ +G+   +V++ I++    K+    ++  L  +MKE+
Sbjct: 588 ALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD   +  +I   
Sbjct: 648 GVKPDDIFYTCMIDAL 663



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 47/229 (20%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           E RF   +H++             D    +G+ LD+  ++ ++      +  +++  LF 
Sbjct: 596 EGRFTETYHLW-------------DEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFR 642

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  QG+  + + Y  +I    +++    A+     +  D Y  N   ++++I+ LC+ G
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSG 702

Query: 125 RWEEAR----------------------------------KKLDQLSEKGLVPGVVTYNI 150
               A                                   K L     +G +  +V++NI
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI GLCK G I EA  L+ ++ E G  PD  S++T+I       + ++A
Sbjct: 763 LIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKA 811



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 14/192 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  N   + + IN +CK   + SA       +   +  + F Y+  ++   T   +++A 
Sbjct: 684 YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAK 743

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L   M+ QG  A +V++N LI    +      A+ L++ +    +  +   YS +I  L
Sbjct: 744 DLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHEL 802

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL---VQMKEKGCF 177
           C++G   +A +  +++  KGL P VV YNI I      G   E+DK L     M   G  
Sbjct: 803 CKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHG---ESDKALGIYTNMIRSGVQ 859

Query: 178 PDSTSFNTVIQG 189
           P+  ++  ++ G
Sbjct: 860 PNWDTYRALLSG 871



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI ++ +  S ++  L    +   A +LFDKM+  G+  +   Y   I    E + 
Sbjct: 154 SLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRN 213

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L+  +E +  + +   Y++++ GLC+  R +EA +  + +   G+    VTY  
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           L+ G C+   +  A ++   M   G  P   + + +I     K   + A S 
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSL 325


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 4/169 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMA 96
           D   Y+++I+GLC   RL EA +LF +M+A G    +VTY  LIH  W  ++  F  A+ 
Sbjct: 304 DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIH--WLAREACFDDALK 361

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   + R     N+  YS +IDGLC+ GR   A + LD++ ++  +P  +TY+ +I+GLC
Sbjct: 362 LFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLC 421

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A ++L +M+ +G  PD+  F  +I G         AS++L +
Sbjct: 422 KEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDE 470



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++  D   ++GI  +V  YSSLI+GLC   R   AVEL D+MV +      +TY+ +I D
Sbjct: 360 LKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVI-D 418

Query: 85  NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
              K+G    AM +L  +     + +  ++  +I GLC  GR  EA   LD+++  G+ P
Sbjct: 419 GLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRP 478

Query: 144 GVVTYNI-------LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             +T+++       ++  LC KG ++ A ++   M+ +G     T+F+ +++    KN  
Sbjct: 479 NRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNL 538

Query: 197 DRASSFLK 204
           ++A+  ++
Sbjct: 539 EKAAHVVR 546



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+   +  A       I  G    V  Y++LI+ L       +A++LFD+M 
Sbjct: 308 YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMA 367

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   +VTY+ LI D   K GR  SA+ LL  + +++   N   YS VIDGLC+ G  
Sbjct: 368 RRGIMPNVVTYSSLI-DGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCL 426

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            +A + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 427 GQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLH 486

Query: 184 ----NTVIQGFLVKNETDRA 199
               + V+     K E  RA
Sbjct: 487 GRINDAVVTALCSKGEVVRA 506



 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           P   +YN +I+GLC++G + EA  L  +M   G  P   ++ T+I 
Sbjct: 303 PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIH 348



 Score = 37.4 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ V+  L        AR  L  +   G  P   TYN+L+   C    +   D   V++ 
Sbjct: 240 YTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDA--VRVF 297

Query: 173 EKGCFPDSTSFNTVIQGF 190
                PD+ S+NTVI G 
Sbjct: 298 RNIPKPDACSYNTVIDGL 315


>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g17670-like [Glycine max]
          Length = 456

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 44/205 (21%)

Query: 9   KGNFHVYGIRINGMCK---------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEA 59
           K +   Y I I+ +C          +R +    ++G  LD FVY++++ G C  +R  EA
Sbjct: 218 KPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRGSEA 277

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +E+++KM  +G+  +LVTYN LI                                    G
Sbjct: 278 IEVYNKMKEEGVEPDLVTYNTLIF-----------------------------------G 302

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L + GR  EARK L  ++EKG  P  VTY  L+NGLC+KG  + A  LL +M+ KGC P+
Sbjct: 303 LSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPN 362

Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
           + ++NT++ G       ++A  F +
Sbjct: 363 ACTYNTLLHGLCKARLVEKAVKFYQ 387



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 10/189 (5%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + +  +C    +D A++       K    D + ++ L+  LC  + +       D+M  +
Sbjct: 155 VAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSSTITTVYAFIDEMREK 214

Query: 70  -GITAELVTYNPLIHD--NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +  +LVTY  LI +  N +      AM L+  L  + ++L+  VY+ ++ G C + R 
Sbjct: 215 FDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRG 274

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA +  +++ E+G+ P +VTYN LI GL K G + EA KLL  M EKG FPD  ++ ++
Sbjct: 275 SEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSL 334

Query: 187 IQGFLVKNE 195
           + G   K +
Sbjct: 335 MNGLCRKGD 343



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI  D       +  LC+  RL  AVEL  +  ++    +  T+N L+    +    
Sbjct: 142 LAAGITPDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSSTI 201

Query: 92  FSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVV 146
            +  A +  + R+K+++  ++  Y+++ID +C  G+     EA + +  L E+G      
Sbjct: 202 TTVYAFIDEM-REKFDVKPDLVTYTILIDNVCN-GKNLNLREAMRLVSVLHEEGFKLDCF 259

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            YN ++ G C      EA ++  +MKE+G  PD  ++NT+I G         A   L+
Sbjct: 260 VYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLR 317



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
           N L    +  + M+A GIT +  T +  +  +    GR   A+ L++         +   
Sbjct: 129 NLLSPIHQXLNLMLAAGITPDTATADVAVR-SLCSAGRLDHAVELIKEFASKHCPPDTYT 187

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLC--KKGMIMEADKLLV 169
           ++ ++  LC+          +D++ EK  + P +VTY ILI+ +C  K   + EA +L+ 
Sbjct: 188 FNFLVKHLCKSSTITTVYAFIDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVS 247

Query: 170 QMKEKGCFPDSTSFNTVIQGFLV 192
            + E+G   D   +NT+++G+ V
Sbjct: 248 VLHEEGFKLDCFVYNTIMKGYCV 270



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L+ +   G+ P   T ++ +  LC  G +  A +L+ +   K C PD+ +FN     
Sbjct: 135 HQXLNLMLAAGITPDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFN----- 189

Query: 190 FLVKN 194
           FLVK+
Sbjct: 190 FLVKH 194


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 10/212 (4%)

Query: 4   TEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
            + R +G   N   Y   I+G CK   +D AI       ++G+ L+V  Y+ L++GLC  
Sbjct: 317 AQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKE 376

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA ++   M   G+ A  + Y  LIH ++  +    A+ LL  ++    EL+I +Y
Sbjct: 377 RKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I GLC V + +EA+  L ++ E GL P  + Y  +++   K G + EA  +L ++ +
Sbjct: 437 GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD 496

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++  +I G       D A S   K
Sbjct: 497 SGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+ LD+ +Y +LI GLC  ++L EA  L  KM   G+    + Y  ++ D   K G+  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM-DACFKSGKVP 485

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+A+LQ +    ++ N+  Y  +IDGLC+ G  +EA    +++ + GL P V  Y  L+
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +GLCK G + EA +L  +M  KG   D   +  ++ G+L
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYL 584



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   DV  Y++LIN  C F R++ A   F  M  +G+ A +VT++  + D + K+G  
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV-DAFCKEGLV 309

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L   +      LN   Y+ +IDG C+ GR ++A   LD++  +G+   VVTY +L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++GLCK+  + EA+ +L  M++ G   +   + T+I G  +   +++A   L +
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ N   Y   I+G+CK   ID AI         G+  +V  Y++L++GLC    L EAV
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
           +LF++MV +G++ + V Y  L+ D + KQG    A AL   +     +L++  Y+  I G
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALL-DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C +    EAR+   ++   G+ P    YN LI+   K G + EA  L  +M+     P 
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLPS 675

Query: 180 STSFNTV 186
            T  +T 
Sbjct: 676 CTDSDTA 682



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   IN  CK   +++A        ++G+  +V  +S+ ++  C    ++EA++
Sbjct: 255 KADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMK 314

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +M  +G+     TY  LI D   K GR   A+ LL  + R    LN+  Y++++DGL
Sbjct: 315 LFAQMRVRGMALNEFTYTCLI-DGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  +  EA   L  + + G+    + Y  LI+G        +A  LL +MK KG   D 
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           + +  +IQG    ++ D A S L K
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTK 458



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           +VF ++ +I+ LC    L EA  LF +M   G   ++VT+N LI D + K G    +  L
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLI-DGYGKCGELDEVEQL 245

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ + R   + ++  Y+ +I+  C+ GR E A      +  +G++  VVT++  ++  CK
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G++ EA KL  QM+ +G   +  ++  +I G       D A
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDA 347



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L+E + KG   +  +YG  I G+C + ++D A        + G+  +  +Y+++++    
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             ++ EA+ +  K++  G    ++TY  LI D   K G    A++    +     + N++
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALI-DGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++DGLC+ G   EA +  +++  KG+    V Y  L++G  K+G + +A  L  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            + G   D   +   I GF
Sbjct: 600 IDSGLQLDLFCYTCFISGF 618



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R GR    R+  +QL      P V T+NI+I+ LCK+G + EA  L  +MKE GC PD  
Sbjct: 171 RSGRL--VRRLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +FN++I G+    E D     +++
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEE 248


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 104/185 (56%), Gaps = 7/185 (3%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + +GI I G C+  EI+ +        + G   +V +Y++LI+G C    +++A +LF +
Sbjct: 164 YSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G+ A   TY  LIH  ++   +     + + ++      N+  Y+ V++ LC+ GR
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGR 283

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A K  D++ E+G+   +VTYN LI GLC++    EA++++ QMK  G  P+  ++NT
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNT 343

Query: 186 VIQGF 190
           +I GF
Sbjct: 344 LIDGF 348



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 104/201 (51%), Gaps = 2/201 (0%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           F L    +     ++G+  NG+ K      +   + G+  ++  Y+ ++N LC   R K+
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKD 286

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++FD+M  +G++  +VTYN LI     +     A  ++  ++ D    N+  Y+ +ID
Sbjct: 287 AFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLID 346

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C V +  +A      L  +GL P +VTYNIL++G CKKG    A K++ +M+E+G  P
Sbjct: 347 GFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++  +I  F   +  ++A
Sbjct: 407 SKVTYTILIDTFARSDNMEKA 427



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L E  F  N  +Y   I+G CK  EI+ A        K G+  + + Y+ LI+GL    
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
             K+  E+++KM   G+   L TYN  + +   K GR   A  +   +       NI  Y
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLHTYN-CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLCR  +  EA + +DQ+   G+ P ++TYN LI+G C    + +A  L   +K 
Sbjct: 307 NTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKS 366

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P   ++N ++ GF  K +T  A   +K+
Sbjct: 367 RGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+  +       +D     GI  ++  Y++LI+G C   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVR 352

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A+ L   + ++G++  LVTYN L+    +K     A  +++ +E    + +   Y+
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYT 412

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   R    E+A +    + E GL P V TY++LI+G C KG + EA +L   M EK
Sbjct: 413 ILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEK 472

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              P+   +NT++ G+  +  + RA
Sbjct: 473 KFEPNEVIYNTMVLGYCKEGSSYRA 497



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C +R++  A+        +G+   +  Y+ L++G C       A ++ 
Sbjct: 337 NLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVV 396

Query: 64  DKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
            +M  +GI    VTY  LI      DN EK     A+ L  ++E      ++  YS++I 
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEK-----AIQLRSSMEELGLTPDVHTYSVLIH 451

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  GR  EA +    + EK   P  V YN ++ G CK+G    A +L  +M+EK   P
Sbjct: 452 GFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPP 511

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  S+  +I+    + ++  A   ++K
Sbjct: 512 NVASYRYMIEVLCKERKSKEAEGLVEK 538



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 10/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL  +    +   Y I ++G CK  +   A K       +GI      Y+ LI+     +
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A++L   M   G+T ++ TY+ LIH    K     A  L +++   K+E N  +Y+
Sbjct: 423 NMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYN 482

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G    A +   ++ EK L P V +Y  +I  LCK+    EA+ L+ +M + 
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDS 542

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRAS 200
           G  P  +  N + +    KN++   S
Sbjct: 543 GIGPSDSILNLISRA---KNDSHSRS 565



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y  +IN       L  ++  F++MV +G       +N L+         F+        
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLL-TFVVGSSSFNQWWCFFNE 154

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            + K  L++  + +VI G C  G  E++   L +L E G  P VV Y  LI+G CKKG I
Sbjct: 155 SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            +A  L  +M + G   +  ++  +I G L KN
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHG-LFKN 246



 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 35/143 (24%)

Query: 92  FSAMALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG------ 144
           F++ +LL  L E +  +    +Y ++I+   +    + +    +++ +KG VPG      
Sbjct: 75  FTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNN 134

Query: 145 ----------------------------VVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
                                       V ++ I+I G C+ G I ++  LLV+++E G 
Sbjct: 135 LLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF 194

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            P+   + T+I G   K E ++A
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKA 217


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 13/194 (6%)

Query: 10  GNFH----VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           GN H    ++ + I G+CK   I       +S   K    D F YSSLI+G      + E
Sbjct: 694 GNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDE 753

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A  L D M++ G+T  ++TYN LI+    K G+ S A+ L   L+      N   Y+ +I
Sbjct: 754 AFSLRDVMLSAGLTPNIITYNSLIY-GLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLI 812

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D  C+ G+  EA K   ++ E+G+ P V+TY+ILI GLC +G + EA KLL QM E    
Sbjct: 813 DEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVD 872

Query: 178 PDSTSFNTVIQGFL 191
           P+  ++ T+I G++
Sbjct: 873 PNYITYCTLIHGYI 886



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKI---REIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   ING+CK+    E+   +++    G+  D + Y++LI+G C    +++A E+ 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G+ A  +TYN L+           A+ L   + +     N    S ++DGL + 
Sbjct: 418 RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKA 477

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A     +   +GL   V+T+N +INGLCK G + EA++LL +MKE  C PDS ++
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTY 537

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+  G+    +   A+  + K
Sbjct: 538 RTLFDGYCKLGQLGTATHLMNK 559



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L  +RF  +   Y   I+G      ID A       +  G+  ++  Y+SLI GLC   +
Sbjct: 726 LRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGK 785

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L  AV LF+K+ ++GI+   +TYN LI D + K+G+ + A  L Q +  +  +  +  YS
Sbjct: 786 LSRAVNLFNKLQSKGISPNGITYNTLI-DEYCKEGKTTEAFKLKQKMVEEGIQPTVITYS 844

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC  G  EEA K LDQ+ E  + P  +TY  LI+G  K G + E  KL  +M  +
Sbjct: 845 ILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIR 904

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P +   N      +V N  +R    +K
Sbjct: 905 GLLPTNWIGNWKRSDPVVVNNWNRKDGHMK 934



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHD 84
           R ++S  +KG+  +V  Y+ L+ G C   R++EA  +  +M   G I  + V Y  +I +
Sbjct: 274 RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI-N 332

Query: 85  NWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            + ++GR      ++   RD    +N+ VY+ +I+GLC++GR EE +K L ++ + G+ P
Sbjct: 333 GYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRP 392

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +YN LI+G C++G + +A ++   M   G    + ++NT+++GF   +  D A
Sbjct: 393 DKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  +V  ++++INGLC   R+ EA EL D+M       + +TY  L  D + K G+
Sbjct: 491 LARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLF-DGYCKLGQ 549

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             +A  L+  +E   +  ++E+++  I G     +W +      ++S +GL P +VTY  
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI G CK+G + EA  L  +M   G  P+    + ++  F  + + D A+  L+K
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQK 664



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQG 90
           G+  D F  + +    C   R+ +AVE  ++M   G+   LV Y+ ++       W +  
Sbjct: 213 GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDA 272

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYN 149
           R     +L++L+R     N+  Y+L++ G C+ GR EEA + + ++ E G +V   V Y 
Sbjct: 273 R----RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++ING C++G + +A ++  +M++ G   +   +NT+I G 
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGL 369



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK---IREIDSAIKK-----GICLDVFVYSSLINGLCTFN 54
           L  +    N   Y + + G CK   + E +  +K+      I +D   Y  +ING C   
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
           R+ +A  + ++M   GI   L  YN +I +   K GR   +  +LQ +E      +   Y
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMI-NGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG CR G   +A +    +   GL    +TYN L+ G C    I +A +L   M +
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK 457

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G  P+  S +T++ G     +T++A +  K+ +
Sbjct: 458 RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL 491



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD 104
           L+N L        A  ++ +M   G+  +  T   ++   + + GR + A+  ++ +E  
Sbjct: 189 LLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTV-AIMAKAYCRDGRVAQAVEFVEEMEGM 247

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             E+N+  Y  V+D  C +G  E+AR+ L+ L  KGL P VVTY +L+ G CK G + EA
Sbjct: 248 GLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEA 307

Query: 165 DKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRAS 200
           ++++ +MKE G    D  ++  +I G+  +   D A+
Sbjct: 308 ERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 33/231 (14%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +    N   YG  I G CK   +  A       +  G+  +VF+ S+L++      
Sbjct: 594 EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEG 653

Query: 55  RLKEAVELFDKMV----AQGITAELVTYNPLIH--DN------------WE-------KQ 89
           ++ EA  +  K+V      G +   +  + + H  D             W        K 
Sbjct: 654 KVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKS 713

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           GR + A +L ++L   ++  +   YS +I G    G  +EA    D +   GL P ++TY
Sbjct: 714 GRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITY 773

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N LI GLCK G +  A  L  +++ KG  P+  ++NT+I  +  + +T  A
Sbjct: 774 NSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 23/195 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++D A       +++G+ +DV VY+ L+NG C   RL+EA +LF +M 
Sbjct: 318 YSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT 377

Query: 68  AQGITAELVTYNPLI--------HDNWEKQG--------RFSAMALLQTLERDKYELNIE 111
             GI  +++ Y  L+           WE           R +   LL +++  + E ++ 
Sbjct: 378 NLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVP 437

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+     EAR+  D++ +KGL P    Y  LING C +G I +A+ LL +M
Sbjct: 438 CYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEM 497

Query: 172 KEKGCFPDSTSFNTV 186
            +KG  PD  +F+ V
Sbjct: 498 IDKGIEPDELTFSEV 512



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD  +Y+  ++  C    + EAV+L ++M   G+T + + Y  LI+    K    +A
Sbjct: 100 GLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNA 159

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + + +   E +I  Y+++  G C+ G   E    LD+++++GL P  +TY I I G
Sbjct: 160 QQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVG 219

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            C+ G + EA+ L   ++EKG       +++++ G+L+   TD A
Sbjct: 220 FCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHA 264



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + +Q  + N   YGI I G C+   +  A        +KGI     +YSS++ G      
Sbjct: 201 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGW 260

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  LF ++  QG   +  + + LI+D         A  + + +       ++  YS 
Sbjct: 261 TDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSK 320

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   C+ G  ++A      + ++GL   V+ Y IL+NG CK G + EA +L VQM   G
Sbjct: 321 LISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLG 380

Query: 176 CFPDSTSFNTVIQGFL 191
             PD  ++  ++ G L
Sbjct: 381 IKPDVIAYTVLLDGHL 396



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
             Y+ +++GLC   RL EA +L +    QG   ++  Y+ LI    +      A+   + 
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +     E N  + S ++    ++G   E      +  + GL    V YNI ++  CK G 
Sbjct: 61  MVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGN 120

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA KLL +MK  G  PD   +  +I G+ +K E   A    ++
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEE 165



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 7/198 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I ++  CK   ++ A+K        G+  D   Y+ LING C    ++ A ++F++M
Sbjct: 107 IYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEM 166

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   I  ++VTYN L     +         LL  +     E N   Y + I G CR G  
Sbjct: 167 LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNL 226

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    + + EKG+    V Y+ ++ G    G    A  L V++  +G   D  S + +
Sbjct: 227 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKL 286

Query: 187 IQGFLVKNETDRASSFLK 204
           I           AS+  K
Sbjct: 287 INDLCRVGNVQGASNVCK 304


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H++ I  +   K   ID A+       + G+  D   Y +LI+ LC   R+ +A   F
Sbjct: 29  NHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKF 88

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+T  +V ++ L++     D WEK        L   +       NI  ++ ++ 
Sbjct: 89  NQMINEGVTPNIVVFSSLVYGLCSIDKWEK-----VEELFFEMLNVGIHPNIVFFNTILC 143

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  E ++ +D +   G+ P V++YN LI+G C  G I EA KLL  M   G  P
Sbjct: 144 NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKP 203

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +S S+NT++ G+      D A S  +K
Sbjct: 204 NSFSYNTLLHGYCKAGRIDSAYSLFRK 230



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ++G CK   IDSA       +  GI   V  Y+++++GL    R  EA 
Sbjct: 201 LKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 260

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+  M+  G    + TYN +++   +      A  + Q+L     +LNI  ++++I  L
Sbjct: 261 ELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGAL 320

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR E+A      +   GLVP VVTY ++   L ++G + E D L   M++ G  P+S
Sbjct: 321 LKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNS 380

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
              N +++  L + +  RA ++L K
Sbjct: 381 QMLNALVRRLLHRGDISRAGAYLSK 405



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  I+ +CK+  +D A       I +G+  ++ V+SSL+ GLC+ ++ ++  ELF +M+
Sbjct: 68  YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEML 127

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI   +V +N ++  N  K+GR      L+ ++E      ++  Y+ +IDG C  G  
Sbjct: 128 NVGIHPNIVFFNTILC-NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 186

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA K L+ +   GL P   +YN L++G CK G I  A  L  +M   G  P   ++NT+
Sbjct: 187 DEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTI 246

Query: 187 IQGFL 191
           + G  
Sbjct: 247 LHGLF 251



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +DS    G+  DV  Y++LI+G C    + EA +L + MV+ G+     +YN L+H  
Sbjct: 156 RLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLH-G 214

Query: 86  WEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           + K GR  SA +L + +  +     +  Y+ ++ GL +  R+ EA++    +   G   G
Sbjct: 215 YCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWG 274

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           + TYN ++NGLCK   + EA K+   +  KG   +  +F T++ G L+K
Sbjct: 275 IYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF-TIMIGALLK 322



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K   + Y   +NG+CK   +D A K       KG+ L++  ++ +I  L    R ++A++
Sbjct: 272 KWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMD 331

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGL 120
           LF  + A G+  ++VTY  ++ +N  ++G      +L   +E++    N ++ + ++  L
Sbjct: 332 LFAAIPANGLVPDVVTYR-VVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 390

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              G    A   L +L E+       T ++LI+
Sbjct: 391 LHRGDISRAGAYLSKLDERNFSVEASTTSMLIS 423



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 86  WEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           +  +G  S M  LL  +  +    N  ++++      + G  ++A    +++ + GL P 
Sbjct: 5   YGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPD 64

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            V+Y  LI+ LCK G + +A+    QM  +G  P+   F++++ G 
Sbjct: 65  AVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGL 110



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 36/84 (42%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G    G   E    L+ +   G+ P    +NI  +   K GMI +A  +  +M++ G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD+ S+  +I         D A
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDA 84


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 4/190 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK--KGICL--DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   +NG C+   I+ A +   G+    D F ++ LI  LC   R+ +A+ +FD M+ +
Sbjct: 132 TYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHR 191

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G +  +VTY+ L+    +  G   AM LL  +     E +I  Y+++I+ +C  G  +EA
Sbjct: 192 GCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEA 251

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L  L   G  P  VTY  ++  LC      E ++L  +M    C PD  +FNT++  
Sbjct: 252 LNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTS 311

Query: 190 FLVKNETDRA 199
              +   DRA
Sbjct: 312 LCQQGLVDRA 321



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 17/184 (9%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +  +C+   +D AIK        G   D+  YSS+++GLC   R+ +AVEL  ++ + G 
Sbjct: 309 VTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 368

Query: 72  TAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             + + Y  ++      + WE      A  +      D+   N      VI  LC+ G  
Sbjct: 369 KPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT-----VIASLCQKGLV 423

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A K ++Q+SE G  P +VTYN +I+GLC +  I +A +LL  ++  GC PD  +FNT+
Sbjct: 424 DRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTL 483

Query: 187 IQGF 190
           ++G 
Sbjct: 484 LKGL 487



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++E     +   Y   ++G+C +  +D A++        G   D   Y++++ GLC+  +
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A EL  +MV      + VT+N +I    +K     A+ +++ +  +    +I  Y+ 
Sbjct: 388 WEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNS 447

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC     ++A + L  L   G  P +VT+N L+ GLC      +A++L+V M    
Sbjct: 448 IIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSD 507

Query: 176 CFPDSTSFNTVIQGFLVK 193
           C PD+T+FNTVI     K
Sbjct: 508 CPPDATTFNTVITSLCQK 525



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA---IKKGICLDV----FVYSSLINGLCTFNRLKEAVE 61
           K +   Y   + G+C I + + A   + + +C D       ++++I  LC    +  A++
Sbjct: 369 KPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIK 428

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + ++M   G   ++VTYN +I     ++    AM LL  L+    + +I  ++ ++ GLC
Sbjct: 429 VVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLC 488

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            V RWE+A + +  +      P   T+N +I  LC+KG++++A + L  M E GC P+ +
Sbjct: 489 SVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQS 548

Query: 182 SFNTVIQGFLVKNETDRASSFLK 204
           ++N V+   L   +T  A   L 
Sbjct: 549 TYNIVVDALLKAGKTQEALKLLS 571



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 106/217 (48%), Gaps = 19/217 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+  +    +   Y I ++  CK          +D    KG   D+  Y+ LIN +C   
Sbjct: 187 DMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI-----HDNW-EKQGRFSAMALLQTLERDKYEL 108
            + EA+ +   + + G   + VTY P++      + W E +  F+ MA       +K   
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMA------SNKCAP 300

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   ++ ++  LC+ G  + A K +D +SE G +P +VTY+ +++GLC  G + +A +LL
Sbjct: 301 DEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELL 360

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++K  GC PD+ ++ TV++G     + + A   + +
Sbjct: 361 SRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 20/200 (10%)

Query: 18  RINGMCKIREIDSAIK----------KGICLDVFVYSS--LINGLCTFNRLKEAVELFDK 65
           R+  + +  EID A+            G CL + V     LI  LC+  R+ +A  +F  
Sbjct: 64  RLRSLIQREEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFAT 123

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +   G +A +VTYN +++  + + GR   A  L+  +    +  +   ++ +I  LC  G
Sbjct: 124 L---GASATVVTYNTMVN-GYCRAGRIEDARRLISGM---PFPPDTFTFNPLIRALCVRG 176

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  +A    D +  +G  P VVTY+IL++  CK     +A  LL +M+ KGC PD  ++N
Sbjct: 177 RVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYN 236

Query: 185 TVIQGFLVKNETDRASSFLK 204
            +I     + + D A + L 
Sbjct: 237 VLINAMCNEGDVDEALNILS 256



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 40/237 (16%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++E     +   Y   I+G+C  R ID A++        G   D+  +++L+ GLC+ +R
Sbjct: 433 MSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDR 492

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A +L   M+      +  T+N +I    +K     A+  L+ +  +    N   Y++
Sbjct: 493 WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNI 552

Query: 116 VIDGLCRVGRWEEARKKLDQLS---------------------------------EKGLV 142
           V+D L + G+ +EA K L  ++                                   GL 
Sbjct: 553 VVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLS 612

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           P  +TY  L  G+C++     A ++L ++++ G  PD+T +N ++ GF     TD A
Sbjct: 613 PDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIA 669



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y+ +++ L    + +EA++L   M     T +L+TYN +I  N  K G+   A+ LL+ 
Sbjct: 549 TYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVIS-NITKAGKMEEALDLLRV 605

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +  +    +   Y  +  G+CR    + A + L +L + GL P    YN ++ G C+   
Sbjct: 606 MVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWR 665

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              A      M   GC PD +++  +++    +   D A   L
Sbjct: 666 TDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLL 708


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  + D A       + + I  +V  YSS+I  LC    + +A+E+ + MV
Sbjct: 207 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMV 266

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+  L+ +  D  E N+  Y  +++ LC+ GR  
Sbjct: 267 KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCT 326

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  PD   FN +I
Sbjct: 327 EARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 386

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 387 CAYAKQEKVDQA 398



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 83/155 (53%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++ING        +A   + +M+ + I+  +VTY+ +I    + Q    AM +L
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            T+ ++    +   Y+ ++ G C  G+ +EA   L ++   G+ P VVTY  L+N LCK 
Sbjct: 263 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKN 322

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G   EA K+   M ++G  PD  ++ T++QG+  K
Sbjct: 323 GRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 357



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMV---AQGITAELVTYNPLIHDNWEKQGRFSAM 95
           DVF  + L+ GLC  NR +EA+EL   M      G   ++V+Y  +I+  +++     A 
Sbjct: 165 DVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 224

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +    +   +   N+  YS +I  LC+    ++A + L+ + + G++P  +TYN +++G 
Sbjct: 225 STYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 284

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           C  G   EA   L +M+  G  P+  ++ +++  +L KN
Sbjct: 285 CSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMN-YLCKN 322



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 14  VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDK 65
            Y I I   C+   +D       + IKKG  ++   ++ L+ GLC   R  +A+++   +
Sbjct: 97  TYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRR 156

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M       ++ +   L+    ++     A+ LL  +  D+      ++  Y+ VI+G  +
Sbjct: 157 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 216

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A     ++ ++ + P VVTY+ +I  LCK   + +A ++L  M + G  PD  +
Sbjct: 217 EGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 276

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N+++ G+    +   A   LKK
Sbjct: 277 YNSILHGYCSSGQPKEAIGTLKK 299



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C   +   AI         G+  +V  Y SL+N LC   R  EA ++FD M
Sbjct: 276 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSM 335

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  ++ TY  L+     K       ALL  + R+  + +  V++++I    +  + 
Sbjct: 336 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 395

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           ++A     ++ + GL P VV Y  +I+ LCK G + +A
Sbjct: 396 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVYSL 115
           A  + D++  +G  A + ++N  + D   +    +A++L   + R   D+   ++  YS+
Sbjct: 42  ARHVLDELPLRGWGASIYSFNRTLTD-VARDSPAAAVSLFNRMARAGADEVTPDLCTYSI 100

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMKEK 174
           +I   CR GR +     L  + +KG     +T+  L+ GLC      +A D +L +M E 
Sbjct: 101 LIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTEL 160

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            C PD  S   +++G   +N +  A   L
Sbjct: 161 SCMPDVFSCTILLKGLCDENRSQEALELL 189


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 110/193 (56%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+ +CK R ++ A+         GI   V  Y+SLI G+C   + K+A  LF +M+
Sbjct: 247 YSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEML 306

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              +  ++VT++ L+ D   K+G    A+++   + +   E +I  YS +I G+C+   W
Sbjct: 307 EWNMKPDVVTFSILV-DALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLW 365

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +E+   L+++  + + P VVT++I ++  CKKGM+ EA  ++  M E+G  P+  ++N++
Sbjct: 366 KESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSL 425

Query: 187 IQGFLVKNETDRA 199
           + G+ + ++ D A
Sbjct: 426 MDGYCLHSQMDEA 438



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IREIDSAIKKGICL----DVFVYSSLINGLCTFN 54
           ++ E   K +   + I ++ +CK   + E  S   K I +    D+  YSSLI+G+C  +
Sbjct: 304 EMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSS 363

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
             KE+  L ++M+++ I  ++VT++  + D + K+G  S A +++  +       N+  Y
Sbjct: 364 LWKESSTLLNEMLSRNIRPDVVTFSIWV-DVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DG C   + +EARK  D +  KG  P V++YNILI G CK   I EA +L  +M  
Sbjct: 423 NSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH 482

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  P+S +  T+I G         A    KK
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKK 514



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 105/207 (50%), Gaps = 8/207 (3%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK +   +   ING+C        + ++D  + +G    V+ ++ ++NGLC   +   A+
Sbjct: 170 FKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAI 229

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
               KMV      E+V+Y+ +I    + +    A+ L   +        +  Y+ +I G+
Sbjct: 230 VWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGM 289

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G+W++A     ++ E  + P VVT++IL++ LCK+G+++EA  +  +M +    PD 
Sbjct: 290 CNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDI 349

Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
            +++++I G + K+   + SS L   M
Sbjct: 350 VTYSSLIHG-VCKSSLWKESSTLLNEM 375



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N   Y   ++G C   ++D A       + KG   DV  Y+ LI G C   R
Sbjct: 410 MIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSER 469

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +LFD+M  +G+T   +T+  LI    +    ++A  L + +       ++  YS 
Sbjct: 470 IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYST 529

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C+ G  +EA    + L +  L P  V   IL+ G+CK G + +A +L   +  + 
Sbjct: 530 LLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEE 589

Query: 176 CFPD 179
             PD
Sbjct: 590 LQPD 593



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 82/152 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  I++G+  +V  Y+SL++G C  +++ EA ++FD MV +G   ++++YN LI    +
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCK 466

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A  L   +       N   ++ +I GLC+ GR   A++   ++   G  P ++T
Sbjct: 467 SERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLIT 526

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           Y+ L++G CK G + EA  L   +K+    P+
Sbjct: 527 YSTLLSGFCKHGHLDEALALFEALKKSQLKPN 558



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           G+   V+  + LIN LC  + +     +  K+   G    ++T+N LI +    +GR   
Sbjct: 134 GVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLI-NGLCIEGRIVE 192

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM  L  +    Y+  +  ++++++GLC++G+   A   + ++ E    P VV+Y+I+I+
Sbjct: 193 AMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIID 252

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LCK  ++ EA  L   M+  G  P   ++N++I G     +  +AS   K+
Sbjct: 253 SLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKE 304



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           + H+ G+  + + KI       K G    +  +++LINGLC   R+ EA+E  D ++++G
Sbjct: 151 HLHLVGLGFSVLGKI------FKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               + T+  +++   +     +A+  ++ +     E  +  YS++ID LC+     EA 
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAV 264

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                +   G+ P VVTYN LI G+C  G   +A  L  +M E    PD  +F+ ++   
Sbjct: 265 DLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDAL 324



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 9/139 (6%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G CK   ID A +       KG+  +   +++LI+GLC   R   A ELF KM 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G   +L+TY+ L+   + K G    A+AL + L++ + + N  +  +++ G+C+ G+ 
Sbjct: 517 SHGCPPDLITYSTLL-SGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKL 575

Query: 127 EEARKKLDQLSEKGLVPGV 145
           E+A++    LS + L P V
Sbjct: 576 EDAKELFSSLSIEELQPDV 594


>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
          Length = 558

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H +   +  +C+    D A       + +G    V  +S+++  LC   R+ +A+E+ 
Sbjct: 176 DAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVL 235

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M+  G    + TYN L+       GR   A+ LL+ L+      +I  +++V+DG C+
Sbjct: 236 DAMLGLGCEPTIRTYNSLV-GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---KEKGCFPD 179
           VGR EEA          GL P   TYN L+NG CK+G  ++A  LL++M    +  C PD
Sbjct: 295 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAACLPD 354

Query: 180 STSFNTVIQGFLVKNETDRA 199
            TSF  V+   L   ET  A
Sbjct: 355 KTSFGIVLTALLRAGETSAA 374



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-VAQGITAELVTYNPLI 82
           +++ +D   +    L V  Y+ +++ L        AV LF  M VA    +       L 
Sbjct: 129 RVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMPVAPDAHSFATAVQCLC 188

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                 + +   +AL + + R  +  ++  +S V+  LC+ GR  +A + LD +   G  
Sbjct: 189 RQGAPDEAK---LALDEMVAR-GFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCE 244

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + TYN L+ GLC  G + EA +LL ++K+    PD  +F  V+ GF     T+ A++ 
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 304



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E V++ D +        +  YN ++          +A+AL + +       +   ++ 
Sbjct: 126 VEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 182

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +  LCR G  +EA+  LD++  +G  P V T++ ++  LCK+G + +A ++L  M   G
Sbjct: 183 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLG 242

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P   ++N+++ G       + A   LKK
Sbjct: 243 CEPTIRTYNSLVGGLCYVGRLEEALELLKK 272



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 50/215 (23%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
               Y   + G+C +  ++ A++         +  D++ ++ +++G C   R +EA  +F
Sbjct: 246 TIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIF 305

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL------------------------- 98
              +  G++    TYN L++   ++     A ALL                         
Sbjct: 306 HDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 365

Query: 99  ----------QT---LERDKYELNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKG 140
                     QT   +ER  +E++      +  GLCR          +A +   ++   G
Sbjct: 366 LRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFGKVVASG 425

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             P   TY ++   L + G +  A  LL  M  KG
Sbjct: 426 HEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKG 460



 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLC-----TFNRLKEAVEL 62
           +GI +  + +  E  +A        + G  +D     +L  GLC       + L +A E+
Sbjct: 358 FGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEV 417

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC 121
           F K+VA G      TY  L+     + G   +A+ALL+ + R  Y L    Y+ V+  LC
Sbjct: 418 FGKVVASGHEPVSYTYC-LMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALC 476

Query: 122 RVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             GR  +A + L   +  +  VPG   +  L+  L ++G   +A  +     ++G
Sbjct: 477 DRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMTVYAAAVKRG 531


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 19/202 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L  +  K + ++Y   I  +CK  E+  A        K G+  D  VY+++I+G C   
Sbjct: 302 ELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLG 361

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQTLERDKYEL 108
            +  A +LFD+M  + I  ++VTY  +IH         E +  F+ M L++ LE D+   
Sbjct: 362 NVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM-LVKGLEPDEV-- 418

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               Y+ +IDG C+ G  +EA    +Q+ +KGL P VVTY  L +GLCK G I  A++LL
Sbjct: 419 ---TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELL 475

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +M  KG  P+  ++NT++ G 
Sbjct: 476 HEMSRKGLQPNVYTYNTIVNGL 497



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 111/213 (52%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++    N   Y    +G+CK  EID A        +KG+  +V+ Y++++NGLC    
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGN 502

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +++ V+L ++M   G   + +TY  L+ D + K G  + A  LL+ +   + +  +  ++
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLM-DAYCKMGEMAKAHELLRIMLNKRLQPTLVTFN 561

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++G C  G  E+  + ++ + EKG++P   T+N L+   C K  +    ++   M ++
Sbjct: 562 VLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G  PDS ++N +I+G   K    + + FL K M
Sbjct: 622 GVMPDSNTYNILIKGH-CKARNMKEAWFLHKEM 653



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 9/191 (4%)

Query: 23  CKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+I E+D  +K       KG+  D ++Y+++I  LC    + EA +L   M   G+  + 
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 76  VTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           V Y  +I   + K G  SA   L   + R K   +I  Y+ VI G+C+ G+  EAR+  +
Sbjct: 348 VVYTTVI-SGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++  KGL P  VTY  LI+G CK G + EA  +  QM +KG  P+  ++  +  G     
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 195 ETDRASSFLKK 205
           E D A+  L +
Sbjct: 467 EIDVANELLHE 477



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 2/141 (1%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELN 109
           C F  +K AV++F++    G+    V+ N ++H   +  + R +   L+Q  +R  +  +
Sbjct: 218 CNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFP-D 276

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y +V+ G CR+G  ++  K +D+L  KGL P    YN +I  LCK G ++EA++LL 
Sbjct: 277 VVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLR 336

Query: 170 QMKEKGCFPDSTSFNTVIQGF 190
            M++ G FPD+  + TVI GF
Sbjct: 337 GMRKWGVFPDNVVYTTVISGF 357



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 41/231 (17%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEA------ 59
            R   NF   GI+I     ++  +   + G+C +    + +++ LC   +++EA      
Sbjct: 214 SRLSCNFE--GIKI----AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQ 267

Query: 60  -----------------------------VELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
                                        ++L D++  +G+  +   YN +I    +   
Sbjct: 268 MTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGE 327

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  LL+ + +     +  VY+ VI G C++G    A K  D++  K +VP +VTY  
Sbjct: 328 VVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTS 387

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
           +I+G+CK G ++EA ++  +M  KG  PD  ++  +I G+    E   A S
Sbjct: 388 VIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFS 438



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 42/216 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLI------- 47
           +++ +  + N + Y   +NG+CKI  I+  +K        G   D   Y++L+       
Sbjct: 477 EMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMG 536

Query: 48  ----------------------------NGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
                                       NG C    L++   L + M+ +GI     T+N
Sbjct: 537 EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFN 596

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            L+     K    +   + + +       +   Y+++I G C+    +EA     ++ EK
Sbjct: 597 SLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEK 656

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           G      TY+ LI G  K+   +EA KL  +M++ G
Sbjct: 657 GYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHG 692



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           +R +     + + +NG C         R I+  ++KGI  +   ++SL+   C  N ++ 
Sbjct: 551 KRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRA 610

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
             E++  M  +G+  +  TYN LI  + + +    A  L + +    Y +    Y  +I 
Sbjct: 611 TTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIR 670

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           G  +  ++ EARK  +++ + GLV     Y+I ++
Sbjct: 671 GFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705



 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 20  NGMCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           N M    EI  A+  +G+  D   Y+ LI G C    +KEA  L  +MV +G +    TY
Sbjct: 606 NNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATY 665

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + LI   ++++    A  L + + +       ++Y + +D     G WE
Sbjct: 666 DALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 7/183 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK+ ++  A K       +G+  D F Y+ LI+G C    L+ A+E+  +M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  + V +  LI     +     A   L+ +     + +   Y++VI G C+ G  
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +   K L ++   G VPGVVTYN+L+NGLCK+G +  A+ LL  M   G  PD  ++N +
Sbjct: 487 KTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNIL 546

Query: 187 IQG 189
           ++G
Sbjct: 547 LEG 549



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E R   +   Y + ING+CK  ++D A K       +G+  +   +++LING C   R
Sbjct: 286 MMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGR 345

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
               +E++ +M+ +G+  +++TYN LI+   +      A  L+  + +   + +   Y++
Sbjct: 346 ADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTM 405

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C+ G  E A +   ++ ++G+    V +  LI+G C++G ++EA++ L +M E G
Sbjct: 406 LIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAG 465

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++  VI GF  K +       LK+
Sbjct: 466 IKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK   +D   +         +  DVF YS LINGLC   +L +A +LF +M  +G+
Sbjct: 267 INGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL 326

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               VT+  LI+ +         M + Q + R   + ++  Y+ +I+GLC+VG   EA+K
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + +++++GL P   TY +LI+G CK+G +  A ++  +M ++G   D+ +F  +I GF 
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFC 446

Query: 192 VKNETDRASSFLKK 205
            + +   A   L++
Sbjct: 447 REGQVIEAERTLRE 460



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 9/193 (4%)

Query: 19  INGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING C     D         ++KG+  DV  Y++LINGLC    L+EA +L  +M  +G+
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +  TY  LI D   K+G   SA+ + + + ++  EL+   ++ +I G CR G+  EA 
Sbjct: 397 KPDKFTYTMLI-DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L ++ E G+ P   TY ++I+G CKKG +    KLL +M+  G  P   ++N ++ G 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 191 LVKNETDRASSFL 203
             + +   A+  L
Sbjct: 516 CKQGQMKNANMLL 528



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 10/193 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T++  K +   Y + I+G CK  +++SA       +K+GI LD   +++LI+G C   
Sbjct: 390 EMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREG 449

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA     +M+  GI  +  TY  +IH   +K    +   LL+ ++ D +   +  Y+
Sbjct: 450 QVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYN 509

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++GLC+ G+ + A   LD +   G+VP  +TYNIL+ G CK G   + DKL     EK
Sbjct: 510 VLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKL---QSEK 566

Query: 175 GCFPDSTSFNTVI 187
           G   D  S+ ++I
Sbjct: 567 GLVQDYGSYTSLI 579



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 11/184 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + ++ +CK  +I+ A        K+G+   V  +++LING C    L +   L   M+
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              +  ++ TY+ LI +   K+G+   +    L+  +R     ++  ++ +I+G C  GR
Sbjct: 288 ENRVFPDVFTYSVLI-NGLCKEGQLDDANKLFLEMCDRGLVPNDV-TFTTLINGHCVTGR 345

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +   +   Q+  KG+ P V+TYN LINGLCK G + EA KL+++M ++G  PD  ++  
Sbjct: 346 ADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTM 405

Query: 186 VIQG 189
           +I G
Sbjct: 406 LIDG 409



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 86/156 (55%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  ++ L++ LC  +++ EA  LF ++  +G+   +V++N LI+   +       
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L + +  ++   ++  YS++I+GLC+ G+ ++A K   ++ ++GLVP  VT+  LING
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            C  G      ++  QM  KG  PD  ++NT+I G 
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 77/152 (50%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L + L   N    A   +++++  G   ++  +N L+H   ++     A  L   + +  
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
               +  ++ +I+G C+ G  ++  +    + E  + P V TY++LINGLCK+G + +A+
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           KL ++M ++G  P+  +F T+I G  V    D
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
            V+S L+N         +A++ F  +    +     +   L     +      A A  + 
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +    Y  ++  +++++  LC+  +  EA+    ++ ++GL P VV++N LING CK G 
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           + +  +L   M E   FPD  +++ +I G   + + D A+
Sbjct: 276 LDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 15  YGIRINGMCKIREIDSAIK---KGICLDVFVYSSLINGLCTFNRLKEAVELFDK-MVAQG 70
           YG  ++G+C+I +++ A K   K  C +  + ++LING     +LKEA    ++ M+  G
Sbjct: 326 YGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
              ++ TYN L+H    K+G  S A  L+  + R   E N+  Y+++++GLC+ G  EEA
Sbjct: 386 FQPDIFTYNILMH-GLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++S +GL    V YN LI  LC+K  +  A  LL +M  KGC PD  ++N++I G
Sbjct: 445 GLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYG 504

Query: 190 FLVKNETDRA 199
               +  D A
Sbjct: 505 LCKVDRIDEA 514



 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 42/239 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I  +C+  ++  A+        KG   D+F Y+SLI GLC  +R+ EA  LF
Sbjct: 459 NSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLF 518

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-------TLERDKY---------- 106
             M+  G  A  VTYN LIH    +     A+ L+        TL++  Y          
Sbjct: 519 HNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKV 578

Query: 107 ---ELNIEVY---------------SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
              E  +E+Y               +++I+GLC+VG+ + A + L     +G VP +VTY
Sbjct: 579 GNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTY 638

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           N ++NGLCK G I EA  L  +++ +G  PD+ ++NT I     +   + A SF  + +
Sbjct: 639 NSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGI 697



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID---SAIKKGICLDVFVYSSLINGLCTFNRLKEA 59
           L E  FK    V  I + G C     +     + KG+   VF +  ++  LC FN +  A
Sbjct: 178 LCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSA 237

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             L   M   G     + Y  LIH   +K     A+ LL+ +       +++ ++ VI G
Sbjct: 238 CSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+V +  +A K +D++  +G  P  +TY  L++GLC+ G + EA K+L+++    C P+
Sbjct: 298 LCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP---C-PN 353

Query: 180 STSFNTVIQGFLVKNETDRASSFLKKNM 207
           +   NT+I G+++  +   A SFL + M
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETM 381



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 41/230 (17%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +D+  +        +GI +  +C   E+DSA        K G   +  VY +LI+ L   
Sbjct: 207 YDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQK 266

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEV 112
           N++ EA++L ++M   G   ++ T+N +IH   +      A  L+ + L R  Y  N+  
Sbjct: 267 NQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNM-T 325

Query: 113 YSLVIDGLCRVGRWEEARKKL---------------------DQLSEK-----------G 140
           Y  ++ GLCR+G+  EARK L                      QL E            G
Sbjct: 326 YGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             P + TYNIL++GLCK+G +  A  L+ +M  +GC P+  ++  ++ G 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGL 435



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCK------IRE-IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y I ++G+CK       R+ ++   ++G   +V  Y+ L+NGLC    L+EA 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M A+G+T   V YN LI     K+    A+ LL  +     + ++  Y+ +I GL
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+V R +EA +    +   G V   VTYN LI+ L ++G   +A  L+  M  +GC  D 
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 181 TSFNTVIQGF 190
            ++N +I+ F
Sbjct: 566 ITYNGLIKAF 575



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 39/243 (16%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T+     N  VY   I+ + +  ++  A+K        G   DV  ++ +I+GLC  N
Sbjct: 243 DMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVN 302

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------------------------------D 84
           ++ +A +L D+M+ +G   + +TY  L+H                              +
Sbjct: 303 KIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLIN 362

Query: 85  NWEKQGRF-SAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
            +   G+   A + L +T+    ++ +I  Y++++ GLC+ G    AR  ++++S +G  
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V+TY IL+NGLCK G++ EA  +L +M  +G   +S  +N +I     K +   A + 
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 203 LKK 205
           L +
Sbjct: 483 LSE 485



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 87/164 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + +G  LD   Y+ LI   C    +++ +EL+++M+  G+ A+ ++ N +I+   +
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                +A   L+      +  +I  Y+ V++GLC+VGR +EA    D+L  +G+ P   T
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFT 672

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           YN  I+  CK+GM+ +A     +  E G  P + ++N ++   L
Sbjct: 673 YNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLL 716



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +  + N   Y I +NG+CK   ++ A         +G+ ++  +Y+ LI  LC   
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKE 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A+ L  +M  +G   +L TYN LI+   +      A  L   +  D    N   Y+
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYN 534

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  L R G +++A   ++ +  +G     +TYN LI   CK G I +  +L  QM   
Sbjct: 535 TLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD 594

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G   D+ S N +I G     + D A  FL+
Sbjct: 595 GLGADTISCNIMINGLCKVGKVDNAFEFLR 624



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 54/254 (21%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI------------KKGICLDVFVYSSLIN 48
           FDLT+ R K    +  ++   +CK+ E+   +            +KG C    VY   IN
Sbjct: 65  FDLTKLR-KSRILITPVQ---LCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFIN 120

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER---- 103
            L    + K   +L  +M  +GI      +  +I  ++ K G+   A+ LL  +      
Sbjct: 121 KLGAIGKFKLIDKLLMQMKEEGIVFRESIFM-IIMKHYGKAGQPGQAIRLLLDMRAVYLC 179

Query: 104 ----DKYELNIEV----------------------------YSLVIDGLCRVGRWEEARK 131
                 Y+L +E+                            + +V+  LC     + A  
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L  +++ G VP  + Y  LI+ L +K  + EA KLL +M   GC PD  +FN VI G  
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLC 299

Query: 192 VKNETDRASSFLKK 205
             N+   A+  + +
Sbjct: 300 KVNKIHDATKLVDR 313



 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D   + F  +   Y   +NG+CK+  I  A+        +G+  D F Y++ I+  C   
Sbjct: 625 DAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEG 684

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH 83
            + +A   F + +  G     +T+N L++
Sbjct: 685 MVNDACSFFYRGIENGFVPSNLTWNVLVY 713


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 15  YGIRINGMCKIREIDSAIK---KGICLDVFVYSSLINGLCTFNRLKEAVELFDK-MVAQG 70
           YG  ++G+C+I +++ A K   K  C +  + ++LING     +LKEA    ++ M+  G
Sbjct: 326 YGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
              ++ TYN L+H    K+G  S A  L+  + R   E N+  Y+++++GLC+ G  EEA
Sbjct: 386 FQPDIFTYNILMH-GLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++S +GL    V YN LI  LC+K  +  A  LL +M  KGC PD  ++N++I G
Sbjct: 445 GLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYG 504

Query: 190 FLVKNETDRA 199
               +  D A
Sbjct: 505 LCKVDRIDEA 514



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 42/217 (19%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I  +C+  ++  A+        KG   D+F Y+SLI GLC  +R+ EA  LF  M
Sbjct: 462 IYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNM 521

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ-------TLERDKY------------- 106
           +  G  A  VTYN LIH    +     A+ L+        TL++  Y             
Sbjct: 522 LLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNI 581

Query: 107 ELNIEVY---------------SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           E  +E+Y               +++I+GLC+VG+ + A + L     +G VP +VTYN +
Sbjct: 582 EKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSV 641

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           +NGLCK G I EA  L  +++ +G  PD+ ++NT I 
Sbjct: 642 LNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFIS 678



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID---SAIKKGICLDVFVYSSLINGLCTFNRLKEA 59
           L E  FK    V  I + G C     +     + KG+   VF +  ++  LC FN +  A
Sbjct: 178 LCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSA 237

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             L   M   G     + Y  LIH   +K     A+ LL+ +       +++ ++ VI G
Sbjct: 238 CSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+V +  +A K +D++  +G  P  +TY  L++GLC+ G + EA K+L+++    C P+
Sbjct: 298 LCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP---C-PN 353

Query: 180 STSFNTVIQGFLVKNETDRASSFLKKNM 207
           +   NT+I G+++  +   A SFL + M
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETM 381



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 41/230 (17%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +D+  +        +GI +  +C   E+DSA        K G   +  VY +LI+ L   
Sbjct: 207 YDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQK 266

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEV 112
           N++ EA++L ++M   G   ++ T+N +IH   +      A  L+ + L R  Y  N+  
Sbjct: 267 NQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNM-T 325

Query: 113 YSLVIDGLCRVGRWEEARKKL---------------------DQLSEK-----------G 140
           Y  ++ GLCR+G+  EARK L                      QL E            G
Sbjct: 326 YGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             P + TYNIL++GLCK+G +  A  L+ +M  +GC P+  ++  ++ G 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGL 435



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 8   FKGNFHVYGIRINGMCK------IRE-IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y I ++G+CK       R+ ++   ++G   +V  Y+ L+NGLC    L+EA 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +  +M A+G+T   V YN LI     K+    A+ LL  +     + ++  Y+ +I GL
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+V R +EA +    +   G V   VTYN LI+ L ++G   +A  L+  M  +GC  D 
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 181 TSFNTVIQGF 190
            ++N +I+ F
Sbjct: 566 ITYNGLIKAF 575



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 39/243 (16%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T+     N  VY   I+ + +  ++  A+K        G   DV  ++ +I+GLC  N
Sbjct: 243 DMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVN 302

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH------------------------------D 84
           ++ +A +L D+M+ +G   + +TY  L+H                              +
Sbjct: 303 KIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLIN 362

Query: 85  NWEKQGRF-SAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
            +   G+   A + L +T+    ++ +I  Y++++ GLC+ G    AR  ++++S +G  
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V+TY IL+NGLCK G++ EA  +L +M  +G   +S  +N +I     K +   A + 
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 203 LKK 205
           L +
Sbjct: 483 LSE 485



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 87/164 (53%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  + +G  LD   Y+ LI   C    +++ +EL+++M+  G+ A+ ++ N +I+   +
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                +A   L+      +  +I  Y+ V++GLC+VGR +EA    D+L  +G+ P   T
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFT 672

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           YN  I+  CK+GM+ +A     +  E G  P + ++N ++   L
Sbjct: 673 YNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLL 716



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +  + N   Y I +NG+CK   ++ A         +G+ ++  +Y+ LI  LC   
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKE 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++  A+ L  +M  +G   +L TYN LI+   +      A  L   +  D    N   Y+
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYN 534

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  L R G +++A   ++ +  +G     +TYN LI   CK G I +  +L  QM   
Sbjct: 535 TLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD 594

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G   D+ S N +I G     + D A  FL+
Sbjct: 595 GLGADTISCNIMINGLCKVGKVDNAFEFLR 624



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 54/254 (21%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI------------KKGICLDVFVYSSLIN 48
           FDLT+ R K +  +  ++   +CK+ E+   +            +KG C    VY   IN
Sbjct: 65  FDLTKLR-KSHILITPVQ---LCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFIN 120

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER---- 103
            L    + K   +L  +M  +GI      +  +I  ++ K G+   A+ LL  +      
Sbjct: 121 KLGAIGKFKLIDKLLMQMKEEGIVFRESIFM-IIMKHYGKAGQPGQAIRLLLDMRAVYLC 179

Query: 104 ----DKYELNIEV----------------------------YSLVIDGLCRVGRWEEARK 131
                 Y+L +E+                            + +V+  LC     + A  
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L  +++ G VP  + Y  LI+ L +K  + EA KLL +M   GC PD  +FN VI G  
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLC 299

Query: 192 VKNETDRASSFLKK 205
             N+   A+  + +
Sbjct: 300 KVNKIHDATKLVDR 313


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 15/190 (7%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   ING CK  ++D A +       +G+ +DV ++S+LI GLC   R+ EA+E F  M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL------NIEVYSLVIDGL 120
             +  +  ++TYN +++   +       + L   +E+ +YE       ++  YS VID L
Sbjct: 61  -GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEK-RYEASHGCEPDVISYSTVIDAL 118

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  R ++A +   ++   G  P VVTY+ LI+GLCK   + EA  LL+Q+K +   P +
Sbjct: 119 CKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRA 178

Query: 181 TSFNTVIQGF 190
             +N V+ GF
Sbjct: 179 MYYNAVVNGF 188



 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 117/221 (52%), Gaps = 15/221 (6%)

Query: 1   FDLTEQRFKGNFHV------YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLI 47
           FD  E+R++ +         Y   I+ +CK + +D A +        G   +V  YSSLI
Sbjct: 91  FDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLI 150

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKY 106
           +GLC  +R+ EA  L  ++  + +    + YN ++ + +++QG+ S  + LL  ++   +
Sbjct: 151 DGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVV-NGFKRQGKPSECLELLLHMKEKGF 209

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
            +NI  ++ ++  L +    E+A +  ++L + G  P VVTYN+ ++GLCK G + EA +
Sbjct: 210 GINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYR 269

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +L++M E    PD  +++++I GF      D+A     + M
Sbjct: 270 ILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 310



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y + ++G+CK  ++D A       ++  +  DV  YSS+I+G C   R+ +A +
Sbjct: 245 KPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 304

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F +M+        VT+  L+H   E +    A  + + +    +   ++ Y++++D +C
Sbjct: 305 VFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVC 364

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
                E A +   ++  K   P   TY  LI  LC+   + EA + L  M+     P+  
Sbjct: 365 GADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGA 424

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
             + +++    + E D A S L
Sbjct: 425 ICHALVEVLCKQGEVDEACSVL 446



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ VI+G C+ G+ ++A + LD++ E+G+   V+ ++ LI GLC+KG I EA +    M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETD 197
            E+ C P+  ++NTV+ G    N  D
Sbjct: 61  GEE-CSPNVITYNTVVNGLCKANRID 85



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 28/212 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+    F      Y + ++ +C    ++SA+       +K    D   Y+ LI  LC   
Sbjct: 343 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRAR 402

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL-------ERDKY 106
           R+ EA E  D M A  +       + L+ +   KQG    A ++L  +       E D+ 
Sbjct: 403 RVDEAKEFLDVMEADNVVPNGAICHALV-EVLCKQGEVDEACSVLDNVVEICKAGEPDEA 461

Query: 107 ELNIE------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
              IE             Y  V+  LC + R + A  + ++++ +G  PG+VTY +LI  
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            C   M  +A ++   M   G  P + +  T+
Sbjct: 522 ACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553



 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y  +ING CK G + +A +LL +MKE+G   D    +T+IQG   K   D A
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA 53


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK   ++ A       I +G+     VY+SLI+GLCT N+
Sbjct: 367 MRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 426

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
            + A EL  +M+ +GI    + +N +I D+  K+GR   +  L   + R   + +I  YS
Sbjct: 427 WERAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 485

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   GL P  VTY  LING CK   + +A  L  +M+  
Sbjct: 486 TLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESS 545

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 546 GVSPDIITYNIILQGLFQTRRTAAA 570



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ING CKI  +  A+         G+  D+  Y+ ++ GL    R   A 
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+ ++   G   EL TYN ++H   + +    A+ + Q L     +L    ++++ID L
Sbjct: 572 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 631

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +VGR  EA+      S  GLVP   TY ++   +  +G++ E D+L + M++ GC  DS
Sbjct: 632 LKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 691

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
              N +++  L + E  RA ++L 
Sbjct: 692 GMLNFIVRELLQRGEITRAGTYLS 715



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 10/199 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
            GN  VY   I+G+C   + + A       + +GICL+   ++S+I+  C   R+ E+ +
Sbjct: 409 PGNI-VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 467

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LFD MV  G+  +++TY+ LI D +   G+   AM LL  +     + N   Y  +I+G 
Sbjct: 468 LFDLMVRIGVKPDIITYSTLI-DGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGY 526

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C++ R  +A     ++   G+ P ++TYNI++ GL +      A +L V++ E G   + 
Sbjct: 527 CKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 586

Query: 181 TSFNTVIQGFLVKNETDRA 199
           +++N ++ G      TD A
Sbjct: 587 STYNIILHGLCKNKLTDDA 605



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++R   +   Y   I  +CK + +D A       +K G+  +   Y+S+++G C+  
Sbjct: 221 EMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSG 280

Query: 55  RLKEAVELFDKMVAQGITAE-----LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           + KEA+    K+ + G+  +     + TY  L+     K       ALL  + R+    +
Sbjct: 281 QPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPD 340

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             VY+++I    + G+ +EA     ++ ++GL P  VTY  +I  LCK G + +A     
Sbjct: 341 HYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFE 400

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           QM ++G  P +  +N++I G    N+ +RA   +
Sbjct: 401 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 2/178 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  ++ GI  D +VY+ LI       ++ EA+ +F KM  QG+  + VTY  +I     
Sbjct: 329 LDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVI-GILC 387

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K GR   AM   + +  +       VY+ +I GLC   +WE A + + ++ ++G+    +
Sbjct: 388 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 447

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            +N +I+  CK+G ++E++KL   M   G  PD  +++T+I G+ +  + D A   L 
Sbjct: 448 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLS 505



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  D+  YS+LI+G C   ++ EA++L   MV+ G+    VTY  LI+   + 
Sbjct: 470 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKI 529

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++   +++E G    + TY
Sbjct: 530 SRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 589

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFL 191
           NI+++GLCK  +  +A    ++M +  C  D    + +FN +I   L
Sbjct: 590 NIILHGLCKNKLTDDA----LRMFQNLCLMDLKLEARTFNIMIDALL 632



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  Y+++ING        +A   + +M+ + I+ ++VTY+ +I    + Q    A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-----RKKLDQLSEKGLVPGVVTYN 149
           M +L ++ ++    N   Y+ ++ G C  G+ +EA     + + D +   GL P + TY 
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYC 310

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            L+ G   KG ++    LL  M   G  PD   +N +I  +  + + D A
Sbjct: 311 TLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMV---AQGITAELVTYNPLIHDNWEKQGRFSAM 95
           DVF  + L+ GLC  NR +EA+EL   M      G   ++V+Y  +I+  +++     A 
Sbjct: 157 DVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAY 216

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +    +   +   ++  YS +I  LC+    ++A + L  + + G++P   TY  +++G 
Sbjct: 217 STYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGY 276

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDS-----TSFNTVIQGFLVK 193
           C  G   EA   L +++  G  PD       ++ T++QG+  K
Sbjct: 277 CSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATK 319



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 11/204 (5%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FD 64
           H Y I I   C+   +D       + +KKG  ++   ++ L+ GLC   R  +A+++   
Sbjct: 88  HTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLC 121
           +M       ++ +   L+    ++     A+ L   +   +      ++  Y+ VI+G  
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFF 207

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G   +A     ++ ++ + P VVTY+ +I  LCK   + +A ++L  M + G  P+  
Sbjct: 208 KEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCR 267

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++ +++ G+    +   A  FLKK
Sbjct: 268 TYTSIMHGYCSSGQPKEAIGFLKK 291



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVY 113
           ++A  +FD+++ +G  A +   N  + D   +    +A++    + R    K    +  Y
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTY 90

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
           +++I   CR  R +     L  + +KG     +T+  L+ GLC      +A D +L +M 
Sbjct: 91  AILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           E  C PD  S   +++G   +N +  A
Sbjct: 151 ELSCMPDVFSCTILLKGLCDENRSQEA 177


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 32/234 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  + N + +   ++G+CK   I  A       I  GI  D   YS+L++G C+  
Sbjct: 355 EMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTG 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
           ++ +A  +  +M+ +G +    T N L+H  W K+GR F A  LLQ +    Y+L+    
Sbjct: 415 KVLKANNILHEMMRRGCSPNTYTCNILLHSLW-KEGRIFEAEKLLQKMNERSYDLDNVTC 473

Query: 114 SLVIDGLCRVGRWEEARKKLDQL-------------SEKGLV----------PGVVTYNI 150
           ++VIDGLC+ G+ +EA + ++ +             S  GLV          P ++TY+I
Sbjct: 474 NIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSI 533

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +INGLCK G + EA K  ++M  K   PDS  ++T I  F    +   A   LK
Sbjct: 534 IINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLK 587



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 28  IDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
           +DS+     CL D+  YS +INGLC   RL EA + F +MV + +  + + Y+  IH ++
Sbjct: 515 VDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIH-SF 573

Query: 87  EKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            K G+  SA  +L+ +E+     +++ Y+ +I GL    +  E    LD + EKG+ P +
Sbjct: 574 CKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNI 633

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            TYN +I+ LC+ G I +A  LL +M +KG  P+ +SF  +I+ F
Sbjct: 634 CTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAF 678



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 4/174 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  + +  + LI GLC   R ++A E+FDKM  +G      ++  L+           A
Sbjct: 146 GVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRA 205

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + LL  +     + N  +Y+ +I   CR GR EEA + ++++ E GL P VVT+N  I+ 
Sbjct: 206 LELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISA 265

Query: 155 LCKKGMIMEADKLLVQMK---EKGCF-PDSTSFNTVIQGFLVKNETDRASSFLK 204
           LC  G I+EA ++   M+   E G   P+ T+FN +++GF  +   + A + ++
Sbjct: 266 LCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVE 319



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 110/205 (53%), Gaps = 11/205 (5%)

Query: 14  VYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+  C+        R ++   + G+  DV  ++S I+ LC+  ++ EA  +F  M
Sbjct: 223 IYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDM 282

Query: 67  VAQ---GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
                 G+    +T   L+ + + K+G    A  L+++++R+   + +E Y++ + GL R
Sbjct: 283 QIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVR 342

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+  EA+  L ++ +KG+ P + ++N +++GLCK G+I +A  ++  M   G  PD+ +
Sbjct: 343 NGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVT 402

Query: 183 FNTVIQGFLVKNETDRASSFLKKNM 207
           ++T++ G     +  +A++ L + M
Sbjct: 403 YSTLLHGCCSTGKVLKANNILHEMM 427



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD    + +I+GLC   +L EAVE+ + M   G  A     N  I              L
Sbjct: 468 LDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFI-------------GL 514

Query: 98  LQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           + +    K  L ++  YS++I+GLC+ GR +EARKK  ++  K L P  + Y+  I+  C
Sbjct: 515 VDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFC 574

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           K G I  A ++L  M+++GC     ++N++I G   KN+
Sbjct: 575 KHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQ 613



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING+CK   +D A KK I +       D  +Y + I+  C   ++  A  +   M
Sbjct: 530 TYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDM 589

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G    L TYN LI     K   F    LL  ++      NI  Y+ +I  LC  GR 
Sbjct: 590 EKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRI 649

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++A   LD++ +KG+ P + ++ +LI   CK
Sbjct: 650 KDATSLLDEMLQKGISPNISSFRLLIKAFCK 680



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++  ++ ++ G C    L+EA  L + M   G   EL +YN  +           A   L
Sbjct: 294 NITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLAL 353

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +     E NI  ++ V+DGLC+ G   +AR  +  +   G+ P  VTY+ L++G C  
Sbjct: 354 KEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCST 413

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +++A+ +L +M  +GC P++ + N ++     +     A   L+K
Sbjct: 414 GKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQK 460



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 29/216 (13%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           N  + G+  NG  K+ E   A+K    KGI  +++ ++++++GLC    + +A  +   M
Sbjct: 334 NIWLLGLVRNG--KLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLM 391

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++ GI  + VTY+ L+H          A  +L  + R     N    ++++  L + GR 
Sbjct: 392 ISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRI 451

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--------------- 171
            EA K L +++E+      VT NI+I+GLCK G + EA +++  M               
Sbjct: 452 FEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSF 511

Query: 172 --------KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                     K C PD  +++ +I G       D A
Sbjct: 512 IGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEA 547



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 19  INGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C        RE+ D    KG   + F +  L+ G C       A+EL D M + G+
Sbjct: 158 IAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGV 217

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               V YN LI  ++ ++GR   A  L++ +  D    ++  ++  I  LC  G+  EA 
Sbjct: 218 QPNKVIYNTLI-SSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEAS 276

Query: 131 KKLDQLS---EKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +    +    E GL  P + T+N+++ G CK+GM+ EA  L+  MK  G   +  S+N  
Sbjct: 277 RIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIW 336

Query: 187 IQGFLVKN 194
           + G LV+N
Sbjct: 337 LLG-LVRN 343



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           F +YG+          +D   +KGI  ++  Y+++I+ LC   R+K+A  L D+M+ +GI
Sbjct: 615 FEIYGL----------LDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGI 664

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-------YSLVIDGLCRVG 124
           +  + ++  LI   + K   F  +       ++ +E+ + +       YSL+ + L   G
Sbjct: 665 SPNISSFRLLIK-AFCKASDFGVV-------KEVFEIALSICGHKEALYSLMFNELLIGG 716

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              EA++  D   ++    G   YN LI  LCK  M+  A  +L +M +KG   D  SF 
Sbjct: 717 EVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFM 776

Query: 185 TVIQGFLVKNETDRASSFLKKNM 207
            VI G   + +   A    ++ M
Sbjct: 777 PVIDGLGKRGKKHDADELAERMM 799



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 111 EVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           E Y+L  +I GLC  GR+E+AR+  D++  KG  P   ++ IL+ G C+ G+ M A +LL
Sbjct: 150 ETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELL 209

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M   G  P+   +NT+I  F  +   + A   +++
Sbjct: 210 DGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVER 246



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           + +Y++V++   R  + +        +   G+ P   T N+LI GLC  G   +A ++  
Sbjct: 116 VYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFD 175

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +M  KGC P+  SF  +++G+     + RA   L
Sbjct: 176 KMGVKGCRPNEFSFGILVRGYCRAGLSMRALELL 209


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F+     YG  I+G+ KI  +D A         K I L+V +YSSLI+G     
Sbjct: 612 EMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  + ++++ +G+T  L T+N L+    + +    A+   Q+++  K   N   Y 
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLC+V ++ +A     ++ ++G+ P  ++Y  +I+GL K G I EA  L  + K  
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PDS  +N +I+G    N    A S  ++
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I  +CK   +D A++    L+        + Y+++I G  +  +  EA  L ++ 
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+G    ++ YN ++     K G+   A+ + + +++D    N+  Y+++ID LCR G+
Sbjct: 335 RAKGSIPSVIAYNCIL-TCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGK 392

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A +  D + + GL P V T NI+++ LCK   + EA  +  +M  K C PD  +F +
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452

Query: 186 VIQGF 190
           +I G 
Sbjct: 453 LIDGL 457



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK +++D A      +   +C  D   + SLI+GL    R+ +A +++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVY 470

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+        + Y  LI + +    +     + + +       ++++ +  +D + + 
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 530

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   +++  +  VP   +Y+ILI+GL K G   E  +L   MKE+GC  D+ ++
Sbjct: 531 GEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI GF    + ++A   L++
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEE 612



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D   YS LI+GL       E  ELF  M  QG   +   YN +I D + K G+ + A  L
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCKCGKVNKAYQL 609

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ ++   +E  +  Y  VIDGL ++ R +EA    ++   K +   VV Y+ LI+G  K
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G I EA  +L ++ +KG  P+  ++N+++   +   E + A
Sbjct: 670 VGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA 711



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI      N     + LF +M   G    +  +  LI   + K+GR  SA++LL  
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR-GFAKEGRVDSALSLLDE 228

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++    + +I +Y++ ID   +VG+ + A K   ++   GL P  VTY  +I  LCK   
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA ++   +++    P + ++NT+I G+    + D A S L++
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K+  +D A K         C  +  VY+SLI       R ++  +++  M+ Q  
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNC 513

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +L   N  +   ++        A+ + ++  ++  +   YS++I GL + G   E  +
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + E+G V     YNI+I+G CK G + +A +LL +MK KG  P   ++ +VI G  
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 192 VKNETDRA 199
             +  D A
Sbjct: 634 KIDRLDEA 641



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I     +   D  +       + G    V ++++LI G     R+  A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  + A++V YN  I D++ K G+   A      +E +  + +   Y+ +I 
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCI-DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  + L +   VP    YN +I G    G   EA  LL + + KG  P
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++N ++       + D A
Sbjct: 342 SVIAYNCILTCLRKMGKVDEA 362



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+++ A+    +  +Y+ LIH   +         L  +++     L+   Y++VIDG C
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+  +A + L+++  KG  P VVTY  +I+GL K   + EA  L  + K K    +  
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVV 658

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
            ++++I GF      D A   L++ M
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELM 684



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E +   N   YGI ING+CK+R+ + A        K+G+      Y+++I+GL     
Sbjct: 718 MKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGN 777

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LFD+  A G   +   YN +I           A +L +   R    ++ +   +
Sbjct: 778 IAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVV 837

Query: 116 VIDGLCRVGRWEEA 129
           ++D L +    E+A
Sbjct: 838 LLDTLHKNDCLEQA 851



 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 43/109 (39%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           ++Q + + K+      Y+ +I     V   +       Q+ E G  P V  +  LI G  
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G +  A  LL +MK      D   +N  I  F    + D A  F  +
Sbjct: 215 KEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 9/187 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H++ + I+  CK  +++ A +       + I  D+F Y++LI+  C      EA+ + 
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 255

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G++ ++VTYN LI+  + ++GR    AL    E +    N   Y+ +IDG CRV
Sbjct: 256 DRMERGGVSPDIVTYNSLIY-GFCREGRMRE-ALRLFREINGATPNHVTYTTLIDGYCRV 313

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              EEA +  + +  +GL PGVVTYN ++  LC++G I +A++LL +M E+   PD+ + 
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 373

Query: 184 NTVIQGF 190
           NT+I  +
Sbjct: 374 NTLINAY 380



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   + G+  D+  Y+SLI G C   R++EA+ LF ++   G T   VTY  LI      
Sbjct: 256 DRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRV 313

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E +     +  Y+ ++  LC  G+ ++A + L+++SE+ + P  VT 
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 373

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           N LIN  CK G +  A K+  +M E G  PD  +F  +I GF   +E D A  FL
Sbjct: 374 NTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFL 428



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            Y   I G C+   +  A++      G   +   Y++LI+G C  N L+EA+ L + M  
Sbjct: 269 TYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEV 328

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G+   +VTYN ++    E+     A  LL  +   K E +    + +I+  C++G    
Sbjct: 329 EGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGS 388

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K   ++ E GL P   T+  LI+G CK   +  A + L +M + G  P  ++++ ++ 
Sbjct: 389 AMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448

Query: 189 GF 190
            +
Sbjct: 449 SY 450



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CKI ++ SA+K        G+  D F + +LI+G C  + +  A E   +M+  G 
Sbjct: 377 INAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGF 436

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +    TY+ L+   +++  + + + L   L R    ++I VY  +I  LC++ + E A +
Sbjct: 437 SPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAER 496

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKG-------MIMEADK--LLVQMKEKGCFPDSTS 182
               +  KG+    V Y  L     K G       M+ E DK  L++ +K   CF  S +
Sbjct: 497 IFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYA 556

Query: 183 FNTVIQGFLVKNETDR 198
            +  I G    +  +R
Sbjct: 557 GDGSILGLFWDHVIER 572



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N L          +++ KMV  G+   +  +N LIH   +      A  LL  +E   
Sbjct: 168 LLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRF 227

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              ++  Y+ +I   C+ G   EA    D++   G+ P +VTYN LI G C++G + EA 
Sbjct: 228 IFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREAL 287

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L  ++   G  P+  ++ T+I G+   N+ + A
Sbjct: 288 RLFREI--NGATPNHVTYTTLIDGYCRVNDLEEA 319



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C++ +++ A++       +G+   V  Y+S++  LC   ++K+A  L 
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  + +  + VT N LI+   +     SAM + + +     + +   +  +I G C++
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418

Query: 124 GRWEEARKKL-----------------------------------DQLSEKGLVPGVVTY 148
              + A++ L                                   D+LS KGL   +  Y
Sbjct: 419 HEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             LI  LCK   I  A+++   M+ KG   DS  + ++   +    +   AS  L
Sbjct: 479 RALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDML 533



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL--IHDNWEKQGRF---------- 92
           ++I+ L    + K A  L +++  +   +     N +  IHD+ +   +           
Sbjct: 80  TMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYAN 139

Query: 93  -----SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + + +    ++ ++   +++++ L +        K   ++   G+VP +  
Sbjct: 140 SRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHI 199

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           +N+LI+  CK G + +A++LL +M+ +  FPD  ++NT+I  +  K
Sbjct: 200 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKK 245


>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
 gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
          Length = 553

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 7/174 (4%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C++R  D+A       +  G+  DV  YS+LI+GLC+  ++ EA+ + D M+ +G     
Sbjct: 149 CRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNA 208

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            TY P++H          A  LL T+    +  +   Y+++++ LC+VG +EE    L++
Sbjct: 209 HTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEE 268

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + KG  P V+TY+  ++GLCK G I ++  L+ +M   G  P   + N ++ G
Sbjct: 269 STAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDG 322



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGL-CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
           +D+    G+  D    + L+    C   R   A E+   MVA G+  ++VTY+ LI    
Sbjct: 125 LDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLC 184

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                  A+ +L  +  +  + N   Y+ ++   C  GR  EA++ L+ +   G  P   
Sbjct: 185 SAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTA 244

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN+L+  LCK G   E D LL +   KG  PD  ++++ + G       D++ + + K
Sbjct: 245 TYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDK 303



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 10/195 (5%)

Query: 8   FKGNFHVYGIRINGMCKI---REIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y + +  +CK+    E+D+ ++    KG   DV  YSS ++GLC   R+ ++ 
Sbjct: 239 FAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSF 298

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L DKM++ G+    VT N L+         ++A  LL+      ++ N+  Y+ V+  L
Sbjct: 299 ALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKL 358

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   RW    K    +++KG+ P   T+NI+++ LCK G + +A   L  ++ K      
Sbjct: 359 CDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA---LFLLRSKEFVATV 415

Query: 181 TSFNTVIQGFLVKNE 195
            ++NT+I+   +  E
Sbjct: 416 ITYNTLIRHLSISGE 430



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N H Y   ++  C   +I E    +++ I  G       Y+ L+  LC    
Sbjct: 199 MLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGA 258

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +E   L ++  A+G T +++TY+  + D   K GR   + AL+  +  +  + +    +
Sbjct: 259 FEEVDALLEESTAKGWTPDVITYSSYM-DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLN 317

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DG+CR      A++ L+  +E G    VV YN ++  LC +   +   KL   M +K
Sbjct: 318 ILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKK 377

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+S +FN V+   
Sbjct: 378 GIAPNSWTFNIVVHSL 393



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           D   ++++   L + +R   A+ + D M A G+  +      L+     +  RF +A  +
Sbjct: 101 DAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEV 160

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ +  +    ++  YS +I GLC  G+  EA   LD + E+G  P   TY  +++  C 
Sbjct: 161 VRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCT 220

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G I EA +LL  M   G  P + ++N +++  
Sbjct: 221 GGRIHEAKRLLNTMIASGFAPSTATYNVLVEAL 253



 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLK 57
           D+ ++    N   + I ++ +CK+  +  A+     K     V  Y++LI  L       
Sbjct: 373 DMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGN 432

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSL 115
           E   L  +M+  GI    +TY+ L+ D   ++ +F  +     Q+LE D +      +  
Sbjct: 433 EVCLLLYQMIEGGIAPNDITYS-LVIDCLCREEKFLVALCCFYQSLEDDFFP---SAFLS 488

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           +I GL   G   +    +  +  +G +  V  Y  LI  LCK G
Sbjct: 489 IIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNG 532


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 9/187 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H++ + I+  CK  +++ A +       + I  D+F Y++LI+  C      EA+ + 
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 255

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M   G++ ++VTYN LI+  + ++GR    AL    E +    N   Y+ +IDG CRV
Sbjct: 256 DRMERGGVSPDIVTYNSLIY-GFCREGRMRE-ALRLFREINGATPNHVTYTTLIDGYCRV 313

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              EEA +  + +  +GL PGVVTYN ++  LC++G I +A++LL +M E+   PD+ + 
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 373

Query: 184 NTVIQGF 190
           NT+I  +
Sbjct: 374 NTLINAY 380



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   + G+  D+  Y+SLI G C   R++EA+ LF ++   G T   VTY  LI      
Sbjct: 256 DRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRV 313

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E +     +  Y+ ++  LC  G+ ++A + L+++SE+ + P  VT 
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 373

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           N LIN  CK G +  A K+  +M E G  PD  +F  +I GF   +E D A  FL
Sbjct: 374 NTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFL 428



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            Y   I G C+   +  A++      G   +   Y++LI+G C  N L+EA+ L + M  
Sbjct: 269 TYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEV 328

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G+   +VTYN ++    E+     A  LL  +   K E +    + +I+  C++G    
Sbjct: 329 EGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGS 388

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K   ++ E GL P   T+  LI+G CK   +  A + L +M + G  P  ++++ ++ 
Sbjct: 389 AMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448

Query: 189 GF 190
            +
Sbjct: 449 SY 450



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CKI ++ SA+K        G+  D F + +LI+G C  + +  A E   +M+  G 
Sbjct: 377 INAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGF 436

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +    TY+ L+   +++  + + + L   L R    ++I VY  +I  LC++ + E A +
Sbjct: 437 SPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAER 496

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKG-------MIMEADK--LLVQMKEKGCFPDSTS 182
               +  KG+    V Y  L     K G       M+ E DK  L++ +K   CF  S +
Sbjct: 497 IFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYA 556

Query: 183 FNTVIQGFLVKNETDR 198
            +  I G    +  +R
Sbjct: 557 GDGSILGLFWDHVIER 572



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L+N L          +++ KMV  G+   +  +N LIH   +      A  LL  +E   
Sbjct: 168 LLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRF 227

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              ++  Y+ +I   C+ G   EA    D++   G+ P +VTYN LI G C++G + EA 
Sbjct: 228 IFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREAL 287

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L  ++   G  P+  ++ T+I G+   N+ + A
Sbjct: 288 RLFREI--NGATPNHVTYTTLIDGYCRVNDLEEA 319



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C++ +++ A++       +G+   V  Y+S++  LC   ++K+A  L 
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  + +  + VT N LI+   +     SAM + + +     + +   +  +I G C++
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418

Query: 124 GRWEEARKKL-----------------------------------DQLSEKGLVPGVVTY 148
              + A++ L                                   D+LS KGL   +  Y
Sbjct: 419 HEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             LI  LCK   I  A+++   M+ KG   DS  + ++   +    +   AS  L
Sbjct: 479 RALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDML 533



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL--IHDNWEKQGRF---------- 92
           ++I+ L    + K A  L +++  +   +     N +  IHD+ +   +           
Sbjct: 80  TMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYAN 139

Query: 93  -----SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + + +    ++ ++   +++++ L +        K   ++   G+VP +  
Sbjct: 140 SRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHI 199

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           +N+LI+  CK G + +A++LL +M+ +  FPD  ++NT+I  +  K
Sbjct: 200 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKK 245


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 92/156 (58%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  +V+ Y+ +I G+ +   L++ +    KM  +GI+  +VTYN LI  + +K+  
Sbjct: 199 VRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKV 258

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AMALL+ +       N+  Y+ VI+GLC  GR  E  + ++++  KGLVP  VTYN L
Sbjct: 259 KEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTL 318

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +NG CK+G + +   LL +M  KG  P+  ++ T+I
Sbjct: 319 VNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354



 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+  CK +++  A+         G+  ++  Y+S+INGLC   R+ E  EL 
Sbjct: 241 NVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELV 300

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G+  + VTYN L++   ++      + LL  +       N+  Y+ +I+ +C+ 
Sbjct: 301 EEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKA 360

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A +  DQ+  +GL P   TY  LI+G C+KG++ EA K+L +M   G  P   ++
Sbjct: 361 GNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N ++ G+        A   L+
Sbjct: 421 NALVHGYCFLGRVQEAVGILR 441



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 7/201 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK       +  +   + KG+  +V  Y++LIN +C    L  AVE+FD+M
Sbjct: 314 TYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQM 373

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+     TY  LI    +K     A  +L  +    +  ++  Y+ ++ G C +GR 
Sbjct: 374 RVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRV 433

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA   L  + E+GL P VV+Y+ +I G C++  + +A ++  +M EKG  PD+ +++++
Sbjct: 434 QEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493

Query: 187 IQGFLVKNETDRASSFLKKNM 207
           IQG  ++ +   A    ++ M
Sbjct: 494 IQGLCLQQKLVEAFDLFREMM 514



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 26/225 (11%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y   ++G C +  +  A+       ++G+  DV  YS++I G C    L +A 
Sbjct: 413 FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAF 472

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++ ++MV +G+  + VTY+ LI     +Q    A  L + + R     +   Y+ +I+  
Sbjct: 473 QMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAY 532

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G   +A +  D++ ++G +P  VTY++LINGL KK     A +LL+++  +   PD 
Sbjct: 533 CVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDD 592

Query: 181 TSFNTVIQ---------------GFLVK---NETDRA-SSFLKKN 206
            ++NT+I+               GF +K   NE DR   + L++N
Sbjct: 593 VTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRN 637



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 24/198 (12%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G C+ RE+  A       ++KG+  D   YSSLI GLC   +L EA +LF +M+
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMM 514

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+  + VTY  LI + +   G  S A+ L   + +  +  +   YS++I+GL +  R 
Sbjct: 515 RRGLPPDEVTYTSLI-NAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKART 573

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILI---------------NGLCKKGMIMEADKLLVQM 171
           + A++ L +L  +  VP  VTYN LI                G C KG++ EAD++   M
Sbjct: 574 KVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTM 633

Query: 172 KEKGCFPDSTSFNTVIQG 189
            ++   P++  +N +I G
Sbjct: 634 LQRNHKPNAAIYNLMIHG 651



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 31  AIKKGICLDVFVYSSLINGL-----CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           A + G    V  Y+++++ L            +A  +F  MV  G++  + TYN +I   
Sbjct: 158 ANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGV 217

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             +      +  ++ +E++    N+  Y+ +ID  C+  + +EA   L  ++  G+   +
Sbjct: 218 VSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANL 277

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++YN +INGLC KG + E  +L+ +M+ KG  PD  ++NT++ GF
Sbjct: 278 ISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGF 322



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----------HDNWEKQGR 91
           V+  ++  L     + +A+ L       G    +++YN ++          H +++   R
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                + + + R+    N+  Y+++I G+   G  E+    + ++ ++G+ P VVTYN L
Sbjct: 194 -----VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+  CKK  + EA  LL  M   G   +  S+N+VI G 
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGL 287



 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 76/223 (34%), Gaps = 57/223 (25%)

Query: 14  VYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN  C        +R  D  +++G   D   YS LINGL    R K A  L  K+
Sbjct: 524 TYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF---------------SAMALLQTLERDKYELNIE 111
             +    + VTYN LI +    + +                 A  + +T+ +  ++ N  
Sbjct: 584 FYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAA 643

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL--- 168
           +Y+L+I G  R G   +A     +L         V    L+  L ++GM  E  +LL   
Sbjct: 644 IYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNI 703

Query: 169 --------------------------------VQMKEKGCFPD 179
                                            +M + G  PD
Sbjct: 704 LRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|357155105|ref|XP_003577009.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13800-like [Brachypodium distachyon]
          Length = 821

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 24/208 (11%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  C+  ++ +A       +++G+ +DV VY+ L+NG C    ++EA ELF +M 
Sbjct: 613 YSKLISAYCQTGDMRNARLWFHDMVQRGLPVDVIVYTVLMNGYCKIGLMQEACELFAQMT 672

Query: 68  AQGITAELVTYNPLI--HDNWEKQGRFSAMA--------------LLQTLERDKYELNIE 111
           + GI  +++ Y  L+  H   + Q R+  ++              LL +++  + E ++ 
Sbjct: 673 SLGIKPDIIAYTVLLDGHLKEDLQRRWQGISRDKRSLLLRAKQNRLLSSMKEMEIEPDVP 732

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+++IDG C+    E+AR   D++ +KGL P    Y  LING C +G + +A+ L  +M
Sbjct: 733 CYTVLIDGQCKSDYLEQARGLFDEMLQKGLTPDHYAYTALINGYCSQGEVAKAEDLFQEM 792

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +KG  PD  +F +V+   +++N  D++
Sbjct: 793 VDKGIKPDVLTF-SVLNRRVLRNRQDQS 819



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E   K + H +   I G+C+  +ID A       I++ + ++   ++ +++GLC   
Sbjct: 250 EMIEMGVKPDVHGHSSFIIGLCECGKIDLAYAILQEIIREKVQVEAIAFNVVMDGLCKEM 309

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL+E  +L +  V QG+T ++  Y+ LI    +       +   Q +     E N  + S
Sbjct: 310 RLEEVEKLLENKVRQGLTPDIYGYSYLIRSYCKVGNLLKVLDHYQAMVSHGLEANCHIMS 369

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++    ++G   +  +   +  + GL    V YNI ++  CK G + EA KLL +M   
Sbjct: 370 YLLQCFTKLGMASQVTEYFQKFRDSGLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTV 429

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD   +  +I+G+ +K +   A
Sbjct: 430 GLSPDRIHYTCLIKGYCLKGDIQNA 454



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 84/165 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ +D  +Y+  ++  C    + EAV+L  +M+  G++ + + Y  LI     K    +A
Sbjct: 395 GLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNA 454

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
               + + +   + ++  Y+++  GL + G   E    +  + ++GL P  +TY ++I+G
Sbjct: 455 RQAFEEMLKANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDG 514

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            C+   + EA+ L   ++EKG       +++++ G+L K  TD A
Sbjct: 515 FCRGDNLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNA 559



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 16/217 (7%)

Query: 6   QRFK-GNFHV----YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           Q+F+    H+    Y I ++  CK+  +D A+K        G+  D   Y+ LI G C  
Sbjct: 389 QKFRDSGLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLK 448

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++ A + F++M+   +  ++VTYN L     ++        L+  +E    + N   Y
Sbjct: 449 GDIQNARQAFEEMLKANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTY 508

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            +VIDG CR     EA    + + EKG+    V Y+ ++ G   KG    A  L +++ +
Sbjct: 509 GVVIDGFCRGDNLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNAYVLFLRVAK 568

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKN 206
           +G   D  S + +I        +  A    S+ L+KN
Sbjct: 569 QGKLVDRFSCSKLISDLCRDGNSQGASTVCSTMLEKN 605



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 35/193 (18%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  +   Y  +I+G C  + L EA  LF+ +  +GI    V Y+ ++     K    +
Sbjct: 499 RGLQPNSLTYGVVIDGFCRGDNLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDN 558

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP---------- 143
           A  L   + +    ++    S +I  LCR G  + A      + EK  VP          
Sbjct: 559 AYVLFLRVAKQGKLVDRFSCSKLISDLCRDGNSQGASTVCSTMLEKNDVPDLISYSKLIS 618

Query: 144 -------------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
                                     V+ Y +L+NG CK G++ EA +L  QM   G  P
Sbjct: 619 AYCQTGDMRNARLWFHDMVQRGLPVDVIVYTVLMNGYCKIGLMQEACELFAQMTSLGIKP 678

Query: 179 DSTSFNTVIQGFL 191
           D  ++  ++ G L
Sbjct: 679 DIIAYTVLLDGHL 691



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A +++ +M+  G+  ++  ++  I    E      A A+LQ + R+K ++    +++V+
Sbjct: 243 KAFKVWVEMIEMGVKPDVHGHSSFIIGLCECGKIDLAYAILQEIIREKVQVEAIAFNVVM 302

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DGLC+  R EE  K L+    +GL P +  Y+ LI   CK G +++       M   G  
Sbjct: 303 DGLCKEMRLEEVEKLLENKVRQGLTPDIYGYSYLIRSYCKVGNLLKVLDHYQAMVSHGLE 362

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +    + ++Q F       + + + +K
Sbjct: 363 ANCHIMSYLLQCFTKLGMASQVTEYFQK 390



 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +F  + LI    T    ++ + LF ++   G+   + T N L+   +  +   S + L  
Sbjct: 155 LFATNCLITACTTCCDARDTIGLFGELCRLGVVPPVWTCNILL--KFAAESCDSEIVLSA 212

Query: 100 TLERDKYELNIEVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             E   + L ++ +SL  +   L +  + ++A K   ++ E G+ P V  ++  I GLC+
Sbjct: 213 YDEMKFFRLTLDAHSLRIITRSLFQEKKADKAFKVWVEMIEMGVKPDVHGHSSFIIGLCE 272

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G I  A  +L ++  +    ++ +FN V+ G 
Sbjct: 273 CGKIDLAYAILQEIIREKVQVEAIAFNVVMDGL 305


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            K G+  ++  YSS+I+GLC    +K+A EL ++MV  G    + T+  LIH   +K    
Sbjct: 894  KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTE 953

Query: 93   SAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L L+ +  D Y+ N+  Y+ +I G C+  +   A    +++ E+GLVP   TY  L
Sbjct: 954  RAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTL 1013

Query: 152  INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            I+G CK G   +A +L+  M  +G FP++ ++N+++ G   +   + A   L
Sbjct: 1014 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 1065



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            + EQ    N + Y   I+G CK      A +       +G   +   Y+S+++GLC   R
Sbjct: 998  MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 1057

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +EA +L +      I A+ VTY  LI +  ++     A+  L  + +  ++ +I +Y+ 
Sbjct: 1058 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 1117

Query: 116  VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +I   CR    +++ K  D++ + GL P   TY  +I G C++  +  A K   +M + G
Sbjct: 1118 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 1177

Query: 176  CFPDSTSFNTVIQGFLVKNETDRA 199
            C PDS S+  +I G   ++  D A
Sbjct: 1178 CAPDSISYGALISGLCKESRLDEA 1201



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
            ++ +  +K N + +   I+G+CK    + A +  + L        +V  Y+++I+G C  
Sbjct: 926  EMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKE 985

Query: 54   NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
             +L  A  LF++M  QG+     TY  LI D   K G FS A  L++ +  + +  N   
Sbjct: 986  EKLSRAEMLFERMKEQGLVPNTNTYTTLI-DGHCKAGNFSKAYELMELMSNEGFFPNTCT 1044

Query: 113  YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            Y+ ++DGLC+ GR EEA K L+   +  +    VTY ILI+  CK+  + +A   L +M 
Sbjct: 1045 YNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMF 1104

Query: 173  EKGCFPDSTSFNTVIQGFLVKN 194
            + G  PD   + T+I  F  +N
Sbjct: 1105 KVGFQPDIHLYTTLIAAFCRQN 1126



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
            +T+     N   Y   I+G+CK   +  A       +K G   +V+ ++SLI+GLC    
Sbjct: 892  VTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGW 951

Query: 56   LKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             + A  LF K++ +      + TY  +I    +++    A  L + ++      N   Y+
Sbjct: 952  TERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYT 1011

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +IDG C+ G + +A + ++ +S +G  P   TYN +++GLCK+G   EA KLL    + 
Sbjct: 1012 TLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQN 1071

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                D  ++  +I     + + ++A  FL K
Sbjct: 1072 QIEADGVTYTILISEQCKRADMNQALVFLNK 1102



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 14   VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y I I+  CK  +++ A+       K G   D+ +Y++LI   C  N +K++ +LFD++
Sbjct: 1079 TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 1138

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +  G+     TY  +I     ++    A+   Q +       +   Y  +I GLC+  R 
Sbjct: 1139 IKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRL 1198

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +EAR+  D + +KGL P  VT   L    CK      A  +L ++ +K
Sbjct: 1199 DEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK 1246



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D    +G+  D   Y  +I G C    + EA     +M+ +G   +  T   +I    EK
Sbjct: 820 DEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEK 879

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+     + +     N+  YS +I GLC+ G  ++A + L+++ + G  P V T+
Sbjct: 880 SLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTH 939

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LI+GLCKKG    A +L +++     + P+  ++  +I G+  + +  RA    ++
Sbjct: 940 TSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER 997



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+ L   V + +I        ++ A  +FD+M A+G+  +  TY  +I           
Sbjct: 790 QGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLE 849

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A   +  +    + ++    +L+I   C       A     ++++ GL P ++ Y+ +I+
Sbjct: 850 ADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMIS 909

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLCK+G + +A +LL +M + G  P+  +  ++I G   K  T+RA
Sbjct: 910 GLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 955



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A    D++S +G+ P   TY  +I G C+ G ++EAD+ + +M E+G   D+ +   +
Sbjct: 813 EYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLI 872

Query: 187 IQGFLVKNETDRASSFLKK 205
           I  F  K+  +RA  F  K
Sbjct: 873 ITAFCEKSLVNRAVWFFHK 891



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I G C+ +++  A+K        G   D   Y +LI+GLC  +RL EA +L+D M
Sbjct: 1149 TYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 1208

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +G++   VT   L ++  + +   SAM +L+ L +   +L I     +I  LC
Sbjct: 1209 IDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNK---KLWIRTVHTLIRKLC 1260


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I +NG+C++ ++  A       +++G   DV  Y+SL++GLC    ++EA +L  +M 
Sbjct: 309 YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMS 368

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G    +V Y+ L+           A  +L  +        +  Y++V+ GL + G   
Sbjct: 369 VRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSIS 428

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A   +  L  +G VP VVTYN LI+GLCK   + EA  L  +M  +GCFP+  +  +V+
Sbjct: 429 KAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVV 488

Query: 188 QGFLVKNETDRASSFL 203
            G       D A S +
Sbjct: 489 FGLCRVGRVDDAWSLV 504



 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 110/197 (55%), Gaps = 12/197 (6%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK  +++ A++        G   DV  Y+S+I+ LC   ++ EA E+   M   
Sbjct: 209 ILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM--- 265

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
             + +LVT+N L+ D + K G    A+ +L+ + R+    ++  Y+++++GLCRVG+ + 
Sbjct: 266 SCSPDLVTFNTLL-DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 324

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A   L+++  +G +P V+ Y  L++GLCK G I EA KL+ +M  +GC      +++++ 
Sbjct: 325 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVS 384

Query: 189 GFLVKNETDRASSFLKK 205
           G+       +A   L +
Sbjct: 385 GYCRAGNVHKAREILAE 401



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 5/188 (2%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           RI   C  RE   A   GI  DV   + L++G+C    ++EA+E+ D M   G   +++T
Sbjct: 184 RIREACAFREKMKA--AGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVIT 241

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           YN +IH          A  +L+T+       ++  ++ ++DG C+ G    A + L+++ 
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTMSCSP---DLVTFNTLLDGFCKAGMLPRALEVLEEMC 298

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            + ++P V+TY IL+NGLC+ G +  A  LL ++  +G  PD  ++ +++ G     E +
Sbjct: 299 RENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIE 358

Query: 198 RASSFLKK 205
            A   +K+
Sbjct: 359 EAHKLVKE 366



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 111/212 (52%), Gaps = 12/212 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L E     + +++ + I+G+ K    D A+K         +  ++  Y+++I+GLC    
Sbjct: 88  LDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGN 147

Query: 56  LKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           L++A EL ++M+ +G     ++VTYN LI+  +       A A  + ++      ++   
Sbjct: 148 LEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTC 207

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++ G+C+ G  EEA + LD +   G VP V+TYN +I+ LC  G ++EA ++L  M  
Sbjct: 208 NILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS- 266

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C PD  +FNT++ GF       RA   L++
Sbjct: 267 --CSPDLVTFNTLLDGFCKAGMLPRALEVLEE 296



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  Q +  +   Y   ++G+CK  EI+ A K       +G    V +YSSL++G C   
Sbjct: 331 EIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAG 390

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + +A E+  +MV+  +   L TYN ++     K G  S A++L+  L    Y  ++  Y
Sbjct: 391 NVHKAREILAEMVSINMVPPLFTYN-IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTY 449

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDGLC+  R  EA    D+++ +G  P  VT   ++ GLC+ G + +A  L+V+M  
Sbjct: 450 NTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSR 509

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K   P+   + ++I G    +  D A   L
Sbjct: 510 KRHAPNVVVYTSLIDGLCKSDRMDDACMVL 539



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           DL       N   + I I G CK  +   A++         +  DV++++ LI+GL    
Sbjct: 52  DLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDG 111

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYELNIEV 112
              +AV+LF+ M +  +  E+VTYN +I    +      A  LL+ + R   K   +I  
Sbjct: 112 NPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVT 171

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I+   R  R  EA    +++   G+ P V+T NIL++G+CK G + EA ++L  MK
Sbjct: 172 YNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMK 231

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             G  PD  ++N++I    V  +   A+  LK
Sbjct: 232 LAGPVPDVITYNSIIHALCVAGKVVEAAEILK 263



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 4/194 (2%)

Query: 15  YGIRINGMC---KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y   I+ +C   K+ E    +K   C  D+  +++L++G C    L  A+E+ ++M  + 
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I  +++TY  L++          A  LL+ + R  Y  ++  Y+ ++DGLC+ G  EEA 
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K + ++S +G   GVV Y+ L++G C+ G + +A ++L +M      P   ++N V+ G 
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGL 421

Query: 191 LVKNETDRASSFLK 204
           +      +A S + 
Sbjct: 422 IKDGSISKAVSLIS 435



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I + G+ K   I  A+        +G   DV  Y++LI+GLC  NR++EA +L D+M 
Sbjct: 414 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 473

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++G     VT   ++     + GR   A +L+  + R ++  N+ VY+ +IDGLC+  R 
Sbjct: 474 SRGCFPNDVTLGSVVF-GLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 532

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   LD +  +G+      Y  LI  +   G + EA  +  +M  +G  PD ++  T+
Sbjct: 533 DDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 2/169 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+ L++ L          +++  ++  G +  LVT+  LI  N +      A+  L
Sbjct: 26  DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + L+      ++ +++++I GL + G  ++A K  + +    + P +VTYN +I+GLCK 
Sbjct: 86  RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKS 145

Query: 159 GMIMEADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G + +A +LL +M  KG    PD  ++NT+I  F   +    A +F +K
Sbjct: 146 GNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREK 194



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%)

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E+D Y+ ++  Y+ ++D L + G      K    L   G  P +VT+ ILI G CK G  
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           M A + L  + E    PD   FN +I G       D+A
Sbjct: 79  MRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQA 116


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 2/175 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D   + G   D + Y+ L++G   + +L+ A   F +MV  G+    V+Y  LI D 
Sbjct: 464 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI-DG 522

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             K G+   A++LL+ +E      N+E Y+ VI+GL +  R+ EA K  D++ E+GL+P 
Sbjct: 523 HSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPN 582

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           V+TY  LI+GLC+ G    A K+   M+++ C P+  +++++I G   + + D A
Sbjct: 583 VITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   I+G  K  ++D A+       + G   +V  Y+++INGL   N
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  EA ++ DKMV QG+   ++TY  LI D   + GR   A  +   +E+ K   N+  Y
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLI-DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 621

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I GLC+ G+ +EA    +++SE G  P + TY+ L++GLC+KG   EA++L+  MKE
Sbjct: 622 SSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE 677

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  PD   + +++       E D A
Sbjct: 678 RGFCPDREIYYSLLIAHCKNLEVDHA 703



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 12/212 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +DL+   F      Y   I G C+ R +D A       +K+G   +   YS+LINGLC  
Sbjct: 227 YDLSPDVF-----TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+ EA+++ ++M+ +GI   + TY   I      +    A+ L+  +++     N++ Y
Sbjct: 282 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 341

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL R+G+ E A     ++ ++GLVP  VTYN LIN LC  G    A K+   M+ 
Sbjct: 342 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 401

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   ++ ++N +I+G  +  + ++A    +K
Sbjct: 402 HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 433



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN +C      +A+K        G   +   Y+ +I GLC    +++A+ LF
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G    +VTYN LI+    K    +A  LL  ++ +  E +   Y+ ++ G  + 
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E A     ++ E GL P  V+Y  LI+G  K G +  A  LL +M+E GC P+  S+
Sbjct: 492 GKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI G   +N    A     K
Sbjct: 552 NAVINGLSKENRFSEAEKICDK 573



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI   +  +++LIN L    +++EA  +  ++    ++ ++ TY  LI  +   +  
Sbjct: 190 LNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNL 249

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +   + ++  + N   YS +I+GLC  GR +EA   L+++ EKG+ P V TY + 
Sbjct: 250 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLP 309

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I  LC      EA +L+ +MK++GC P+  ++  +I G 
Sbjct: 310 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK---GICLDVFVYSSLINGLCTFNRLKE 58
           D+ +++   N + Y   I G+C+  + D A +    G    +  YS+L++GLC   R  E
Sbjct: 608 DMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYE 667

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +L   M  +G   +   Y  L+  + +      A+ +  ++E   ++L++ +Y  +I 
Sbjct: 668 AEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALIC 727

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ G+ EEA+   D + EK      + + +L++GL K+G +    KLL  M+ K   P
Sbjct: 728 ALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTP 787

Query: 179 DSTSF 183
           +  ++
Sbjct: 788 NIQTY 792



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 46/229 (20%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING+ K           D  +++G+  +V  Y++LI+GLC   R + A ++F
Sbjct: 547 NVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 606

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +     L TY+ LI+   ++     A    + +     E  ++ YS ++ GLCR 
Sbjct: 607 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRK 662

Query: 124 GRWEEARKKLDQLSEKGLVP-----------------------------------GVVTY 148
           GR+ EA + +  + E+G  P                                    +  Y
Sbjct: 663 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 722

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             LI  LCK G + EA  L   M EK    D   +  ++ G L + E D
Sbjct: 723 RALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELD 771



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    ++  ++L+  L  F  ++ A  L+ +M+  GI   L+T+N LI +   K+G+   
Sbjct: 158 GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI-NILSKKGKVRE 216

Query: 95  MALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             L+ + +  +Y+L+ +V  Y+ +I G CR    + A    D++ ++G  P  VTY+ LI
Sbjct: 217 AELILS-QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLI 275

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           NGLC +G + EA  +L +M EKG  P   ++   I   
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+ F  +  +Y   +   CK  E+D A+K       KG  L + +Y +LI  LC   
Sbjct: 674 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 733

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +++EA  LFD M+ +   A+ + +  L+ D   K+G     M LL  +E   +  NI+ Y
Sbjct: 734 QVEEAQALFDNMLEKEWNADEIVWTVLV-DGLLKEGELDLCMKLLHIMESKNFTPNIQTY 792

Query: 114 SLVIDGLCRVGRWEEARKKLDQL 136
            ++   L R+G+  E+    D+L
Sbjct: 793 VILGRELSRIGKSIESEPLADKL 815


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 17/205 (8%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ I I    K   +D A+       +KG   +V  Y+++I+ LC   R+++AV  F +
Sbjct: 296 HVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQ 355

Query: 66  MVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           MV++G++ +++T+  LIH       W+K  + S   + + +  +   LN      ++D L
Sbjct: 356 MVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNT-----IMDSL 410

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ GR  EA    DQ+   G+ P VV+Y ILI+G C  G + E+ KLL +M   G  PD+
Sbjct: 411 CKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDN 470

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +++ ++ G+      D A +  ++
Sbjct: 471 VTYSALLNGYCKNGRVDDALALYRE 495



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG CK   +D A+        K +  +   Y+ +++GL    R+  A E + K+V
Sbjct: 473 YSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIV 532

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI   + TYN ++    E      A+ + Q L   +++L +  ++++I GL +VGR  
Sbjct: 533 DSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIG 592

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A+     +   GLVP  + Y ++I    ++G++ E+D+L + M++ GC  +S + N ++
Sbjct: 593 DAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIV 652

Query: 188 QGFLVKNETDRASSFLKK 205
           +  L K +  RA ++L K
Sbjct: 653 RKLLEKGDVRRAGTYLTK 670



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKI------REI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I+  CKI      R I DS +++G   D + Y +L++G  T   L +  +L   M+
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI 287

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  E   +N LI    + +    AM     + +  +  N+  Y+ VID LC+ GR E
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A     Q+  +GL P ++T+  LI+GLC  G   + +KL  +M  +G  P++   NT++
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIM 407

Query: 188 QGFLVKNETDRASSFLKK 205
                +     A  F  +
Sbjct: 408 DSLCKEGRVLEAHDFFDQ 425



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++ F  N   Y   I+ +CK   ++ A+        +G+  D+  ++SLI+GLCT  
Sbjct: 320 EMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIG 379

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
             K+  +L  +M+ +GI    +  N ++ D+  K+GR   A      +     + ++  Y
Sbjct: 380 EWKKVEKLSFEMINRGIHPNAIFLNTIM-DSLCKEGRVLEAHDFFDQIIHVGVKPDVVSY 438

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++IDG C  G+ +E+ K L ++   GL P  VTY+ L+NG CK G + +A  L  +M  
Sbjct: 439 TILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFS 498

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K   P++ ++N ++ G         A  F  K
Sbjct: 499 KDVKPNAITYNIILHGLFHAGRVVAAREFYMK 530



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 23/213 (10%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------------------IKK----GICLDVFV 42
           Q F  N   Y   I+G+CK + +D A                   +KK    G+  DV  
Sbjct: 168 QGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVT 227

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YS LI+  C   R  EA  +FD MV +G   +  TY  L+H    K        LL  + 
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI 287

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +D   L   V++++I    +    ++A     ++ +KG  P VVTY  +I+ LCK G + 
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +A     QM  +G  PD  +F ++I G     E
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGE 380



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 20/179 (11%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ +INGL     + +A  LF +M+ QG    +VTYN +I    + Q    A A+L
Sbjct: 138 NVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVL 197

Query: 99  QTLERDKYEL-----------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           Q +  DK +L                 ++  YSL+ID  C++GR  EAR   D +  +G 
Sbjct: 198 QQM-FDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ 256

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET-DRA 199
            P   TY  L++G   KG +++   LL  M + G   +   FN +I+ +  KNET D+A
Sbjct: 257 NPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAY-AKNETLDKA 314



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G+  DV  Y+ LI+G C   ++ E+++L  +MV+ G+  + VTY+ L+ + + K
Sbjct: 424 DQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL-NGYCK 482

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A+AL + +     + N   Y++++ GL   GR   AR+   ++ + G+  G+ T
Sbjct: 483 NGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINT 542

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           YNI++ GLC+   + EA ++   ++ K    +  +FN +I G L
Sbjct: 543 YNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLL 586



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI-------HDNWEKQGRFSAMALLQTLER---DK 105
           L++A+ LFD+++ +  +A +  +N ++         + ++ G   A++L  T+ +   +K
Sbjct: 30  LEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNK 89

Query: 106 YELNIEVYSLVIDGLCRVGRWEEA--------RKKLDQLSEKGL--VPGVVTYNILINGL 155
              +   + ++I   C VG  + A        R  +  +++ G    P V++YN++INGL
Sbjct: 90  LATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGL 149

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            K+G + +A  L  +M  +G  P+  ++N+VI G       D+A + L++
Sbjct: 150 FKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQ 199


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 9/209 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK--IREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRL 56
           D+    F      Y + +   C      ID A++  + I   D   Y++LI+GLC  +R 
Sbjct: 175 DMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIPKPDACSYNTLIDGLCRRSRR 234

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEVYS 114
            EA ELF +MV  GI   +VTY  +I  NW  ++G    A+ +   + R     N+  YS
Sbjct: 235 VEAQELFSEMVENGIAPTVVTYTTII--NWLAREGCLDDALEMFDEMGRRGIAPNVVTYS 292

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC+ GR   A   L++L+++  +P  + Y+ +INGLCK+G++ EA ++L +M+ +
Sbjct: 293 SLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQ 352

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+  F  +I G         A+++L
Sbjct: 353 GRKPDAGLFGKLIVGLCDAGRAVEAANYL 381



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 15  YGIRINGMCK-IREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+  R +++       ++ GI   V  Y+++IN L     L +A+E+FD+M 
Sbjct: 221 YNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMG 280

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +GI   +VTY+ LI D   K GR  SA+ LL+ L ++    N  +YS VI+GLC+ G  
Sbjct: 281 RRGIAPNVVTYSSLI-DGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLL 339

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN-- 184
            EA + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  +++  
Sbjct: 340 REAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTWSLH 399

Query: 185 -----TVIQGFLVKNETDRA 199
                 V+    VK E  RA
Sbjct: 400 VRINVAVVTALCVKGEVGRA 419



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y++++ GL   + L  A  L   M A G      TYN L+  +          A+   L 
Sbjct: 153 YTAVLAGLVAHSHLPLAHSLLADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAV--RLF 210

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R+  + +   Y+ +IDGLCR  R  EA++   ++ E G+ P VVTY  +IN L ++G + 
Sbjct: 211 RNIPKPDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLD 270

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +A ++  +M  +G  P+  +++++I G 
Sbjct: 271 DALEMFDEMGRRGIAPNVVTYSSLIDGL 298


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CK   +  A++       +G   +V+ Y++L+ G C   ++ +A+ L +KM A G+
Sbjct: 153 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGV 212

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + VTYN LI          SA  LL+ +E D    +   Y+ +I+ LC+ GR ++A  
Sbjct: 213 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 272

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D L  +G+ P  VT+N LINGLCK G    A K L +M   GC PD+ ++++ I+   
Sbjct: 273 LFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 332

Query: 192 VKNETDRASSFL 203
               +    SF+
Sbjct: 333 KMKGSQEGLSFI 344



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 11/205 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ + + +   I G C+  ++D A         +G   DV  Y++LI GLC   R+ EAV
Sbjct: 6   WRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAV 65

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ELF +M       ++  Y  L+      +     + +L+ ++   +  +   Y+ V+D  
Sbjct: 66  ELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFR 121

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR  + +EA + L ++ EKGL P VVT   +IN  CK+G + +A ++L  MK +GC P+ 
Sbjct: 122 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 181

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N ++QGF  + +  +A + L K
Sbjct: 182 WTYNALVQGFCNEGKVHKAMTLLNK 206



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   IN +CK    D A         +GI  +   ++SLINGLC   +   A +  +K
Sbjct: 252 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 311

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ G T +  TY+  I    + +G    ++ +  + +   + +   Y++VI  L +   
Sbjct: 312 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 371

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +    +   ++   G  P VVTY   +   C +G + EA+ +L++M + G   D+ ++NT
Sbjct: 372 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 431

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +TD A S LK+
Sbjct: 432 LMDGHASIGQTDHAVSILKQ 451



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E  ++ +   Y   ++  C+ R+   A        +KG+   V   +++IN  C   R
Sbjct: 102 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 161

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ + + M  +G    + TYN L+     +     AM LL  +       +   Y+L
Sbjct: 162 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 221

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C  G  E A + L  +   GL+    TYN LIN LCK G   +A  L   ++ +G
Sbjct: 222 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 281

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++ +FN++I G     + D A  FL+K
Sbjct: 282 IKPNAVTFNSLINGLCKSGKADIAWKFLEK 311



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 9/191 (4%)

Query: 9   KGNFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G C   K+ +  + + K    G+  D   Y+ LI G C    ++ A  
Sbjct: 178 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 237

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L   M   G+ A+  TYN LI +   K GR   A +L  +LE    + N   ++ +I+GL
Sbjct: 238 LLRLMEGDGLIADQYTYNALI-NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ + A K L+++   G  P   TY+  I  LCK     E    + +M +K   P +
Sbjct: 297 CKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPST 356

Query: 181 TSFNTVIQGFL 191
            ++  VI   L
Sbjct: 357 VNYTIVIHKLL 367



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 60/263 (22%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  E R  K N   +   ING+CK  + D A       +  G   D + YSS I  LC 
Sbjct: 274 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 333

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD------------NWEK------------ 88
               +E +    +M+ + +    V Y  +IH              W +            
Sbjct: 334 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 393

Query: 89  ----------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                     +GR + A  +L  + ++   ++   Y+ ++DG   +G+ + A   L Q++
Sbjct: 394 YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT 453

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-----------------MKEKGCFPDS 180
               VP   TY IL+  L +  ++ +   L                    MK+    P+S
Sbjct: 454 SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNS 513

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            +++++++GF     T+ A+S +
Sbjct: 514 GTYSSILEGFSEDGRTEEATSLV 536



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-------- 84
           K G+ +D   Y++L++G  +  +   AV +  +M +        TY  L+          
Sbjct: 419 KNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVE 478

Query: 85  ---------NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
                     W+         L   ++++++  N   YS +++G    GR EEA   +  
Sbjct: 479 DVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSL 538

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E  +      Y  L+   CK    ++A  L+  M + G  P   S+  ++ G + + +
Sbjct: 539 MKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQ 598

Query: 196 TDRA 199
           TD+A
Sbjct: 599 TDKA 602



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L +   LFD M          TY+ ++ + + + GR   A +L+  ++ D   LN ++Y+
Sbjct: 494 LTDVFGLFDVMKKNEFLPNSGTYSSIL-EGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 552

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++   C+  R+ +A   +  + + G +P +++Y  L++GL  +G   +A ++ +  + K
Sbjct: 553 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 612

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
              PD   +  +I G + K  +D
Sbjct: 613 DYSPDEIVWKVIIDGLIKKGHSD 635



 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 63/142 (44%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YSS++ G     R +EA  L   M    I+     Y  L+    + +    A  L+ ++
Sbjct: 515 TYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSM 574

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  +   +  Y  ++ GL   G+ ++A++       K   P  + + ++I+GL KKG  
Sbjct: 575 IQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS 634

Query: 162 MEADKLLVQMKEKGCFPDSTSF 183
             + ++++ ++   C P   ++
Sbjct: 635 DISREMIIMLERMNCRPSHQTY 656


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I   C+   ++ A+       K G+  ++  YSS+I+GLC    +K+A EL ++MV  G 
Sbjct: 286 ITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW 345

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMAL-LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + T+  LIH   +K     A  L L+ +  D Y+ N+  Y+ +I G C+  +   A 
Sbjct: 346 KPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAE 405

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              +++ E+GLVP   TY  LI+G CK G   +A +L+  M  +G FP++ ++N+++ G 
Sbjct: 406 MLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGL 465

Query: 191 LVKNETDRASSFL 203
             +   + A   L
Sbjct: 466 CKRGRAEEAFKLL 478



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   I+G CK      A +       +G   +   Y+S+++GLC   R
Sbjct: 411 MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 470

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +EA +L +      I A+ VTY  LI +  ++     A+  L  + +  ++ +I +Y+ 
Sbjct: 471 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 530

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   CR    +++ K  D++ + GL P   TY  +I G C++  +  A K   +M + G
Sbjct: 531 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 590

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C PDS S+  +I G   ++  D A
Sbjct: 591 CAPDSISYGALISGLCKESRLDEA 614



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++ +  +K N + +   I+G+CK    + A +  + L        +V  Y+++I+G C  
Sbjct: 339 EMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKE 398

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +L  A  LF++M  QG+     TY  LI D   K G FS A  L++ +  + +  N   
Sbjct: 399 EKLSRAEMLFERMKEQGLVPNTNTYTTLI-DGHCKAGNFSKAYELMELMSNEGFFPNTCT 457

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++DGLC+ GR EEA K L+   +  +    VTY ILI+  CK+  + +A   L +M 
Sbjct: 458 YNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMF 517

Query: 173 EKGCFPDSTSFNTVIQGFLVKN 194
           + G  PD   + T+I  F  +N
Sbjct: 518 KVGFQPDIHLYTTLIAAFCRQN 539



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +T+     N   Y   I+G+CK   +  A       +K G   +V+ ++SLI+GLC    
Sbjct: 305 VTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGW 364

Query: 56  LKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + A  LF K++ +      + TY  +I    +++    A  L + ++      N   Y+
Sbjct: 365 TERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYT 424

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G + +A + ++ +S +G  P   TYN +++GLCK+G   EA KLL    + 
Sbjct: 425 TLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQN 484

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               D  ++  +I     + + ++A  FL K
Sbjct: 485 QIEADGVTYTILISEQCKRADMNQALVFLNK 515



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+  CK  +++ A+       K G   D+ +Y++LI   C  N +K++ +LFD++
Sbjct: 492 TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 551

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+     TY  +I     ++    A+   Q +       +   Y  +I GLC+  R 
Sbjct: 552 IKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRL 611

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +EAR+  D + +KGL P  VT   L    CK      A  +L ++ +K
Sbjct: 612 DEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK 659



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D    +G+  D   Y  +I G C    + EA     +M+ +G   +  T   +I    EK
Sbjct: 233 DEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEK 292

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+     + +     N+  YS +I GLC+ G  ++A + L+++ + G  P V T+
Sbjct: 293 SLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTH 352

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LI+GLCKKG    A +L +++     + P+  ++  +I G+  + +  RA    ++
Sbjct: 353 TSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER 410



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+ L   V + +I        ++ A  +FD+M A+G+  +  TY  +I           
Sbjct: 203 QGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLE 262

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A   +  +    + ++    +L+I   C       A     ++++ GL P ++ Y+ +I+
Sbjct: 263 ADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMIS 322

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLCK+G + +A +LL +M + G  P+  +  ++I G   K  T+RA
Sbjct: 323 GLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 368



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A    D++S +G+ P   TY  +I G C+ G ++EAD+ + +M E+G   D+ +   +
Sbjct: 226 EYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLI 285

Query: 187 IQGFLVKNETDRASSFLKK 205
           I  F  K+  +RA  F  K
Sbjct: 286 ITAFCEKSLVNRAVWFFHK 304



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+ +++  A+K        G   D   Y +LI+GLC  +RL EA +L+D M
Sbjct: 562 TYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 621

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +G++   VT   L ++  + +   SAM +L+ L +   +L I     +I  LC
Sbjct: 622 IDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNK---KLWIRTVHTLIRKLC 673


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F+ T+   K + + +GI I G C++  +D   +        G+  +V VY++LI+G C  
Sbjct: 140 FNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKN 199

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++   +LF KM    + A   TY  LI+  ++   +   + L + ++      N+  Y
Sbjct: 200 GDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 259

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G+   A +  D++ E+G+   VVTYN LI GLC++  ++EA++L+ +MK 
Sbjct: 260 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 319

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  S+NT+I G+      D+ASS   +
Sbjct: 320 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 351



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+ R +  A        + G+  ++  Y++LI+G C+  
Sbjct: 281 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 340

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L +A  LF++M + G +  L TYN LI    E +       +++ +E      +   Y+
Sbjct: 341 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 400

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++D L R    E+A +    + + GLV  +  Y +LI+GLC  G + EA KL   + E 
Sbjct: 401 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 460

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P+   +NT+I G+  +  + RA   LK+
Sbjct: 461 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKE 491



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           + + E     N + Y + ING  K+      I+        GI  +V+ Y+S+I   C  
Sbjct: 210 YKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCND 269

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A ELFD+M  +G+   +VTYN LI    +++    A  L+  ++RD    N+  Y
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 329

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C +G  ++A    +Q+   G  P + TYNILI G  +         ++ +M+ 
Sbjct: 330 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 389

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  P   ++  ++   +  +  ++A
Sbjct: 390 RGLSPSKVTYTILMDALVRSDNIEKA 415



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE+++   +G+      Y+ L++ L   + +++A +++  M   G+ A++  Y  LIH 
Sbjct: 384 VREMEA---RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 440

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A  L ++L+    + N  +Y+ +I G C+ G    A + L ++ E G+VP 
Sbjct: 441 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 500

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           V +YN  I  LCK     EA+ LL  M E G  P  + +N +
Sbjct: 501 VASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 17  IRINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +R + + K  +I S+++K G+  D+++Y  LI+GLC    +KEA +LF  +    +    
Sbjct: 407 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 466

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           V YN +I+   ++   + A+ LL+ +  +    N+  Y+  I  LC+  +W EA   L  
Sbjct: 467 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKD 526

Query: 136 LSEKGLVPGVVTYNIL 151
           + E GL P +  +N++
Sbjct: 527 MIELGLKPSISIWNMI 542



 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 15/159 (9%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSA 94
           V ++ ++IN        ++A+   ++M+ +G+     T+N L+      + +EK  R   
Sbjct: 82  VLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR--- 138

Query: 95  MALLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                     K  + ++VYS  ++I G C VG  ++  + L Q+ E GL P VV Y  LI
Sbjct: 139 -----VFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLI 193

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +G CK G I    +L  +M E     +  ++  +I GF 
Sbjct: 194 DGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 232


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 42/219 (19%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I++G  LD+  YS+LI GLC  +R+ EA  LF  M   G   + + Y  L+    +
Sbjct: 214 LEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQ 273

Query: 88  KQGRFSAMALLQTLERDKYELNIEV------YSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
                +A+ L Q +  D     I+       YS++IDGLC+  R +EAR+   ++  +G+
Sbjct: 274 TGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333

Query: 142 VPGVVTYNILING-----------------------------------LCKKGMIMEADK 166
           +P V++Y  LI+G                                   LCKKG ++EA+K
Sbjct: 334 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 393

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS-FLK 204
           LL  + ++GC PD  +  T+++G  +K+   +A+  FLK
Sbjct: 394 LLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLK 432



 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 110/198 (55%), Gaps = 13/198 (6%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I+ +CK  ++  A       I++G   +   Y++L+ GLC  +R+ EA +LF KM 
Sbjct: 556 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 615

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------KYELNIEVYSLVIDGLC 121
             G   ++VTY  L+    +     +A+ L + +  D       ++ ++  YS++IDGLC
Sbjct: 616 KLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLC 675

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR +EAR+   ++   G++P V++Y  LI+G C+ G + +A  L  +M ++G   ++ 
Sbjct: 676 KHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV 735

Query: 182 SFNTVIQGFLVKNETDRA 199
           +++ +I GF  + + D+A
Sbjct: 736 TYSVMIHGFCKEGQIDKA 753



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 24/212 (11%)

Query: 14  VYGIRINGMCKIREIDSAI-----------KKGI-CLDVFV-YSSLINGLCTFNRLKEAV 60
            YG  + G+C+   I++A+           + GI C    + YS +I+GLC   R  EA 
Sbjct: 263 AYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 322

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ELF +M AQGI  ++++Y  LIH       WEK     A  L   +     + ++   S+
Sbjct: 323 ELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEK-----AKCLFNEMLDVGIQPDVTTSSV 377

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC+ G+  EA K L+ + ++G +P VVT   L+ GLC K  I +A +L ++M++ G
Sbjct: 378 LIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLG 437

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           C P+  +  T+++G L ++   + +  L KNM
Sbjct: 438 CMPNVVTCATLMKG-LCQSGNIKIALELHKNM 468



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 48/235 (20%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           G+ I+  CK  ++  A       +++G  LD+  YS+LI GLC  +R+ EA +LF  M  
Sbjct: 14  GVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 73

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV------YSLVIDGLCR 122
            G   + + Y  L+    +      A+ L Q +  D  +  I+       YS++IDGLC+
Sbjct: 74  LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCK 133

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILING---------------------------- 154
             R +EAR+   ++  +G++P V++Y  LI+G                            
Sbjct: 134 DRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTT 193

Query: 155 -------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
                  LCK+G ++EA++LL  M ++GC  D  +++T+I+G  +K+    A+  
Sbjct: 194 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRL 248



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 35/163 (21%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YS +I+GLC   R  EA ELF +M A G+  ++++Y  LIH                   
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH------------------- 526

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                           G CR G+W++A+   +++ + G+ P V T+++LI+ LCK+G ++
Sbjct: 527 ----------------GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 570

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA++LL  M ++GC P++ ++ T+++G  + +    A+    K
Sbjct: 571 EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 613



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 15/211 (7%)

Query: 9   KGNFHVYGIRINGMCKI------REIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I I+G+CK       RE+   +K  G+  DV  Y+SLI+G C   + K+A  
Sbjct: 480 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 539

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGL 120
           LF++MV  G+  ++ T++ LI D   K+G+   A  LL+ + +     N   Y+ ++ GL
Sbjct: 540 LFNEMVDIGVQPDVTTFSVLI-DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 598

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCF-- 177
           C   R  EA +   ++ + G +P VVTY  L+ GLC+ G I  A +L  +M  + G +  
Sbjct: 599 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGT 658

Query: 178 ---PDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  S++ +I G       D A    K+
Sbjct: 659 NFKPDVISYSIIIDGLCKHGREDEARELFKE 689



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 42/191 (21%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + K     Y I I+G+CK R  D A +       +G+  DV  Y+SLI+G C   + ++A
Sbjct: 116 KCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKA 175

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF++M+  GI +++ T                                    S++ID 
Sbjct: 176 KCLFNEMLDVGIRSDVTT-----------------------------------SSMLIDI 200

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ G+  EA + L+ + ++G +  +VTY+ LI GLC K  I EA +L + M++ GC PD
Sbjct: 201 LCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPD 260

Query: 180 STSFNTVIQGF 190
           + ++ T+++G 
Sbjct: 261 AIAYGTLMKGL 271



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++    ++ID  C+ G+  EA + L+ + ++G +  +VTY+ LI GLC K  I EA +L 
Sbjct: 9   DVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLF 68

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
           + MK+ GC PD+ ++ T+++G 
Sbjct: 69  MSMKKLGCRPDAIAYGTLMKGL 90



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 9/104 (8%)

Query: 8   FKGNFHVYGIRINGMCK------IREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAV 60
           FK +   Y I I+G+CK       RE+   +K  G+  +V  Y+SLI+G C   +L++A 
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 719

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
            LF++MV QG+    VTY+ +IH  + K+G+    AL Q +E +
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIH-GFCKEGQIDK-ALFQKMEAN 761



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+  GI  ++ T   LI D + K+G+   A  LL+ + +    L+I  YS +I GLC   
Sbjct: 1   MLHVGIQPDVTTSGVLI-DMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKH 59

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM----KEKG--CFP 178
           R  EA +    + + G  P  + Y  L+ GLC+ G I  A  L  +M     + G  C P
Sbjct: 60  RISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKP 119

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
              S++ +I G       D A    K+
Sbjct: 120 TLVSYSIIIDGLCKDRREDEARELFKE 146


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 11/190 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           + + Y   + G CK   +D A          KG+C DV  Y+++I   C   R ++  EL
Sbjct: 293 DLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMC-DVVSYNTVITAFCKARRTRKGYEL 351

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLC 121
           F++M  +GI  ++VT+N LI D + ++G    +  LL  + + +   +   Y+ V+D LC
Sbjct: 352 FEEMCGKGIRPDMVTFNILI-DAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC 410

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ + A      + E G+ P V++YN L+NG CK   +M+A  L  +M+ KG +PD  
Sbjct: 411 KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEV 470

Query: 182 SFNTVIQGFL 191
           ++  ++ G +
Sbjct: 471 TYKLIVGGLI 480



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 114/215 (53%), Gaps = 9/215 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            D+    F  +   +   +N +C+   +++A++       KG   DV  Y+ +I+ LC  
Sbjct: 108 LDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNA 167

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            R  EA +++ +++ +G++ +      L+       GR   A  L+  + +   ++N  V
Sbjct: 168 KRFDEAAKVWRRLIDKGLSPDYKACVALV-VGLCSGGRVDLAYELVVGVIKGGVKVNSLV 226

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDG CR+GR ++A K    +S  G VP +VTYNIL+N  C++GM+ EA +L+  M+
Sbjct: 227 YNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETME 286

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             G  PD  S+N +++GF   N  DRA   + + M
Sbjct: 287 RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERM 321



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 21  GMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+C    +D A       IK G+ ++  VY++LI+G C   R+ +A+++   M   G   
Sbjct: 198 GLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVP 257

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR-KK 132
           +LVTYN L++   E+     A+ L++T+ER   E ++  Y+ ++ G C+    + A    
Sbjct: 258 DLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMM 317

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           ++++  KG+   VV+YN +I   CK     +  +L  +M  KG  PD  +FN +I  FL 
Sbjct: 318 VERMQTKGMC-DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR 376

Query: 193 KNET 196
           +  T
Sbjct: 377 EGST 380



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 7/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N  VY   I+G C++  +D A+K        G   D+  Y+ L+N  C    + EAV 
Sbjct: 221 KVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVR 280

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L + M   G+  +L +YN L+    +      A  ++    + K   ++  Y+ VI   C
Sbjct: 281 LVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFC 340

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +  R  +  +  +++  KG+ P +VT+NILI+   ++G      KLL +M +    PD  
Sbjct: 341 KARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCI 400

Query: 182 SFNTVIQGFLVKNETDRASSFLK 204
            +  V+       + D A S  +
Sbjct: 401 FYTAVVDHLCKNGKVDVAHSVFR 423



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I +G  L  F YS  I+ LC+       + L                 PLIH        
Sbjct: 73  IPRGFSLLPFTYSRFISALCS---APNNINL-----------------PLIH-------- 104

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
               +LL  ++   +  +I  ++  ++ LCR  R E A +    +  KG  P VV+Y I+
Sbjct: 105 ----SLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTII 160

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+ LC      EA K+  ++ +KG  PD  +   ++ G       D A
Sbjct: 161 IDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLA 208



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 58/128 (45%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   K  +  D   Y+++++ LC   ++  A  +F  MV  G+  ++++YN L++   +
Sbjct: 387 LDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCK 446

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 AM L   ++      +   Y L++ GL R  +   A +  DQ+ E+G       
Sbjct: 447 TSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHL 506

Query: 148 YNILINGL 155
              L+N +
Sbjct: 507 SETLVNAI 514


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CK   +  A++       +G   +V+ Y++L+ G C   ++ +A+ L +KM   G+
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + VTYN LI          SA  LL+ +E D    +   Y+ +I+ LC+ GR ++A  
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 308

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D L  +G+ P  VT+N LINGLCK G +  A K L +M   GC PD+ ++++ I+   
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 368

Query: 192 VKNETDRASSFL 203
               +    SF+
Sbjct: 369 KMKGSQEGLSFI 380



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 48/235 (20%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I  +C+  ++ SA       ++ G   D + ++SLI G C  N++  A +LFDKM
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G   ++V+Y  LI + + + GR   A+ L   +++     ++ +Y+ ++ GLC+ GR
Sbjct: 73  PLRGFAQDVVSYAALI-EGFCETGRIDEAVELFGEMDQP----DMHMYAALVKGLCKAGR 127

Query: 126 -------------------------------WE----EARKKLDQLSEKGLVPGVVTYNI 150
                                          WE    EA + L ++ EKGL P VVT   
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTA 187

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +IN  CK+G + +A ++L  MK +GC P+  ++N ++QGF  + +  +A + L K
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK 242



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   IN +CK    D A         +GI  +   ++SLINGLC   ++  A +  +K
Sbjct: 288 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEK 347

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ G T +  TY+  I    + +G    ++ +  + +   + +   Y++VI  L +   
Sbjct: 348 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 407

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +    +   ++   G  P VVTY   +   C +G + EA+ +L++M + G   D+ ++NT
Sbjct: 408 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 467

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +TD A S LK+
Sbjct: 468 LMDGHASIGQTDHAVSILKQ 487



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+   V   +++IN  C   R+ +A+ + + M  +G    + TYN L+     +    
Sbjct: 175 EKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVH 234

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AMALL  +       +   Y+L+I G C  G  E A + L  +   GL+    TYN LI
Sbjct: 235 KAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALI 294

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N LCK G   +A  L   ++ +G  P++ +FN++I G     + D A  FL+K
Sbjct: 295 NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEK 347



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + H+Y   + G+CK    +  +       + G       Y+++++  C   + KEA E
Sbjct: 109 QPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEE 168

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +  +M  +G+   +VT   +I + + K+GR S A+ +L+ ++    + N+  Y+ ++ G 
Sbjct: 169 MLQEMFEKGLAPCVVTCTAVI-NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 227

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G+  +A   L+++   G+ P  VTYN+LI G C  G I  A +LL  M+  G   D 
Sbjct: 228 CNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQ 287

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N +I        TD+A S  
Sbjct: 288 YTYNALINALCKDGRTDQACSLF 310



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 9/191 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G C   ++  A+         G+  D   Y+ LI G C    ++ A  
Sbjct: 214 KPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFR 273

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L   M   G+ A+  TYN LI +   K GR   A +L  +LE    + N   ++ +I+GL
Sbjct: 274 LLRLMEGDGLIADQYTYNALI-NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 332

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ + A K L+++   G  P   TY+  I  LCK     E    + +M +K   P +
Sbjct: 333 CKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPST 392

Query: 181 TSFNTVIQGFL 191
            ++  VI   L
Sbjct: 393 VNYTIVIHKLL 403



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 60/263 (22%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  E R  K N   +   ING+CK  ++D A       +  G   D + YSS I  LC 
Sbjct: 310 FDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 369

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD------------NWEK------------ 88
               +E +    +M+ + +    V Y  +IH              W +            
Sbjct: 370 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 429

Query: 89  ----------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                     +GR + A  +L  + ++   ++   Y+ ++DG   +G+ + A   L Q++
Sbjct: 430 YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT 489

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-----------------MKEKGCFPDS 180
               VP   TY IL+  L +  ++ +   L                    MK+    P+S
Sbjct: 490 SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNS 549

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            +++++++GF     T+ A+S +
Sbjct: 550 GTYSSILEGFSEDGRTEEATSLV 572



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-------- 84
           K G+ +D   Y++L++G  +  +   AV +  +M +        TY  L+          
Sbjct: 455 KNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVE 514

Query: 85  ---------NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
                     W+         L   ++++++  N   YS +++G    GR EEA   +  
Sbjct: 515 DVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSL 574

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E  +      Y  L+   CK    ++A  L+  M + G  P   S+  ++ G + + +
Sbjct: 575 MKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQ 634

Query: 196 TDRA 199
           TD+A
Sbjct: 635 TDKA 638



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L +   LFD M          TY+ ++ + + + GR   A +L+  ++ D   LN ++Y+
Sbjct: 530 LTDVFGLFDVMKKNEFLPNSGTYSSIL-EGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 588

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++   C+  R+ +A   +  + + G +P +++Y  L++GL  +G   +A ++ +  + K
Sbjct: 589 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 648

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
              PD   +  +I G + K  +D
Sbjct: 649 DYSPDEIVWKVIIDGLIKKGHSD 671



 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 66/147 (44%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YSS++ G     R +EA  L   M    I+     Y  L+    + +    A  L+ ++
Sbjct: 551 TYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSM 610

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  +  ++  Y  ++ GL   G+ ++A++       K   P  + + ++I+GL KKG  
Sbjct: 611 IQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS 670

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             + ++++ ++   C P   ++  + +
Sbjct: 671 DISREMIIMLERMNCRPSHQTYAMLTE 697


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING  K  ++D A       + +GI  +V  Y+S+I  LC    + +A+E+   MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMV 261

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK  D ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ +I
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 188 QGFLVKNETDRA 199
             +  + + D+A
Sbjct: 382 CAYAKQGKVDQA 393



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    +   YG  I  +CK       +R  +  I + +     VY+SLI+ LC F++
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI  + + +N +I D+  K+GR   +  L   + R   + NI  YS
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSII-DSHCKEGRVIESEKLFDLMVRIGVKPNIITYS 518

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L  +   G+ P  VTYN LING CK   + +A  L  +M+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  ++N ++QG      T  A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTFNRLKEAVE 61
           N   Y I + G+C       A++         G C  DV  Y+++ING      L +A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +M+ +GI   +VTYN +I    + Q    AM +L ++ ++    N   Y+ ++ G C
Sbjct: 221 TYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P+ T
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 182 SFNTVIQGFLVK 193
           ++ T++QG+  K
Sbjct: 341 TYGTLLQGYATK 352



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
           N   YGI I   C    +D       + IKKG  +D   ++ L+ GLC   R  +A+++ 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+    ++     A+ LLQ +  D  +   +V  Y+ VI+G 
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ ++G++P VVTYN +I  LCK   + +A ++L  M + G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    +   A  FLKK
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKK 294



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING CKI  ++ A+         G+  D+  Y+ ++ GL    R   A EL+  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   EL TYN ++H   +      A+ + Q L     +L    ++++I  L +VGR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+     LS  GLVP V TY+++   L ++G++ E D L + M+E GC  +S   N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 187 IQGFLVKNETDRASSFL 203
           ++  L + +  RA ++L
Sbjct: 731 VRKLLQRGDITRAGTYL 747



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   +   AI         G+  DV  Y+SL++ LC   R  EA ++F
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M  +G+  E+ TY  L+     K        LL  + R+    N  V+S++I    + 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++A     ++ ++GL P  VTY  +I  LCK G + +A +   QM ++   P +  +
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N++I    + ++ D+A   +
Sbjct: 448 NSLIHSLCIFDKWDKAKELI 467



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  ++ G+  ++  YS+LI+G C   ++ EA +L   MV+ G+  + VTYN LI+   + 
Sbjct: 503 DLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L + +E      +I  Y++++ GL +  R   A++    ++E G    + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
           NI+++GLCK  +  EA    ++M +  C  D    + +FN +I   L     D A
Sbjct: 623 NIILHGLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 59  AVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           AV  +++M   G   +T  L TY  LI  +    GR     A L  + +  + ++   ++
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILI-GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 115 LVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            ++ GLC   R  +A    L ++++ G +P V +YNIL+ GLC +    EA +LL  M +
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 174 KG--CFPDSTSFNTVIQGFLVKNETDRA 199
            G  C PD  S+ TVI GF  + + D+A
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKA 218



 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
           +TE   +     Y I ++G+CK    D A++  + +C     L+   ++ +I  L    R
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             EA +LF  + A G+  ++ TY+ L+ +N  +QG
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTYS-LMAENLIEQG 703


>gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 749

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 9/200 (4%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           NF+ Y + I+G CK  E+       D   + GI   V   +S++ G C  N + EA +LF
Sbjct: 153 NFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLF 212

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + M       ++++ N ++ + + K GR   A++ +  ++ D + LN   Y+ +I+   +
Sbjct: 213 NDMKETSYPPDMISCN-VVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFK 271

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R+ EA     ++ ++G+VP VV Y I+I GL K+G + EA K+L +M + G  PDS  
Sbjct: 272 ARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYC 331

Query: 183 FNTVIQGFLVKNETDRASSF 202
           +N VIQG    +  +RA S 
Sbjct: 332 YNAVIQGLCDVDLLNRAQSL 351



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 13/212 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E  +  +     + +NG CK+  ++ A+         G  L+   Y+SLIN      
Sbjct: 214 DMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFKAR 273

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R +EA   + KM  +GI  ++V Y  +I     K+GR   A  +L+ + +     +   Y
Sbjct: 274 RYREAHACYTKMFKEGIVPDVVLYAIMIR-GLSKEGRVGEAAKMLEEMTQIGLTPDSYCY 332

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI GLC V     A+    ++SE      V T+ ILI  +CK+GM+ EA +L  QM++
Sbjct: 333 NAVIQGLCDVDLLNRAQSLSLEISEHN----VCTHTILICEMCKRGMVAEAQELFNQMEK 388

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P   +FNT+I G       ++A +   K
Sbjct: 389 LGCEPSVVTFNTLINGLCKAKNLEKAKNLFCK 420



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+ +      +L+         ++A+E F +M   GI  +   YN ++ D   ++   
Sbjct: 77  KNGVLVTSDSVRALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLNEKLLE 136

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+AL  T+ +   E N   Y+++IDG C+ G  + A++ LD++   G+VP V++   ++
Sbjct: 137 LALALYTTMLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSIL 196

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G C+   + EA KL   MKE    PD  S N V+ GF      + A SF+
Sbjct: 197 YGCCQANNVDEAHKLFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFV 247



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N + Y   IN   K R    A        K+GI  DV +Y+ +I GL    R+ EA 
Sbjct: 255 FSLNRNSYASLINAFFKARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAA 314

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL--LQTLERDKYELNIEVYSLVID 118
           ++ ++M   G+T +   YN +I      QG      L   Q+L  +  E N+  ++++I 
Sbjct: 315 KMLEEMTQIGLTPDSYCYNAVI------QGLCDVDLLNRAQSLSLEISEHNVCTHTILIC 368

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +C+ G   EA++  +Q+ + G  P VVT+N LINGLCK   + +A  L  +++
Sbjct: 369 EMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKAKNLEKAKNLFCKLE 422



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 18/215 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---DVFVYSSLINGLCTFNRLKE 58
           ++T+     + + Y   I G+C +  ++ A    + +   +V  ++ LI  +C    + E
Sbjct: 319 EMTQIGLTPDSYCYNAVIQGLCDVDLLNRAQSLSLEISEHNVCTHTILICEMCKRGMVAE 378

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE---RDKYELNIEVYSL 115
           A ELF++M   G    +VT+N LI+   + +    A  L   LE   R    L++   S 
Sbjct: 379 AQELFNQMEKLGCEPSVVTFNTLINGLCKAKNLEKAKNLFCKLEVGRRHSLHLSLSQGSG 438

Query: 116 VIDG----------LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            +            +C  G+   A K +  L+ + + P ++TYNIL+N LC    +  A 
Sbjct: 439 QVSDSARLLKKAKEMCEAGQILRAYKLITDLAGE-VKPDIITYNILLNALCMDREVNAAY 497

Query: 166 KLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRA 199
                +++KG   PD+ ++ T+I+G  + +  D A
Sbjct: 498 NFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDEA 532



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 42/209 (20%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGI-CLDVFVYSSLINGLCTFNRLKEAV 60
           K +   Y I +N +C  RE+++A        KKG    D   Y ++I GL   +R  EA 
Sbjct: 474 KPDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDEAF 533

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL---------------LQTLE--- 102
           ++F +M   G    L  Y  L+     K     A  L               + TLE   
Sbjct: 534 KVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVSRAFTLYLEHLKSLPSRDNDSISTLEKYL 593

Query: 103 ---------RDKYELNIEV-------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                    R   EL+ +        Y++++ G C+ G+  EA   L  L E  +     
Sbjct: 594 FGEKLEQVIRGLLELDFKARDFKLAPYTILLIGFCQAGKVSEALIILSVLDEFNIKINAT 653

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +   LI GLCK+  + +A K+ +   EKG
Sbjct: 654 SCVHLIRGLCKEQRLHDAVKIFLYSLEKG 682



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 22/189 (11%)

Query: 19  INGMCKIREIDSAIKKGICLDV----FVYSSLING----------------LCTFNRLKE 58
           ING+CK + ++ A      L+V     ++ SL  G                +C   ++  
Sbjct: 402 INGLCKAKNLEKAKNLFCKLEVGRRHSLHLSLSQGSGQVSDSARLLKKAKEMCEAGQILR 461

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVI 117
           A +L   +  + +  +++TYN L++     +   +A    + L++  Y     V Y  +I
Sbjct: 462 AYKLITDLAGE-VKPDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTII 520

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GL  V R +EA K   ++ + G  P +  Y  L+  LC+K  +  A  L ++  +    
Sbjct: 521 KGLFMVDREDEAFKVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVSRAFTLYLEHLKSLPS 580

Query: 178 PDSTSFNTV 186
            D+ S +T+
Sbjct: 581 RDNDSISTL 589


>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
 gi|194689480|gb|ACF78824.1| unknown [Zea mays]
          Length = 558

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H +   +  +C+    D A       + +G    V  +S+++  LC   R+ +A+E+ 
Sbjct: 176 DAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVL 235

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M+  G    + TYN L+       GR   A+ LL+ L+      +I  +++V+DG C+
Sbjct: 236 DAMLGLGCEPTIRTYNSLV-GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---KEKGCFPD 179
           VGR EEA          GL P   TYN L+NG CK+G  ++A  LL++M    +  C PD
Sbjct: 295 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 354

Query: 180 STSFNTVIQGFLVKNETDRA 199
            TSF  V+   L   ET  A
Sbjct: 355 KTSFGIVLTALLRAGETSAA 374



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-VAQGITAELVTYNPLI 82
           +++ +D   +    L V  Y+ +++ L        AV LF  M VA    +       L 
Sbjct: 129 RVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMPVAPDAHSFATAVQCLC 188

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                 + +   +AL + + R  +  ++  +S V+  LC+ GR  +A + LD +   G  
Sbjct: 189 RQGAPDEAK---LALDEMVAR-GFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCE 244

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + TYN L+ GLC  G + EA +LL ++K+    PD  +F  V+ GF     T+ A++ 
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 304



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E V++ D +        +  YN ++          +A+AL + +       +   ++ 
Sbjct: 126 VEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 182

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +  LCR G  +EA+  LD++  +G  P V T++ ++  LCK+G + +A ++L  M   G
Sbjct: 183 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLG 242

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P   ++N+++ G       + A   LKK
Sbjct: 243 CEPTIRTYNSLVGGLCYVGRLEEALELLKK 272



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 50/215 (23%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
               Y   + G+C +  ++ A++         +  D++ ++ +++G C   R +EA  +F
Sbjct: 246 TIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIF 305

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL------------------------- 98
              +  G++    TYN L++ + ++     A ALL                         
Sbjct: 306 HDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 365

Query: 99  ----------QT---LERDKYELNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKG 140
                     QT   +ER  +E++      +  GLCR          +A +   ++   G
Sbjct: 366 LRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFGKVVASG 425

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             P   TY ++   L + G +  A  LL  M  KG
Sbjct: 426 HEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKG 460



 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLC-----TFNRLKEAVEL 62
           +GI +  + +  E  +A        + G  +D     +L  GLC       + L +A E+
Sbjct: 358 FGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEV 417

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC 121
           F K+VA G      TY  L+     + G   +A+ALL+ + R  Y L    Y+ V+  LC
Sbjct: 418 FGKVVASGHEPVSYTYC-LMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALC 476

Query: 122 RVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             GR  +A + L   +  +  VPG   +  L+  L ++G   +A  +     ++G
Sbjct: 477 DRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMTVYAAAVKRG 531


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 10/212 (4%)

Query: 1   FDLTEQRFKG-NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           F L     +G N   YG  ++G+CK   +       D+ +  G   +  VY ++I+G C 
Sbjct: 604 FKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCK 663

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             +L++A E+F KM  +G +  L TY+  I D   K  R    + +L  +  +    N+ 
Sbjct: 664 IGKLQDAQEVFTKMSERGYSPNLYTYSSFI-DCLFKDNRLDLVLKVLSKMLENSCTPNVV 722

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           +Y+ ++DGLC++G+ +EA K + ++ EKG  P VVTY  +I+G  K G I +  +L   M
Sbjct: 723 IYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDM 782

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             KGC P+  ++  +I         D A   L
Sbjct: 783 CSKGCAPNFITYRVLINHCCSNGLLDEAYKLL 814



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 95/240 (39%), Gaps = 93/240 (38%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA---------------IKKGICLD--------VFVYSS 45
           K N   Y   I+G CK  +I+ A               + K   LD        V  Y +
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGA 621

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L++GLC  NR+KEA EL D M+A G                                   
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGC---------------------------------- 647

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL------------------------ 141
            E N  VY  VIDG C++G+ ++A++   ++SE+G                         
Sbjct: 648 -EPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVL 706

Query: 142 -----------VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                       P VV Y  +++GLCK G   EA KL+++M+EKGC P+  ++  +I GF
Sbjct: 707 KVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGF 766



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 12  FHVYGIRINGMCKIREIDSA-------------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           + VY I I  +C   E  S+             +  G+ L+    S+    LC   +  +
Sbjct: 384 YLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQ 443

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++  +M+ +G   +  TY+ +I    +      A +L + ++R+    ++  Y+++ID
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILID 503

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G  ++ARK  D++  KG  P VVTY  LI+   K   +  AD+L   M  +GC P
Sbjct: 504 SFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKP 563

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  ++  +I G     + ++A
Sbjct: 564 NVVTYTALIDGHCKAGQIEKA 584



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ GLC    +EEA   L ++     +P VVTY IL++G  +KG +    ++L  M 
Sbjct: 282 YNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMI 341

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +GC+P+   FN++I  +    +   A    KK
Sbjct: 342 TEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKK 374



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   ++G+CKI + D A K       KG   +V  Y+++I+G     +
Sbjct: 712 MLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGK 771

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++ +ELF  M ++G     +TY  LI+          A  LL  +++  +  +I  +  
Sbjct: 772 IEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRK 831

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G  +   +  +   LD+LSE   VP    Y ILI+   K G +  A  LL ++    
Sbjct: 832 IIEGFSQ--EFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSS- 888

Query: 176 CFPDSTSFNTVIQGFLVKN 194
             P     N  +   L++N
Sbjct: 889 --PSHAVSNKYLYASLIEN 905



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 22  MCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           +C   + D A K       KG   D   YS +I  LC  +++++A  LF++M   GI   
Sbjct: 435 LCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPS 494

Query: 75  LVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           + TY  LI D++ K G    A      +       N+  Y+ +I    +  +   A +  
Sbjct: 495 VYTYTILI-DSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + +  +G  P VVTY  LI+G CK G I +A ++  +M+
Sbjct: 554 EMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMR 592



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D +  S     LC   + +EA +L D+  A+    + V YN ++    E      AM +
Sbjct: 244 MDRYTLSCFAYSLCKGGKCREAFDLIDE--AEDFVPDTVFYNRMVSGLCEASLFEEAMDI 301

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +       N+  Y +++ G  R G+    ++ L  +  +G  P    +N LI+  CK
Sbjct: 302 LHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCK 361

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                 A KL  +M + GC P    +N  I G +  NE   +S  L
Sbjct: 362 SRDYSYAYKLFKKMIKCGCQPGYLVYNIFI-GSVCSNEEQPSSDIL 406



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 42/194 (21%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+ +++GLC  +  +EA+++  +M +      +VTY  L+     K        +L
Sbjct: 278 DTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRIL 337

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING---- 154
             +  +    N E+++ +I   C+   +  A K   ++ + G  PG + YNI I      
Sbjct: 338 SMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSN 397

Query: 155 -------------------------------------LCKKGMIMEADKLLVQMKEKGCF 177
                                                LC  G   +A K++ +M  KG  
Sbjct: 398 EEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFV 457

Query: 178 PDSTSFNTVIQGFL 191
           PD ++++ VI GFL
Sbjct: 458 PDDSTYSKVI-GFL 470



 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            +  L  ++ D +EL   + + ++   CR G W  A ++L +L + G  P   TYN LI 
Sbjct: 160 PLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQ 219

Query: 154 GLCKKGMIMEADKL 167
                 + + ADKL
Sbjct: 220 ------VFLRADKL 227


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           +++E+    +   Y I ING C+   +       D  I KGI      Y+SLI  L    
Sbjct: 356 EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRG 415

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+K+A +LF+K+V +GI  +L+ +N LI  +        A A+L+ +++ K   +   ++
Sbjct: 416 RMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFN 475

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR G+ E AR+ ++++  +G+ P  ++YN LI+G  K+G + +A ++  +M   
Sbjct: 476 TLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSI 535

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P   ++N +IQG     E D A   LK+
Sbjct: 536 GFNPTLLTYNALIQGLCKNEEGDHAEQLLKE 566



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   I+G C    ++ A         +G+  D + Y S I+G+C   +L+EA  
Sbjct: 223 KPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASG 282

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +KM   G+    VTYN LI     K     A      + R+     +  Y+++I  L 
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALF 342

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC------------------------- 156
              + +EA   + ++SEKGLVP  VTYNILING C                         
Sbjct: 343 LDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRV 402

Query: 157 ----------KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                     K+G + +AD L  ++  KG FPD   FN +I G       DRA + LK+
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKE 461



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++   R K +   + I IN +CK  ++  A +        GI  +V  Y+++I+G C+  
Sbjct: 181 EMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRG 240

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R++ A  +FD M  +G+  +  TY   I     K+G+   A  +L+ ++          Y
Sbjct: 241 RVEGARMIFDLMKCRGVKPDSYTYGSFI-SGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C  G  E A    D++  +GL+P V TYN+LI+ L     + EAD ++ +M E
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  PDS ++N +I G+
Sbjct: 360 KGLVPDSVTYNILINGY 376



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 4/190 (2%)

Query: 20  NGMCKIREI--DSAIKKGIC-LDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +G+  IRE+  +  + +G+  +  +V Y  LI   C   R  +A E FD M  +G+   +
Sbjct: 97  SGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHV 156

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
              N ++    +      A  L   + R + + ++  ++++I+ LC+ G+ ++A++ +  
Sbjct: 157 HACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGL 216

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +   G+ P VVTYN +I+G C +G +  A  +   MK +G  PDS ++ + I G   + +
Sbjct: 217 MEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGK 276

Query: 196 TDRASSFLKK 205
            + AS  L+K
Sbjct: 277 LEEASGMLEK 286



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C    +D A        +  +  D   +++L+ G C   +++ A EL ++M ++GI
Sbjct: 443 IDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + ++YN LI   + K+G    A  +   +    +   +  Y+ +I GLC+    + A 
Sbjct: 503 KPDHISYNTLI-SGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAE 561

Query: 131 KKLDQLSEKGLVPGVVTYNILINGL 155
           + L ++  KG+ P   TY  LI G+
Sbjct: 562 QLLKEMISKGITPNDNTYLSLIEGI 586


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F+ T+   K + + +GI I G C++  +D   +        G+  +V VY++LI+G C  
Sbjct: 153 FNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKN 212

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++   +LF KM    + A   TY  LI+  ++   +   + L + ++      N+  Y
Sbjct: 213 GDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 272

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G+   A +  D++ E+G+   VVTYN LI GLC++  ++EA++L+ +MK 
Sbjct: 273 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 332

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  S+NT+I G+      D+ASS   +
Sbjct: 333 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 364



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 53/253 (20%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+ R +  A        + G+  ++  Y++LI+G C+  
Sbjct: 294 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 353

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI-------------------------------- 82
            L +A  LF++M + G +  L TYN LI                                
Sbjct: 354 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 413

Query: 83  --------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
                    DN EK     A  +  ++E+     +I +Y ++I GLC VG  +EA K   
Sbjct: 414 ILMDALVRSDNIEK-----AFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 468

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            L E  L P  V YN +I G CK+G    A +LL +M E G  P+  S+N+ IQ  L K+
Sbjct: 469 SLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQ-ILCKD 527

Query: 195 ETDRASSFLKKNM 207
           E    +  L K+M
Sbjct: 528 EKWTEAEVLLKDM 540



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           + + E     N + Y + ING  K+      I+        GI  +V+ Y+S+I   C  
Sbjct: 223 YKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCND 282

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +L  A ELFD+M  +G+   +VTYN LI    +++    A  L+  ++RD    N+  Y
Sbjct: 283 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 342

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG C +G  ++A    +Q+   G  P + TYNILI G  +         ++ +M+ 
Sbjct: 343 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 402

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  P   ++  ++   +  +  ++A
Sbjct: 403 RGLSPSKVTYTILMDALVRSDNIEKA 428



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE+++   +G+      Y+ L++ L   + +++A +++  M   G+ A++  Y  LIH 
Sbjct: 397 VREMEA---RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 453

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A  L ++L+    + N  +Y+ +I G C+ G    A + L ++ E G+VP 
Sbjct: 454 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 513

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           V +YN  I  LCK     EA+ LL  M E G  P  + +N +
Sbjct: 514 VASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 17  IRINGMCKIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +R + + K  +I S+++K G+  D+++Y  LI+GLC    +KEA +LF  +    +    
Sbjct: 420 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 479

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           V YN +I+   ++   + A+ LL+ +  +    N+  Y+  I  LC+  +W EA   L  
Sbjct: 480 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKD 539

Query: 136 LSEKGLVPGVVTYNIL 151
           + E GL P +  +N++
Sbjct: 540 MIELGLKPSISIWNMI 555



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSA 94
           V ++ ++IN        ++A+  F++M+ +G+     T+N L+      + +EK  R   
Sbjct: 95  VLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR--- 151

Query: 95  MALLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                     K  + ++VYS  ++I G C VG  ++  + L Q+ E GL P VV Y  LI
Sbjct: 152 -----VFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLI 206

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +G CK G I    +L  +M E     +  ++  +I GF 
Sbjct: 207 DGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 245


>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
 gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
          Length = 522

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 15/196 (7%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDK 65
           VY   I+G+ K + +D A++       + +C  +   Y +L++GLC   R+ EA ELF +
Sbjct: 38  VYNSLIDGLVKAKLVDKALEIFSRDMDEALCQPNSHTYGALVSGLCKAGRIAEACELFQQ 97

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +  T  +V Y  +I D   K  +F  A + L+ +E      +I  YS  IDGLC VG
Sbjct: 98  MIERRYTPHVVLYTTVI-DGLCKARQFDKACSYLEKMESP----DIVTYSAFIDGLCNVG 152

Query: 125 RWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           + + A + L Q+ E+G   P VV Y I I GLCK G +  A +L  +M++ GC P++ ++
Sbjct: 153 KVDYAFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTY 212

Query: 184 NTVIQGFLVKNETDRA 199
           N++++        D A
Sbjct: 213 NSLMRALAWHKSVDAA 228



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ E   + N H YG  ++G+CK   I  A       I++     V +Y+++I+GLC   
Sbjct: 62  DMDEALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKAR 121

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEV 112
           +  +A    +KM     + ++VTY+  I D     G+  ++   L Q  ER     ++ +
Sbjct: 122 QFDKACSYLEKME----SPDIVTYSAFI-DGLCNVGKVDYAFELLKQIQERGNARPDVVL 176

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++ I GLC+ G+ + A +   ++ + G  P  VTYN L+  L     +  A +L  +M 
Sbjct: 177 YTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEMI 236

Query: 173 EKGCFPDSTSFNTV 186
            KGC PD  ++ TV
Sbjct: 237 RKGCEPDGATYPTV 250



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 76/151 (50%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
             V+SSL+  LC   RL++A EL  KMV +G++  + +Y  LI  +++      +  L +
Sbjct: 359 AMVHSSLVTKLCRRGRLEDAYELHQKMVKRGLSPTIKSYKLLIKYHFKAGKAGVSRQLFE 418

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +++       + Y ++++G C+ G  +EA   L++   +   P   +Y  LI  LC+ G
Sbjct: 419 QMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELG 478

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              EA  +L +M   G  P   S+N V Q +
Sbjct: 479 RTEEAHHILQRMVSLGHRPLLLSYNAVFQAY 509



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGV 145
           K G+ S A    Q L +    L++ VY+ +IDGL +    ++A +   +  ++ L  P  
Sbjct: 13  KAGKISEATDHYQRLRKSLRFLSVVVYNSLIDGLVKAKLVDKALEIFSRDMDEALCQPNS 72

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            TY  L++GLCK G I EA +L  QM E+   P    + TVI G     + D+A S+L+K
Sbjct: 73  HTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDKACSYLEK 132



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 4/181 (2%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDN 85
           + A+++G  + V  Y  +I GL    ++ +A+  F KMV  G   ++ ++   +  +   
Sbjct: 309 EQALERGCEIHVLTYYEIIRGLVRLGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSLVTK 368

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             ++GR   A  L Q + +      I+ Y L+I    + G+   +R+  +Q+ +      
Sbjct: 369 LCRRGRLEDAYELHQKMVKRGLSPTIKSYKLLIKYHFKAGKAGVSRQLFEQMQKVDSPQT 428

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             TY +L+ G C+ GM+ EA   L +   +   P   S+  +I+       T+ A   L+
Sbjct: 429 RDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQ 488

Query: 205 K 205
           +
Sbjct: 489 R 489



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 94/185 (50%), Gaps = 6/185 (3%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +   +++G  ++  ++ +L+  L T  +LK ++ + ++ + +G    ++TY  +I     
Sbjct: 273 VKDMVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIR-GLV 331

Query: 88  KQGRFS-AMALLQTL-ERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + G+ S A+A  Q + E  K  L+ +   V+S ++  LCR GR E+A +   ++ ++GL 
Sbjct: 332 RLGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSLVTKLCRRGRLEDAYELHQKMVKRGLS 391

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + +Y +LI    K G    + +L  QM++        ++  +++G+      D A   
Sbjct: 392 PTIKSYKLLIKYHFKAGKAGVSRQLFEQMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYGA 451

Query: 203 LKKNM 207
           L++ +
Sbjct: 452 LEETV 456



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 45/248 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREID-----------------SAIKKGIC-------- 37
           + E+R+  +  +Y   I+G+CK R+ D                 SA   G+C        
Sbjct: 98  MIERRYTPHVVLYTTVIDGLCKARQFDKACSYLEKMESPDIVTYSAFIDGLCNVGKVDYA 157

Query: 38  --------------LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI- 82
                          DV +Y+  I GLC   ++  AVELF KM   G     VTYN L+ 
Sbjct: 158 FELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMR 217

Query: 83  ----HDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
               H + +   R     + +  E D      + +Y+ ++    R  R  E  + +  + 
Sbjct: 218 ALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDELVKDMV 277

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            +G       ++ L+  L   G +  +  +  Q  E+GC     ++  +I+G +   +  
Sbjct: 278 RRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIRGLVRLGKVS 337

Query: 198 RASSFLKK 205
           +A +  +K
Sbjct: 338 KALAQFQK 345


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 10/206 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I +  +C   ++D A+       ++ +  D   YS+L+ GL   +RL  
Sbjct: 152 RRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDH 211

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVYSLV 116
           A++L D+M   G+  ++V YN L+   + K G F   M +   L +D     N+  Y+++
Sbjct: 212 ALDLLDEMPRSGVQPDVVCYNALLGGCF-KAGEFEKVMRVWDKLVKDPGARPNLATYNVM 270

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC+ GR++E  +  +++    L P V+TY ILI+GLC+ G +  A ++  ++ + G 
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSF 202
             D+  +N++++GF        A  F
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKF 356



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 8/190 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N H+Y   I+G C++     A++        G    V  Y++LI+GLC   + +EA  
Sbjct: 471 KPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASS 530

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +MV  G T ++ TY  LI   +  +    A+++ + +     ++++ +++++I GLC
Sbjct: 531 VAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590

Query: 122 RVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
             G+ +EA      + E K   P +VTYN L++GL + G I +A  L   + E G  PD 
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650

Query: 181 TSFNTVIQGF 190
            S+NT I+G 
Sbjct: 651 ISYNTRIKGL 660



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 42/199 (21%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +G  I+G+C+           + A   G  LDVF YSS+INGLC   RL +AV++++KM
Sbjct: 406 TFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM 465

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                                              ++D  + N  +Y+ +I G C+V R 
Sbjct: 466 -----------------------------------DKDGCKPNSHIYNALISGFCQVYRT 490

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +   ++++ G  P V+TYN LI+GLCK     EA  +  +M E G  PD T++ ++
Sbjct: 491 SDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSL 550

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G     + D A S  K+
Sbjct: 551 IRGLFSDKKIDDALSIWKQ 569



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 42/234 (17%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK- 65
            YGI I+G+C+  ++D A       IK G+ +D  +Y+SL+ G C   R++EA + +D  
Sbjct: 301 TYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSA 360

Query: 66  ----------------------MVAQGI------------TAELVTYNPLIHDNWEKQGR 91
                                 MV + I              + VT+  LIH   +    
Sbjct: 361 GFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFA 420

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  + +       +L++  YS +I+GLC VGR  +A K  +++ + G  P    YN L
Sbjct: 421 NKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNAL 480

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G C+     +A ++  +M + GC P   ++NT+I G     +   ASS  ++
Sbjct: 481 ISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVARE 534



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E  F  +   YG  I G+   ++ID A+        KG+ +DV +++ LI+GLC+  
Sbjct: 534 EMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAG 593

Query: 55  RLKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           ++ EA+ +F  M   +     LVTYN L+   +E      A  L  ++  D  E +I  Y
Sbjct: 594 KVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISY 653

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +  I GLC   R  E  + LD++  +G++P V+T+NIL+  + K G I
Sbjct: 654 NTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  + I  ++  Y+ ++  LC    L  AV LFD +  + +  + +TY+ L+     KQ 
Sbjct: 149 AFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMC-GLAKQD 207

Query: 91  RFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTY 148
           R   A+ LL  + R   + ++  Y+ ++ G  + G +E+  +  D+L  + G  P + TY
Sbjct: 208 RLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           N++++GLCK G   E  ++  +M      PD  ++  +I G     + D A+
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319



 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNILINGLCKKGMIMEAD 165
           I  ++ ++D   R  R+ +A      LS     + + P + TYNI++  LC +G +  A 
Sbjct: 119 IRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAV 178

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L   ++ +   PD  +++T++ G   ++  D A   L +
Sbjct: 179 TLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDE 218


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CKI +++SA       +  G+C +   Y++LI+G C   +L  A  L + M   G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + TYN LIH    KQ  FS A  L + +  +    N+  Y+ +IDGLC+ G    A 
Sbjct: 562 RPNVQTYNVLIH-GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +++ E+G +P ++TY+ LI  L ++G + EA+ L  +++  G  PD  ++  +I+ +
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680

Query: 191 LVKNETDRASSFLKK 205
           ++  + + A +FL +
Sbjct: 681 IMSGKVEHAFNFLGR 695



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   I G C      SA++        G   D + Y+ LI G C  +
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  LF++MV  G+    VTY  LI    + +   +A +LL+ ++R     N++ Y+
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL +   +  A +    + E+G+ P VVTY  +I+GLCK G    A ++  +M E+
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +++++I+    + + + A +   +
Sbjct: 630 GCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +V+ Y++LI+GLC    LK A+ LF +M   G+    VTYN LI+   E +    
Sbjct: 349 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKY 408

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  + R+    NI  Y+ +I G C +G  ++A   ++ + ++G    +VTYN +I 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G C  G    A ++L  M++ GC PD  S+  +I GF
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN + + R I  A        + G   ++  Y+ +I G C     K+A+ + 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+ +G +A LVTYN +I    +     SA+ +L  +     + +   Y+ +I G C++
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A    +++ + GL P  VTY  LI+G CK   +  A  LL  MK  GC P+  ++
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I G   +N    A    K
Sbjct: 569 NVLIHGLTKQNNFSGAEELCK 589



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 27/212 (12%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E     +   Y   I G C+  ++DSA+       K+G   +   YS+LINGLC   R+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 58  EAVELFDKMVAQGI--TAELVTYNPLI--------HDNWEKQGRFSAMALLQTLERDKYE 107
           EA +L  +M+  GI  TA   T  P+I         D W          L   ++    E
Sbjct: 303 EAFDLIREMILHGILPTAHTCT-GPIIALCDMGCYEDAWR---------LFVDMKNKGCE 352

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+ +I GLC  G  + A     ++S  G+ P  VTYN LIN L +   I  A  +
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M   GC P+  ++N +I+G+ +  +  +A
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  ++ +Y+++IN LC    + +A  +  K+    ++ +  TY  +I  +  K   
Sbjct: 207 LSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ +   + ++  E N   YS +I+GLC  GR  EA   + ++   G++P   T    
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           I  LC  G   +A +L V MK KGC P+  ++  +I G  V 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +       +++ +++G   ++  Y+++I G C       A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M   G   +  +Y  LI    +     SA  L   +  D    N   Y+ +IDG C+ 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + + A   L+ +   G  P V TYN+LI+GL K+     A++L   M E+G FP+  ++
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I G      T  A     K
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNK 625



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   + G+ + +F YS+L+  L         ++ + +M+++G+   L+ YN +I+   +
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  +++ +   +   +   Y+ +I G CR    + A +  +Q++++G  P  VT
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           Y+ LINGLC  G + EA  L+ +M   G  P + +
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 44/194 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + I+G+ K      A       I++GI  +V  Y+++I+GLC       A+E
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+KM+ QG    L+TY+ LI                                     L 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIR-----------------------------------ALG 646

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ EEA     +L   GL+P  +TY  +I      G +  A   L +M + GC P   
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLW 706

Query: 182 SFNTVIQGFLVKNE 195
           ++  +I+G  +KNE
Sbjct: 707 TYGVLIKG--LKNE 718



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI     K+     M+ L  L +    + +  YS ++  L R+G       +  ++  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P ++ YN +IN LCK G + +A+ ++ ++ E    PD+ ++ ++I G   K++ D A
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER--------DKY----- 106
           + L     ++   A  +++  ++  +  + G F+  ALL  L R        D+Y     
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 107 ---ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              + N+ +Y+ VI+ LC+ G   +A   + ++ E  + P   TY  +I G C+K  +  
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A ++  QM ++GC P++ +++T+I G       + A   +++
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           K+ E+D        L V V ++L++ L T  R  EA EL   M++QG+  +   YN L+ 
Sbjct: 754 KLAELDPG------LSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLC 807

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                +    AM + + +     E+++  Y  +I  LC++ R +EAR   + +  +   P
Sbjct: 808 SLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNP 867

Query: 144 GVVTYNILINGLCKKG 159
             V   +LI+GL + G
Sbjct: 868 DDVVQAVLIDGLLRDG 883



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 24/168 (14%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----HDNWEK 88
           + G+  D   Y  +I       +++ A     +M+  G    L TY  LI    ++    
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLA 722

Query: 89  QGRFSAMALL--------QTLERDKYE------------LNIEVYSLVIDGLCRVGRWEE 128
             R +A+  +        QT ++D               L+++V + ++  L   GRW E
Sbjct: 723 DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFE 782

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           A + L  +  +GL P    YN L+  L +   +  A  +   M  +GC
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----- 82
           + S I +G+C D   Y+SL+  L     +  A+ +F  M  QG    L  Y  LI     
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 83  -HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
            H   E +  F  M L++T   D       V +++IDGL R G  +   + L  +  +  
Sbjct: 847 LHRRKEARITFENM-LMRTWNPDDV-----VQAVLIDGLLRDGYKDLCMEFLHIMETRRY 900

Query: 142 VPGVVTYNILINGLCKK 158
           +P    Y IL     KK
Sbjct: 901 MPSFHIYTILAREASKK 917


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CKI +++SA       +  G+C +   Y++LI+G C   +L  A  L + M   G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + TYN LIH    KQ  FS A  L + +  +    N+  Y+ +IDGLC+ G    A 
Sbjct: 562 RPNVQTYNVLIH-GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +++ E+G +P ++TY+ LI  L ++G + EA+ L  +++  G  PD  ++  +I+ +
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680

Query: 191 LVKNETDRASSFLKK 205
           ++  + + A +FL +
Sbjct: 681 IMSGKVEHAFNFLGR 695



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   I G C      SA++        G   D + Y+ LI G C  +
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  LF++MV  G+    VTY  LI    + +   +A +LL+ ++R     N++ Y+
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL +   +  A +    + E+G+ P VVTY  +I+GLCK G    A ++  +M E+
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +++++I+    + + + A +   +
Sbjct: 630 GCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +V+ Y++LI+GLC    LK A+ LF +M   G+    VTYN LI+   E +    
Sbjct: 349 KGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKY 408

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  + R+    NI  Y+ +I G C +G  ++A   ++ + ++G    +VTYN +I 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G C  G    A ++L  M++ GC PD  S+  +I GF
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN + + R I  A        + G   ++  Y+ +I G C     K+A+ + 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+ +G +A LVTYN +I    +     SA+ +L  +     + +   Y+ +I G C++
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A    +++ + GL P  VTY  LI+G CK   +  A  LL  MK  GC P+  ++
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I G   +N    A    K
Sbjct: 569 NVLIHGLTKQNNFSGAEELCK 589



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 27/212 (12%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E     +   Y   I G C+  ++DSA+       K+G   +   YS+LINGLC   R+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 58  EAVELFDKMVAQGI--TAELVTYNPLI--------HDNWEKQGRFSAMALLQTLERDKYE 107
           EA +L  +M+  GI  TA   T  P+I         D W          L   ++    E
Sbjct: 303 EAFDLIREMILHGILPTAHTCT-GPIIALCDMGCYEDAWR---------LFVDMKNKGCE 352

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+ +I GLC  G  + A     ++S  G+ P  VTYN LIN L +   I  A  +
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M   GC P+  ++N +I+G+ +  +  +A
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  ++ +Y+++IN LC    + +A  +  K+    ++ +  TY  +I  +  K   
Sbjct: 207 LSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ +   + ++  E N   YS +I+GLC  GR  EA   + ++   G++P   T    
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           I  LC  G   +A +L V MK KGC P+  ++  +I G  V 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +       +++ +++G   ++  Y+++I G C       A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M   G   +  +Y  LI    +     SA  L   +  D    N   Y+ +IDG C+ 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + + A   L+ +   G  P V TYN+LI+GL K+     A++L   M E+G FP+  ++
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I G      T  A     K
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNK 625



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   + G+ + +F YS+L+  L         ++ + +M+++G+   L+ YN +I+   +
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  +++ +   +   +   Y+ +I G CR    + A +  +Q++++G  P  VT
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           Y+ LINGLC  G + EA  L+ +M   G  P + +
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 44/194 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + I+G+ K      A       I++GI  +V  Y+++I+GLC       A+E
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+KM+ QG    L+TY+ LI                                     L 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIR-----------------------------------ALG 646

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ EEA     +L   GL+P  +TY  +I      G +  A   L +M + GC P   
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLW 706

Query: 182 SFNTVIQGFLVKNE 195
           ++  +I+G  +KNE
Sbjct: 707 TYGVLIKG--LKNE 718



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI     K+     M+ L  L +    + +  YS ++  L R+G       +  ++  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P ++ YN +IN LCK G + +A+ ++ ++ E    PD+ ++ ++I G   K++ D A
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER--------DKY----- 106
           + L     ++   A  +++  ++  +  + G F+  ALL  L R        D+Y     
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 107 ---ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              + N+ +Y+ VI+ LC+ G   +A   + ++ E  + P   TY  +I G C+K  +  
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A ++  QM ++GC P++ +++T+I G       + A   +++
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           K+ E+D        L V V ++L++ L T  R  EA EL   M++QG+  +   YN L+ 
Sbjct: 754 KLAELDPG------LSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLC 807

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                +    AM + + +     E+++  Y  +I  LC++ R +EAR   + +  +   P
Sbjct: 808 SLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNP 867

Query: 144 GVVTYNILINGLCKKG 159
             V   +LI+GL + G
Sbjct: 868 DDVVQAVLIDGLLRDG 883



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 24/168 (14%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----HDNWEK 88
           + G+  D   Y  +I       +++ A     +M+  G    L TY  LI    ++    
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLA 722

Query: 89  QGRFSAMALL--------QTLERDKYE------------LNIEVYSLVIDGLCRVGRWEE 128
             R +A+  +        QT ++D               L+++V + ++  L   GRW E
Sbjct: 723 DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFE 782

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           A + L  +  +GL P    YN L+  L +   +  A  +   M  +GC
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + S I +G+C D   Y+SL+  L     +  A+ +F  M  QG    L  Y  LI    +
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              R  A    + +    +  +  V +++IDGL R G  +   + L  +  +  +P    
Sbjct: 847 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 148 YNILINGLCKK 158
           Y IL     KK
Sbjct: 907 YTILAREASKK 917


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
             E R KG       Y I I G+C+ ++   A+K        G+  ++  Y+ LING C 
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++  AV LF+++ + G++  LVTYN LI    + +    A+ L++ +E      +   
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVT 405

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++ID   R+   ++A +    + + GLVP V TY++LI+G C  G + EA K    + 
Sbjct: 406 YTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLG 465

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E    P+S  +NT+I G+  +  + RA   L +
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE 498



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 7/206 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
           F++ + +   N + +GI I G C+        R +    + G+  +V +Y++LI+G C  
Sbjct: 147 FNVLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKN 206

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             +  A  LF KM   G+     TY+ L++  +++  +     + + + R     N   Y
Sbjct: 207 GDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAY 266

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G  ++A K   ++ EKG+  GV+TYNILI GLC+     EA KL+ ++ +
Sbjct: 267 NCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNK 326

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  P+  ++N +I GF    + D A
Sbjct: 327 VGLSPNIVTYNILINGFCDVGKMDTA 352



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+   ++   D A        K G+  DV+ YS LI+G C    +KEA + F  + 
Sbjct: 406 YTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLG 465

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +    V YN +IH   ++   + A+ LL  +       N+  +   +  LCR  +W+
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWK 525

Query: 128 EARKKLDQLSEKGLVPGVVTYNIL 151
           EA   L Q+   GL P V  Y ++
Sbjct: 526 EAELLLGQMINSGLKPSVSLYKMV 549



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 7/179 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G  K+  +  A+       ++ I      Y+ LI+     N   +A E+   M 
Sbjct: 371 YNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLME 430

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  ++ TY+ LIH          A    ++L     + N  +Y+ +I G C+ G   
Sbjct: 431 KSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY 490

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            A + L+++   G+VP V ++   +  LC+     EA+ LL QM   G  P  + +  V
Sbjct: 491 RALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CKI +++SA       +  G+C +   Y++LI+G C   +L  A  L + M   G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + TYN LIH    KQ  FS A  L + +  +    N+  Y+ +IDGLC+ G    A 
Sbjct: 562 RPNVQTYNVLIH-GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +++ E+G +P ++TY+ LI  L ++G + EA+ L  +++  G  PD  ++  +I+ +
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680

Query: 191 LVKNETDRASSFLKK 205
           ++  + + A +FL +
Sbjct: 681 IMSGKVEHAFNFLGR 695



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   I G C      SA++        G   D + Y+ LI G C  +
Sbjct: 450 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  LF++MV  G+    VTY  LI    + +   +A +LL+ ++R     N++ Y+
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL +   +  A +    + E+G+ P VVTY  +I+GLCK G    A ++  +M E+
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +++++I+    + + + A +   +
Sbjct: 630 GCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +V+ Y++LI+GLC    LK A+ LF +M   G+    VTYN LI+   E +    
Sbjct: 349 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKY 408

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  + R+    NI  Y+ +I G C +G  ++A   ++ + ++G    +VTYN +I 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G C  G    A ++L  M++ GC PD  S+  +I GF
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN + + R I  A        + G   ++  Y+ +I G C     K+A+ + 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+ +G +A LVTYN +I    +     SA+ +L  +     + +   Y+ +I G C++
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A    +++ + GL P  VTY  LI+G CK   +  A  LL  MK  GC P+  ++
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I G   +N    A    K
Sbjct: 569 NVLIHGLTKQNNFSGAEELCK 589



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 27/212 (12%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E     +   Y   I G C+  ++DSA+       K+G   +   YS+LINGLC   R+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 58  EAVELFDKMVAQGI--TAELVTYNPLI--------HDNWEKQGRFSAMALLQTLERDKYE 107
           EA +L  +M+  GI  TA   T  P+I         D W          L   ++    E
Sbjct: 303 EAFDLIREMILHGILPTAHTCT-GPIIALCDMGCYEDAWR---------LFVDMKNKGCE 352

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+ +I GLC  G  + A     ++S  G+ P  VTYN LIN L +   I  A  +
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M   GC P+  ++N +I+G+ +  +  +A
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  ++ +Y+++IN LC    + +A  +  K+    ++ +  TY  +I  +  K   
Sbjct: 207 LSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ +   + ++  E N   YS +I+GLC  GR  EA   + ++   G++P   T    
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           I  LC  G   +A +L V MK KGC P+  ++  +I G  V 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +       +++ +++G   ++  Y+++I G C       A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M   G   +  +Y  LI    +     SA  L   +  D    N   Y+ +IDG C+ 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 543

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + + A   L+ +   G  P V TYN+LI+GL K+     A++L   M E+G FP+  ++
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I G      T  A     K
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNK 625



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   + G+ + +F YS+L+  L         ++ + +M+++G+   L+ YN +I+   +
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  +++ +   +   +   Y+ +I G CR    + A +  +Q++++G  P  VT
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           Y+ LINGLC  G + EA  L+ +M   G  P + +
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 44/194 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + I+G+ K      A       I++GI  +V  Y+++I+GLC       A+E
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+KM+ QG    L+TY+ LI                                     L 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIR-----------------------------------ALG 646

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ EEA     +L   GL+P  +TY  +I      G +  A   L +M + GC P   
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLW 706

Query: 182 SFNTVIQGFLVKNE 195
           ++  +I+G  +KNE
Sbjct: 707 TYGVLIKG--LKNE 718



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI     K+     M+ L  L +    + +  YS ++  L R+G       +  ++  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P ++ YN +IN LCK G + +A+ ++ ++ E    PD+ ++ ++I G   K++ D A
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER--------DKY----- 106
           + L     ++   A  +++  ++  +  + G F+  ALL  L R        D+Y     
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 107 ---ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              + N+ +Y+ VI+ LC+ G   +A   + ++ E  + P   TY  +I G C+K  +  
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A ++  QM ++GC P++ +++T+I G       + A   +++
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           K+ E+D        L V V ++L++ L T  R  EA EL   M++QG+  +   YN L+ 
Sbjct: 754 KLAELDPG------LSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLC 807

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                +    AM + + +     E+++  Y  +I  LC++ R +EAR   + +  +   P
Sbjct: 808 SLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNP 867

Query: 144 GVVTYNILINGLCKKG 159
             V   +LI+GL + G
Sbjct: 868 DDVVQAVLIDGLLRDG 883



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 24/168 (14%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----HDNWEK 88
           + G+  D   Y  +I       +++ A     +M+  G    L TY  LI    ++    
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLA 722

Query: 89  QGRFSAMALL--------QTLERDKYE------------LNIEVYSLVIDGLCRVGRWEE 128
             R +A+  +        QT ++D               L+++V + ++  L   GRW E
Sbjct: 723 DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFE 782

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           A + L  +  +GL P    YN L+  L +   +  A  +   M  +GC
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 61/154 (39%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + S I +G+C D   Y+SL+  L     +  A+ +F  M  QG    L  Y  LI    +
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
              R  A    + +    +  +  V +++IDGL R G  +   + L  +  +  +P    
Sbjct: 847 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           Y IL     KK         + ++K   C    T
Sbjct: 907 YTILAREASKKRSWKHVAGCITKVKRATCSTSCT 940


>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 367

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI ++G CK       I  ++ A +KG  LD F YS++INGLC   +L +AV + + M+
Sbjct: 97  YGILVHGFCKNGYLNKSIHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMI 156

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G       YN LI+          A+ +L+ +    +   +  YS +I+GLC+  R+ 
Sbjct: 157 KNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFSPTVVTYSXJINGLCKGERFG 216

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   + ++ +KGL P V+TY++LI GLC    + +A +L  Q+  KG  PD    N +I
Sbjct: 217 EAYDLVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQVISKGFKPDVQMHNIMI 276

Query: 188 QGF 190
            G 
Sbjct: 277 HGL 279



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             V  YS JINGLC   R  EA +
Sbjct: 161 KPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFSPTVVTYSXJINGLCKGERFGEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+   ++TY+ LI      +    A+ L   +    ++ ++++++++I GLC
Sbjct: 221 LVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQVISKGFKPDVQMHNIMIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A   L  ++     P +VT+N L+ G  K G +  A  +  ++   G  PD  
Sbjct: 281 SVGKMQLALS-LYYMNRWDCAPNLVTHNTLMEGFYKDGDVRNALVIWARILRNGLQPDII 339

Query: 182 SFNTVIQGFLVKNETDRASSFLK 204
           S+N  ++G    N    A  FL+
Sbjct: 340 SYNITLKGLCSCNRISGAILFLQ 362



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 43/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  ++  I    +      +     V  ++ +  GL    +
Sbjct: 15  EIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREGSRSVSSFNIMXRGLFBNGK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E + +++ M   G   + +TY  L+H  + K G  + ++ +L+  ER    L+   YS
Sbjct: 75  VDEVISIWELMKESGYVEDSITYGILVH-GFCKNGYLNKSIHVLEIAERKGGVLDAFAYS 133

Query: 115 LVIDGLCR-----------------------------------VGRWEEARKKLDQLSEK 139
            +I+GLC+                                     ++E+A + L ++   
Sbjct: 134 AMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTX 193

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P VVTY+ JINGLCK     EA  L+ +M +KG  P   +++ +I+G  +  + D+A
Sbjct: 194 HFSPTVVTYSXJINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKA 253


>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
 gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   + G+CK   +D A K       KG+C D   Y+++I  LC     ++A  LF
Sbjct: 288 DVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLC-DTVSYNTVIGALCKSFATRKAYRLF 346

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  + +  ++ T+  LI     +     A  LLQT+ +     ++  Y+ V+D  C+ 
Sbjct: 347 EEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQTMTQTVLIPDLIFYTTVVDYFCKT 406

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A+     + E G+ P VV+YN LINGLCK   + EA  L  +M+ +GC+PD  +F
Sbjct: 407 RKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTF 466

Query: 184 NTVIQGFLVKNETDRA 199
             +I G L K E   A
Sbjct: 467 KLIIGGLLRKKELSLA 482



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 5/166 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA--LL 98
            +++SL++G C   R+ +A+ +   M   G   +L+TYN L+  N+   G    +A   +
Sbjct: 220 LIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILL--NFFCDGLMLELAGKSM 277

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +ER   E ++  Y+ ++ GLC+  R ++A K ++ + EKGL    V+YN +I  LCK 
Sbjct: 278 KKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLC-DTVSYNTVIGALCKS 336

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               +A +L  +M +K   PD  +F T+I+ FL++     A   L+
Sbjct: 337 FATRKAYRLFEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQ 382



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++  D  + KG   DV  Y+ +++ LC   +  +AVE +  MV +G++ ++     L+  
Sbjct: 134 LKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVG 193

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +      A  L     + + + N  +++ ++ G C+ GR  +A      +S+ G  P 
Sbjct: 194 LCDGGKVDLAYELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPD 253

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++TYNIL+N  C   M+  A K + +M+  G  PD  S+N +++G    N  D+A
Sbjct: 254 LITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKA 308



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ++ +CK ++ D A++       KG+  D+   ++L+ GLC   ++  A EL    
Sbjct: 151 TYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGKVDLAYELTVGE 210

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +   +    + +N L+   + K GR S A+A+   + +   E ++  Y+++++  C    
Sbjct: 211 MKGEMKFNNLIFNSLMS-GFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLM 269

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E A K + ++   G+ P V +YN L+ GLCK   + +A KL+  M EKG   D+ S+NT
Sbjct: 270 LELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKG-LCDTVSYNT 328

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
           VI G L K+   R +  L + M
Sbjct: 329 VI-GALCKSFATRKAYRLFEEM 349



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 7/201 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKE 58
            R   N  V+   I    K+  ID AI+      +  C +    Y+  I  L + +R   
Sbjct: 3   HRLGANRLVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDL 62

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A   + +M+ QG +    TY+  I    E +       LL+ +++  Y  +I  +++ ++
Sbjct: 63  AESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLN 122

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L R    E A K  D++  KG  P VVTY I+++ LCK     +A +    M  KG  P
Sbjct: 123 LLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSP 182

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           D  +   ++ G     + D A
Sbjct: 183 DMKACTALVVGLCDGGKVDLA 203



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 12/215 (5%)

Query: 1   FDLTEQRFKG----NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLING 49
           ++LT    KG    N  ++   ++G CK   I  A+       K G   D+  Y+ L+N 
Sbjct: 204 YELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNF 263

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            C    L+ A +   KM   G+  ++ +YN L+    +      A  L+ T+  +K   +
Sbjct: 264 FCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTM-WEKGLCD 322

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y+ VI  LC+     +A +  +++ +K + P V T+  LI     +G    A  LL 
Sbjct: 323 TVSYNTVIGALCKSFATRKAYRLFEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQ 382

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            M +    PD   + TV+  F    + + A    +
Sbjct: 383 TMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFR 417



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 66/164 (40%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
            V+ + I        + EA+ +FD+M           YN  I     +     A +    
Sbjct: 10  LVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYYSR 69

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +    + L    YS  I  LC +  +    + L+ + + G +P +  +NI +N L ++ +
Sbjct: 70  MIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFRENL 129

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +  A K   +M  KG  PD  ++  ++       + D+A  F +
Sbjct: 130 LELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWR 173


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     + + +   +NG CK+  +  A       I+ G   D F Y+S I G C   
Sbjct: 145 EMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRK 204

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A ++F +M   G     V+Y  LI+  +E +    A++LL  ++ D    N+  Y+
Sbjct: 205 EVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYT 264

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID LC  G+  EA     Q+SE G+ P    Y +LI   C    + EA  LL  M E 
Sbjct: 265 VLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN 324

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++N +I+GF  KN   +A   L K
Sbjct: 325 GLMPNVITYNALIKGFCKKN-VHKAMGLLSK 354



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T+     N   Y   I G+ + ++ID A+           C +V  Y+ LI+ LC   
Sbjct: 215 EMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSG 274

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  EA+ LF +M   GI  +   Y  LI           A  LL+ +  +    N+  Y+
Sbjct: 275 QKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYN 334

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+     +A   L ++ E+ LVP ++TYN LI G C  G +  A +LL  M+E 
Sbjct: 335 ALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEES 393

Query: 175 GCFPD 179
           G  P+
Sbjct: 394 GLVPN 398



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           KY+L  + Y+ ++  L R G  EE ++   ++ E  + P + T+N L+NG CK G ++EA
Sbjct: 115 KYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA 174

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + +  + + GC PD  ++ + I G   + E D A    K+
Sbjct: 175 KQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKE 215


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CKI +++SA       +  G+C +   Y++LI+G C   +L  A  L + M   G 
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + TYN LIH    KQ  FS A  L + +  +    N+  Y+ +IDGLC+ G    A 
Sbjct: 732 RPNVQTYNVLIH-GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 790

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +++ E+G +P ++TY+ LI  L ++G + EA+ L  +++  G  PD  ++  +I+ +
Sbjct: 791 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 850

Query: 191 LVKNETDRASSFLKK 205
           ++  + + A +FL +
Sbjct: 851 IMSGKVEHAFNFLGR 865



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   I G C      SA++        G   D + Y+ LI G C  +
Sbjct: 620 NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 679

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  LF++MV  G+    VTY  LI    + +   +A +LL+ ++R     N++ Y+
Sbjct: 680 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 739

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL +   +  A +    + E+G+ P VVTY  +I+GLCK G    A ++  +M E+
Sbjct: 740 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 799

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +++++I+    + + + A +   +
Sbjct: 800 GCLPNLLTYSSLIRALGQEGKVEEAENLFAE 830



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   +V+ Y++LI+GLC    LK A+ LF +M   G+    VTYN LI+   E +    
Sbjct: 519 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKY 578

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +L  + R+    NI  Y+ +I G C +G  ++A   ++ + ++G    +VTYN +I 
Sbjct: 579 AFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 638

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G C  G    A ++L  M++ GC PD  S+  +I GF
Sbjct: 639 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 675



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN + + R I  A        + G+  ++  Y+ +I G C     K+A+ + 
Sbjct: 559 NTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVM 618

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+ +G +A LVTYN +I    +     SA+ +L  +     + +   Y+ +I G C++
Sbjct: 619 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 678

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A    +++ + GL P  VTY  LI+G CK   +  A  LL  MK  GC P+  ++
Sbjct: 679 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 738

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I G   +N    A    K
Sbjct: 739 NVLIHGLTKQNNFSGAEELCK 759



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 9   KGNFHVYGIRINGMCK---IREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N  +Y   IN +CK   + + ++ +KK     +  D F Y+S+I G C  + L  A++
Sbjct: 382 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 441

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F++M  +G     VTY+ LI+   +      A  L++ +            +  I  LC
Sbjct: 442 VFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC 501

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            +G +E+A +    +  KG  P V TY  LI+GLC  G++  A  L  +M   G FP++ 
Sbjct: 502 DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 561

Query: 182 SFNTVIQGFLVKN 194
           ++N +I   LV+N
Sbjct: 562 TYNALIN-ILVEN 573



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           E     +   Y   I G C+  ++DSA+       K+G   +   YS+LINGLC   R+ 
Sbjct: 413 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 472

Query: 58  EAVELFDKMVAQGI--TAELVTYNPLI--------HDNWEKQGRFSAMALLQTLERDKYE 107
           EA +L  +M+  GI  TA   T  P+I         D W          L   ++    E
Sbjct: 473 EAFDLIREMILHGILPTAHTCT-GPIIALCDMGCYEDAWR---------LFVDMKNKGCE 522

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+ +I GLC  G  + A     ++S  G+ P  VTYN LIN L +   I  A  +
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 582

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M   G F +  ++N +I+G+ +  +  +A
Sbjct: 583 LNLMGRNGLFTNIVTYNEMIKGYCILGDPKKA 614



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  ++ +Y+++IN LC    + +A  +  K+    ++ +  TY  +I  +  K   
Sbjct: 377 LSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 436

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ +   + ++  E N   YS +I+GLC  GR  EA   + ++   G++P   T    
Sbjct: 437 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 496

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           I  LC  G   +A +L V MK KGC P+  ++  +I G  V 
Sbjct: 497 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 538



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +       +++ +++G   ++  Y+++I G C       A+ + 
Sbjct: 594 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 653

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M   G   +  +Y  LI    +     SA  L   +  D    N   Y+ +IDG C+ 
Sbjct: 654 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 713

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + + A   L+ +   G  P V TYN+LI+GL K+     A++L   M E+G FP+  ++
Sbjct: 714 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 773

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I G      T  A     K
Sbjct: 774 TAMIDGLCKNGSTSLALEMFNK 795



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   + G+ + +F YS+L+  L         ++ + +M+++G+   L+ YN +I+   +
Sbjct: 338 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 397

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A  +++ +   +   +   Y+ +I G CR    + A +  +Q++++G  P  VT
Sbjct: 398 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 457

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           Y+ LINGLC  G + EA  L+ +M   G  P + +
Sbjct: 458 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 492



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 44/194 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y + I+G+ K      A       I++GI  +V  Y+++I+GLC       A+E
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+KM+ QG    L+TY+ LI                                     L 
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIR-----------------------------------ALG 816

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+ EEA     +L   GL+P  +TY  +I      G +  A   L +M + GC P   
Sbjct: 817 QEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLW 876

Query: 182 SFNTVIQGFLVKNE 195
           ++  +I+G  +KNE
Sbjct: 877 TYGVLIKG--LKNE 888



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 16/134 (11%)

Query: 88  KQGRFSAMALLQTLER--------DKY--------ELNIEVYSLVIDGLCRVGRWEEARK 131
           + G F+  ALL  L R        D+Y        + N+ +Y+ VI+ LC+ G   +A  
Sbjct: 347 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 406

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + ++ E  + P   TY  +I G C+K  +  A ++  QM ++GC P++ +++T+I G  
Sbjct: 407 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 192 VKNETDRASSFLKK 205
                + A   +++
Sbjct: 467 DSGRVNEAFDLIRE 480



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 81  LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           LI     K+     M+ L  L +    + +  YS ++  L R+G       +  ++  +G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P ++ YN +IN LCK G + +A+ ++ ++ E    PD+ ++ ++I G   K++ D A
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 439



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 24   KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
            K+ E+D        L V V ++L++ L T  R  EA EL   M++QG+  +   YN L+ 
Sbjct: 924  KLAELDPG------LSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLC 977

Query: 84   DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
                 +    AM + + +     E+++  Y  +I  LC++ R +EAR   + +  +   P
Sbjct: 978  SLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNP 1037

Query: 144  GVVTYNILINGLCKKG 159
              V   +LI+GL + G
Sbjct: 1038 DDVVQAVLIDGLLRDG 1053



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 24/168 (14%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----HDNWEK 88
            + G+  D   Y  +I       +++ A     +M+  G    L TY  LI    ++    
Sbjct: 833  RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLA 892

Query: 89   QGRFSAMALL--------QTLERDKYE------------LNIEVYSLVIDGLCRVGRWEE 128
              R +A+  +        QT ++D               L+++V + ++  L   GRW E
Sbjct: 893  DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFE 952

Query: 129  ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
            A + L  +  +GL P    YN L+  L +   +  A  +   M  +GC
Sbjct: 953  ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 1000



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%)

Query: 28   IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
            + S I +G+C D   Y+SL+  L     +  A+ +F  M  QG    L  Y  LI    +
Sbjct: 957  LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 1016

Query: 88   KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
               R  A    + +    +  +  V +++IDGL R G  +   + L  +  +  +P    
Sbjct: 1017 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 1076

Query: 148  YNILINGLCKK 158
            Y IL     KK
Sbjct: 1077 YTILAREASKK 1087


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 30/233 (12%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGI-CLDVFVYSSLINGLCTFN 54
           ++  +  + N + Y I ++G+CK       R +++ I+ G+   DV  Y+SL++  C+  
Sbjct: 341 EMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A  + D+M  +G      TYN L+   W       A  LL+ +    Y L+    +
Sbjct: 401 NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCN 460

Query: 115 LVIDGLCRVGR-----------WEEARKKLDQLSEKGL------------VPGVVTYNIL 151
           ++IDGLCR  R           WEE    L +L    L            +P  +TY+IL
Sbjct: 461 IIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSIL 520

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           I+ LCK+G   EA K L++M  K   PDS  ++T I G+    +T  A   L+
Sbjct: 521 ISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLR 573



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS+I +    D   YS LI+ LC   R  EA +   +M+ + I+ + V Y+  IH  + K
Sbjct: 503 DSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIH-GYCK 561

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G+ S A+ +L+ +E+     +   Y+L+I G     + EE  K + ++ EKG+ P V+T
Sbjct: 562 HGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMT 621

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN LI   C++GM+ +A  LL +M +    P+ TSF+ +I+ +
Sbjct: 622 YNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAY 664



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAIK----------KGIC-LDVFVYSSLINGLCTFN 54
           Q    N   +  RI+ +CK   +  A +           G+   D   +  +++G C   
Sbjct: 236 QGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAG 295

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            + EA  L D M   G    + +YN  +     + GR   A  LL+ +  +  + N   Y
Sbjct: 296 FVDEARVLVDIMRCGGFLRRVESYNRWL-SGLVRNGRVGEAQELLREMAHEGIQPNSYTY 354

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++ GLC+ G+  +AR+  + +    + P VVTY  L++  C KG I  A+++L +M +
Sbjct: 355 NIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQ 414

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KGC P+S ++N ++Q       T  A   L++
Sbjct: 415 KGCAPNSFTYNVLLQSLWRAGRTTEAERLLER 446



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 23/209 (11%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            H Y  + N     R +D   +KG   + F Y+ L+  L    R  EA  L ++M  +G 
Sbjct: 393 LHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGY 452

Query: 72  TAELVTYN----------------PLIHDNWEKQ----GRF--SAMALLQTLERDKYELN 109
           + +    N                 ++   WE+     GR   S ++++      +  L 
Sbjct: 453 SLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLP 512

Query: 110 IEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            ++ YS++I  LC+ GR++EA+KKL ++  K + P  V Y+  I+G CK G    A K+L
Sbjct: 513 DQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVL 572

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             M++KGC P + ++N +I+GF  K++++
Sbjct: 573 RDMEKKGCNPSTRTYNLLIRGFEEKHKSE 601



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-----IKK--GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ++G C    +D A     I +  G    V  Y+  ++GL    R+ EA EL  +M
Sbjct: 283 TFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREM 342

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI     TYN ++    ++   F A  +   +       ++  Y+ ++   C  G  
Sbjct: 343 AHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNI 402

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A + LD++++KG  P   TYN+L+  L + G   EA++LL +M EKG   D+   N +
Sbjct: 403 AAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNII 462

Query: 187 IQGFLVKNETDRA 199
           I G    +  D A
Sbjct: 463 IDGLCRNSRLDVA 475



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 27/196 (13%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-----------------------VAQ 69
           +KG  LD    + +I+GLC  +RL  A+++ D M                       ++Q
Sbjct: 449 EKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQ 508

Query: 70  GITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
               + +TY+ LI     K+GRF  +   LL+ + +D    ++ +Y   I G C+ G+  
Sbjct: 509 RCLPDQITYSILI-SALCKEGRFDEAKKKLLEMIVKDISPDSV-IYDTFIHGYCKHGKTS 566

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K L  + +KG  P   TYN+LI G  +K    E  KL+ +MKEKG  P+  ++N++I
Sbjct: 567 LAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLI 626

Query: 188 QGFLVKNETDRASSFL 203
           + F  +   ++A   L
Sbjct: 627 KSFCQQGMVNKAMPLL 642



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 24/171 (14%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-----GITAELVTYNPLIHDNWEKQGR-F 92
           DVF  + L+  LC   R++ A  +FD M A+     GI A            + + GR  
Sbjct: 144 DVFTRNLLLQALCDAGRMELAQRVFDAMPARNEFSFGILAR----------GYCRAGRSI 193

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ +L  +      +N+ V + V+ G C+ G  EEA + ++++  +GL P VVT+N  I
Sbjct: 194 DALKVLDGMP----SMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARI 249

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCF----PDSTSFNTVIQGFLVKNETDRA 199
           + LCK G +++A ++   M+E        PD  +F+ ++ GF      D A
Sbjct: 250 SALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEA 300



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           QR   +   Y I I+ +CK    D A       I K I  D  +Y + I+G C   +   
Sbjct: 508 QRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSL 567

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+++   M  +G      TYN LI    EK      M L+  ++      N+  Y+ +I 
Sbjct: 568 AIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIK 627

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             C+ G   +A   LD++ +  LVP + ++++LI   CK
Sbjct: 628 SFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCK 666



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 8/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK  +   AIK       KG       Y+ LI G    ++ +E ++L  +M
Sbjct: 551 IYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEM 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI+  ++TYN LI    ++     AM LL  + +++   NI  + L+I   C++  +
Sbjct: 611 KEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDF 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A+   D  + +      V Y ++   L   G  +EA  +L    E      S  +  +
Sbjct: 671 PSAQMVFDA-ALRTCGQKEVLYCLMCTELTTYGKWIEAKNILEMALEMRVSIQSFPYKQI 729

Query: 187 IQGFLVKNETDRASSFLK 204
           I G     E D A S LK
Sbjct: 730 ISGLCEVGEVDHAHSLLK 747


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   + G+C     + A        ++   LD   ++ L++  C    +   +
Sbjct: 314 LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVI 373

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL ++M+  G   +++TY  +I + + K+G    A+ LL+ +     + N   Y++V+ G
Sbjct: 374 ELLEQMLEHGCIPDVITYTTVI-NGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKG 432

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCR  RW +A++ +  + ++G +P  VT+N LIN +CKKG++ +A +LL QM   GC PD
Sbjct: 433 LCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPD 492

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S++TVI G     +T+ A   L
Sbjct: 493 LISYSTVIDGLGKAGKTEEALELL 516



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +  D         ++ G   +V  +++LI  LC     ++  E   +M 
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP 275

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T +L  Y  +I D   K G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 276 EHGCTPDLRMYATII-DGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERW 334

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA   L ++ ++      VT+NIL++  C+ G++    +LL QM E GC PD  ++ TV
Sbjct: 335 EEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 394

Query: 187 IQGFLVKNETDRASSFLK 204
           I GF  +   D A   LK
Sbjct: 395 INGFCKEGLVDEAVMLLK 412



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK--IREIDSAI-----KKGICLDVFVYSSLINGLCTFNR 55
           + E     +  +Y   I+G+CK    E+ + I       G+  +V  Y++++ GLC+  R
Sbjct: 274 MPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAER 333

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA +L  +M  +    + VT+N L+ D + + G     + LL+ +       ++  Y+
Sbjct: 334 WEEAEDLLAEMFQEDCPLDDVTFNILV-DFFCQNGLVDRVIELLEQMLEHGCIPDVITYT 392

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI+G C+ G  +EA   L  +S  G  P  ++Y I++ GLC+    ++A +L+  M ++
Sbjct: 393 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 452

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FNT+I     K   ++A   LK+
Sbjct: 453 GCLPNPVTFNTLINFMCKKGLVEQAIELLKQ 483



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   +D A+         G   +   Y+ ++ GLC   R  +A EL   M+
Sbjct: 391 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 450

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 451 QQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 510

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ + + L ++G   +  ++   +++     D+  +N VI
Sbjct: 511 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 570

Query: 188 QGFLVKNETDRASSF 202
                + ETDRA  F
Sbjct: 571 SSLCKRWETDRAIDF 585



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM--A 96
           D+  Y++++ GLC   R  +  EL  +MV  G    + T+N LI     + G F  +  A
Sbjct: 212 DIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIA-YLCRNGLFEQVHEA 270

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L Q  E      ++ +Y+ +IDG+C+ G  E A   L ++   GL P VV YN ++ GLC
Sbjct: 271 LSQMPEHGCTP-DLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLC 329

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                 EA+ LL +M ++ C  D  +FN ++  F      DR    L++
Sbjct: 330 SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 378



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C+          I   I++G   +   +++LIN +C    +++A+E
Sbjct: 420 KPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIE 479

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 480 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASAL 538

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR ++  +  D + +  +      YN +I+ LCK+     A      M   GC P+ 
Sbjct: 539 SREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 598

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 599 STYTILIRGLASEGLVREAQDLLSE 623



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R +     KG  LD    + +++ +C    + E VEL  K+ + G   ++V+YN ++  
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKG 222

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
               +       L+  + R     N+  ++ +I  LCR G +E+  + L Q+ E G  P 
Sbjct: 223 LCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +  Y  +I+G+CK G    A+ +L +M   G  P+   +NTV++G       + A   L 
Sbjct: 283 LRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLA 342

Query: 205 K 205
           +
Sbjct: 343 E 343



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           ++   C     + AV     + A+G T +    N ++    E+      + LL+ L    
Sbjct: 149 ILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFG 208

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E +I  Y+ V+ GLC   RW++  + + ++   G  P V T+N LI  LC+ G+  +  
Sbjct: 209 CEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVH 268

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + L QM E GC PD   + T+I G       + A+  L +
Sbjct: 269 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 308



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 13/182 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN MCK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 449 MIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 508

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
            +EA+EL + M+ +GIT   + Y+ +      ++GR   +  +  +++      +  +Y+
Sbjct: 509 TEEALELLNVMINKGITPNTIIYSSM-ASALSREGRTDKIIQMFDSIQDATVRSDAALYN 567

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY ILI GL  +G++ EA  LL ++ 
Sbjct: 568 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELC 625

Query: 173 EK 174
            +
Sbjct: 626 SR 627



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D+A   G    V  Y+++I G C   R  +         A  +     TY P++   
Sbjct: 65  RALDTA---GDAAGVVAYNAMIAGYC---RAGQVAAARRLAAAVPVPPNAYTYFPIVRSL 118

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             +     A+ +L  +          +  ++++  CR G +  A + L  L  KG     
Sbjct: 119 CARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDS 178

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
              N++++ +C++G + E  +LL ++   GC PD  S+N V++G  +    D
Sbjct: 179 GNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWD 230



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S+LI  LC   R  +A    D     G  A +V YN +I   + + G+ +A   L     
Sbjct: 48  SALIRSLCAAGRTADAARALDT---AGDAAGVVAYNAMIA-GYCRAGQVAAARRLAAAV- 102

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                N   Y  ++  LC  G   +A   LD++  +G        ++++   C+ G    
Sbjct: 103 -PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A + L  +  KGC  DS + N V+     +   D     L+K
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRK 203


>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 749

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           NF+ Y + I+G CK  E+       D   + GI   V   +S++ G C  N + EA +LF
Sbjct: 153 NFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLF 212

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           + M       ++++ N ++ + + K GR   A++ +  ++ D + LN   YS +I+   +
Sbjct: 213 NDMKETSYPPDMISCN-VVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFK 271

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R+ EA     ++ ++G+VP VV Y I+I GL K+G + EA K+L +M + G  PD+  
Sbjct: 272 ARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYC 331

Query: 183 FNTVIQGFLVKNETDRASSF 202
           +N VIQG       +RA S 
Sbjct: 332 YNAVIQGLCDVGLLNRAQSL 351



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 13/212 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E  +  +     + +NG CK+  ++ A+         G  L+   YSSLIN      
Sbjct: 214 DMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFKAR 273

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R +EA   + KM  QGI  ++V Y  +I     K+GR   A  +L+ + +     +   Y
Sbjct: 274 RYREAHAWYTKMFKQGIVPDVVLYAIMIR-GLSKEGRVGEAAKMLEEMTQIGLTPDAYCY 332

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI GLC VG    A+    ++SE      V T+ ILI  +CK+GM+ EA +L  QM++
Sbjct: 333 NAVIQGLCDVGLLNRAQSLRLEISEHN----VCTHTILICEMCKRGMVAEAQELFNQMEK 388

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P   +FNT+I G    N  ++A +   K
Sbjct: 389 LGCEPSVVTFNTLINGLCKANNLEKAKNLFCK 420



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+ +      +L+         ++A+E F +M   GI  +   YN ++ D   ++   
Sbjct: 77  KNGVLVTSDSVRALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLNEKLLE 136

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+AL  T+ +   E N   Y+++IDG C+ G  + A++ LD++   G+VP V++   ++
Sbjct: 137 LALALYTTMLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSIL 196

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G C+   + EA KL   MKE    PD  S N V+ GF      + A SF+
Sbjct: 197 YGCCQANNVDEAHKLFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFV 247



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N + Y   IN   K R    A        K+GI  DV +Y+ +I GL    R+ EA 
Sbjct: 255 FSLNRNSYSSLINAFFKARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAA 314

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL---QTLERDKYELNIEVYSLVI 117
           ++ ++M   G+T +   YN +I      QG    + LL   Q+L  +  E N+  ++++I
Sbjct: 315 KMLEEMTQIGLTPDAYCYNAVI------QG-LCDVGLLNRAQSLRLEISEHNVCTHTILI 367

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
             +C+ G   EA++  +Q+ + G  P VVT+N LINGLCK   + +A  L  +++
Sbjct: 368 CEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLEKAKNLFCKLE 422



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 42/209 (20%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGI-CLDVFVYSSLINGLCTFNRLKEAV 60
           K +   Y I +N +C  RE+++A        KKG    D   Y ++I GL   +R  EA 
Sbjct: 474 KPDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDEAF 533

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL----------------------- 97
           ++F +M   G    L  Y  L+     K     A  L                       
Sbjct: 534 KVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVSRAFTLYFEHLKSLPSRDNDSISALEKYL 593

Query: 98  ----LQTLERDKYELNIEV-------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
               L+ + R   EL+ +        Y++++ G C+ G+  EA   L  L E  +     
Sbjct: 594 FGEKLEQVIRGLLELDFKARDFKLAPYTILLIGFCQAGKVSEALIILSVLDEFNIKINAT 653

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +   LI GLCK+  + +A K+ +   EKG
Sbjct: 654 SCVHLIRGLCKEQRLHDAVKIFLYSLEKG 682


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 9/214 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD +     + N  VYG  +NG CK+  ID  +        KGI     +Y+ +++GL  
Sbjct: 554 FDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQ 613

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R   A   F +M   GI  +  TY+ ++   ++      A+ L + L     +++I  
Sbjct: 614 AGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITT 673

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +++I G+ ++ R EEA+     +S  GLVP VVTY+I++  L K+G++ EAD +   M+
Sbjct: 674 LNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSME 733

Query: 173 EKGC-FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC  P+S   N V++  L K E  RA ++L K
Sbjct: 734 NAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSK 767



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 2/160 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS   KG   D+F Y  ++NG  T   L +  ELF+ M++ GI  +   +N LI   + K
Sbjct: 345 DSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLI-KAYAK 403

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G    A  +   +     E ++  YS VI  LCR+G+ ++A +K +Q+ ++G+ P + T
Sbjct: 404 CGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSIST 463

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           Y+ LI G C  G +++A  L++QM  KG  PD   FN +I
Sbjct: 464 YHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFII 503



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++ EQ  + +   Y   I  +C+I ++D A++K       G+   +  Y  LI G CT  
Sbjct: 416 EMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHG 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
            L +A +L  +M+ +G+  ++  +N +I +N  K GR   A  +           N+ VY
Sbjct: 476 DLLKAKDLVLQMMNKGMRPDIGCFNFII-NNLCKLGRVMDAQNIFDFTISIGLHPNVMVY 534

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DG C VG+ E A +  D +   G+ P VV Y  L+NG CK G I E   L  ++  
Sbjct: 535 NTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILH 594

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           KG  P +T +N ++ G      T  A
Sbjct: 595 KGIKPSTTLYNIILHGLFQAGRTVPA 620



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H++ + I    K   +D A        ++G+  DV  YS++I  LC   ++ +AVE F++
Sbjct: 392 HIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQ 451

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ QG+   + TY+ LI           A  L+  +       +I  ++ +I+ LC++GR
Sbjct: 452 MIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGR 511

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A+   D     GL P V+ YN L++G C  G +  A ++   M   G  P+   + T
Sbjct: 512 VMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGT 571

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G+      D   S  ++
Sbjct: 572 LVNGYCKVGRIDEGLSLFRE 591



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 44/249 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   +N +CK R +D A       + KG+  D + Y+SLI G  +  
Sbjct: 241 EMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTG 300

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAMA----------- 96
           + KEAV +  KM +QGI  ++VT N L+  +  K G+       F +MA           
Sbjct: 301 QWKEAVRVSKKMTSQGILPDVVTLNSLM-ASLCKHGKIKDARDVFDSMAMKGQKTDIFSY 359

Query: 97  ------------------LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                             L   +  D    +  +++++I    + G  + A    +++ E
Sbjct: 360 KIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMRE 419

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G+ P VVTY+ +I  LC+ G + +A +   QM ++G  P  ++++ +IQGF    +  +
Sbjct: 420 QGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLK 479

Query: 199 ASSFLKKNM 207
           A   + + M
Sbjct: 480 AKDLVLQMM 488



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)

Query: 11  NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE-L 62
             H YGI ++   +              +K G+ +D  + S+L+ GLC   R  EA++ L
Sbjct: 107 TLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDIL 166

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGL 120
             +M   G   ++ +Y  ++      +    A  LL+ +         N   Y+ VIDG 
Sbjct: 167 LHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGF 226

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G   +A    +++ ++G+ P + TYN ++N LCK   + +A+ +L QM +KG  PD+
Sbjct: 227 FKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDN 286

Query: 181 TSFNTVIQGF 190
            ++N++I G+
Sbjct: 287 WTYNSLIYGY 296



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 35  GICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            +CL +   Y+++I+G      + +A +LF++MV +GI+ +L TYN +++   + +    
Sbjct: 210 AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDK 269

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A A+L+ +       +   Y+ +I G    G+W+EA +   +++ +G++P VVT N L+ 
Sbjct: 270 AEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMA 329

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
            LCK G I +A  +   M  KG   D  S+  ++ G+  K
Sbjct: 330 SLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATK 369


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y   ING  K  ++D  + + I  +V  Y+S+I  LC    + +A+E+   MV  G+  +
Sbjct: 91  YSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 150

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            +TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  EARK  D
Sbjct: 151 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 210

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ ++  +  + 
Sbjct: 211 SMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQE 270

Query: 195 ETDRA 199
           + + A
Sbjct: 271 KVEEA 275



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 31/195 (15%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-------------------------- 62
           D  +++GI  DVF Y+ L+NGLC  NR +EA+EL                          
Sbjct: 41  DELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 63  ----FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
                DKM+ Q I+  +VTYN +I    + Q    AM +L T+ +     +   Y+ ++ 
Sbjct: 100 KEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 159

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P
Sbjct: 160 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 219

Query: 179 DSTSFNTVIQGFLVK 193
           D T++ T++QG+  K
Sbjct: 220 DITTYGTLLQGYATK 234



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +QR   N   Y   I  +CK + +D A       +K G+  D   Y+S+++G C+  +
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAM------------- 95
            KEA+    KM + G+  ++VTYN L+ D   K GR       F +M             
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLM-DYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 96  ----------------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                            LL  + R+    N  V+S+++    +  + EEA     ++ ++
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P  VTY  +I+ LCK G + +A     QM ++G  PDS  +N++I    + ++ ++A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 20  NGMC-KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG C + R+I DS  K+G+  D+  Y +L+ G  T   L E   L D MV  GI      
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           ++ L+    +++    AM +   + +     N   Y  VID LC+ GR E+A    +Q+ 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           ++GL P  + YN LI+ LC      +A++L ++M ++G    +  FN++I
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%)

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           L TYN ++H   + +    A+ + Q L     +L    ++++ID L +VGR +EA+    
Sbjct: 452 LGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 511

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
             S  GLVP   TY ++   +  +G++ E D+L + M++ GC  DS   N +++  L + 
Sbjct: 512 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 571

Query: 195 ETDRASSFLK 204
           E  RA ++L 
Sbjct: 572 EITRAGTYLS 581



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  K +   YG  + G      +       D  ++ GI  + +V+S L+     
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAK 268

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             +++EA+ +F KM  QG+    VTY  +I D   K GR   AM   + +  +    +  
Sbjct: 269 QEKVEEAMLVFSKMRQQGLNPNAVTYGTVI-DVLCKSGRVEDAMLYFEQMIDEGLRPDSI 327

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +I  LC   +WE+A +   ++ ++G+    + +N +I+  CK+G ++E+ KL   M
Sbjct: 328 VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLM 387

Query: 172 KEKGCFPD 179
              G  PD
Sbjct: 388 VRIGVKPD 395



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFN 184
           E+AR   D+L  +G +P V +YNIL+NGLC +    EA +LL  M + G  C PD  S++
Sbjct: 34  EDARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 185 TVIQGFLVKNETDR 198
           TVI GF  + + D+
Sbjct: 93  TVINGFFKEGDLDK 106


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     + + +   +NG CK+  +  A       I+ G   D F Y+S I G C   
Sbjct: 145 EMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRK 204

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A ++F +M   G     V+Y  LI+  +E +    A++LL  ++ D    N+  Y+
Sbjct: 205 EVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYT 264

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID LC  G+  EA     Q+SE G+ P    Y +LI   C    + EA  LL  M E 
Sbjct: 265 VLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN 324

Query: 175 GCFPDSTSFNTVIQGFLVKN 194
           G  P+  ++N +I+GF  KN
Sbjct: 325 GLMPNVITYNALIKGFCKKN 344



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T+     N   Y   I G+ + ++ID A+           C +V  Y+ LI+ LC   
Sbjct: 215 EMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSG 274

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  EA+ LF +M   GI  +   Y  LI           A  LL+ +  +    N+  Y+
Sbjct: 275 QKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYN 334

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
            +I G C+     +A   L ++ E+ LVP ++TYN LI G C  G+
Sbjct: 335 ALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGI 379



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%)

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           KY+L  + Y+ ++  L R G  EE ++   ++ E  + P + T+N L+NG CK G ++EA
Sbjct: 115 KYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA 174

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            + +  + + GC PD  ++ + I G   + E D A    K+
Sbjct: 175 KQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKE 215


>gi|414587959|tpg|DAA38530.1| TPA: hypothetical protein ZEAMMB73_367044 [Zea mays]
          Length = 537

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 5/196 (2%)

Query: 14  VYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
            YG  + G+C+ R+ D A   + +   ++V + +++I G     +L    +L++ M ++G
Sbjct: 153 TYGFLLQGLCRTRQADEACTLLGRLPEVNVVMLNTVICGCLMEGKLARVTKLYEMMGSKG 212

Query: 71  ITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
             +++ TY+ L+H    K GRF S + +L  +E +    NI  YS ++   CR G W++A
Sbjct: 213 CPSDVHTYSILMH-GLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDA 271

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R  LDQ+  KG       YN +I  LCK G + +A +L+ +MK +GC PD  ++N +I+ 
Sbjct: 272 RAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLIKA 331

Query: 190 FLVKNETDRASSFLKK 205
              +   D + + L++
Sbjct: 332 LCKEGNVDWSMALLEE 347



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   DV  YS L++GLC   R    V + DKM        ++TY+ L+H          
Sbjct: 211 KGCPSDVHTYSILMHGLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDD 270

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A A+L  +    + +N + Y+ +I  LC+ G+ ++A + + ++  +G  P + TYN LI 
Sbjct: 271 ARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLIK 330

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            LCK+G +  +  LL +M  KG  P++ S+N +I
Sbjct: 331 ALCKEGNVDWSMALLEEMVTKGIKPNNFSYNMLI 364



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 31/209 (14%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +  G   DV  ++ L+  LC   R++EA  L D+M+ QG     +TY  L+     
Sbjct: 104 LDEMLLMGCAADVNTFNDLVLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLCR 163

Query: 88  KQGRFSAMALLQTLER-----------------------DKYEL--------NIEVYSLV 116
            +    A  LL  L                           YE+        ++  YS++
Sbjct: 164 TRQADEACTLLGRLPEVNVVMLNTVICGCLMEGKLARVTKLYEMMGSKGCPSDVHTYSIL 223

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           + GLC++GR+    + LD++ E    P ++TY+ L++  C+ GM  +A  +L QM  KG 
Sbjct: 224 MHGLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDARAMLDQMLAKGF 283

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +S  +N +I       + D+A+  +++
Sbjct: 284 SMNSQGYNGIIYALCKDGKLDQATRLVQE 312



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 11  NFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H Y I ++G+CK       +R +D   +     ++  YS+L++  C      +A  + 
Sbjct: 216 DVHTYSILMHGLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDARAML 275

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+A+G +     YN +I+   +      A  L+Q ++    + +I  Y+ +I  LC+ 
Sbjct: 276 DQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLIKALCKE 335

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-MIMEADKLL 168
           G  + +   L+++  KG+ P   +YN+LIN LCK G +I+E   L 
Sbjct: 336 GNVDWSMALLEEMVTKGIKPNNFSYNMLINELCKAGNVIIECSGLF 381



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 38/230 (16%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +G+    +C++     A+       + G   D  +Y  +I+ L    R+ EA  L D+M
Sbjct: 48  TFGVVARALCRLGRAGDALARLRGMARHGCVPDAVLYQIVIHALVVQGRVAEATMLLDEM 107

Query: 67  VAQGITAELVTYNPLIH---------------DNWEKQGRF-SAMA---LLQTLERDKY- 106
           +  G  A++ T+N L+                D    QG   SAM    LLQ L R +  
Sbjct: 108 LLMGCAADVNTFNDLVLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLCRTRQA 167

Query: 107 -----------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
                      E+N+ + + VI G    G+     K  + +  KG    V TY+IL++GL
Sbjct: 168 DEACTLLGRLPEVNVVMLNTVICGCLMEGKLARVTKLYEMMGSKGCPSDVHTYSILMHGL 227

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           CK G      ++L +M+E  C P+  +++T++  F      D A + L +
Sbjct: 228 CKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDARAMLDQ 277



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%)

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            +     +YN ++           A+ L + + RD        + +V   LCR+GR  +A
Sbjct: 6   AVAPSFRSYNIVLSTLARADCHADALLLYRRMLRDHVPPTTFTFGVVARALCRLGRAGDA 65

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             +L  ++  G VP  V Y I+I+ L  +G + EA  LL +M   GC  D  +FN ++
Sbjct: 66  LARLRGMARHGCVPDAVLYQIVIHALVVQGRVAEATMLLDEMLLMGCAADVNTFNDLV 123



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
            F +  +   LC   R  +A+     M   G   + V Y  +IH     QGR + A  LL
Sbjct: 46  TFTFGVVARALCRLGRAGDALARLRGMARHGCVPDAVLYQIVIH-ALVVQGRVAEATMLL 104

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       ++  ++ ++  LC + R  EA + +D++  +G +P  +TY  L+ GLC+ 
Sbjct: 105 DEMLLMGCAADVNTFNDLVLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLCRT 164

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
               EA  LL ++ E     +    NTVI G L++ +  R +  
Sbjct: 165 RQADEACTLLGRLPEV----NVVMLNTVICGCLMEGKLARVTKL 204



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
           Y+ +++ L   +   +A+ L+ +M+   +     T+  ++     + GR   A+A L+ +
Sbjct: 14  YNIVLSTLARADCHADALLLYRRMLRDHVPPTTFTFG-VVARALCRLGRAGDALARLRGM 72

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R     +  +Y +VI  L   GR  EA   LD++   G    V T+N L+  LC    +
Sbjct: 73  ARHGCVPDAVLYQIVIHALVVQGRVAEATMLLDEMLLMGCAADVNTFNDLVLRLCGLRRV 132

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA +L+ +M  +GC P + ++  ++QG     + D A + L +
Sbjct: 133 REAARLVDRMMTQGCMPSAMTYGFLLQGLCRTRQADEACTLLGR 176


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y   ING  K  ++D  + + I  +V  Y+S+I  LC    + +A+E+   MV  G+  +
Sbjct: 91  YSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 150

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            +TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  EARK  D
Sbjct: 151 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 210

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ ++  +  + 
Sbjct: 211 SMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQE 270

Query: 195 ETDRA 199
           + + A
Sbjct: 271 KVEEA 275



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 31/195 (15%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-------------------------- 62
           D  +++GI  DVF Y+ L+NGLC  NR +EA+EL                          
Sbjct: 41  DELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 63  ----FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
                DKM+ Q I+  +VTYN +I    + Q    AM +L T+ +     +   Y+ ++ 
Sbjct: 100 KEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 159

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P
Sbjct: 160 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 219

Query: 179 DSTSFNTVIQGFLVK 193
           D T++ T++QG+  K
Sbjct: 220 DITTYGTLLQGYATK 234



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +QR   N   Y   I  +CK + +D A       +K G+  D   Y+S+++G C+  +
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAM------------- 95
            KEA+    KM + G+  ++VTYN L+ D   K GR       F +M             
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLM-DYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 96  ----------------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                            LL  + R+    N  V+S+++    +  + EEA     ++ ++
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P  VTY  +I+ LCK G + +A     QM ++G  PDS  +N++I    + ++ ++A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 20  NGMC-KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG C + R+I DS  K+G+  D+  Y +L+ G  T   L E   L D MV  GI      
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           ++ L+    +++    AM +   + +     N   Y  VID LC+ GR E+A    +Q+ 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           ++GL P  + YN LI+ LC      +A++L ++M ++G    +  FN++I
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
           FD +T++  K +   YG  + G      +       D  ++ GI  + +V+S L+     
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAK 268

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
             +++EA+ +F KM  QG+    VTY  +I D   K GR   AM   + +  +    +  
Sbjct: 269 QEKVEEAMLVFSKMRQQGLNPNAVTYGTVI-DVLCKSGRVEDAMLYFEQMIDEGLRPDSI 327

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +I  LC   +WE+A +   ++ ++G+    + +N +I+  CK+G ++E+ KL   M
Sbjct: 328 VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLM 387

Query: 172 KEKGCFPD 179
              G  PD
Sbjct: 388 VRIGVKPD 395



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 17/149 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +V+ I +    K  +++ A+       ++G+  +   Y ++I+ LC   R+++A+  F
Sbjct: 255 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYF 314

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++M+ +G+  + + YN LIH     D WEK         L+ L+R    L+   ++ +ID
Sbjct: 315 EQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL----FLEMLDR-GICLSTIFFNSIID 369

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
             C+ GR  E+ K  D +   G+ P ++T
Sbjct: 370 SHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFN 184
           E+AR   D+L  +G +P V +YNIL+NGLC +    EA +LL  M + G  C PD  S++
Sbjct: 34  EDARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 185 TVIQGFLVKNETDR 198
           TVI GF  + + D+
Sbjct: 93  TVINGFFKEGDLDK 106


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 11/203 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +VY   I+   K R+++ A         KG+  D+F Y++LI   C      EA+ + 
Sbjct: 199 NIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQ 258

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM  +GI  ++V+YN LI+  + K+G+   AM +   + +D    N   Y+ +IDG C+
Sbjct: 259 DKMEREGINLDIVSYNSLIY-GFCKEGKMREAMRMFGEI-KDAIP-NHVTYTTLIDGYCK 315

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
              +EEA +  + +  KGL PGVVTYN ++  LC  G I +A+KLL +M E+    DS +
Sbjct: 316 ANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVT 375

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
            NT+I  +    + + A  F  K
Sbjct: 376 CNTLINAYCKIGDLNSALKFKTK 398



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 15  YGIRINGMCKIREIDSAIK-----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           Y   I G CK  ++  A++     K    +   Y++LI+G C  N  +EA+ L + MVA+
Sbjct: 273 YNSLIYGFCKEGKMREAMRMFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAK 332

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+   +VTYN ++           A  LL  +   K + +    + +I+  C++G    A
Sbjct: 333 GLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSA 392

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K   ++ E GL P   TY  LI+G CK   +  A +LL  M + G  P+  +++ ++  
Sbjct: 393 LKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDS 452

Query: 190 FLVKNETD 197
           +  K+ TD
Sbjct: 453 YCKKDNTD 460



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +++E++ + +       IN  CKI +++SA+K        G+  + F Y +LI+G C  +
Sbjct: 363 EMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTS 422

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+ A EL   M+  G +    TY+ ++    +K    + +AL        + LNI +Y 
Sbjct: 423 ELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYR 482

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  LC++ R E A K L  +  KG+    V Y  L     K G    A  +L +M  +
Sbjct: 483 ALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARR 542



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D    ++LIN  C    L  A++   KM+  G+T    TY  LIH   +     SA  LL
Sbjct: 372 DSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELL 431

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +    +  N   YS ++D  C+    +      D+   KG    +  Y  LI  LCK 
Sbjct: 432 FGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKI 491

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             I  A+KLL  M+ KG   DS  + ++   +     T+ AS  L++
Sbjct: 492 ERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEE 538



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +++ +MV  G+   +  YN LIH   + +    A  +L  +E      +I  Y+ +I   
Sbjct: 186 KVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALY 245

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G   EA    D++  +G+   +V+YN LI G CK+G + EA ++  ++K+    P+ 
Sbjct: 246 CKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA--IPNH 303

Query: 181 TSFNTVIQGFLVKNETDRA 199
            ++ T+I G+   NE + A
Sbjct: 304 VTYTTLIDGYCKANEFEEA 322



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F + +  F  N+  Y   ++  CK    D+ +        KG CL++ +Y +LI  LC  
Sbjct: 432 FGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKI 491

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++ A +L   M  +GI+ + V Y  L    W+     +A  +L+ + R +  + +++Y
Sbjct: 492 ERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARRRLMITVKIY 551



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL--IHDNWEKQGR----------- 91
           S+I+ L      K A ++ DKM  + I +       L  IHD+ E               
Sbjct: 83  SMIHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSLVRIHDDPEVNSHVLSWIVIHYAK 142

Query: 92  ----FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ + + +     + ++   +++++ L + G      K   ++ + G+VP +  
Sbjct: 143 SKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYV 202

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           YN LI+   K   +  A+ +L +M+ KG  PD  ++NT+I
Sbjct: 203 YNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLI 242


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCT 52
           FD    R F  +   Y I I  +C           +D  +K G    V  Y+ LI     
Sbjct: 154 FDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATIL 213

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA+ELFD++V++G+  +L TYN +I    ++     A+  ++ L       ++  
Sbjct: 214 EGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVS 273

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++++       RWE+  + +  +   G  P VVT++ILI+  C++G + EA  +L  MK
Sbjct: 274 YNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMK 333

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EKG  PDS S++ +I  F  +   D A  +L+K
Sbjct: 334 EKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 84/159 (52%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +G+  D++ Y+++I G+C       A++    + A+G   ++V+YN L+     K
Sbjct: 225 DELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNK 284

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                   L++ +     E N+  +S++I   CR GR  EA   L+ + EKGL P   +Y
Sbjct: 285 SRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSY 344

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           + LI+  CK+G +  A + L +M   GC PD  ++NT++
Sbjct: 345 DPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTIL 383



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I+  CK   +D AI+        G   D+  Y++++  LC F  
Sbjct: 332 MKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGC 391

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A+++F+K+   G    +  YN +    W    +  A+ ++  + R   + +   Y+ 
Sbjct: 392 ADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNS 451

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  +EA   L  +      P V+++NI++ G+CK   + E  +LL+ M EKG
Sbjct: 452 LISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKG 511

Query: 176 CFPDSTSFNTVIQG 189
           C P+ TS+  +I+G
Sbjct: 512 CLPNETSYVLLIEG 525



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 1/177 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++S + KG   DV + + LI G      LK+A+ + + +   G   ++ +YN +I    +
Sbjct: 85  LESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSK 143

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                SA  +   +    +  ++  Y+++I  LC  G+ E A + +D+L + G  P V+T
Sbjct: 144 ANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVIT 203

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y ILI     +G I EA +L  ++  +G  PD  ++N +I+G   +   DRA  F++
Sbjct: 204 YTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVR 260



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           +V  +S LI+  C   R++EAV + + M  +G+T +  +Y+PLI   + K+GR   A+  
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLI-SAFCKEGRLDLAIEY 363

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ +  D    +I  Y+ ++  LC+ G  + A    ++L E G  P V  YN + + L  
Sbjct: 364 LEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWS 423

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G  ++A +++ +M  KG  PD  ++N++I         D A   L
Sbjct: 424 CGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLL 469



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L  +  + + + Y   I G+CK    D A+        +G   DV  Y+ L+      +
Sbjct: 226 ELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKS 285

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           R ++   L   MV  G    +VT++ LI  ++ ++GR   A+ +L+ ++      +   Y
Sbjct: 286 RWEDGERLMKDMVLSGCEPNVVTHSILI-SSFCREGRVREAVNVLEVMKEKGLTPDSYSY 344

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I   C+ GR + A + L+++   G +P +V YN ++  LCK G    A  +  ++ E
Sbjct: 345 DPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDE 404

Query: 174 KGCFPDSTSFNTVIQGF 190
            GC P   ++NT+    
Sbjct: 405 VGCPPTVRAYNTMFSAL 421



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V  Y+++ + L +     +A+E+  +M+ +GI  + +TYN LI           A+ LL 
Sbjct: 411 VRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLV 470

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +E  +++  +  +++V+ G+C+  R  E  + L  + EKG +P   +Y +LI G+   G
Sbjct: 471 DMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAG 530

Query: 160 MIMEADKLLVQMKEKGCFPDSTS 182
              EA +L   +   G     +S
Sbjct: 531 WRAEAMELANSLYRLGVISGDSS 553



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   I+KGI  D   Y+SLI+ LC    + EA+ L   M A      ++++N ++    +
Sbjct: 434 ISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCK 493

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
               F  + LL T+       N   Y L+I+G+   G   EA +  + L   G++ G
Sbjct: 494 AHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISG 550



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G+  E+   L+ +  KG  P VV    LI G      + +A +++  ++  G  PD 
Sbjct: 73  CRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDV 131

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            S+N +I GF   N+ D A+    +
Sbjct: 132 YSYNAMISGFSKANQIDSANQVFDR 156


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +K+GIC D+  ++ LI+ LC    ++E+ +LF K++ +G+   L T+N  I     K
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A  LL+++  +    ++  Y+ +I G C+  +  EA   L ++   G+ P   TY
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           N +ING CK GM+  ADK+L     KG  PD  +++++I G     + +RA +   + M
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IR+   C        +R +++   +G   +   Y ++I+G    N   EA  LF
Sbjct: 145 DVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ QGI  +++T+N LIH   +K     +  L   + +     N+  +++ I GLCR 
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA + L+ +  +GL P V++YN LI G CK   ++EA+  L +M   G  P+  ++
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           NT+I GF        A   L+  M
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAM 348



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK   + +A K       KG   D F YSSLINGLC    +  A+ +F
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            + + +G    ++ YN L+     KQG    A+ L++ +       +I  Y+LV++GLC+
Sbjct: 380 YEAMEKGFKHSIILYNTLV-KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G   +A   L+    KG +P + T+N LI+G CK+  + +A ++L  M   G  PD  +
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVIT 498

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           +NT++ G     + D      K
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFK 520



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIR-------EIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E     +   Y + +NG+CK+         ++ AI KG   D+F +++LI+G C   
Sbjct: 416 DMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQR 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A+E+ D M++ GIT +++TYN L++   + +   + +   + +       NI  Y+
Sbjct: 476 NMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYN 535

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+  C+  +  EA +   ++  +GL P +VT   LI GLC  G + +A +L V ++++
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 175 GCFPDSTS-FNTVIQGFLVKNETDRASSFLKK 205
             F  ST+ FN +I  F  K     A     K
Sbjct: 596 YKFSYSTAIFNIMINAFCXKLNVSMAEKLFHK 627



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I G+C+   ID A       + +G+  DV  Y++LI G C  ++L EA    
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 64  DKMVAQGITAELVTYNPLIH-----------DNWEKQGRFS------------------- 93
            KMV  G+     TYN +I+           D   +   F                    
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 94  -----AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                AMA+        ++ +I +Y+ ++ GL + G   +A + +  + E G  P + TY
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           N+++NGLCK G + +A+ +L     KGC PD  +FNT+I G+  +   D+A   L
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 35/194 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G+C ++F ++  I GLC    + EA  L + +V++G+T ++++YN LI    +    
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A   L  +     E N   Y+ +I+G C+ G  + A K L     KG +P   TY+ L
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSL 362

Query: 152 INGLC-----------------------------------KKGMIMEADKLLVQMKEKGC 176
           INGLC                                   K+G++++A +L+  M E GC
Sbjct: 363 INGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGC 422

Query: 177 FPDSTSFNTVIQGF 190
            PD  ++N V+ G 
Sbjct: 423 SPDIWTYNLVVNGL 436



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ ++  +   C   R   A+ L + M  QG     V+Y  +I   +++  +  A
Sbjct: 141 GIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEA 200

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L   + +     +I  ++ +I  LC+ G  +E+ K   ++ ++G+ P + T+NI I G
Sbjct: 201 YHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQG 260

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+KG I EA +LL  +  +G  PD  S+NT+I GF   ++   A  +L K
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHK 311



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK R++D+ +       +KG   ++  Y+ LI   C   ++ EA+ELF +M
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIEVYSLVIDGLCRVGR 125
             +G+T ++VT   LI           A  L  T+E++ K+  +  +++++I+  C    
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLN 617

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A K   ++      P   TY ++I+  CK G I  A   L++   KG  P  T+   
Sbjct: 618 VSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 186 VIQGFLVKNETDRA 199
           V+    V +    A
Sbjct: 678 VLNCLCVTHRLSEA 691



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 82  IHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           I  ++ ++G+   A+ + + ++    E +++ Y+ +++ L   G + +A K   ++ + G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           + P V T+ I +   C  G    A +LL  M  +GC  ++ S+  VI GF  +N
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKEN 195



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           + +DS + +G      VY  ++       +++EAV +F++M        + +YN +++  
Sbjct: 68  KNVDSKMLEG------VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNIL 121

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
            E  G FS A  +   ++      ++  +++ +   C  GR   A + L+ +  +G    
Sbjct: 122 VE-YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFN 180

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            V+Y  +I+G  K+   +EA  L  +M ++G  PD  +FN +I     K     +     
Sbjct: 181 AVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFS 240

Query: 205 KNM 207
           K M
Sbjct: 241 KVM 243


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           Y   ING  K  ++D  + + I  +V  Y+S+I  LC    + +A+E+   MV  G+  +
Sbjct: 91  YSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 150

Query: 75  LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            +TYN ++H          A+  L+ +  D  E ++  Y+ ++D LC+ GR  EARK  D
Sbjct: 151 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 210

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            ++++GL P + TY  L+ G   KG ++E   LL  M   G  P+   F+ ++  +  + 
Sbjct: 211 SMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQE 270

Query: 195 ETDRA 199
           + + A
Sbjct: 271 KVEEA 275



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 31/195 (15%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-------------------------- 62
           D  +++GI  DVF Y+ L+NGLC  NR +EA+EL                          
Sbjct: 41  DELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 63  ----FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
                DKM+ Q I+  +VTYN +I    + Q    AM +L T+ +     +   Y+ ++ 
Sbjct: 100 KEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 159

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G+ +EA   L ++   G+ P VVTYN L++ LCK G   EA K+   M ++G  P
Sbjct: 160 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 219

Query: 179 DSTSFNTVIQGFLVK 193
           D T++ T++QG+  K
Sbjct: 220 DITTYGTLLQGYATK 234



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 17/209 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I+ +CK   ++ A       I +G+  D  VY+SLI+ LC F++
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A ELF +M+ +GI    + +N +I D+  K+GR         +E  K   ++ V   
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSII-DSHCKEGR--------VIESGKL-FDLMVRIG 391

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V   +  +GR +EA+      S  GLVP   TY ++   +  +G++ E D+L + M++ G
Sbjct: 392 VKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 451

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           C  DS   N +++  L + E  RA ++L 
Sbjct: 452 CTVDSGMLNFIVRELLQRGEITRAGTYLS 480



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 44/240 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +QR   N   Y   I  +CK + +D A       +K G+  D   Y+S+++G C+  +
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAM------------- 95
            KEA+    KM + G+  ++VTYN L+ D   K GR       F +M             
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLM-DYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 96  ----------------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                            LL  + R+    N  V+S+++    +  + EEA     ++ ++
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P  VTY  +I+ LCK G + +A     QM ++G  PDS  +N++I    + ++ ++A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 20  NGMC-KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG C + R+I DS  K+G+  D+  Y +L+ G  T   L E   L D MV  GI      
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           ++ L+    +++    AM +   + +     N   Y  VID LC+ GR E+A    +Q+ 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           ++GL P  + YN LI+ LC      +A++L ++M ++G    +  FN++I
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFN 184
           E+AR   D+L  +G +P V +YNIL+NGLC +    EA +LL  M + G  C PD  S++
Sbjct: 34  EDARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 185 TVIQGFLVKNETDR 198
           TVI GF  + + D+
Sbjct: 93  TVINGFFKEGDLDK 106


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +K+GIC D+  ++ LI+ LC    ++E+ +LF K++ +G+   L T+N  I     K
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A  LL+++  +    ++  Y+ +I G C+  +  EA   L ++   G+ P   TY
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           N +ING CK GM+  ADK+L     KG  PD  +++++I G     + +RA +   + M
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IR+   C        +R +++   +G   +   Y ++I+G    N   EA  LF
Sbjct: 145 DVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ QGI  +++T+N LIH   +K     +  L   + +     N+  +++ I GLCR 
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA + L+ +  +GL P V++YN LI G CK   ++EA+  L +M   G  P+  ++
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
           NT+I GF        A   L+  M
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAM 348



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CK   + +A K       KG   D F YSSLINGLC    +  A+ +F
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            + + +G    ++ YN L+     KQG    A+ L++ +       +I  Y+LV++GLC+
Sbjct: 380 YEAMEKGFKHSIILYNTLV-KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G   +A   L+    KG +P + T+N LI+G CK+  + +A ++L  M   G  PD  +
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVIT 498

Query: 183 FNTVIQGFLVKNETDRASSFLK 204
           +NT++ G     + D      K
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFK 520



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIR-------EIDSAIKKGICLDVFVYSSLINGLCTFN 54
           D+ E     +   Y + +NG+CK+         ++ AI KG   D+F +++LI+G C   
Sbjct: 416 DMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQR 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + +A+E+ D M++ GIT +++TYN L++   + +   + +   + +       NI  Y+
Sbjct: 476 NMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYN 535

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+  C+  +  EA +   ++  +GL P +VT   LI GLC  G + +A +L V ++++
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 175 GCFPDSTS-FNTVIQGFLVKNETDRASSFLKK 205
             F  ST+ FN +I  F  K     A     K
Sbjct: 596 YKFSYSTAIFNIMINAFCEKLNVSMAEKLFHK 627



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I I G+C+   ID A       + +G+  DV  Y++LI G C  ++L EA    
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 64  DKMVAQGITAELVTYNPLIH-----------DNWEKQGRFS------------------- 93
            KMV  G+     TYN +I+           D   +   F                    
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 94  -----AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                AMA+        ++ +I +Y+ ++ GL + G   +A + +  + E G  P + TY
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           N+++NGLCK G + +A+ +L     KGC PD  +FNT+I G+  +   D+A   L
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 35/194 (18%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+G+C ++F ++  I GLC    + EA  L + +V++G+T ++++YN LI    +    
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A   L  +     E N   Y+ +I+G C+ G  + A K L     KG +P   TY+ L
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSL 362

Query: 152 INGLC-----------------------------------KKGMIMEADKLLVQMKEKGC 176
           INGLC                                   K+G++++A +L+  M E GC
Sbjct: 363 INGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGC 422

Query: 177 FPDSTSFNTVIQGF 190
            PD  ++N V+ G 
Sbjct: 423 SPDIWTYNLVVNGL 436



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ ++  +   C   R   A+ L + M  QG     V+Y  +I   +++  +  A
Sbjct: 141 GIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEA 200

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L   + +     +I  ++ +I  LC+ G  +E+ K   ++ ++G+ P + T+NI I G
Sbjct: 201 YHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQG 260

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+KG I EA +LL  +  +G  PD  S+NT+I GF   ++   A  +L K
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHK 311



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK R++D+ +       +KG   ++  Y+ LI   C   ++ EA+ELF +M
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIEVYSLVIDGLCRVGR 125
             +G+T ++VT   LI           A  L  T+E++ K+  +  +++++I+  C    
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLN 617

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A K   ++      P   TY ++I+  CK G I  A   L++   KG  P  T+   
Sbjct: 618 VSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 186 VIQGFLVKNETDRA 199
           V+    V +    A
Sbjct: 678 VLNCLCVTHRLSEA 691



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 82  IHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           I  ++ ++G+   A+ + + ++    E +++ Y+ +++ L   G + +A K   ++ + G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           + P V T+ I +   C  G    A +LL  M  +GC  ++ S+  VI GF  +N
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKEN 195



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           + +DS + +G      VY  ++       +++EAV +F++M        + +YN +++  
Sbjct: 68  KNVDSKMLEG------VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNIL 121

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
            E  G FS A  +   ++      ++  +++ +   C  GR   A + L+ +  +G    
Sbjct: 122 VE-YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFN 180

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            V+Y  +I+G  K+   +EA  L  +M ++G  PD  +FN +I     K     +     
Sbjct: 181 AVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFS 240

Query: 205 KNM 207
           K M
Sbjct: 241 KVM 243


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ FK +     I + G+C    +D+A+K       KG  +D   Y+++I+GLC   R
Sbjct: 290 MVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGR 349

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA +L  +M  + +  +  TYN ++    + +G+   A      +    ++ ++   +
Sbjct: 350 FEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCN 409

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++ GLC  G  + A K  +    KG     VTYN +I+GLCK+G   EA  LL +M+EK
Sbjct: 410 ILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEK 469

Query: 175 -GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  PD T++NT+I G+  + + ++A  F  K
Sbjct: 470 NGLVPDQTTYNTIILGYCREGQVEKAFQFRNK 501



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 18/198 (9%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+ FK +     I + G+C    +D+A+K       KG  +D   Y+++I+GLC   R
Sbjct: 396 MVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGR 455

Query: 56  LKEAVELFDKMVAQ-GITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELN 109
            +EA +L  +M  + G+  +  TYN +I         EK  +F    + ++ + D +  N
Sbjct: 456 FEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCN 515

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I     ++ GLCR G   +A K  +    KG     VTYN +I+GLCK+G   EA  LL 
Sbjct: 516 I-----LLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLA 570

Query: 170 QMKEKGCFPDSTSFNTVI 187
           +MKEK   PD  ++N ++
Sbjct: 571 EMKEKKLGPDCYTYNAIL 588



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++K    D+F  + L+ GLCT   L  A++LF+  +++G   + VTYN +I     K+GR
Sbjct: 397 VEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTII-SGLCKEGR 455

Query: 92  FS-AMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           F  A  LL  +E ++    +   Y+ +I G CR G+ E+A +  +++ EK   P + T N
Sbjct: 456 FEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCN 515

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           IL+ GLC++GM+++A KL      KG   D+ ++NT+I G 
Sbjct: 516 ILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGL 556



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 10/186 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G C+  +++ A       ++K    D+F  + L+ GLCT   L  A++LF+  
Sbjct: 266 TYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTW 325

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRV-G 124
           +++G   + VTYN +I     K+GRF  A  LL  +E  K   +   Y+ ++  L    G
Sbjct: 326 ISKGKAIDAVTYNTII-SGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEG 384

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + E+A +  +++ EK   P + T NIL+ GLC +GM+  A KL      KG   D+ ++N
Sbjct: 385 QVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYN 444

Query: 185 TVIQGF 190
           T+I G 
Sbjct: 445 TIISGL 450



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           I +++  ++ G+      Y+++I+G C   ++++A +  +KMV +    +L T N L+  
Sbjct: 249 IDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRG 308

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +    +A+ L  T       ++   Y+ +I GLC+ GR+EEA   L ++ EK L P 
Sbjct: 309 LCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPD 368

Query: 145 VVTYNILINGLC-KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             TYN ++  L   +G + +A +   +M EK   PD  + N +++G   +   D A
Sbjct: 369 CYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNA 424



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERD 104
           LC   +  ++++  ++++  G+    +TYN +IH        EK  +F    + ++ + D
Sbjct: 239 LCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPD 298

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
            +  NI     ++ GLC  G  + A K  +    KG     VTYN +I+GLCK+G   EA
Sbjct: 299 LFTCNI-----LLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 353

Query: 165 DKLLVQMKEKGCFPDSTSFNTVI 187
             LL +M+EK   PD  ++N ++
Sbjct: 354 FDLLAEMEEKKLGPDCYTYNAIL 376



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGR 91
           K  +CL   +++++I      N+L EA+ L  KM       +  +YN ++   W  + G+
Sbjct: 186 KPSVCLSKAIFTNVIK-FGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGK 244

Query: 92  F--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
              S   L + LE       I  Y+ +I G CR G+ E+A +  +++ EK   P + T N
Sbjct: 245 TDQSIDKLNELLESGLVPHQI-TYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCN 303

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           IL+ GLC +GM+  A KL      KG   D+ ++NT+I G 
Sbjct: 304 ILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGL 344



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S  KK   L V + +S I    + NR   A ++F++M    +   L+T N LI+      
Sbjct: 126 SPFKKVQSLRVILDTS-IGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYP 184

Query: 90  GRFS----------------------AMALLQTLERDKYELNIEVYSLVID--GLCRVGR 125
            + S                      A+ L+  ++      +   Y+ ++D   LCR G+
Sbjct: 185 SKPSVCLSKAIFTNVIKFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGK 244

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +++  KL++L E GLVP  +TYN +I+G C++G + +A +   +M EK   PD  + N 
Sbjct: 245 TDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNI 304

Query: 186 VIQGFLVKNETDRA 199
           +++G   +   D A
Sbjct: 305 LLRGLCTEGMLDNA 318


>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
 gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
          Length = 559

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H +   +  +C+    D A       + +G    V  +S+++  LC   R+ +A+E+ 
Sbjct: 177 DAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVL 236

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M   G    + TYN L+       GR   A+ LL+ L+      +I  +++V+DG C+
Sbjct: 237 DAMCGLGCEPTIRTYNSLV-GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 295

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---KEKGCFPD 179
           VGR EEA          GL P   TYN L+NG CK+G  ++A  LL++M    +  C PD
Sbjct: 296 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 355

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
            TSF  V+   L   ET  A    K+
Sbjct: 356 KTSFGIVLTALLRAGETSAAWQTYKR 381



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-VAQGITAELVTYNPLI 82
           +++ +D   +    L V  Y+ +++ L        AV LF  M VA    +       L 
Sbjct: 130 RVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMPVAPDAHSFATAVQCLC 189

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                 + +   +AL + + R  +  ++  +S V+  LC+ GR  +A + LD +   G  
Sbjct: 190 RQGAPDEAK---LALDEMVARG-FRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLGCE 245

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + TYN L+ GLC  G + EA +LL ++K+    PD  +F  V+ GF     T+ A++ 
Sbjct: 246 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 305



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E V++ D +        +  YN ++          +A+AL + +       +   ++ 
Sbjct: 127 VEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 183

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +  LCR G  +EA+  LD++  +G  P V T++ ++  LCK+G + +A ++L  M   G
Sbjct: 184 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLG 243

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P   ++N+++ G       + A   LKK
Sbjct: 244 CEPTIRTYNSLVGGLCYVGRLEEALELLKK 273



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 50/215 (23%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
               Y   + G+C +  ++ A++         +  D++ ++ +++G C   R +EA  +F
Sbjct: 247 TIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIF 306

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL------------------------- 98
              +  G++    TYN L++ + ++     A ALL                         
Sbjct: 307 HDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 366

Query: 99  ----------QT---LERDKYELNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKG 140
                     QT   +ER  +E++      +  GLCR          +A +   ++   G
Sbjct: 367 LRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFAKVVASG 426

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             P   TY ++   L + G +  A  LL  M  KG
Sbjct: 427 HEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKG 461



 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT-----FNRLKEAVEL 62
           +GI +  + +  E  +A        + G  +D     +L  GLC       + L +A E+
Sbjct: 359 FGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEV 418

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC 121
           F K+VA G      TY  L+     + G   +A+ALL+ + R  Y L    Y+ V+  LC
Sbjct: 419 FAKVVASGHEPVSYTYC-LMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALC 477

Query: 122 RVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKG 159
             GR  +A + L   +  +  VPG   +  L+  L ++G
Sbjct: 478 DRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQG 516


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN  CK   +  A++       +G   +V+ Y++L+ G C   ++ +A+ L +KM A G+
Sbjct: 331 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGV 390

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + VTYN LI          SA  LL+ +E D    +   Y+ +I+ LC+ GR ++A  
Sbjct: 391 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 450

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D L  +G+ P  VT+N LINGLCK G    A K L +M   GC PD+ ++++ I+   
Sbjct: 451 LFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 510

Query: 192 VKNETDRASSFL 203
               +    SF+
Sbjct: 511 KMKGSQEGLSFI 522



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 11/205 (5%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ + + +   I G C+  ++D A         +G   DV  Y++LI GLC   R+ EAV
Sbjct: 184 WRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAV 243

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ELF +M       ++  Y  L+      +     + +L+ ++   +  +   Y+ V+D  
Sbjct: 244 ELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFR 299

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR  + +EA + L ++ EKGL P VVT   +IN  CK+G + +A ++L  MK +GC P+ 
Sbjct: 300 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 359

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N ++QGF  + +  +A + L K
Sbjct: 360 WTYNALVQGFCNEGKVHKAMTLLNK 384



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   IN +CK    D A         +GI  +   ++SLINGLC   +   A +  +K
Sbjct: 430 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 489

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ G T +  TY+  I    + +G    ++ +  + +   + +   Y++VI  L +   
Sbjct: 490 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 549

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +    +   ++   G  P VVTY   +   C +G + EA+ +L++M + G   D+ ++NT
Sbjct: 550 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 609

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ G     +TD A S LK+
Sbjct: 610 LMDGHASIGQTDHAVSILKQ 629



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E  ++ +   Y   ++  C+ R+   A        +KG+   V   +++IN  C   R
Sbjct: 280 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 339

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ + + M  +G    + TYN L+     +     AM LL  +       +   Y+L
Sbjct: 340 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C  G  E A + L  +   GL+    TYN LIN LCK G   +A  L   ++ +G
Sbjct: 400 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 459

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++ +FN++I G     + D A  FL+K
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEK 489



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 9/191 (4%)

Query: 9   KGNFHVYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G C   K+ +  + + K    G+  D   Y+ LI G C    ++ A  
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 415

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGL 120
           L   M   G+ A+  TYN LI +   K GR   A +L  +LE    + N   ++ +I+GL
Sbjct: 416 LLRLMEGDGLIADQYTYNALI-NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 474

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+ + A K L+++   G  P   TY+  I  LCK     E    + +M +K   P +
Sbjct: 475 CKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPST 534

Query: 181 TSFNTVIQGFL 191
            ++  VI   L
Sbjct: 535 VNYTIVIHKLL 545



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMALLQTL 101
           ++SL+  L  F     A+ LF  M      A    TYN +I     +     A+  L  +
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R  +  +   ++ +I G CR  + + AR   D++  +G    VV+Y  LI GLC+ G I
Sbjct: 180 VRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            EA +L  +M +    PD   +  +++G 
Sbjct: 240 DEAVELFGEMDQ----PDMHMYAALVKGL 264



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 60/264 (22%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  E R  K N   +   ING+CK  + D A       +  G   D + YSS I  LC 
Sbjct: 452 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD------------NWEK------------ 88
               +E +    +M+ + +    V Y  +IH              W +            
Sbjct: 512 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 571

Query: 89  ----------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                     +GR + A  +L  + ++   ++   Y+ ++DG   +G+ + A   L Q++
Sbjct: 572 YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT 631

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-----------------MKEKGCFPDS 180
               VP   TY IL+  L +  ++ +   L                    MK+    P+S
Sbjct: 632 SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNS 691

Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
            +++++++GF     T+ A+S + 
Sbjct: 692 GTYSSILEGFSEDGRTEEATSLVS 715



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN------------- 79
           K G+ +D   Y++L++G  +  +   AV +  +M +        TY              
Sbjct: 597 KNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVE 656

Query: 80  ---PLIHDN-WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
              PL     W+         L   ++++++  N   YS +++G    GR EEA   +  
Sbjct: 657 DVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSL 716

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E  +      Y  L+   CK    ++A  L+  M + G  P   S+  ++ G + + +
Sbjct: 717 MKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQ 776

Query: 196 TDRA 199
           TD+A
Sbjct: 777 TDKA 780



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L +   LFD M          TY+ ++ + + + GR   A +L+  ++ D   LN ++Y+
Sbjct: 672 LTDVFGLFDVMKKNEFLPNSGTYSSIL-EGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 730

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++   C+  R+ +A   +  + + G +P +++Y  L++GL  +G   +A ++ +  + K
Sbjct: 731 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWK 790

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
              PD   +  +I G + K  +D
Sbjct: 791 DYSPDEIVWKVIIDGLIKKGHSD 813



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ VI  LCR      A + L  +   G  P   T+N LI G C+   +  A  L  +
Sbjct: 154 PTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDK 213

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           M  +G   D  S+ T+I+G       D A
Sbjct: 214 MPLRGFAQDVVSYATLIEGLCEAGRIDEA 242



 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P   TYN +I  LC++  +  A + L  M   G  PD+ +FN++I G+   N+ D A  
Sbjct: 150 APTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARD 209

Query: 202 FLKK 205
              K
Sbjct: 210 LFDK 213



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 65/147 (44%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            YSS++ G     R +EA  L   M    I+     Y  L+    + +    A  L+ ++
Sbjct: 693 TYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSM 752

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            +  +   +  Y  ++ GL   G+ ++A++       K   P  + + ++I+GL KKG  
Sbjct: 753 IQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS 812

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             + ++++ ++   C P   ++  + +
Sbjct: 813 DISREMIIMLERMNCRPSHQTYAMLTE 839


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 1/174 (0%)

Query: 18  RINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           R N +   RE+ +  ++ GIC  V  Y+++++  C    ++EA++L  +M A G +   V
Sbjct: 179 RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV 238

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           TYN L++          A  L+Q + R   E+++  Y  +I G C  G+ EEA +  +++
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +G VP VVTYN ++ GLCK G + +A KLL  M  K   PD  S+NT+I G+
Sbjct: 299 LSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY 352



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+     + + + Y   I G C+  +I+ A       + +G    V  Y++++ GLC + 
Sbjct: 262 DMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWG 321

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ +A +L D MV + +  +LV+YN LI+  + + G    A  L   L       ++  Y
Sbjct: 322 RVSDARKLLDVMVNKNLMPDLVSYNTLIY-GYTRLGNIGEAFLLFAELRYRSLAPSVVTY 380

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDGLCR+G  + A +  D++ + G  P V T+   + G CK G +  A +L  +M  
Sbjct: 381 NTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLN 440

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G  PD  ++ T I G L   +  +A
Sbjct: 441 RGLQPDRFAYITRIVGELKLGDPSKA 466



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C++ ++D A       IK G   DVF +++ + G C    L  A ELFD+M+
Sbjct: 380 YNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEML 439

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  +   Y   I    +      A  + + +    +  ++  Y++ IDGL ++G  +
Sbjct: 440 NRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 499

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + + ++   GLVP  VTY  +I+     G + +A  L ++M  KG FP   ++  +I
Sbjct: 500 EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLI 559

Query: 188 QGFLVK 193
             + V+
Sbjct: 560 HSYAVR 565



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAIKK----GICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y + I+G+ K+   +E    +KK    G+  D   Y+S+I+      
Sbjct: 472 EMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAG 531

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEV 112
            L++A  LF +M+++GI   +VTY  LIH ++  +GR   +A+L   E  +     N+  
Sbjct: 532 HLRKARALFLEMLSKGIFPSVVTYTVLIH-SYAVRGRLK-LAILHFFEMHEKGVHPNVIT 589

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I+GLC+V + ++A     ++  KG+ P   TY ILIN  C  G   EA +L   M 
Sbjct: 590 YNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDML 649

Query: 173 EKGCFPDSTSFNTVIQ 188
           ++   PDS +  ++++
Sbjct: 650 DREIQPDSCTHRSLLK 665



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%)

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           AR+  + + E G+ P VVTYN +++  CKKGM+ EA +LL QM+  GC P+  ++N ++ 
Sbjct: 186 AREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVN 245

Query: 189 GFLVKNETDRASSFLK 204
           G     E ++A   ++
Sbjct: 246 GLSHSGEMEQAKELIQ 261



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 15/153 (9%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE---- 111
           L++ + +F KMV++G+  ++   N ++    ++            + R+ Y + +E    
Sbjct: 147 LEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNID-------VAREVYNVMVECGIC 199

Query: 112 ----VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
                Y+ ++D  C+ G  +EA + L Q+   G  P  VTYN+L+NGL   G + +A +L
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKEL 259

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +  M   G      +++ +I+G+  K + + AS
Sbjct: 260 IQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEAS 292



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F++ E+    N   Y   ING+CK+R++D A         KGI  + + Y+ LIN  C  
Sbjct: 576 FEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNL 635

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLI 82
              +EA+ L+  M+ + I  +  T+  L+
Sbjct: 636 GHWQEALRLYKDMLDREIQPDSCTHRSLL 664


>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
          Length = 496

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 17/219 (7%)

Query: 2   DLTEQRFK----GNFHVYGIRINGMCKIREIDSAIK------KGICLDV----FVYSSLI 47
           DL + R K     N  VY I +    K  E+++A K      +  C DV      YS+LI
Sbjct: 168 DLRDPRNKYLPRPNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLI 227

Query: 48  NGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
            GLC   ++KEA ELF++M+ +  I  + + YN +I D + +QG+   A A+   + +++
Sbjct: 228 GGLCRGGKMKEAFELFEEMIEKDRIVPDQLLYNVII-DGFCRQGQVDKARAIFGFMRKNE 286

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E N   Y+ +I+G C+    E AR   +++   G+ P  V+Y  LI  LC+ G + E  
Sbjct: 287 CEPNTFNYATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGI 346

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            L+++MKEKGC  D  ++N VI+G      T  A   L+
Sbjct: 347 GLVLEMKEKGCRADVVTYNLVIEGLCKDGRTVEAMGLLE 385



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 9/198 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK  +I++A          G+  D   Y++LI  LC    + E + L  +M 
Sbjct: 294 YATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMK 353

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G  A++VTYN L+ +   K GR   AM LL+++  +  +LN+  Y ++++ LC  G  
Sbjct: 354 EKGCRADVVTYN-LVIEGLCKDGRTVEAMGLLESVPLEGVKLNVASYRILMNCLCSRGEM 412

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L  +  +G +P     N L+ GLC  G I +A   L  + + G  P+   +  +
Sbjct: 413 DRAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEPRCWERL 472

Query: 187 IQGFLVKNETDRASSFLK 204
           ++    + +  R++  L+
Sbjct: 473 VESVCRERKQRRSTDLLE 490



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD---NWEKQGR 91
            +CLD  V S   +G+   N L    +L D             YN L+     N E +  
Sbjct: 146 AVCLDRLVSSRGCHGV--LNEL--LADLRDPRNKYLPRPNTCVYNILVKHYVKNGELETA 201

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNI 150
           F  +  ++       + N+  YS +I GLCR G+ +EA +  +++ EK  +VP  + YN+
Sbjct: 202 FKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDRIVPDQLLYNV 261

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +I+G C++G + +A  +   M++  C P++ ++ T+I G   K + + A S  ++
Sbjct: 262 IIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLINGHCKKADIEAARSVFEE 316


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 32/234 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGI-CLDVFVYSSLINGLCTFN 54
           ++  +  + N + Y I ++G+CK      +R ++  ++ G+   DV  Y+SL++  C+  
Sbjct: 339 EMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKG 398

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
               A  + D+M  +G    L TYN L+  +  K GR + +  LL+ +    Y L+    
Sbjct: 399 NTTAANRILDEMAQKGCAPNLFTYNVLLQ-SLLKAGRTTEVERLLERMSEKGYSLDTASC 457

Query: 114 SLVIDGLCRV-----------GRWEEARKKLDQLS------------EKGLVPGVVTYNI 150
           +++IDGLCR            G W E R  L +L              K  +P  +TY+ 
Sbjct: 458 NIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYST 517

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           L+N LCK+G   EA K LV+M  K   PDS  ++T I G+ +  +T  A   L+
Sbjct: 518 LMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLR 571



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS+I K    D   YS+L+N LC   R  EA +   +M+ + I+ + V Y+  IH  +  
Sbjct: 501 DSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIH-GYCM 559

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G+ S A+ +L+ +E+     +   Y+L+I G     + +E  K + ++ EKG+   V+T
Sbjct: 560 HGKTSLAIKVLRDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMT 619

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN LI   C +GM+ +A  LL +M +    P+ TSF  +I+ F
Sbjct: 620 YNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIKAF 662



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 13/215 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGIC-LDVFVYSSLINGLC 51
           +  Q    N   +  RI+ +CK            ++  A ++G+   D   +  +++G C
Sbjct: 231 MRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFC 290

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
               + EA  L D M   G   ++ +YN  +     K GR   A  LL  +  +  + N 
Sbjct: 291 DAGMVDEATVLVDIMRCGGFLRKVESYNRWL-SGLVKNGRVGEAQELLSEMAHEGVQPNS 349

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y++++DGLC+ G+  + R+  D +    + P VVTY  L++  C KG    A+++L +
Sbjct: 350 YTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDE 409

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M +KGC P+  ++N ++Q  L    T      L++
Sbjct: 410 MAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLER 444



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 14/171 (8%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G   DVF  ++L+  L    R+  A  +FD M A+   +     + ++   + + GR + 
Sbjct: 138 GATPDVFTRNALLEALSAAGRMDLARRVFDAMPARNEFS-----SGILARGYCRAGRSAD 192

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+A+L  +     E+N+ V + V+ G CR GR +EA + +D++  +GL P VVT+N  I+
Sbjct: 193 ALAVLDAMP----EMNLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRIS 248

Query: 154 GLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVIQGFLVKNETDRAS 200
            LCK G ++EA ++   M+E        PD  +F+ ++ GF      D A+
Sbjct: 249 ALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEAT 299



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 23/209 (11%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            H Y  + N     R +D   +KG   ++F Y+ L+  L    R  E   L ++M  +G 
Sbjct: 391 LHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGY 450

Query: 72  TAELVTYNPLIH---------------DNWEKQGRF-------SAMALLQTLERDKYELN 109
           + +  + N +I                D    +GR        S ++L+      K  L 
Sbjct: 451 SLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLP 510

Query: 110 IEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
             + YS +++ LC+ GR++EA+KKL ++  K + P  V Y+  I+G C  G    A K+L
Sbjct: 511 DRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVL 570

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             M+++ C P + S+N +I GF  K ++D
Sbjct: 571 RDMEKRSCNPSTRSYNLLIWGFQEKQKSD 599



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +N +CK    D A       I K I  D  +Y + I+G C   +   A+++   M
Sbjct: 514 TYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDM 573

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +       +YN LI    EKQ     + L+  ++      N+  Y+ +I   C  G  
Sbjct: 574 EKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMV 633

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +A   LD++ +  +VP V ++ +LI   CK      A ++ 
Sbjct: 634 NKAMPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVF 675



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 1/158 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI  +V  Y+SLI   C    + +A+ L D+M+   I   + ++  LI   + K   F
Sbjct: 610 EKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIK-AFCKTADF 668

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA   +  +          +Y L+   L    RW EA+  L+   E  +      Y  +I
Sbjct: 669 SAAQRVFDVALSTCGQKEVLYCLMCTELSTYARWIEAKNILETALEMRISIQSFPYKRII 728

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            GLC       A  LL     KG   D  +F  VI   
Sbjct: 729 AGLCDVSEADHAHSLLKLFIAKGYSFDPATFMPVIDAL 766


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 46/242 (19%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  N   Y I I+G+CK R++D AI        K I  DV  Y +LI+GL    R+KEA 
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAY 260

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKY-ELNIEVYSLVID 118
           +LF++  A+G    +VTYN +I D   K GR  +A+ L   + R+ + + ++  YS +I+
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMI-DGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG------------------- 159
           GL    R E+A +  +++ + G  P VVTYN L++GLCK G                   
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCD 379

Query: 160 -----------------MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
                             + +A KL  +M+ +   PD+ +F TVIQ    ++  D A   
Sbjct: 380 PNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHEL 439

Query: 203 LK 204
            +
Sbjct: 440 FE 441



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 14/212 (6%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLIN 48
           +DL E+      H     Y   I+G+CK   I++A+        +  +  D+F YS+LIN
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319

Query: 49  GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-E 107
           GL   NR ++A EL+++M+  G + ++VTYN L+    +      AM + + +      +
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCD 379

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            N+  Y+++ID  C+V R  +A K   ++  + L+P  VT+  +I  LCK+  I EA +L
Sbjct: 380 PNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHEL 439

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +  K C PDS  FNT++ G+      D A
Sbjct: 440 FESIG-KTCKPDSVLFNTMLAGYCKITRIDDA 470



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y++L+NG      +K+A+ LF +M   GI A L ++N ++       G+ S    +
Sbjct: 136 DEVSYNTLMNGFFKAGDVKKALALFGEMKDSGI-AVLRSHN-IVLRGLCSGGKISMAWEV 193

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                  +  N+  Y+++IDGLC+  + ++A     Q+ +K + P VVTY  LI+GL K+
Sbjct: 194 FKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQ 253

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             + EA  L  + + KGC P   ++NT+I G 
Sbjct: 254 RRVKEAYDLFEEARAKGCHPTVVTYNTMIDGL 285



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           ++ ++ GLC+  ++  A E+F  M   GI +  L++Y  +I    + +    A+ L + +
Sbjct: 174 HNIVLRGLCSGGKISMAWEVFKDM--SGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQM 231

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
                  ++  Y  +IDGL +  R +EA    ++   KG  P VVTYN +I+GLCK G I
Sbjct: 232 VDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRI 291

Query: 162 MEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             A  L   M +E    PD  +++ +I G  + N  ++A
Sbjct: 292 ENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKA 330



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 10/198 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y   ++G+CK    D A++         +C  +V  Y+ LI+  C  +RL +AV+L  +
Sbjct: 348 TYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKE 407

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  + +  + VT+  +I    ++     A  L +++ +     ++ +++ ++ G C++ R
Sbjct: 408 MEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSV-LFNTMLAGYCKITR 466

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A+K  D++ + G  P + TY  L+ G C+ G   +A  +  +M E G FP       
Sbjct: 467 IDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMG-FPPERHLAE 525

Query: 186 VIQGFLVKNETDRASSFL 203
           ++      +   R   F+
Sbjct: 526 LVDRTRTDHPPPRRPYFV 543


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 106/204 (51%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E   K N   +   +NG+CK   ++ A       +K+G+  D   Y++L+ G C    
Sbjct: 218 MREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGC 277

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA+ +F +M  +GI  ++VT+  LIH   +      A+ L++ +     ++N   ++ 
Sbjct: 278 SHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C+ G  ++A   + ++ +  + P VV YN LING C  G + EA +L+ +M+ KG
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  +++T++  +    +T  A
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSA 421



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  DS +  G+  +V+ Y+ L+  LC     KEA+ +   M   G     VTYN L+   
Sbjct: 143 RFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAF 202

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A  L+  +     + N+  ++ V++G+C+ GR E+ARK  D++ ++GL P  
Sbjct: 203 CRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG 262

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           V+YN L+ G CK G   EA  +  +M  KG  PD  +F ++I         +RA   +++
Sbjct: 263 VSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVRE 322



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G CK+     A+       +KGI  DV  ++SLI+ +C    L+ AV L  +M 
Sbjct: 265 YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR 324

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+    +T+  LI D + K+G    A+  ++ + + + + ++  Y+ +I+G C VGR 
Sbjct: 325 ERGLQMNEITFTALI-DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRM 383

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EAR+ + ++  KG+ P VVTY+ +++  CK G    A +L  QM E G  PD+ +++++
Sbjct: 384 DEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSL 443

Query: 187 IQ 188
           I+
Sbjct: 444 IR 445



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    V  Y++++  L   + L  A   FD M++ G+   + TYN L+     +  R  A
Sbjct: 118 GYAPSVLAYNAVLLALSDAS-LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +++L+ +     + N   Y+ ++   CR G  + A + +D + E GL P +VT+N ++NG
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +CK G + +A K+  +M ++G  PD  S+NT++ G+
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +   C+  E+D A +        G+  ++  ++S++NG+C   R+++A ++F
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV +G+  + V+YN L+    +      A+++   + R     ++  ++ +I  +C+ 
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A   + ++ E+GL    +T+  LI+G CKKG + +A   + +M++    P    +
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCY 370

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G+ +    D A   +++
Sbjct: 371 NALINGYCMVGRMDEARELVRE 392



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + N   +   I+G CK   +D A+       +  I   V  Y++LING C   
Sbjct: 322 EMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVG 381

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA EL  +M A+G+  ++VTY+ ++    +     SA  L Q +  +    +   YS
Sbjct: 382 RMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYS 441

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I  LC   R  +A      +   GL P  VTY  LI+G CK+G +  A  L  +M + 
Sbjct: 442 SLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA 501

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  +++ +I G      T  A   L K
Sbjct: 502 GVLPDVVTYSVLINGLSKSARTKEAQRLLFK 532



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 22/219 (10%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   ++  CK  +  SA       ++ G+  D   YSSLI  LC   RL +A  
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           LF  M++ G+  + VTY  LI  + ++     A++L   + +     ++  YS++I+GL 
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLS 518

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYN---------------ILINGLCKKGMIMEADK 166
           +  R +EA++ L +L  +  VP  + Y+                L+ G C KG++ EADK
Sbjct: 519 KSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADK 578

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   + ++    D + ++ +I G   +    +A SF K+
Sbjct: 579 VYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQ 617



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 28/198 (14%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G CK   ++ A       +K G+  DV  YS LINGL    R KEA  L  K+ 
Sbjct: 475 YTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLY 534

Query: 68  AQGITAELVTYNPLIH--DNWEKQGRFSAMALLQTL-------ERDK---------YELN 109
            +      + Y+ L+    N E +   S +ALL+         E DK         + L+
Sbjct: 535 HEEPVPANIKYDALMRCCRNAELK---SVLALLKGFCMKGLMNEADKVYQSILDRNWNLD 591

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             VYS++I G CR G   +A     Q+ + G  P   +   LI GL +KGM++EAD+++ 
Sbjct: 592 GSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQ 651

Query: 170 QMKEKGCFPDSTSFNTVI 187
           Q+       D+ +   +I
Sbjct: 652 QLLNCCSLADAEASKALI 669



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+  D +   G+ P V TYNIL+  LC +G   EA 
Sbjct: 119 YAPSVLAYNAVLLALSDAS-LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +L  M+  GC P++ ++NT++  F    E DRA
Sbjct: 178 SVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRA 211


>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
          Length = 437

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + H +   +  +C+    D A       + +G    V  +S+++  LC   R+ +A+E+ 
Sbjct: 55  DAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVL 114

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D M   G    + TYN L+       GR   A+ LL+ L+      +I  +++V+DG C+
Sbjct: 115 DAMCGLGCEPTIRTYNSLV-GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 173

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---KEKGCFPD 179
           VGR EEA          GL P   TYN L+NG CK+G  ++A  LL++M    +  C PD
Sbjct: 174 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 233

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
            TSF  V+   L   ET  A    K+
Sbjct: 234 KTSFGIVLTALLRAGETSAAWQTYKR 259



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM-VAQGITAELVTYNPLI 82
           +++ +D   +    L V  Y+ +++ L        AV LF  M VA    +       L 
Sbjct: 8   RVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMPVAPDAHSFATAVQCLC 67

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
                 + +   +AL + + R  +  ++  +S V+  LC+ GR  +A + LD +   G  
Sbjct: 68  RQGAPDEAK---LALDEMVARG-FRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLGCE 123

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P + TYN L+ GLC  G + EA +LL ++K+    PD  +F  V+ GF     T+ A++ 
Sbjct: 124 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 183



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E V++ D +        +  YN ++          +A+AL + +       +   ++ 
Sbjct: 5   VEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 61

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +  LCR G  +EA+  LD++  +G  P V T++ ++  LCK+G + +A ++L  M   G
Sbjct: 62  AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLG 121

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P   ++N+++ G       + A   LKK
Sbjct: 122 CEPTIRTYNSLVGGLCYVGRLEEALELLKK 151



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 50/230 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
               Y   + G+C +  ++ A++         +  D++ ++ +++G C   R +EA  +F
Sbjct: 125 TIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIF 184

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL------------------------- 98
              +  G++    TYN L++ + ++     A ALL                         
Sbjct: 185 HDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 244

Query: 99  -------------QTLERDKYELNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKG 140
                        + +ER  +E++      +  GLCR          +A +   ++   G
Sbjct: 245 LRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFAKVVASG 304

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             P   TY ++   L + G +  A  LL  M  KG      ++  V++  
Sbjct: 305 HEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRAL 354



 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLC-----TFNRLKEAVEL 62
           +GI +  + +  E  +A        + G  +D     +L  GLC       + L +A E+
Sbjct: 237 FGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEV 296

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC 121
           F K+VA G      TY  L+     + G   +A+ALL+ + R  Y L    Y+ V+  LC
Sbjct: 297 FAKVVASGHEPVSYTYC-LMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALC 355

Query: 122 RVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKG 159
             GR  +A + L   +  +  VPG   +  L+  L ++G
Sbjct: 356 DRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQG 394


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   I+G C+   +D A+       KKG+  DVF Y+S+ +GLC  NR  EA  L   M
Sbjct: 406 IFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM 465

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G++   +++  LI D + K+G F  A  + + +E      NI  Y+++IDG  + G 
Sbjct: 466 VERGVSPNTMSFTTLI-DIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 524

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA K  D+L  +GL+P V T   LI+G C  G +  A KL  +M ++G  P+  ++  
Sbjct: 525 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 584

Query: 186 VIQGFLVKNETDRA 199
           +I G      ++ A
Sbjct: 585 MISGLSKDGRSEEA 598



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T++    + H YG  I+G+CK  ++++A         KGI L+  ++++LI+G C   
Sbjct: 359 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 418

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ L   M  +G+ +++  YN +     +   +  A  LL ++       N   ++
Sbjct: 419 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 478

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID  C+ G + EA++   ++ EKG VP ++TYN+LI+G  K+G + EA KL  +++ +
Sbjct: 479 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 538

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  +  ++I G  +  + D A
Sbjct: 539 GLIPDVYTCTSLIHGECIDGKVDMA 563



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+G   I +I+ A +       KGI  DV+VY+S+I+  C    +K A+ LF
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 357

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G+     TY  LIH   +     +A  L+  ++    +LN  +++ +IDG C  
Sbjct: 358 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCES 417

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA +    + +KGL   V  YN + +GLCK     EA  LL  M E+G  P++ SF
Sbjct: 418 GMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSF 477

Query: 184 NTVI 187
            T+I
Sbjct: 478 TTLI 481



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + + +VY   I+  C+   +       D    KG+      Y +LI+G+C   
Sbjct: 324 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 383

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  L ++M  +GI    V +N LI    E      A+ L   +E+   E ++  Y+
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +  GLC++ R +EA+  L  + E+G+ P  +++  LI+  CK+G  +EA ++  +M+EK
Sbjct: 444 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 503

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++N +I G+
Sbjct: 504 GNVPNIITYNVLIDGY 519



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+G+  +V  Y+ LI+G     +++EA  LF++M  +GI A++  Y  +I  N       
Sbjct: 292 KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 351

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   +       +   Y  +I G+C+ G+ E A+  ++++  KG+    V +N LI
Sbjct: 352 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +G C+ GM+ EA +L V M++KG   D  ++N++  G    N  D A   L
Sbjct: 412 DGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 462



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 17  IRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK  ++       D    KG+  +V  Y++ I G      L    E+   M  +
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293

Query: 70  GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G+   +VTY  LIH  +   G+   A  L + +     E ++ VY+ +I   CR G  + 
Sbjct: 294 GVACNVVTYTLLIH-GFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKR 352

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A    D++++KGL+P   TY  LI+G+CK G +  A  L+ +M+ KG   +   FNT+I 
Sbjct: 353 ALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLID 412

Query: 189 GFLVKNETDRA 199
           G+      D A
Sbjct: 413 GYCESGMVDEA 423



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 38  LDVFVYSSLI--NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           ++V VYS  I  +GLC    ++   +L D++ A+G+ A +VTYN  I   +++       
Sbjct: 225 VEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVA 284

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +L  +E++    N+  Y+L+I G   +G+ EEA++  +++ EKG+   V  Y  +I+  
Sbjct: 285 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 344

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           C+ G +  A  L  +M +KG  P + ++  +I G
Sbjct: 345 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 378



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGL 50
           F + E+    N   +   I+  CK           RE++   +KG   ++  Y+ LI+G 
Sbjct: 463 FSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME---EKGNVPNIITYNVLIDGY 519

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
                +KEA +L D++  +G+  ++ T   LIH          A+ L   + +     N+
Sbjct: 520 SKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNV 579

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
             Y+ +I GL + GR EEA K  D++ E GL P    Y+ L+  L
Sbjct: 580 VTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 9/194 (4%)

Query: 19  INGMCKIREIDSAIK-KGI------CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   ++   + KG+      C DVF +S+LINGLC   RL E   LFD+M  +G+
Sbjct: 184 ISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGL 243

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI D   K G+   A+   Q +       ++  Y+ +I+GLC+VG  +EAR
Sbjct: 244 VPNGVTFTVLI-DGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 302

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + ++++S  GL P  +T+  LI+G CK G +  A ++  +M E+G   D  +F  +I G 
Sbjct: 303 RLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGL 362

Query: 191 LVKNETDRASSFLK 204
                   A   L+
Sbjct: 363 CRDGRVHDAERMLR 376



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 9/198 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + I+G CK  ++D A+K       +G+  D+  Y++LINGLC    LKEA  L ++M
Sbjct: 249 TFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM 308

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G+  + +T+  LI D   K G   SA+ + + +  +  EL+   ++++I GLCR GR
Sbjct: 309 SASGLRPDRITFTTLI-DGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGR 367

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A + L  +   G  P   TY ++++  CKKG +    KLL +M+  G  P   ++N 
Sbjct: 368 VHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNA 427

Query: 186 VIQGFLVKNETDRASSFL 203
           ++ G   + +   A   L
Sbjct: 428 LMNGLCKQGQVKNAKMLL 445



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ +  +  NF  + + ++G CK+  + SA        K+G+   V  +++LI+G C  
Sbjct: 131 LEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKA 190

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEV 112
             ++E   L   M ++ +  ++ T++ LI +   K+GR    +LL   +       N   
Sbjct: 191 GAVEEGFRLKGVMESERVCPDVFTFSALI-NGLCKEGRLDEGSLLFDEMCGKGLVPNGVT 249

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++IDG C+ G+ + A K    +  +G+ P +VTYN LINGLCK G + EA +L+ +M 
Sbjct: 250 FTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMS 309

Query: 173 EKGCFPDSTSFNTVIQG 189
             G  PD  +F T+I G
Sbjct: 310 ASGLRPDRITFTTLIDG 326



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 18/190 (9%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  +++SA       +++GI LD   ++ LI+GLC   R+ +A  +   M++ G 
Sbjct: 324 IDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGF 383

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +  TY  ++ D + K+G       LL+ ++ D +   +  Y+ +++GLC+ G+ + A+
Sbjct: 384 KPDDPTYT-MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAK 442

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             LD +   G+ P  +TYNIL+ G  K G  ++ D   +   EKG   D  S+  ++   
Sbjct: 443 MLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVD---IFNSEKGLVKDYASYTALV--- 496

Query: 191 LVKNETDRAS 200
              NE+ + S
Sbjct: 497 ---NESSKTS 503



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  N   +++++ G C+VG    AR   D++ ++GL P VV++N LI+G CK G + E  
Sbjct: 138 YPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGF 197

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +L   M+ +   PD  +F+ +I G   +   D  S
Sbjct: 198 RLKGVMESERVCPDVFTFSALINGLCKEGRLDEGS 232



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ +   + +++  G       +N L+H   +  G  SA  +   + +      +  ++ 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G C+ G  EE  +    +  + + P V T++ LINGLCK+G + E   L  +M  KG
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 176 CFPDSTSFNTVIQG 189
             P+  +F  +I G
Sbjct: 243 LVPNGVTFTVLIDG 256


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+ +CK R +  A++       +GI  +V  YSSLI GLC   RL +A     +M ++
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            I   ++T++ LI D + K+G+ S + ++ + + +   + N+  YS +I GLC   R +E
Sbjct: 258 KINPNVITFSALI-DAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 316

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K LD +  KG  P VVTY+ L NG  K   + +  KLL  M ++G   ++ S NT+I+
Sbjct: 317 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIK 376

Query: 189 GFLVKNETDRA 199
           G+    + D A
Sbjct: 377 GYFQAGKIDLA 387



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I +N  C+  +  SA+       K GI  D+   SSL+NG C  N +K+AV + 
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVA 181

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++V    LI    + +    A+ +L+ ++      N+  YS +I GLC+ 
Sbjct: 182 GQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKS 241

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A ++L ++  K + P V+T++ LI+   K+G + + D +   M +    P+  ++
Sbjct: 242 GRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTY 301

Query: 184 NTVIQGFLVKNETDRASSFL 203
           +++I G  + N  D A   L
Sbjct: 302 SSLIYGLCMHNRVDEAIKML 321



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +     N   Y   I G+C    +D AIK       KG   +V  YS+L NG    +R
Sbjct: 289 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 348

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + ++L D M  +G+ A  V+ N LI   ++      A+ +   +  +    NI  Y++
Sbjct: 349 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 408

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GL   G  E+A  + + + +      ++TY I+I+G+CK  M+ EA  L  ++K K 
Sbjct: 409 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 468

Query: 176 CFPDSTSFNTVIQGFL---VKNETDRASSFLKKNM 207
             PD  ++  +I       ++ E D  + F +K++
Sbjct: 469 VEPDFKAYTIMIAELNRAGMRTEADALNRFYQKHV 503



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 92/179 (51%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           + I++A    I  D++  + L+N  C   +   A+    KM+  GI  ++VT + L++  
Sbjct: 109 KRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGF 168

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ +   +E+   + ++ V +++ID LC+      A + L ++ ++G+ P V
Sbjct: 169 CLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNV 228

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           VTY+ LI GLCK G + +A++ L +M  K   P+  +F+ +I  +  + +  +  S  K
Sbjct: 229 VTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYK 287


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   I+G C+   +D A+       KKG+  DVF Y+S+ +GLC  NR  EA  L   M
Sbjct: 402 IFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM 461

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G++   +++  LI D + K+G F  A  + + +E      NI  Y+++IDG  + G 
Sbjct: 462 VERGVSPNTMSFTTLI-DIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 520

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +EA K  D+L  +GL+P V T   LI+G C  G +  A KL  +M ++G  P+  ++  
Sbjct: 521 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 580

Query: 186 VIQGFLVKNETDRA 199
           +I G      ++ A
Sbjct: 581 MISGLSKDGRSEEA 594



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T++    + H YG  I+G+CK  ++++A         KGI L+  ++++LI+G C   
Sbjct: 355 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 414

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA+ L   M  +G+ +++  YN +     +   +  A  LL ++       N   ++
Sbjct: 415 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 474

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID  C+ G + EA++   ++ EKG VP ++TYN+LI+G  K+G + EA KL  +++ +
Sbjct: 475 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 534

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  +  ++I G  +  + D A
Sbjct: 535 GLIPDVYTCTSLIHGECIDGKVDMA 559



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+G   I +I+ A +       KGI  DV+VY+S+I+  C    +K A+ LF
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 353

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  +G+     TY  LIH   +     +A  L+  ++    +LN  +++ +IDG C  
Sbjct: 354 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCES 413

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA +    + +KGL   V  YN + +GLCK     EA  LL  M E+G  P++ SF
Sbjct: 414 GMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSF 473

Query: 184 NTVI 187
            T+I
Sbjct: 474 TTLI 477



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + + +VY   I+  C+   +  A+        KG+      Y +LI+G+C   
Sbjct: 320 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 379

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A  L ++M  +GI    V +N LI    E      A+ L   +E+   E ++  Y+
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +  GLC++ R +EA+  L  + E+G+ P  +++  LI+  CK+G  +EA ++  +M+EK
Sbjct: 440 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 499

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P+  ++N +I G+
Sbjct: 500 GNVPNIITYNVLIDGY 515



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K+G+  +V  Y+ LI+G     +++EA  LF++M  +GI A++  Y  +I  N       
Sbjct: 288 KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 347

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   +       +   Y  +I G+C+ G+ E A+  ++++  KG+    V +N LI
Sbjct: 348 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +G C+ GM+ EA +L V M++KG   D  ++N++  G    N  D A   L
Sbjct: 408 DGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 458



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 17  IRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++G+CK  ++       D    KG+  +V  Y++ I G      L    E+   M  +
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289

Query: 70  GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G+   +VTY  LIH  +   G+   A  L + +     E ++ VY+ +I   CR G  + 
Sbjct: 290 GVACNVVTYTLLIH-GFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKR 348

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A    D++++KGL+P   TY  LI+G+CK G +  A  L+ +M+ KG   +   FNT+I 
Sbjct: 349 ALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLID 408

Query: 189 GFLVKNETDRA 199
           G+      D A
Sbjct: 409 GYCESGMVDEA 419



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 38  LDVFVYSSLI--NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           ++V VYS  I  +GLC    ++   +L D++ A+G+ A +VTYN  I   +++       
Sbjct: 221 VEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVA 280

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +L  +E++    N+  Y+L+I G   +G+ EEA++  +++ EKG+   V  Y  +I+  
Sbjct: 281 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 340

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           C+ G +  A  L  +M +KG  P + ++  +I G
Sbjct: 341 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 374



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGL 50
           F + E+    N   +   I+  CK           RE++   +KG   ++  Y+ LI+G 
Sbjct: 459 FSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME---EKGNVPNIITYNVLIDGY 515

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
                +KEA +L D++  +G+  ++ T   LIH          A+ L   + +     N+
Sbjct: 516 SKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNV 575

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
             Y+ +I GL + GR EEA K  D++ E GL P    Y+ L+  L
Sbjct: 576 VTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 102/188 (54%), Gaps = 7/188 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ++G+ KI  +D A          GI L+  +YSSLI+G     R+ EA  + ++M
Sbjct: 517 TYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+T  + T+N L+    + +    A+   Q+++  K   N   Y ++I+GLC+V ++
Sbjct: 577 MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKF 636

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A     ++ ++GL P  +TY  +I+GL K G + +A  L  + +  G  PDS S+N +
Sbjct: 637 NKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAM 696

Query: 187 IQGFLVKN 194
           I+G  + N
Sbjct: 697 IEGLSIAN 704



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G  LD   Y+++I+G C   ++ +A +L ++M   G    +VTY  ++ D   K  R  
Sbjct: 474 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVV-DGLAKIDRLD 532

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L +  + +  ELN  +YS +IDG  +VGR +EA   ++++ +KGL P V T+N L+
Sbjct: 533 EAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLL 592

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL K   I EA      MK+  C P+  ++  +I G     + ++A  F ++
Sbjct: 593 DGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQE 645



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 43/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++    F  +  +Y + I+   K+ ++D A K        G+  D   Y+S++  LC  N
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180

Query: 55  RLKEAVELFDKM-----------------------------------VAQGITAELVTYN 79
           RL EAVE+F++M                                    A+G    +V YN
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYN 240

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            ++    +K     A+ + + ++RD    N+  Y+++I  LC+ G  E A K  D + E 
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDAMP-NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEA 299

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P V T NI+I+ LCK   + EA  +   M  K C PD  +F ++I G   +   D A
Sbjct: 300 GLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDA 359



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N     I I+ +CK +++D A         K    D   + SLI+GL    R+ +A  ++
Sbjct: 304 NVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIY 363

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M+       +V Y  LI + ++   +     + + + R     ++ + +  +D + + 
Sbjct: 364 ERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKA 423

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   +++  +G +P   +Y+ILI+ L K G   E  +L   MK++GC  D+ ++
Sbjct: 424 GETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAY 483

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NTVI GF    + ++A   L++
Sbjct: 484 NTVIDGFCKSGKVNKAYQLLEE 505



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L         + LF++M   G    +     LI   + ++GR  +A++LL  
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIR-VFSREGRVDAALSLLDE 121

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ + ++ +I +Y++ ID   +VG+ + A K   ++   GLVP  VTY  ++  LCK   
Sbjct: 122 MKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANR 181

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
           + EA ++  QM++    P + ++NT+I G+    + D A S L++ 
Sbjct: 182 LDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQ 227



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 1   FDLTEQ----RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLING 49
           FDL +     +F+  F  Y   I  + ++ E D  +       + G  ++V + ++LI  
Sbjct: 46  FDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRV 105

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYEL 108
                R+  A+ L D+M +    A++V YN  I D + K G+   A      ++ +    
Sbjct: 106 FSREGRVDAALSLLDEMKSNTFDADIVLYNVCI-DCFGKVGKVDMAWKFFHEMKANGLVP 164

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   Y+ ++  LC+  R +EA +  +Q+ +   VP    YN +I G    G   EA  LL
Sbjct: 165 DDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + + KGC P   ++N ++     K +TD+A
Sbjct: 225 ERQRAKGCIPSVVAYNCILTCLGKKGKTDKA 255



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   D+ + ++ ++ +      ++   LF+++ A+G   +  +Y+ LIH   +    
Sbjct: 402 MRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFA 461

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                L   ++     L+   Y+ VIDG C+ G+  +A + L+++   G  P VVTY  +
Sbjct: 462 RETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSV 521

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++GL K   + EA  L  + K  G   +   ++++I GF      D A   +++ M
Sbjct: 522 VDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMM 577


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 7/203 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +VY   I+G CK   +  A+          +  DVF Y+ LINGLC  +++ EA  LF
Sbjct: 338 NLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLF 397

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM  + I     TYN LIH   ++     A+ L   +     E NI  +S +IDG C V
Sbjct: 398 QKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNV 457

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
              + A     +++ KG+VP VVTY  LI+   K+  + EA +L   M E G  P+  +F
Sbjct: 458 RDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 517

Query: 184 NTVIQGFLVKNETDRASSFLKKN 206
             ++ GF  +     A  F ++N
Sbjct: 518 ACLVDGFWKEGRLSVAIDFYQEN 540



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T    K N ++Y I I  +C+  +++ A        K G+  +++ YS++I+G C   
Sbjct: 224 EMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A  L+ +++   +   +V +  L+    + +   +A +L   + +   + N+ VY+
Sbjct: 284 NVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+ G   EA   L ++    L P V TY ILINGLC +  + EA++L  +MK +
Sbjct: 344 CLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNE 403

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
             FP S ++N++I G+  +   ++A
Sbjct: 404 RIFPSSATYNSLIHGYCKEYNMEQA 428



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   I+G CK   +  A  + K I +     +V V+ +L++G C    L  A  LF
Sbjct: 268 NLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLF 327

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G+   L  YN LIH + +      A+ LL  +E      ++  Y+++I+GLC  
Sbjct: 328 VHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIE 387

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            +  EA +   ++  + + P   TYN LI+G CK+  + +A  L  +M   G  P+  +F
Sbjct: 388 DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITF 447

Query: 184 NTVIQGF 190
           +T+I G+
Sbjct: 448 STLIDGY 454



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D     GI  +V++Y+  I  LC  N+++EA ++F+ M   G+   L TY+ +I D + 
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMI-DGYC 280

Query: 88  KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K G    A  L + +   +   N+ V+  ++DG C+      AR     + + G+ P + 
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            YN LI+G CK G ++EA  LL +M+     PD  ++  +I G  ++++   A+   +K
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQK 399



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR--LKEAVELFDKMVAQ 69
           +NG+ + R  DS        I +G+  DV +Y  L    C F +    +  +L D+M + 
Sbjct: 171 LNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQ--CCFKQGLYSKKEKLLDEMTSL 228

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI   +  Y   I D         A  + + +++     N+  YS +IDG C+ G   +A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++    L+P VV +  L++G CK   ++ A  L V M + G  P+   +N +I G
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 10/213 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T    + N   +   I+G C +R+I +A+        KGI  DV  Y++LI+      
Sbjct: 434 EMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEA 493

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +KEA+ L+  M+  GI     T+  L+   W K+GR S A+   Q   + +   N   +
Sbjct: 494 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFW-KEGRLSVAIDFYQENNQQRSCWNHVGF 552

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+GLC+ G    A +    +   G+ P + +Y  ++ G  ++  I +   L   M +
Sbjct: 553 TCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIK 612

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
            G  P+    N ++  F   N   +++ FL  +
Sbjct: 613 TGILPN-LLVNQLLARFYQANGYVKSACFLTNS 644



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 8/179 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           RE+  +     CL      S++NGL    R       +  M+++G+  ++  Y  L    
Sbjct: 156 REMKCSPDSKACL------SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCC 209

Query: 86  WEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           + KQG +S    LL  +     + N+ +Y++ I  LCR  + EEA K  + + + G++P 
Sbjct: 210 F-KQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPN 268

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + TY+ +I+G CK G + +A  L  ++      P+   F T++ GF    E   A S  
Sbjct: 269 LYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLF 327



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++ +Y ++     + G + +  K LD+++  G+ P V  Y I I  LC+   + EA+K+ 
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             MK+ G  P+  +++ +I G+       +A    K+
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKE 294


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +T+  F  +   YGI ++G CK       +R ++ A +KG  LD F YS++INGLC   +
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EAV + + M+  G T     YN LI+          A+ + + +        +  Y+ 
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+  R+ EA   + ++ EKG  P V+TY++L+ GLC+   +  A +L  Q+   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD    N +I G     +T  A
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLA 288



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N HVY   ING   + + D AI+             V  Y++LINGLC   R  EA +L 
Sbjct: 163 NAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLV 222

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +G    ++TY+ L+    +      A+ L   +  +  + ++++ +++I GLC V
Sbjct: 223 KEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSV 282

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A      ++     P +VT+N L+ G  K G I  A  +  ++   G  PD  S+
Sbjct: 283 GKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSY 342

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N  ++G    +    A  FL+
Sbjct: 343 NITLKGLCSCSRISFAILFLQ 363



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+  +ID A        +  +  D  VY++++NG     R+K+ +EL++ M  +  +  +
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELM-GREXSQNV 59

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           V++N ++   +       A+++ + + +  +  +   Y +++DG C+ G   ++ + L+ 
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEI 119

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
             EKG V     Y+ +INGLCK+  + EA  +L  M + G  P++  +NT+I GF+  ++
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSK 179

Query: 196 TDRA 199
            D A
Sbjct: 180 FDDA 183



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    +  A  ++ +M    ++ + V YN ++ + + + GR      L  L   +   N+
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAML-NGFFRAGRIKDCIELWELMGREXSQNV 59

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +++++ GL   G  ++A    + +++ G V    TY IL++G CK G I ++ ++L  
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEI 119

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +EKG   D+ +++ +I G   + + D A S L
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVL 152



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ +K     Y + + G+C+  +++ A       I  G+  DV + + LI+GLC+  
Sbjct: 224 EMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A+ L+  M        LVT+N L+   ++     +A+ +   + R+  + +I  Y+
Sbjct: 284 KTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R   A   L     K + P ++T
Sbjct: 344 ITLKGLCSCSRISFAILFLQDALAKKIAPSIIT 376


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+ +CK R +  A++       +GI  +V  YSSLI GLC   RL +A     +M ++
Sbjct: 53  ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 112

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            I   ++T++ LI D + K+G+ S + ++ + + +   + N+  YS +I GLC   R +E
Sbjct: 113 KINPNVITFSALI-DAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 171

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K LD +  KG  P VVTY+ L NG  K   + +  KLL  M ++G   ++ S NT+I+
Sbjct: 172 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIK 231

Query: 189 GFLVKNETDRA 199
           G+    + D A
Sbjct: 232 GYFQAGKIDLA 242



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K GI  D+   SSL+NG C  N +K+AV +  +M   GI  ++V    LI    + +  
Sbjct: 5   MKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLV 64

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ +L+ ++      N+  YS +I GLC+ GR  +A ++L ++  K + P V+T++ L
Sbjct: 65  VPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSAL 124

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+   K+G + + D +   M +    P+  +++++I G  + N  D A   L
Sbjct: 125 IDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKML 176



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +     N   Y   I G+C    +D AIK       KG   +V  YS+L NG    +R
Sbjct: 144 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 203

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + ++L D M  +G+ A  V+ N LI   ++      A+ +   +  +    NI  Y++
Sbjct: 204 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 263

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GL   G  E+A  + + + +      ++TY I+I+G+CK  M+ EA  L  ++K K 
Sbjct: 264 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 323

Query: 176 CFPDSTSFNTVIQGFL---VKNETDRASSFLKKNM 207
             PD  ++  +I       ++ E D  + F +K++
Sbjct: 324 VEPDFKAYTIMIAELNRAGMRTEADALNRFYQKHV 358


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 110/198 (55%), Gaps = 13/198 (6%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I+ +CK  ++  A       I++G   +   Y++L+ GLC  +R+ EA +LF KM 
Sbjct: 712 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 771

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------KYELNIEVYSLVIDGLC 121
             G   ++VTY  L+    +     +A+ L + +  D       ++ ++  YS++IDGLC
Sbjct: 772 KLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLC 831

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR +EAR+   ++   G++P V++Y  LI+G C+ G + +A  L  +M ++G   ++ 
Sbjct: 832 KHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV 891

Query: 182 SFNTVIQGFLVKNETDRA 199
           +++ +I GF  + + D+A
Sbjct: 892 TYSVMIHGFCKEGQIDKA 909



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 23/194 (11%)

Query: 15  YGIRINGMCKIREIDSAI-----------KKGI-CLDVFV-YSSLINGLCTFNRLKEAVE 61
           YG  + G+C+   I+ A+           + GI C    + YS +I+GLC   R  EA E
Sbjct: 127 YGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARE 186

Query: 62  LFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           LF +M AQG+  ++++Y  LIH       WEK     A  L   +     + ++    ++
Sbjct: 187 LFKEMKAQGMMPDVISYTSLIHGFCHSGKWEK-----AKCLFNEMLDVGIQPDVTTSGVL 241

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ID  C+ G+  EA + L+ +  +G +  +VTY+ LI GLC K  I EA +L + MK+ GC
Sbjct: 242 IDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGC 301

Query: 177 FPDSTSFNTVIQGF 190
            PD+ ++ T+++G 
Sbjct: 302 RPDAIAYGTLMKGL 315



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 42/219 (19%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I++G  LD+  YS+LI GLC  +R+ EA  LF  M   G   + +TY  L+    +
Sbjct: 370 LEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQ 429

Query: 88  KQGRFSAMALLQTLERDKYELNIEV------YSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
                 A+ L Q +  D     I+       YS++IDGLC+  R +EAR+  +++  +G+
Sbjct: 430 TGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGI 489

Query: 142 VPGVVTYNILING-----------------------------------LCKKGMIMEADK 166
           +P V++Y  LI+G                                   LCKKG ++EA+K
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 549

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS-FLK 204
           LL  + ++GC  D  +  T+++G  +K+   +A+  FLK
Sbjct: 550 LLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLK 588



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 41/216 (18%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I++G  LD+  YS+LI GLC  +R+ EA  LF  M   G   + +TY  L+    +
Sbjct: 77  LEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQ 136

Query: 88  KQGRFSAMALLQTLERDKYELNIEV------YSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
                 A+ L Q +  D     I+       YS++IDGLC+  R +EAR+   ++  +G+
Sbjct: 137 TGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGM 196

Query: 142 VPGVVTYNILING-----------------------------------LCKKGMIMEADK 166
           +P V++Y  LI+G                                    CK+G ++EA++
Sbjct: 197 MPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANE 256

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           LL  M  +GC  D  +++T+I+G  +K+    A+  
Sbjct: 257 LLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQL 292



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 35/163 (21%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           YS +I+GLC   R  EA ELF +M A G+  ++++Y  LIH                   
Sbjct: 642 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH------------------- 682

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                           G CR G+W++A+   +++ + G+ P V T+++LI+ LCK+G ++
Sbjct: 683 ----------------GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 726

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           EA++LL  M ++GC P++ ++ T+++G  + +    A+    K
Sbjct: 727 EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 769



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           G+ I+  CK  ++  A       + +G  LD+  YS+LI GLC  +R+ EA +LF  M  
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE-------VYSLVIDGLC 121
            G   + + Y  L+    +      A+ L Q +  D  +  I+         S++ID LC
Sbjct: 299 LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILC 358

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+  EA + L+ + ++G +  +VTY+ LI GLC +  I EA  L + M++ GC PD+ 
Sbjct: 359 KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAI 418

Query: 182 SFNTVIQGF 190
           ++ T+++G 
Sbjct: 419 TYGTLMKGL 427



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 15/211 (7%)

Query: 9   KGNFHVYGIRINGMCKI------REIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I I+G+CK       RE+   +K  G+  DV  Y+SLI+G C   + K+A  
Sbjct: 636 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 695

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGL 120
           LF++MV  G+  ++ T++ LI D   K+G+   A  LL+ + +     N   Y+ ++ GL
Sbjct: 696 LFNEMVDIGVQPDVTTFSVLI-DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 754

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCF-- 177
           C   R  EA +   ++ + G +P VVTY  L+ GLC+ G I  A +L  +M  + G +  
Sbjct: 755 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGT 814

Query: 178 ---PDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  S++ +I G       D A    K+
Sbjct: 815 NFKPDVISYSIIIDGLCKHGREDEARELFKE 845



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 51/244 (20%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + K     Y I I+G+CK R  D A +       +G+  DV  Y+SLI+G C   + ++A
Sbjct: 160 KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKA 219

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVID 118
             LF++M+  GI  ++ T   LI D + K+G+   A  LL+ +      L+I  YS +I 
Sbjct: 220 KCLFNEMLDVGIQPDVTTSGVLI-DMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIK 278

Query: 119 GLCRVGRWEEAR------KKL------------------------------------DQL 136
           GLC   R  EA       KKL                                     Q 
Sbjct: 279 GLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY 338

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             K + P V T ++LI+ LCK+G ++EA++LL  M ++GC  D  +++T+I+G  +++  
Sbjct: 339 GIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRI 398

Query: 197 DRAS 200
             A+
Sbjct: 399 SEAT 402



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           + K     Y I I+G+CK R  D A +       +GI  DV  Y++LI+G C   + ++A
Sbjct: 453 KCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 512

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LF++M+  GI  ++ T + LI    +K     A  LL+ + +    L++   + ++ G
Sbjct: 513 KCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKG 572

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----- 174
           LC   R  +A +   ++ + G +P VVT   L+ GLC+ G I  A +L   M        
Sbjct: 573 LCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYG 632

Query: 175 -GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P++ S++ +I G       D A    K+
Sbjct: 633 INCKPNAISYSIIIDGLCKCGREDEARELFKE 664



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 25/221 (11%)

Query: 7   RFKGNFH---VYGIRINGMCKIREIDSAI-------KKGICLDVFVYS---------SLI 47
           R  G F     + I IN +C ++ ++  +       ++G   D+  YS          LI
Sbjct: 2   RLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLI 61

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           + LC   ++ EA EL + M+ +G   ++VTY+ LI     +     A  L  ++++    
Sbjct: 62  DILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCR 121

Query: 108 LNIEVYSLVIDGLCRVGRWEEA----RKKLDQLSEKGL--VPGVVTYNILINGLCKKGMI 161
            +   Y  ++ GLC+ G    A    ++ L+     G+   P +++Y+I+I+GLCK    
Sbjct: 122 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 181

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            EA +L  +MK +G  PD  S+ ++I GF    + ++A   
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN--------PLIHDNW 86
           G+  D F ++ LIN LC   R+ E +     ++ +G   ++VTY+         ++ D  
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 87  EKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            K+G+   A  LL+ + +    L+I  YS +I GLC   R  EA      + + G  P  
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 146 VTYNILINGLCKKGMIMEADKLLVQM-KEKG-----CFPDSTSFNTVIQGFLVKNETDRA 199
           +TY  L+ GLC+ G I  A +L  +M  + G     C P   S++ +I G       D A
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 200 SSFLKK 205
               K+
Sbjct: 185 RELFKE 190



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 9/104 (8%)

Query: 8   FKGNFHVYGIRINGMCK------IREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAV 60
           FK +   Y I I+G+CK       RE+   +K  G+  +V  Y+SLI+G C   +L++A 
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104
            LF++MV QG+    VTY+ +IH  + K+G+    AL Q +E +
Sbjct: 876 HLFNEMVDQGVQLNAVTYSVMIH-GFCKEGQIDK-ALFQKMEAN 917


>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 42/198 (21%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I I+ +C  + +  A +       +G   D F+Y++++ G C  +R  EA+E
Sbjct: 231 KPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIE 290

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           ++++M  +G+  +L+TYN LI                                    GL 
Sbjct: 291 VYNRMKEKGVEPDLITYNTLIF-----------------------------------GLS 315

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR  EA+K L  ++EKG  P  VTY  L+NG+C+KG  + A  LL +M+ KGC P++ 
Sbjct: 316 KSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTC 375

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++NT++ G       D+A
Sbjct: 376 TYNTLLHGLCKSRMFDKA 393



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + +  +C    +D A++       K    D++ Y+ L+  LC    L       D+M  +
Sbjct: 168 LAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTK 227

Query: 70  -GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
             +   LVTY  LI +    +    A  L+  LE + ++ +  +Y+ ++ G C + R  E
Sbjct: 228 FDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSE 287

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A +  +++ EKG+ P ++TYN LI GL K G + EA KLL  M EKG FPD  ++ +++ 
Sbjct: 288 AIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMN 347

Query: 189 GFLVKNETDRASSFLKK 205
           G   K ET  A + L++
Sbjct: 348 GMCRKGETLAALALLEE 364



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 7/191 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L E+ FK +  +Y   + G C +     AI+       KG+  D+  Y++LI GL    R
Sbjct: 260 LEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGR 319

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +L   M  +G   + VTY  L++    K    +A+ALL+ +E      N   Y+ 
Sbjct: 320 VSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNT 379

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC+   +++A +    +   GL   + +Y   +  LC  G + +A ++     E  
Sbjct: 380 LLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESK 439

Query: 176 CFPDSTSFNTV 186
              D  +++T+
Sbjct: 440 SLSDVAAYSTL 450


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 8/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C + +++ A++       KG   D   Y +++  LC   R+KE   L 
Sbjct: 240 NVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLM 299

Query: 64  DKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +KMV    +  + VTYN L+H   +      A+  L+  E   ++++   YS +++  C 
Sbjct: 300 EKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCM 359

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR + A++ ++++  KG  P VVTY  ++NGLCK G + EA K+L QM + GC P++ S
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVS 419

Query: 183 FNTVIQGF 190
           +  ++ G 
Sbjct: 420 YTALLNGL 427



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 8/208 (3%)

Query: 4   TEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           TE+R F+ +   Y   +N  C    +D A       I KG   DV  Y++++NGLC   +
Sbjct: 338 TEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGK 397

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA ++  +M   G     V+Y  L++   +      A  ++ T E D +  N   YS+
Sbjct: 398 VEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSV 457

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GL R G+  EA   + ++  KG  P  V  N+LI  LC +  + EA K + +   +G
Sbjct: 458 VMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRG 517

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C  ++ +F TVI GF   +  D A S L
Sbjct: 518 CAVNAVNFTTVIHGFCQSDNIDTALSLL 545



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 96/173 (55%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G  +D   YS+++N  C   R+  A E+ ++M+ +G + ++VTY  +++   +     
Sbjct: 340 ERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVE 399

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  +LQ + +   + N   Y+ +++GLC+ G   EAR+ ++   E    P  +TY++++
Sbjct: 400 EAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVM 459

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL ++G + EA  ++ +M  KG FP     N +I+   ++ + + A  F+++
Sbjct: 460 HGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEE 512



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+  ++ + ++ I+ L   N+L++A+   ++M   GIT  +VTYN LI    +     
Sbjct: 199 KAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVE 258

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNIL 151
            AM L+  +       +   Y  V+  LC+  R +E R  ++++  +  L P  VTYN L
Sbjct: 259 HAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTL 318

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++ L K G   EA + L + +E+G   D   ++ ++  F ++   DRA   +
Sbjct: 319 VHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIV 370



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 85  NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++ + G+  +AM +L  +++   E N+ + +  I  L    + E+A + L+++   G+ P
Sbjct: 180 SYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITP 239

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
            VVTYN LI G C    +  A +L+ +M  KGC PD  S+ TV+ GFL +++
Sbjct: 240 NVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVM-GFLCQDK 290



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           LI  LC   ++ EA +  ++ + +G     V +  +IH   +     +A++LL  +  + 
Sbjct: 493 LIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNN 552

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              +   ++ +ID L + GR EEA     ++ +KGL P  VTY  +I+  CK G + E  
Sbjct: 553 KHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELI 612

Query: 166 KLLVQMKEKG-CFPDSTSFNTVIQ 188
           KLL +M  +  C    T++N VI+
Sbjct: 613 KLLGKMLSRSKC---RTAYNQVIE 633



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 44/220 (20%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG+CK+ +++ A        K G   +   Y++L+NGLC      EA E+ +  
Sbjct: 384 TYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTS 443

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS--------------------------AMALLQT 100
                T   +TY+ ++H    ++G+ S                          ++ L Q 
Sbjct: 444 EEDWWTPNAITYSVVMH-GLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQK 502

Query: 101 LERDKY----------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           +   K            +N   ++ VI G C+    + A   LD +      P  VT+  
Sbjct: 503 MNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTA 562

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +I+ L KKG I EA    ++M +KG  P   ++  VI  +
Sbjct: 563 IIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQY 602



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+   ID+A+             D   ++++I+ L    R++EA     KM+ +G+
Sbjct: 529 IHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGL 588

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
               VTY  +IH  + K GR   +  L  + L R K       Y+ VI+ LC  G  E A
Sbjct: 589 DPTPVTYRAVIH-QYCKMGRVEELIKLLGKMLSRSKCR---TAYNQVIEKLCNFGNPEAA 644

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            K +  +          T ++L+     KG+ + A K+  +M ++   PD
Sbjct: 645 DKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNLIPD 694


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I    +  ++DSA++       KG   D + Y  L+N L    R++EA   FD M
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G+T  + TYN L+ D + K G+   A+ L   ++R  ++ ++  Y++++D LC  GR
Sbjct: 162 LERGLTPNIPTYN-LLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              ARK   +++  G  P   TY+ L+NGL K G + EA K+  +M ++G   D  ++N+
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNS 280

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++         DR    +K+
Sbjct: 281 LLATLAKAGNMDRVWKLMKE 300



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  + F+ +   Y I ++ +C    + +A K        G   D + YS+L+NGL    
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSG 254

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER-----DKYELN 109
           R++EA ++F +MV +G+  +LV YN L+    +         L++ + R     D +  N
Sbjct: 255 RVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFN 314

Query: 110 I---------------EV---------------YSLVIDGLCRVGRWEEARKKLDQLSEK 139
                           EV               Y+++ID   R G   +AR+ L+++ E 
Sbjct: 315 TIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEA 374

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G +P   TYN LI+ L   G + EA  +L +M+  GC PD  ++N ++     + E  RA
Sbjct: 375 GFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRA 434

Query: 200 SSFLKK 205
           +   ++
Sbjct: 435 ARLFQQ 440



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG  LD F Y+ LI       +L  A+E+F +M  +G   +  TY  L+ +   K GR
Sbjct: 92  VQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLV-NALGKAGR 150

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A +    +       NI  Y+L++D   +VG+ + A     ++  +G  P VVTYNI
Sbjct: 151 VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           L++ LC  G +  A KL  +M   GC PDS +++T++ G 
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGL 250



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG   D F ++++++ L   N+   A E+F +MV  G   +L++YN LI D++ + G  
Sbjct: 303 RKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI-DSYARFGDA 361

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + A  +L+ +    +    + Y+ +I  L   G+ +EA   L+++   G  P VVTYN L
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRL 421

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           ++ L K+G    A +L  QMK+KG  PD+ S+   I G    +  D A    K
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFK 474



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ + F  +   +   ++ + K  + D+A       ++ G   D+  Y+ LI+    F 
Sbjct: 300 EMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFG 359

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEV 112
              +A ++ ++MV  G   E  TYN LIH  W    G+   A A+L+ +E      ++  
Sbjct: 360 DAAQARQMLEEMVEAGFIPETKTYNSLIH--WLATDGQVDEAFAVLEEMETAGCRPDVVT 417

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++D L + G  + A +   Q+ +KG+ P  ++Y + I+GL     + EA  L   MK
Sbjct: 418 YNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMK 477

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETD 197
             GC  D   +  +I+      +T+
Sbjct: 478 AVGCPVDKAMYRILIRAAHRAGDTE 502



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 58/154 (37%)

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           L ++  L     L  +MVA+G      T   LI           A  L    E       
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPT 64

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  ++ +ID L   G +E A     +L +KG       YN+LI    + G +  A ++  
Sbjct: 65  VHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +MK KG  PD  ++  ++           A SF 
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF 158


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  + F+     YG  I+G+ KI  +D A         K I L+V +YSSLI+G     
Sbjct: 612 EMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA  + ++++ +G+T  + T+N L+    + +    A+   Q+++  K   N   Y 
Sbjct: 672 RIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I+GLC+V ++ +A     ++ ++G+ P  ++Y  +I+GL K G I EA  L  + K  
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PDS  +N +I+G    N    A S  ++
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 10/200 (5%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I  +CK   +D A++    L+        + Y+++I G  +  +  EA  L ++ 
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A+G    ++ YN ++     K G+   A+ + + +++D    N+  Y+++ID LCR G+
Sbjct: 335 RAKGSIPSVIAYNCIL-TCLRKMGKVDEALRVFEEMKKDAAP-NLSTYNILIDMLCRAGK 392

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A +  D + + GL P V T NI+++ LCK   + EA  +  QM  K C PD  +F +
Sbjct: 393 LDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCS 452

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G       D A    +K
Sbjct: 453 LIDGLGKVGRVDDAYKIYEK 472



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N     I ++ +CK +++D A      +   +C  D   + SLI+GL    R+ +A +++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIY 470

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+        + Y  LI + +    +     + + +       ++++ +  +D + + 
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKA 530

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   +++  +  VP   +Y+ILI+GL K G   E  +L   MKE+GC  D+ ++
Sbjct: 531 GEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N VI GF    + ++A   L++
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEE 612



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D   YS LI+GL       E  ELF  M  QG   +   YN +I D + K G+ + A  L
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCKCGKVNKAYQL 609

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ ++   +E  +  Y  VIDGL ++ R +EA    ++   K +   VV Y+ LI+G  K
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G I EA  +L ++ +KG  P+  ++N+++   +   E + A
Sbjct: 670 VGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEA 711



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G+ K+  +D A K         C  +  VY+SLI       R ++  +++  MV Q  
Sbjct: 454 IDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNC 513

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + +L   N  +   ++        A+ + ++  ++  +   YS++I GL + G   E  +
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + E+G V     YNI+I+G CK G + +A +LL +MK KG  P   ++ +VI G  
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 192 VKNETDRA 199
             +  D A
Sbjct: 634 KIDRLDEA 641



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI      N     + LF +M   G    +  +  LI   + K+GR  SA++LL  
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR-GFAKEGRVDSALSLLDE 228

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++    + +I +Y++ ID   +VG+ + A K   ++   GL P  VTY  +I  LCK   
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + EA ++   +++    P + ++NT+I G+    + D A S L++
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I     +   D  +       + G    V ++++LI G     R+  A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +  + A++V YN  I D++ K G+   A      +E +  + +   Y+ +I 
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCI-DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  + L +   VP    YN +I G    G   EA  LL + + KG  P
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++N ++       + D A
Sbjct: 342 SVIAYNCILTCLRKMGKVDEA 362



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+++ ++    +  +Y+ LIH   +         L  +++     L+   Y++VIDG C
Sbjct: 539 MFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G+  +A + L+++  KG  P VVTY  +I+GL K   + EA  L  + K K    +  
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVV 658

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
            ++++I GF      D A   L++ M
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELM 684



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E +   N   YGI ING+CK+R+ + A        K+G+      Y+++I+GL     
Sbjct: 718 MKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGN 777

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA  LFD+  A G   +   YN +I           A +L +   R    ++ +   +
Sbjct: 778 IAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVV 837

Query: 116 VIDGLCRVGRWEEA 129
           ++D L +    E+A
Sbjct: 838 LLDTLHKNDCLEQA 851



 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 43/109 (39%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           ++Q + + K+      Y+ +I     V   +       Q+ E G  P V  +  LI G  
Sbjct: 155 VVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G +  A  LL +MK      D   +N  I  F    + D A  F  +
Sbjct: 215 KEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   + G+C     + A             LD   ++ L++  C    +   +
Sbjct: 326 LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVI 385

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL ++M+  G   +++TY  +I + + K+G    A+ LL+++       N   Y++V+ G
Sbjct: 386 ELLEQMLEHGCVPDVITYTTVI-NGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKG 444

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC   RW +A   + Q+ E+G  P  VT+N +IN LCKKG++ +A +LL QM   GC PD
Sbjct: 445 LCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPD 504

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S++TVI G     +TD A   L
Sbjct: 505 LISYSTVIDGLGKAGKTDEALELL 528



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +  +Y   ++G+CK        EI D     G+  +V  Y++++ GLC+  R ++A EL 
Sbjct: 294 DIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELL 353

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M       + VT+N L+    +    +  + LL+ +       ++  Y+ VI+G C+ 
Sbjct: 354 AEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKE 413

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA   L  ++  G  P  ++Y I++ GLC     ++A+ L+ QM E+GC P+  +F
Sbjct: 414 GLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTF 473

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NTVI     K   ++A   LK+
Sbjct: 474 NTVINFLCKKGLVEQAIELLKQ 495



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 10/164 (6%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-----DNW 86
           +  G   D+ +Y+++++G+C    L+ A E+ D+M + G+   +V YN ++      + W
Sbjct: 287 VDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERW 346

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           E+     A  LL  +  +   L+   +++++D  C+ G      + L+Q+ E G VP V+
Sbjct: 347 EQ-----AEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVI 401

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           TY  +ING CK+G+I EA  LL  M   GC P++ S+  V++G 
Sbjct: 402 TYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGL 445



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C  +        ++  ++ G   +V  +++LI  LC     +   ++  +MV
Sbjct: 228 YNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMV 287

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G T ++  Y  ++ D   K+G    A  +L  +     + N+  Y+ V+ GLC   RW
Sbjct: 288 DHGCTPDIRMYATVL-DGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERW 346

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A + L ++ +       VT+NIL++  C+ G++    +LL QM E GC PD  ++ TV
Sbjct: 347 EQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV 406

Query: 187 IQGFLVKNETDRASSFLKK 205
           I GF  +   D A   LK 
Sbjct: 407 INGFCKEGLIDEAVMLLKS 425



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   ID A+         G   +   Y+ ++ GLC+  R  +A +L  +M+
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMI 462

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG +   VT+N +I+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ +
Sbjct: 463 EQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTD 522

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ + + L K+G I    ++   +++     D+  +N VI
Sbjct: 523 EALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVI 582

Query: 188 QGFLVKNETDRASSFL 203
                +  TDRA  FL
Sbjct: 583 SSLCKRGGTDRAIEFL 598



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKI-REIDS------AIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y I + G+C   R +D+       I++G   +   ++++IN LC    +++A+E
Sbjct: 432 RPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIE 491

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 492 LLKQMLLNGCSPDLISYSTVI-DGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 550

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + GR     +  D + +  +    V YN +I+ LCK+G    A + L  M   GC P+ 
Sbjct: 551 SKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNE 610

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 611 STYTILIRGLASEGFVKEAQEMLTE 635



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    N   +   IN +CK   ++ AI+        G   D+  YS++I+GL    +
Sbjct: 461 MIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGK 520

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA+EL + MV +G++   + Y+  I     K+GR +  + +   ++      +  +Y+
Sbjct: 521 TDEALELLNVMVNKGMSPNTIIYSS-IASALSKEGRINRVIQMFDNIQDVTIRSDAVLYN 579

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI  LC+ G  + A + L  +   G +P   TY ILI GL  +G + EA ++L ++  K
Sbjct: 580 AVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSK 639

Query: 175 G 175
           G
Sbjct: 640 G 640



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 44/235 (18%)

Query: 15  YGIRINGMCKIREIDSAIKKGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y   ++G C+  ++ SA +    + V    + Y  ++  LC   R+ +A+ + D+M  +G
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRG 145

Query: 71  ITAELVTYNPLIHDNWEKQGRF---SAMALLQTLE------------------------- 102
                  Y+ ++     + G     SA+ +LQ L                          
Sbjct: 146 CAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSV 205

Query: 103 -------RD-----KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
                  RD       + ++  Y+ V+ GLC   RW   +  ++++   G  P VVT+N 
Sbjct: 206 DEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNT 265

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI  LC+ G+     ++L QM + GC PD   + TV+ G   +   + A   L +
Sbjct: 266 LIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDR 320


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I+ A+        KGI + V+ Y+SLING C    L  A  L   M
Sbjct: 375 TYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM 434

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+T    +Y+PLI          S M L + +       N   ++ +I+G C+  + 
Sbjct: 435 VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKM 494

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +  D++ +  ++P  VT+N++I G C  G I +A +L  QM E G  PD+ ++ ++
Sbjct: 495 DEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554

Query: 187 IQGFLVKNETDRASSFL 203
           I G  + +   +A+ F+
Sbjct: 555 ISGLCLTSGVSKANEFV 571



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +VF Y++LI+ LC   R  +A  LF +M  +G+    VTY  LIH   ++     A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +     ++ +  Y+ +I+G C+ G  + AR  L  + ++GL P   +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G +    +L  +M E+G   ++ +F  +I GF    + D A+    K
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK    D A +       +G+  +   Y+ LI+ LC    +++A+ LF
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM  +GI   +  YN LI + + KQG    A  LL  + ++        YS +I GLCR
Sbjct: 397 DKMRDKGIKVTVYPYNSLI-NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G      +   +++E+G+     T+  LING CK   + EA +L  +M +    P+  +
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 183 FNTVIQGF-LVKN 194
           FN +I+G+ LV N
Sbjct: 516 FNVMIEGYCLVGN 528



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G   +   ++ LIN LC    L  A  L  +M+A  +     TYN  + D +  
Sbjct: 677 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFL-DYFAT 735

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L +     +  +I  ++++I GLC+ G+ +EA   + +++E G  P  ++Y
Sbjct: 736 EGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISY 795

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +I+ LCK G I +A +L  +M  KG  PD  ++N  I+   V  E+D+A
Sbjct: 796 STIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 2   DLTEQRFKGNFH----VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           DL ++  +   H    VY   I   C+ R +D A         +G+      Y+ L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   R++EAVE+ + MV  G+TA+ VTY  L++     +    A+ +   + R  +  + 
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              S +ID L +    EEA     +L + G+VP V  YN LI+ LCK     +AD+L  +
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  +G  P+  ++  +I   
Sbjct: 364 MAGRGLEPNEVTYAILIHAL 383



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNR 55
           + E   K + + Y   I+G+C      K  E  + ++     L+ F  ++L+ G     R
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 598

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             E   L+D+M  +G+  +LV++  +++   ++  +  +  L + ++    + +   Y+ 
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID L +     +A    DQ+   G  P  VT+ +LIN LCK G +  A+ L  +M    
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  ++N  +  F  + + ++A
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKA 742



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N + +   ING CK +++D A       I   +  +   ++ +I G C   
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVG 527

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+MV  G+  +  TY  LI       G   A   +  LE     LN    +
Sbjct: 528 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 587

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G  R GR+ E     D+++ +G+   +V++ I++    K+    ++  L  +MKE+
Sbjct: 588 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD   +  +I   
Sbjct: 648 GVKPDDIFYTCMIDAL 663



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 47/229 (20%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           E RF   +H++             D    +G+ LD+  ++ ++      +  +++  LF 
Sbjct: 596 EGRFTETYHLW-------------DEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFR 642

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  QG+  + + Y  +I    +++    A+     +  D Y  N   ++++I+ LC+ G
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 125 RWEEAR----------------------------------KKLDQLSEKGLVPGVVTYNI 150
               A                                   K L     +G +  +V++NI
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI GLCK G I EA  L+ ++ E G  PD  S++T+I       + ++A
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKA 811



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 35/168 (20%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           M K +++ SA+ +G    +  ++ LI GLC   +++EA++L  K+   G + + ++Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           IH+                                   LC++G   +A +  +++  KGL
Sbjct: 799 IHE-----------------------------------LCKMGDINKAFELWNEMLYKGL 823

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            P VV YNI I      G   +A  +   M   G  P+  ++  ++ G
Sbjct: 824 KPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI ++ +  S ++  L    +   A +LFDKM+  G+  +   Y   I    E + 
Sbjct: 154 SLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRN 213

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L+  +E +  + +   Y++++ GLC+  R +EA +  + +   G+    VTY  
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+ G C+   +  A ++   M   G  P   + + +I     K   + A S   K
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 118/214 (55%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + + +VY   I+  C+   +       D  I +GI  +   + +LI+G+C   
Sbjct: 277 EMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAG 336

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +++ A  L ++M  +G+   +V +N ++ D + K+G    A  L   +ER  +E ++  Y
Sbjct: 337 QMEAAEILLEEMQCKGVDLNVVIFNTMM-DGYCKRGMMDEAFRLQDIMERKGFEADVFTY 395

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++  GLC++ R+EEA++ L+ + EKG+ P VVT    I   C++G + E ++ L  +++
Sbjct: 396 NILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEK 455

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G  P+  ++NT+I  +  KNE  + +  LK  M
Sbjct: 456 RGVVPNIVTYNTLIDAY-SKNEKVKQAHXLKAEM 488



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E + KG   N  ++   ++G CK   +D A +       KG   DVF Y+ L +GLC 
Sbjct: 345 LEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCK 404

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            +R +EA  + + MV +G+   +VT    I    ++         L+ +E+     NI  
Sbjct: 405 LHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVT 464

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +ID   +  + ++A     ++ EKGL+P V TY  LI+G C    + EA KL  +M 
Sbjct: 465 YNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEML 524

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            KG   +  ++  +I G   +   D A
Sbjct: 525 VKGIRGNVKTYTAIISGLSKEGRADEA 551



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAV-ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +G+   VF Y++L+N  C   + +E V E+   M  +G+ A LVTY  LI      +   
Sbjct: 211 RGVVPTVFTYNTLLNA-CVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIG 269

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  + + +     E+++ VY+ +I   CR G    A    D++  +G+VP   T+  LI
Sbjct: 270 EAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALI 329

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G+CK G +  A+ LL +M+ KG   +   FNT++ G+  +   D A
Sbjct: 330 SGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEA 376



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 14/214 (6%)

Query: 2   DLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           D+ E++ F+ +   Y I  +G+CK+   + A       ++KG+  +V   ++ I   C  
Sbjct: 381 DIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQE 440

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEV 112
             L E       +  +G+   +VTYN LI D + K  +      L+    +K  L ++  
Sbjct: 441 GNLAEPERFLRNIEKRGVVPNIVTYNTLI-DAYSKNEKVKQAHXLKAEMVEKGLLPDVFT 499

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G C V + +EA K  +++  KG+   V TY  +I+GL K+G   EA KL  +M 
Sbjct: 500 YTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMM 559

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
             G  PD   F  ++ G L K  +  A   LK+N
Sbjct: 560 RMGLIPDDRVFEALV-GSLHKPSSHAA---LKQN 589



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 50  LCTFNRL-KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108
           +C  NR+ ++A+++FD ++ +G+  E  +      +  E   RF      + +E  + ++
Sbjct: 125 VCADNRMFRDALKVFDYVMEKGLVVEGRSCFXKKCNKVELCVRF----FRRMVESGRVDI 180

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            ++  ++V+D LCR G    A++ +++++ +G+VP V TYN L+N    +      D++L
Sbjct: 181 GVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEIL 240

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
             M+ +G      ++  +I+ +
Sbjct: 241 GLMEREGVVASLVTYTILIEWY 262



 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 135 QLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           ++ E G V  GV +  I+++ LC++G +  A +L+ +M  +G  P   ++NT++   +V+
Sbjct: 171 RMVESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVR 230

Query: 194 NETDRASSFL 203
            + +     L
Sbjct: 231 KDREGVDEIL 240


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+   I+G C   ++ +A        K+G+  D   +++LINGLC    LKEA  +  +M
Sbjct: 359 VFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEM 418

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+  ++VTY  LI D + K+G    A  +   +   +   N+  Y+ + DGLC+ G 
Sbjct: 419 VDKGLDVDVVTYTVLI-DGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD 477

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + L ++  KGL   V TYN LINGLCK G + +A +++ +M+  G   D  ++ T
Sbjct: 478 VRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTT 537

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I       E DRA + L++
Sbjct: 538 LIDTLCKSGEFDRAHNMLQE 557



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 98/186 (52%), Gaps = 7/186 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G CK        R  +  + + +  +V  Y++L +GLC    ++ A EL  +M
Sbjct: 429 TYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEM 488

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   + TYN LI+   +      AM ++  +E   +  ++  Y+ +ID LC+ G +
Sbjct: 489 CNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEF 548

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L ++ +KG+ P + TYN+L+NG C  G +    KLL  M EK   P+  ++N++
Sbjct: 549 DRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSL 608

Query: 187 IQGFLV 192
           ++ + +
Sbjct: 609 MKQYCI 614



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  +R   N   Y    +G+CK  ++ +A         KG+ L+V+ Y+SLINGLC F 
Sbjct: 452 EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFG 511

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L++A+ +  +M A G   ++ TY  LI D   K G F  A  +LQ +     + +I  Y
Sbjct: 512 NLEQAMRIMTEMEAAGHRTDVYTYTTLI-DTLCKSGEFDRAHNMLQEMLDKGIKPSIATY 570

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++++G C  GR E  +K L+ + EK + P VVTYN L+   C    +    ++   M  
Sbjct: 571 NVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHS 630

Query: 174 KGCFPDSTSFNTVIQG 189
           +   P+  ++N +I+G
Sbjct: 631 QEVAPNENTYNILIKG 646



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 83/152 (54%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y ++++G C    L+ AV+L D+M A+G+ +    Y  +I     K     A+ +L
Sbjct: 286 DVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVL 345

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +      L+  V++ VI G C  G    AR+  +++ ++GL    VT+  LINGLC+ 
Sbjct: 346 EDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRA 405

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + EAD++L +M +KG   D  ++  +I G+
Sbjct: 406 GELKEADRVLQEMVDKGLDVDVVTYTVLIDGY 437



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ++G C   E+++A+K       KG+  +  VY+S+I  LC   ++ +A+ + + M
Sbjct: 289 TYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDM 348

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G+  + V +  +I     K    +A  L + +++     +   ++ +I+GLCR G  
Sbjct: 349 TMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGEL 408

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++ +KGL   VVTY +LI+G CK+G ++EA ++  +M  +   P+  ++  +
Sbjct: 409 KEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTAL 468

Query: 187 IQGFLVKNETDRASSFLKK 205
             G   + +   A+  L +
Sbjct: 469 SDGLCKQGDVRAANELLHE 487



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 3/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  ++ L+  L +  RLK+A + FD+M +     ++VTY  ++H    +    +A+ LL
Sbjct: 254 NVCSHNILLKALLSAGRLKDACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLL 310

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +     E N  VY+ VI  LC  G+  +A + L+ ++  G+    V +  +I+G C K
Sbjct: 311 DEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSK 370

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A +L  +M+++G   D  +   +I G     E   A   L++
Sbjct: 371 GDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQE 417



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + Y   I+ +CK  E D A       + KGI   +  Y+ L+NG C   R++   +
Sbjct: 529 RTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKK 588

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L + M+ + +   +VTYN L+      +   S   + + +   +   N   Y+++I G C
Sbjct: 589 LLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHC 648

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPD 179
           +    +EA     ++ EKGL     +Y+ LI  L KK    EA     +M+ +G    PD
Sbjct: 649 KARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPD 708

Query: 180 STSF 183
             SF
Sbjct: 709 VYSF 712



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K +   Y + +NG C    ++         ++K +  +V  Y+SL+   C   
Sbjct: 557 EMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDK 616

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K   E++  M +Q +     TYN LI  + + +    A+   Q +      L    YS
Sbjct: 617 NMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYS 676

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILIN 153
            +I  L +  ++ EAR   D++  +GL   P V ++ + I+
Sbjct: 677 ALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDIS 717


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 10/204 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG       YG  I+G+ KI  +D A         K + L+V VYSSLI+G   
Sbjct: 644 LEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGK 703

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             R+ EA  + ++++ +G+T    T+N L+    + +    A+   Q ++  K   N   
Sbjct: 704 VGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVT 763

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS++++GLC+V ++ +A     ++ ++GL P  +TY  +I+GL + G ++EA  L  + K
Sbjct: 764 YSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFK 823

Query: 173 EKGCFPDSTSFNTVIQGFLVKNET 196
             G  PDS  +N +I+G    N+ 
Sbjct: 824 SSGGIPDSACYNAMIEGLSNANKA 847



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 8/179 (4%)

Query: 19  INGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I  +CK   +D A++    LD       V+ Y+++I G  +  +  EA  L ++   +G 
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGC 373

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              ++ YN ++     K     A+ +L+ ++ D    N+  Y+++ID LC+ G  E A K
Sbjct: 374 IPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAP-NLTSYNILIDMLCKAGELEAALK 432

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             D + E GL P ++T NI+I+ LCK   + EA  + + +  K C PDS +F ++I G 
Sbjct: 433 VQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGL 491



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+ LD   Y+ +I+G C   ++ +A +L ++M  +G+   +VTY  +I D   K  R 
Sbjct: 614 EQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVI-DGLAKIDRL 672

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L +  +    +LN+ VYS +IDG  +VGR +EA   L++L +KGL P   T+N L
Sbjct: 673 DEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCL 732

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           ++ L K   I EA      MK   C P+  +++ ++ G     + ++A  F
Sbjct: 733 LDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVF 783



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------------------------------------- 33
           N   Y I I+ +CK  E+++A+K                                     
Sbjct: 410 NLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIF 469

Query: 34  ----KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
                 +C  D   + SLI+GL    ++ +A  L++KM+  G T   V Y  LI + ++ 
Sbjct: 470 LGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKC 529

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
             +     + + +       ++ + +  +D + + G  E+ R   +++  +GL P V +Y
Sbjct: 530 GRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSY 589

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +ILI+GL K G   +  KL  +MKE+G   D+ ++N VI GF    + ++A   L++
Sbjct: 590 SILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEE 646



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 4/178 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G   D+ + ++ ++ +     +++   LF+++ AQG+T ++ +Y+ LIH     +G 
Sbjct: 543 MHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLV--KGG 600

Query: 92  FS--AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           FS     L   ++     L+   Y++VIDG C+ G+  +A + L+++  KGL P VVTY 
Sbjct: 601 FSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYG 660

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +I+GL K   + EA  L  + K K    +   ++++I GF      D A   L++ M
Sbjct: 661 SVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELM 718



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G   +  VY+SLI       R ++  +++ +M+ +G + +L+  N  + D   K G 
Sbjct: 508 LDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYM-DCVFKAGE 566

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
                AL + ++      ++  YS++I GL + G  ++  K   ++ E+GL      YNI
Sbjct: 567 IEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNI 626

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +I+G CK G + +A +LL +MK KG  P   ++ +VI G    +  D A
Sbjct: 627 VIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEA 675



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 9/206 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  +  Y   I  +    E D  +       + G  + V ++++LI       R+  A
Sbjct: 197 KFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAA 256

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +    A+LV YN  I D + K G+   A      L+      +   ++ +I 
Sbjct: 257 LSLLDEMKSNSFNADLVLYNVCI-DCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIG 315

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  ++L     VP V  YN +I G    G   EA  LL + K KGC P
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
              ++N ++     K + + A   L+
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILE 401



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L   +     + L  +M   G    +  +  LI   + ++GR  +A++LL  
Sbjct: 204 AYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLIC-VFAREGRVDAALSLLDE 262

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ + +  ++ +Y++ ID   +VG+ + A K   +L  +GLVP  VT+  +I  LCK   
Sbjct: 263 MKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAER 322

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
           + EA +L  ++      P   ++NT+I G+    + + A S L++ 
Sbjct: 323 VDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQ 368



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+K     ++  Y+ LI+ LC    L+ A+++ D M   G+   ++T N +I    + Q 
Sbjct: 402 AMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQR 461

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A ++   L+      +   +  +IDGL R G+  +A    +++ + G  P  V Y  
Sbjct: 462 LDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTS 521

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI    K G   +  K+  +M  +GC PD    N  +       E ++  +  ++
Sbjct: 522 LIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEE 576



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    V  Y+ ++  L    +++EA+ + + M        L +YN LI D   K G  
Sbjct: 370 RKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILI-DMLCKAGEL 427

Query: 93  SAMALLQ-TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            A   +Q +++      NI   +++ID LC+  R +EA      L  K   P  VT+  L
Sbjct: 428 EAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSL 487

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           I+GL + G + +A  L  +M + G  P++  + ++I+ F 
Sbjct: 488 IDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFF 527


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I I+ +CK R +  A++       +GI  +V  YSSLI GLC   RL +A     +M ++
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            I   ++T++ LI D + K+G+ S + ++ + + +   + N+  YS +I GLC   R +E
Sbjct: 183 KINPNVITFSALI-DAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 241

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A K LD +  KG  P VVTY+ L NG  K   + +  KLL  M ++G   ++ S NT+I+
Sbjct: 242 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIK 301

Query: 189 GFLVKNETDRA 199
           G+    + D A
Sbjct: 302 GYFQAGKIDLA 312



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +   I +N  C+  +  SA+       K GI  D+   SSL+NG C  N +K+AV + 
Sbjct: 47  DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVA 106

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++V    LI    + +    A+ +L+ ++      N+  YS +I GLC+ 
Sbjct: 107 GQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKS 166

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  +A ++L ++  K + P V+T++ LI+   K+G + + D +   M +    P+  ++
Sbjct: 167 GRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTY 226

Query: 184 NTVIQGFLVKNETDRASSFL 203
           +++I G  + N  D A   L
Sbjct: 227 SSLIYGLCMHNRVDEAIKML 246



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +     N   Y   I G+C    +D AIK       KG   +V  YS+L NG    +R
Sbjct: 214 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 273

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + + ++L D M  +G+ A  V+ N LI   ++      A+ +   +  +    NI  Y++
Sbjct: 274 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 333

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GL   G  E+A  + + + +      ++TY I+I+G+CK  M+ EA  L  ++K K 
Sbjct: 334 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 393

Query: 176 CFPDSTSFNTVIQGFL---VKNETDRASSFLKKNM 207
             PD  ++  +I       ++ E D  + F +K++
Sbjct: 394 VEPDFKAYTIMIAELNRAGMRTEADALNRFYQKHV 428



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 92/179 (51%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           + I++A    I  D++  + L+N  C   +   A+    KM+  GI  ++VT + L++  
Sbjct: 34  KRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGF 93

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A+ +   +E+   + ++ V +++ID LC+      A + L ++ ++G+ P V
Sbjct: 94  CLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNV 153

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           VTY+ LI GLCK G + +A++ L +M  K   P+  +F+ +I  +  + +  +  S  K
Sbjct: 154 VTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYK 212


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  +ID A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 197 DVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 256

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q ++A+L+TYN LI+   +K     A  L+  +     + +   Y+ +IDG C+ 
Sbjct: 257 KQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKE 316

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A +   ++ ++ +    V Y  LI+GLC++G  ++A+K+L +M   G  PD+ ++
Sbjct: 317 GDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 376

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +    S  LK+
Sbjct: 377 TMIINEFCKKGDVWTGSKLLKE 398



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG  ++ ++D   +        G+  DV+ YS LINGLC  +++  A ELFD+M+ +G+
Sbjct: 170 MNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGL 229

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI D   K GR   AM + + +       ++  Y+ +I GLC+ G  ++A+
Sbjct: 230 VPNGVTFTTLI-DGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQ 288

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +D++  KGL P  +TY  LI+G CK+G +  A +   +M ++    D   + T+I G 
Sbjct: 289 NLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGL 348

Query: 191 LVKNETDRASSFLKK 205
             +  +  A   L++
Sbjct: 349 CQEGRSVDAEKMLRE 363



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  EI       D+  K G+   V  +++L+NG     
Sbjct: 118 EILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLG 177

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 178 DLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFT 237

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L   ++TYN LI GLCKKG + +A  L+ +M+ K
Sbjct: 238 TLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMK 297

Query: 175 GCFPDSTSFNTVIQG 189
           G  PD  ++ T+I G
Sbjct: 298 GLKPDKITYTTLIDG 312



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 42/183 (22%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    +   Y   I G+CK  +       ID    KG+  D   Y++LI+G C    
Sbjct: 259 MLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGD 318

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ A E   +M+ + I                                    L+  VY+ 
Sbjct: 319 LETAFEHRKRMIQENI-----------------------------------RLDDVVYTT 343

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ GR  +A K L ++   GL P   TY ++IN  CKKG +    KLL +M+  G
Sbjct: 344 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 403

Query: 176 CFP 178
             P
Sbjct: 404 HVP 406



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
            + +++  G  A L  +N L+H  + K+G    A ++   + +     ++  ++ +++G 
Sbjct: 115 FYKEILECGYPASLYFFNILMH-RFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGY 173

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R+G  +E  +    +   G+ P V TY++LINGLCK+  I  A++L  +M +KG  P+ 
Sbjct: 174 IRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNG 233

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F T+I G       D A    K+
Sbjct: 234 VTFTTLIDGHCKNGRVDLAMEIYKQ 258



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 18/178 (10%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQ------------------GITAELVTYNPL 81
           ++ Y ++I+ LCT   L EA  L   +V++                   + +++  ++ L
Sbjct: 5   LYSYCTMIHFLCTHQMLPEAKSLIQVVVSRKGKGSASAVFAAILETKGTLRSDIYVFSGL 64

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           I    E      A+   +     K+ +  +    V++ L ++  ++       ++ E G 
Sbjct: 65  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGY 124

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +  +NIL++  CK+G I  A  +   + + G  P   SFNT++ G++   + D  
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 182


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   YG  ++G CK   ++ A K       +G   +  VY +LI+GLC   +L EA E
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +M   G  A L TY+ LI   ++ + +  A  +L  +  +    N+ +Y+ +IDGLC
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +VG+ +EA K +  + EKG  P VVTY  +I+G    G I    +LL +M  KG  P+  
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  +I         D A + L++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEE 839



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           Q F  +   Y   +N +C   +++ A        + G+  DV+ Y+ +++  C    +++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A + F++M   G T  +VTY  LIH   + +    A  L +T+  +    NI  YS +ID
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 119 GLCRVGRWEEA-------------------RKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           G C+ G+ E+A                    K+ D  SE+   P VVTY  L++G CK  
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER---PNVVTYGALLDGFCKSH 653

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + EA KLL  M  +GC P+   ++ +I G     + D A
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 693



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 86/174 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L+    SS    LC+  + ++A  +  +M+ QG   +  TY+ +++        
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L + ++R     ++  Y++++D  C+ G  E+ARK  +++ E G  P VVTY  L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+   K   +  A++L   M  +GC P+  +++ +I G     + ++A    ++
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI--------------------HDNWEKQGR---- 91
           ++  +EL ++M ++G+    VTY  LI                      +W         
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKG 140
                      ++ LL  + +D     + VY L+ID L +  R E A + L++++     
Sbjct: 855 VIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 914

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LV    TYN LI  LC    +  A +L  +M +KG  P+  SF ++I+G    ++   A
Sbjct: 915 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 77  TYNPLIHDNWEKQGRFSAMAL------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           TYN LI   + K  R  + +L      L  L  D + L    YSL     C+VG+W EA 
Sbjct: 237 TYNCLIQ-AFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSL-----CKVGKWREA- 289

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  +  +  VP  V Y  LI+GLC+  +  EA   L +M+   C P+  +++T++ G 
Sbjct: 290 --LTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347

Query: 191 LVKNETDRASSFLKKNM 207
           L K +  R    L   M
Sbjct: 348 LNKKQLGRCKRVLNMMM 364



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMV-----AQGITAELVTYNPLIHDNWEKQGRFSAMA 96
            Y+ LI      +RL  A  +  +M        G T     Y+      W +     A+ 
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWRE-----ALT 291

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L++T   + +  +   Y+ +I GLC    +EEA   L+++     +P VVTY+ L+ G  
Sbjct: 292 LVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            K  +    ++L  M  +GC+P    FN+++  +    +   A   LKK
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 397



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+ LI+GLC  +  +EA++  ++M A      +VTY+ L+     K+       +L
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +  +    + ++++ ++   C  G    A K L ++ + G +PG V YNILI  +C  
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420

Query: 159 GMIMEADKLLVQMKEKG 175
              +  D  L+ + EK 
Sbjct: 421 KDSLNCD--LLDLAEKA 435



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 43  YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y  +I G   FN+   E++ L D+ + Q  TA  ++   L+ DN  K  R   MAL    
Sbjct: 852 YRKVIEG---FNKEFIESLGLLDE-IGQDDTAPFLSVYRLLIDNLIKAQRLE-MALRLLE 906

Query: 102 ERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           E   +   +      Y+ +I+ LC   + E A +   ++++KG++P + ++  LI GL +
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966

Query: 158 KGMIMEADKLL 168
              I EA  LL
Sbjct: 967 NSKISEALLLL 977



 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            Y+SLI  LC  N+++ A +LF +M  +G+  E+ ++  LI   +       A+ LL
Sbjct: 921 TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 15/215 (6%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFN 54
           E + KG   +   +   I G C  R++D A+K         C LD    S+LI GLC   
Sbjct: 106 EMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRER 165

Query: 55  RLKEAVELFDKMVAQGITA---ELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI 110
           R+ EA ELF +M  +   A   ++VTY  LI D + K G    AM +L  +E  K   N+
Sbjct: 166 RIGEAYELFQEMEMREDGAWKPDVVTYTALI-DGFCKSGNLEKAMKMLGVMEGRKCVPNV 224

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             YS ++ GLC+ G  ++A     +++ KG VP VVTY  LI+GLC    +  A  L+ +
Sbjct: 225 VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDE 284

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M    C  D+ S+N ++ G+      + A    K+
Sbjct: 285 MTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKE 319



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           +K +   Y   I+G CK   ++ A+K       +    +V  YSSL++GLC    L +A+
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +LF +M ++G    +VTY  LIH         +A  L+  +       +   Y+ ++DG 
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-EKGCFPD 179
           CR+GR EEA++   +++ K  +P  +TY  L+ G C    + EA  LL  MK   G  PD
Sbjct: 305 CRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD 364

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             +++ V+ G+        A+ F+++
Sbjct: 365 VVTYSIVVAGYSRAKRFVEAAEFIQE 390



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 48/233 (20%)

Query: 14  VYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y   ING CK  E+D A         + G+  DV  Y+S+++GLC   ++  A E+  +
Sbjct: 47  TYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVRE 106

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGR--------------------FSAMALLQTLERDK 105
           M  +G+  +  T++ LI   W    +                     S+ AL+  L R++
Sbjct: 107 MKLKGVEPDKFTFSALIT-GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRER 165

Query: 106 -----YEL--------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                YEL              ++  Y+ +IDG C+ G  E+A K L  +  +  VP VV
Sbjct: 166 RIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 225

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           TY+ L++GLCK G + +A  L  +M  KGC P+  ++ T+I G    ++ D A
Sbjct: 226 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 14/186 (7%)

Query: 14  VYGIRINGMCKIREIDSA--------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y   + G C    ++ A           GI  DV  YS ++ G     R  EA E   +
Sbjct: 331 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 390

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+A+ +    VTY+ LI D   K GR + AM +L+ +++     ++  Y++VI+GLC   
Sbjct: 391 MIARNVAPNAVTYSSLI-DGLCKAGRVNHAMEVLKNVDKP----DVVTYTIVIEGLCGTD 445

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R EEA   L+++  K + P V T+N +I  LC+ G + EA KLLV M   G  P   ++ 
Sbjct: 446 RTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYT 505

Query: 185 TVIQGF 190
           T+++GF
Sbjct: 506 TLLEGF 511



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G+CK  ++D A+        KG   +V  Y++LI+GLC  +++  A  L 
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M A    A+ V+YN L+ D + + GR   A  L + +       +   Y+ ++ G C 
Sbjct: 283 DEMTATCCPADTVSYNALL-DGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 123 VGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             R EEAR  L+ + +  G+ P VVTY+I++ G  +    +EA + + +M  +   P++ 
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 401

Query: 182 SFNTVIQGFLVKNETDRASSFLK 204
           +++++I G       + A   LK
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVLK 424



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 49/243 (20%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y + +NG+CK R    A +        K +  D+  YS++ING C    +  A E+
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 63  FDKMVAQ-GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
             +MV + G+  ++VTY  ++ D   + G+   A  +++ ++    E +   +S +I G 
Sbjct: 68  LREMVTRDGMAPDVVTYTSVV-DGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 121 CRVGRWEEARK----------KLDQLSEKGLV---------------------------- 142
           C   + +EA K          +LD +S   L+                            
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY  LI+G CK G + +A K+L  M+ + C P+  ++++++ G     + D+A   
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 203 LKK 205
            ++
Sbjct: 247 FRR 249



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   I + +  +   YSSLI+GLC   R+  A+E+   +       ++VTY  +I     
Sbjct: 388 IQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNV----DKPDVVTYTIVIEGLCG 443

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ LL+ +   + E ++  ++ VI  LCR+G  +EA K L  ++  GL PG+VT
Sbjct: 444 TDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVT 503

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDST-------SFNTVIQGFLVKNETDRAS 200
           Y  L+ G  + G +  A +L   M+ K     S        +F+ +I+G     E D+A 
Sbjct: 504 YTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAM 563

Query: 201 SFLKK 205
           + +++
Sbjct: 564 AVVEE 568



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 12/204 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           N   Y   I+G+CK   ++ A   +K     DV  Y+ +I GLC  +R +EA+ L ++MV
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMV 458

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + +   + T+N +I           A  LL  +     E  +  Y+ +++G  R GR E
Sbjct: 459 NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 518

Query: 128 EA--------RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            A        RK     S   LVP    ++ LI GLCK   I +A  ++ +++ + C P 
Sbjct: 519 IAYELFEVMRRKAKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEPA 577

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
                 ++ G L    T+ A   +
Sbjct: 578 EEDCLAIVDGLLRAGRTEEAGKLI 601



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I I G+C     + A       + K +   V  ++S+I  LC    + EA +
Sbjct: 428 KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 487

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE-------LNIEVY 113
           L   M A G+   +VTY  L+ + + + GR   A  L + + R   +       +  + +
Sbjct: 488 LLVAMAAHGLEPGMVTYTTLL-EGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAF 546

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +I GLC+    ++A   +++L  +   P       +++GL + G   EA KL+  + +
Sbjct: 547 SALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISK 606

Query: 174 KG 175
            G
Sbjct: 607 VG 608



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P   TYN+++NGLCK  +  +A ++L +M++ K   PD  +++TVI GF  + E DRA
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 200 SSFLKK 205
              L++
Sbjct: 65  CEILRE 70



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +R + +   +   I  +C++ ++D A K        G+   +  Y++L+ G     
Sbjct: 456 EMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTG 515

Query: 55  RLKEAVELFDKMVAQG----ITAELV---TYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           R++ A ELF+ M  +       A LV    ++ LI    + +    AMA+++ L   + E
Sbjct: 516 RMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECE 575

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
              E    ++DGL R GR EEA K ++ +S+ GL
Sbjct: 576 PAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   YG  ++G CK   ++ A K       +G   +  VY +LI+GLC   +L EA E
Sbjct: 595 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 654

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +M   G  A L TY+ LI   ++ + +  A  +L  +  +    N+ +Y+ +IDGLC
Sbjct: 655 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 714

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +VG+ +EA K +  + EKG  P VVTY  +I+G    G I    +LL +M  KG  P+  
Sbjct: 715 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 774

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  +I         D A + L++
Sbjct: 775 TYRVLIDHCCKNGALDVAHNLLEE 798



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           Q F  +   Y   +N +C   +++ A        + G+  DV+ Y+ +++  C    +++
Sbjct: 436 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 495

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A + F++M   G T  +VTY  LIH   + +    A  L +T+  +    NI  YS +ID
Sbjct: 496 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 555

Query: 119 GLCRVGRWEEA-------------------RKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           G C+ G+ E+A                    K+ D  SE+   P VVTY  L++G CK  
Sbjct: 556 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER---PNVVTYGALLDGFCKSH 612

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + EA KLL  M  +GC P+   ++ +I G     + D A
Sbjct: 613 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 652



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 86/174 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L+    SS    LC+  + ++A  +  +M+ QG   +  TY+ +++        
Sbjct: 399 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 458

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L + ++R     ++  Y++++D  C+ G  E+ARK  +++ E G  P VVTY  L
Sbjct: 459 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 518

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+   K   +  A++L   M  +GC P+  +++ +I G     + ++A    ++
Sbjct: 519 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 572



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 694 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 753

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI--------------------HDNWEKQGR---- 91
           ++  +EL ++M ++G+    VTY  LI                      +W         
Sbjct: 754 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 813

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKG 140
                      ++ LL  + +D     + VY L+ID L +  R E A + L++++     
Sbjct: 814 VIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 873

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LV    TYN LI  LC    +  A +L  +M +KG  P+  SF ++I+G    ++   A
Sbjct: 874 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 932



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 77  TYNPLIHDNWEKQGRFSAMAL------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           TYN LI   + K  R  + +L      L  L  D + L    YSL     C+VG+W EA 
Sbjct: 196 TYNCLIQ-AFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSL-----CKVGKWREA- 248

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  +  +  VP  V Y  LI+GLC+  +  EA   L +M+   C P+  +++T++ G 
Sbjct: 249 --LTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 306

Query: 191 LVKNETDRASSFLKKNM 207
           L K +  R    L   M
Sbjct: 307 LNKKQLGRCKRVLNMMM 323



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMV-----AQGITAELVTYNPLIHDNWEKQGRFSAMA 96
            Y+ LI      +RL  A  +  +M        G T     Y+      W +     A+ 
Sbjct: 196 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWRE-----ALT 250

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L++T   + +  +   Y+ +I GLC    +EEA   L+++     +P VVTY+ L+ G  
Sbjct: 251 LVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 307

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            K  +    ++L  M  +GC+P    FN+++  +    +   A   LKK
Sbjct: 308 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 356



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+ LI+GLC  +  +EA++  ++M A      +VTY+ L+     K+       +L
Sbjct: 260 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 319

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
             +  +    + ++++ ++   C  G    A K L ++ + G +PG V YNILI  +C
Sbjct: 320 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSIC 377



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 43  YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y  +I G   FN+   E++ L D+ + Q  TA  ++   L+ DN  K  R   MAL    
Sbjct: 811 YRKVIEG---FNKEFIESLGLLDE-IGQDDTAPFLSVYRLLIDNLIKAQRLE-MALRLLE 865

Query: 102 ERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           E   +   +      Y+ +I+ LC   + E A +   ++++KG++P + ++  LI GL +
Sbjct: 866 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 925

Query: 158 KGMIMEADKLL 168
              I EA  LL
Sbjct: 926 NSKISEALLLL 936



 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
            Y+SLI  LC  N+++ A +LF +M  +G+  E+ ++  LI   +       A+ LL
Sbjct: 880 TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 936


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 2/173 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            GI  + + Y  +INGLC     KEA  L ++M+++G+      Y PLI  +  K+G  S
Sbjct: 449 SGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH-SKEGHIS 507

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A   L+ + +     ++  Y+ +I GL  VGR EEA +   Q+ ++GLVP   TY+ LI
Sbjct: 508 LACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLI 567

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G CK   + +AD+LL QM   G  P++ ++  +++G+   N+ ++ SS L+ 
Sbjct: 568 HGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQS 620



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+C+   ++ A       +  G+  D F Y +L+NGLC   RLKEA  L D+M
Sbjct: 282 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEM 341

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G+   +V Y  L+ D + K+G+ + A  +L  +     + N  +Y  +I GLC++G+
Sbjct: 342 SCSGLKPNVVVYATLV-DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQ 400

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A K L+++ + G  P   TY+ L+ G  +      A +LL +M+  G  P++ ++  
Sbjct: 401 LGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGI 460

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G     E+  A + L++
Sbjct: 461 MINGLCQNGESKEAGNLLEE 480



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   +   CK R+ D+A K       +   ++   Y+ +I+GLC    ++EA    
Sbjct: 244 DVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFK 303

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           ++MV  G++ +  TY  L+ +   K GR   A ALL  +     + N+ VY+ ++DG  +
Sbjct: 304 EEMVDYGLSPDAFTYGALM-NGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMK 362

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+  EA   L+++   G+ P  + Y+ LI GLCK G +  A KLL +M + G  PD+ +
Sbjct: 363 EGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFT 422

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++ ++QG     + D A   L +
Sbjct: 423 YHPLMQGHFQHYDKDGAFELLNE 445



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 42/188 (22%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + H+YGI I  + +   ++ A        K G+  D+ +YSSLI+GLC    +++AV 
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L D+M  +G+                                   E  I  Y+ +IDG C
Sbjct: 687 LLDEMAKEGL-----------------------------------EPGIVCYNALIDGFC 711

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    AR   D +  KGL+P  VTY  LI+G CK G I +A  L   M ++G  PD+ 
Sbjct: 712 RSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAF 771

Query: 182 SFNTVIQG 189
            +N +  G
Sbjct: 772 VYNVLATG 779



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 42/230 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T+     +   Y   I G+  +  I+ A        K+G+  D F YS LI+G C   
Sbjct: 515 NMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTR 574

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL------------- 101
            L++A +L  +M+  G+     TY  L+   ++        ++LQ++             
Sbjct: 575 NLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYG 634

Query: 102 ----------------------ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                                 E++    ++ +YS +I GLC++   E+A   LD+++++
Sbjct: 635 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           GL PG+V YN LI+G C+ G I  A  +   +  KG  P+  ++  +I G
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDG 744



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  VY   ++G  K  +   A       I  G+  +  +Y +LI GLC   +L  A 
Sbjct: 346 LKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRAS 405

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +L ++M+  G   +  TY+PL+  +++   +  A  LL  +       N   Y ++I+GL
Sbjct: 406 KLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGL 465

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  +EA   L+++  +GL P    Y  LI G  K+G I  A + L  M +    PD 
Sbjct: 466 CQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDL 525

Query: 181 TSFNTVIQGFLVKNETDRASSF 202
             +N++I+G       + A  +
Sbjct: 526 FCYNSLIKGLSTVGRIEEAEEY 547



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ YS+ +   C       A ++F++M  +      VTYN +I           A
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
               + +       +   Y  +++GLC+ GR +EA+  LD++S  GL P VV Y  L++G
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDG 359

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             K+G   EA  +L +M   G  P+   ++ +I+G     +  RAS  L +
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNE 410



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 42/240 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  +  K N  +Y   I G  K          +++  K  +  D+F Y+SLI GL T  
Sbjct: 480 EMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVG 539

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEK--------------------- 88
           R++EA E + ++  +G+  +  TY+ LIH      N EK                     
Sbjct: 540 RIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYT 599

Query: 89  ---QGRFSA------MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
              +G F +       ++LQ++     + +  +Y +VI  L R    E A   L ++ + 
Sbjct: 600 DLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 659

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLVP +  Y+ LI+GLCK   + +A  LL +M ++G  P    +N +I GF    +  RA
Sbjct: 660 GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 719



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   GI  ++ TY+  +  + + +   +A  + + + R    +N   Y+++I GLCR G 
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA    +++ + GL P   TY  L+NGLCK G + EA  LL +M   G  P+   + T
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ GF+ + +   A   L +
Sbjct: 356 LVDGFMKEGKAAEAFDILNE 375



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 13/195 (6%)

Query: 15  YGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G C+  +I       DS + KG+  +   Y++LI+G C    + +A +L+  M+
Sbjct: 703 YNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDML 762

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +GI  +   YN L     +      A+ L + +    Y  ++ ++S ++ G C+ GR +
Sbjct: 763 DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQ 821

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS----- 182
           E  K L  + ++ +VP   T   +I    K G + EA ++  ++++K     ST      
Sbjct: 822 ETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLL 881

Query: 183 FNTVIQGFLVKNETD 197
           F  +I   L+  + D
Sbjct: 882 FTDMINKGLIPPKCD 896


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLIN---GLCTFNRL 56
           FD + +Q    N   YG  I+ +CK+  +D AI K        ++ +IN   GLCT  + 
Sbjct: 453 FDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILK--------FNQMINEVYGLCTVEKW 504

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           ++A EL  +M+ QGI  ++V +N L+ D   +     A  L++ + R     ++  Y+ +
Sbjct: 505 EKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTL 564

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DG C  GR +EA K LD +   GL P   TYN L++G CK   I +A  LL +M   G 
Sbjct: 565 VDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGP 624

Query: 177 FPDSTSFNTVIQGFL 191
            PD  ++NT++ G  
Sbjct: 625 TPDVVTYNTILHGLF 639



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   ++G CK R ID A       +  G   DV  Y+++++GL    R  EA 
Sbjct: 589 LKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAK 648

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           EL+  M+      ++ TYN +++   +      A  + Q+L     +L+I  ++++I  L
Sbjct: 649 ELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGAL 708

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+ E+A      +S  GLVP V TY ++   L K+G + E   L   M+E G  P+S
Sbjct: 709 LKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNS 768

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
              N +++ FL + +  RA ++L K
Sbjct: 769 RMLNALVRRFLHRGDISRAGAYLSK 793



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 11/189 (5%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDK 65
            Y I I   C++  ++         +K G  ++  V++ L+ GLC   RL EA   L  +
Sbjct: 197 TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWR 256

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
           M   G T  +V+YN L+     +     A+ LL  +  D+      ++  Y+ VI+G  R
Sbjct: 257 MPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFR 316

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ ++A     Q+ ++G+ P VVTYN +I+GLCK  ++  A  +  QM +KG  P + +
Sbjct: 317 EGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGT 376

Query: 183 FNTVIQGFL 191
           +N +I G+L
Sbjct: 377 YNCLIHGYL 385



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 35/210 (16%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREI-DSAIKKGICLDVFVYSSLINGLCTFN 54
           +++    + +  +Y + ++ +CK       R I DS I+KGI  D  +            
Sbjct: 399 EMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMI------------ 446

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI-EVY 113
              EAV +FDKM  QG++  +V Y  LI D   K GR     L       K+   I EVY
Sbjct: 447 --DEAVCIFDKMRQQGLSPNVVNYGALI-DALCKLGRVDDAIL-------KFNQMINEVY 496

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
                GLC V +WE+A + + ++ ++G+   VV +N L+  LC++G +MEA +L+  M  
Sbjct: 497 -----GLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLR 551

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G  PD  S+NT++ G  +   TD A+  L
Sbjct: 552 VGVRPDVISYNTLVDGHCLTGRTDEAAKLL 581



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE    +    C     YS LI   C   RL+    +F  ++  G     + +N L+  
Sbjct: 184 VRECSDKVAPDRC----TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKG 239

Query: 85  NWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGL- 141
             + +    A   LL  +       N+  Y+ ++ G C   R EEA + L  +++ +GL 
Sbjct: 240 LCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLS 299

Query: 142 -VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P VV+YN +ING  ++G + +A  L +QM ++G  PD  ++NTVI G       DRA 
Sbjct: 300 CPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAK 359

Query: 201 SFLKK 205
           +  ++
Sbjct: 360 AVFQQ 364



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++ING     ++ +A  LF +M+ +GI  ++VTYN +I    + Q    A A+ 
Sbjct: 303 DVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVF 362

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q +     + +   Y+ +I G    G+W+E  + L+++S   L P    Y +L++ LCK 
Sbjct: 363 QQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKN 422

Query: 159 GMIMEADKLLVQMKEKGCFPDS 180
           G   EA  +   +  KG  PD+
Sbjct: 423 GRCTEARNIFDSVIRKGIKPDA 444



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM------ALLQTLER---DKYEL 108
           +A++LFD ++     A +  +N L+       GR S +      +L   + R   DK   
Sbjct: 134 DALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAP 193

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           +   YS++I   CR+GR E        + + G     + +N L+ GLC    + EA  +L
Sbjct: 194 DRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNIL 253

Query: 169 V-QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           + +M E GC P+  S+NT+++GF  +N  + A   L
Sbjct: 254 LWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELL 289



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            ++   R + + + Y I +NG+CK   +D A K       KG+ L +  ++ +I  L   
Sbjct: 652 LNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKG 711

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEV 112
            + ++A++LF  + A G+  ++ TY  LI +N  K+G    + +L   +E +    N  +
Sbjct: 712 GKKEDAMDLFATISAYGLVPDVETYC-LIAENLIKEGSLEELGVLFSAMEENGTAPNSRM 770

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            + ++      G    A   L +L EK       T ++LI+ L  +G   E  +L   + 
Sbjct: 771 LNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLIS-LYSRG---EYQQLAKSLP 826

Query: 173 EKGCFP 178
           EK  FP
Sbjct: 827 EKYRFP 832


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI ++G CK       +  ++ A +KG  LD F YS++INGLC   +L +AV + + M+
Sbjct: 97  YGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMI 156

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G       YN LI+          A+ +L+ +    +   +  YS +I+GLC+  R+ 
Sbjct: 157 KSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFG 216

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   + ++ +KGL P V+TY++LI GLC    + +A +L  Q+  KG  PD    N +I
Sbjct: 217 EAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMI 276

Query: 188 QGF 190
            G 
Sbjct: 277 HGL 279



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             V  YS+LINGLC   R  EA +
Sbjct: 161 KPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+   ++TY+ LI           A  L   +    ++ ++++++++I GLC
Sbjct: 221 LVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +VT+N L+ G  K G    A  +  ++   G  PD  
Sbjct: 281 SVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALVIWARIMRNGLQPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISGAILFL 362



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 6/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  ++R I    K      +     V  ++ ++ GL    +
Sbjct: 15  EIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREGSRSVSSFNIMMRGLFDNAK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + E + +++ M   G   + +TY  L+H   +      ++ +L+  ER    L+   YS 
Sbjct: 75  VDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSA 134

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+  + ++A   L+ + + G  P    YN LINGL       +A ++L +M    
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTTH 194

Query: 176 CFPDSTSFNTVIQGF 190
             P   +++T+I G 
Sbjct: 195 FSPTVVTYSTLINGL 209



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 9/141 (6%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I G+C   +++ A       I KG   DV +++ +I+GLC+  +++ A+ L+  M 
Sbjct: 237 YSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMN 296

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                  LVT+N L+ + + K G F +A+ +   + R+  + +I  Y++ + GLC   R 
Sbjct: 297 RWDCAPNLVTHNTLM-EGFYKDGDFRNALVIWARIMRNGLQPDIISYNITLKGLCSCNRI 355

Query: 127 EEARKKLDQLSEKGLVPGVVT 147
             A   L     K +V  V+T
Sbjct: 356 SGAILFLHDAVCKKIVLTVIT 376


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I+ A+        KGI + V+ Y+SLING C    L  A  L   M
Sbjct: 398 TYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM 457

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+T    +Y+PLI          S M L + +       N   ++ +I+G C+  + 
Sbjct: 458 VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKM 517

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +  D++ +  ++P  VT+N++I G C  G I +A +L  QM E G  PD+ ++ ++
Sbjct: 518 DEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 577

Query: 187 IQGFLVKNETDRASSFL 203
           I G  + +   +A+ F+
Sbjct: 578 ISGLCLTSGVSKANEFV 594



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +VF Y++LI+ LC   R  +A  LF +M  +G+    VTY  LIH   ++     A
Sbjct: 356 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 415

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +     ++ +  Y+ +I+G C+ G  + AR  L  + ++GL P   +Y+ LI G
Sbjct: 416 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 475

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G +    +L  +M E+G   ++ +F  +I GF    + D A+    K
Sbjct: 476 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 526



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK    D A +       +G+  +   Y+ LI+ LC    +++A+ LF
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 419

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM  +GI   +  YN LI + + KQG    A  LL  + ++        YS +I GLCR
Sbjct: 420 DKMRDKGIKVTVYPYNSLI-NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G      +   +++E+G+     T+  LING CK   + EA +L  +M +    P+  +
Sbjct: 479 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 538

Query: 183 FNTVIQGF-LVKN 194
           FN +I+G+ LV N
Sbjct: 539 FNVMIEGYCLVGN 551



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G   +   ++ LIN LC    L  A  L  +M+A  +     TYN  + D +  
Sbjct: 700 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFL-DYFAT 758

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L +     +  +I  ++++I GLC+ G+ +EA   + +++E G  P  ++Y
Sbjct: 759 EGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISY 818

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +I+ LCK G I +A +L  +M  KG  PD  ++N  I+   V  E+D+A
Sbjct: 819 STIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 869



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 2   DLTEQRFKGNFH----VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           DL ++  +   H    VY   I   C+ R +D A         +G+      Y+ L+ GL
Sbjct: 207 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 266

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   R++EAVE+ + MV  G+TA+ VTY  L++     +    A+ +   + R  +  + 
Sbjct: 267 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 326

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              S +ID L +    EEA     +L + G+VP V  YN LI+ LCK     +AD+L  +
Sbjct: 327 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 386

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  +G  P+  ++  +I   
Sbjct: 387 MAGRGLEPNEVTYAILIHAL 406



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNR 55
           + E   K + + Y   I+G+C      K  E  + ++     L+ F  ++L+ G     R
Sbjct: 562 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 621

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             E   L+D+M  +G+  +LV++  +++   ++  +  +  L + ++    + +   Y+ 
Sbjct: 622 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 681

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID L +     +A    DQ+   G  P  VT+ +LIN LCK G +  A+ L  +M    
Sbjct: 682 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 741

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  ++N  +  F  + + ++A
Sbjct: 742 VLPNKFTYNCFLDYFATEGDMEKA 765



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N + +   ING CK +++D A       I   +  +   ++ +I G C   
Sbjct: 491 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVG 550

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+MV  G+  +  TY  LI       G   A   +  LE     LN    +
Sbjct: 551 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 610

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G  R GR+ E     D+++ +G+   +V++ I++    K+    ++  L  +MKE+
Sbjct: 611 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 670

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD   +  +I   
Sbjct: 671 GVKPDDIFYTCMIDAL 686



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 47/229 (20%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           E RF   +H++             D    +G+ LD+  ++ ++      +  +++  LF 
Sbjct: 619 EGRFTETYHLW-------------DEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFR 665

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  QG+  + + Y  +I    +++    A+     +  D Y  N   ++++I+ LC+ G
Sbjct: 666 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 725

Query: 125 RWEEAR----------------------------------KKLDQLSEKGLVPGVVTYNI 150
               A                                   K L     +G +  +V++NI
Sbjct: 726 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 785

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI GLCK G I EA  L+ ++ E G  PD  S++T+I       + ++A
Sbjct: 786 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKA 834



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 41/171 (23%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           M K +++ SA+ +G    +  ++ LI GLC   +++EA++L  K+   G + + ++Y+ +
Sbjct: 762 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 821

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           IH+                                   LC++G   +A +  +++  KGL
Sbjct: 822 IHE-----------------------------------LCKMGDINKAFELWNEMLYKGL 846

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLL---VQMKEKGCFPDSTSFNTVIQG 189
            P VV YNI I      G   E+DK L     M   G  P+  ++  ++ G
Sbjct: 847 KPDVVAYNIFIRWCNVHG---ESDKALGIYTNMIRSGVQPNWDTYRALLSG 894



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI ++ +  S ++  L    +   A +LFDKM+  G+  +   Y   I    E + 
Sbjct: 177 SLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRN 236

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L+  +E +  + +   Y++++ GLC+  R +EA +  + +   G+    VTY  
Sbjct: 237 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 296

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L+ G C+   +  A ++   M   G  P   + + +I     K   + A S   K
Sbjct: 297 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 351


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 9/175 (5%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C++R  D+A       +  G+  DV  YS+LI+GLC+  ++ EA+ + D M+ +G     
Sbjct: 229 CRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNA 288

Query: 76  VTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            TY P++H  +   GR   A  LL T+    +  +   Y+++++ LC+VG +EE    L+
Sbjct: 289 HTYTPIVH-AYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLE 347

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           + + KG  P V+TY+  ++GLCK G I ++  L+ +M   G  P   + N ++ G
Sbjct: 348 ESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDG 402



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 10/196 (5%)

Query: 15  YGIRINGMCKI---REIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + +  +CK+    E+D+ ++    KG   DV  YSS ++GLC   R+ ++  L DKM+
Sbjct: 326 YNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKML 385

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G+    VT N L+         ++A  LL+      ++ N+  Y+ V+  LC   RW 
Sbjct: 386 SNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWL 445

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
              K    +++KG+ P   T+NI+++ LCK G + +A   L  ++ K       ++NT+I
Sbjct: 446 SVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA---LCLLRSKEFVATVITYNTLI 502

Query: 188 QGFLVKNETDRASSFL 203
           +   +  E +     L
Sbjct: 503 RHLSISGEGNEVCLLL 518



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGL-CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
           +D+    G+  D    + L+    C   R   A E+   MVA G+  ++VTY+ LI    
Sbjct: 205 LDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLC 264

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                  A+ +L  +  +  + N   Y+ ++   C  GR  EA++ L+ +   G  P   
Sbjct: 265 SAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTA 324

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN+L+  LCK G   E D LL +   KG  PD  ++++ + G       D++ + + K
Sbjct: 325 TYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDK 383



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+  + N H Y   ++  C   +I E    +++ I  G       Y+ L+  LC    
Sbjct: 279 MLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGA 338

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
            +E   L ++  A+G T +++TY+  + D   K GR   + AL+  +  +  + +    +
Sbjct: 339 FEEVDALLEESTAKGWTPDVITYSSYM-DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLN 397

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DG+CR      A++ L+  +E G    VV YN ++  LC +   +   KL   M +K
Sbjct: 398 ILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKK 457

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P+S +FN V+          +A   L+
Sbjct: 458 GIAPNSWTFNIVVHSLCKLGRLHKALCLLR 487



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           D   ++++   L + +R   A+ + D M A G+  +      L+     +  RF +A  +
Sbjct: 181 DAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEV 240

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ +  +    ++  YS +I GLC  G+  EA   LD + E+G  P   TY  +++  C 
Sbjct: 241 VRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCT 300

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G I EA +LL  M   G  P + ++N +++  
Sbjct: 301 GGRIHEAKRLLNTMIASGFAPSTATYNVLVEAL 333



 Score = 41.6 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 38/161 (23%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-HDNWEKQGR 91
           KKGI  + + ++ +++ LC   RL +A+ L   + ++   A ++TYN LI H +   +G 
Sbjct: 456 KKGIAPNSWTFNIVVHSLCKLGRLHKALCL---LRSKEFVATVITYNTLIRHLSISGEGN 512

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE------------K 139
              + L Q +E      +I  YSLVID LCR  ++  A     Q  E            +
Sbjct: 513 EVCLLLYQMIEGGIAPNDI-TYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIR 571

Query: 140 GLVPG---------------------VVTYNILINGLCKKG 159
           GL+ G                     V  Y  LI  LCK G
Sbjct: 572 GLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNG 612


>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
          Length = 233

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 22/190 (11%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I K    +V  Y++LI G C   R+ E +ELF +M  +G+    VTY  LI   ++    
Sbjct: 6   ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDC 65

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-------RKKLDQ--------- 135
             A  + + +  D    +I  Y++++DGLC+ G+ E+A       +K++ +         
Sbjct: 66  DMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKALVVFGYMQKRMCKAGKVEDGWD 125

Query: 136 ----LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               LS KG+ P VVTY  +I+G CKKG   EA  L  +MKE G  PDS ++NT+I+  L
Sbjct: 126 LFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHL 185

Query: 192 VKNETDRASS 201
              + D+A+S
Sbjct: 186 --RDGDKAAS 193



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 29/204 (14%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G CK + +D  +       ++G+  +   Y++LI GL        A E+F
Sbjct: 13  NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 72

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER---------DKYEL----- 108
            +MV+ G+  +++TYN L+ D   K G+   A+ +   +++         D ++L     
Sbjct: 73  KEMVSDGVPPDIMTYNILL-DGLCKNGKLEKALVVFGYMQKRMCKAGKVEDGWDLFCSLS 131

Query: 109 ------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 N+  Y+ +I G C+ G  EEA     ++ E G +P   TYN LI    + G   
Sbjct: 132 LKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHLRDGDKA 191

Query: 163 EADKLLVQMKEKGCFPDSTSFNTV 186
            + +L+ +M+      D++++  V
Sbjct: 192 ASAELIKEMRSCRFAGDASTYGLV 215



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 14  VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+G     MCK  +++       S   KG+  +V  Y+++I+G C     +EA  LF KM
Sbjct: 106 VFGYMQKRMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKM 165

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              G   +  TYN LI  +     + ++  L++ +   ++  +   Y LV D L
Sbjct: 166 KEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 219


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y   I   CK+R+++SA K        G  L+V  Y++LI GLC    ++EA    
Sbjct: 242 DVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYK 301

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G+  +  TY  +I+   ++     A  LL  +       N+ VYS +IDG  R 
Sbjct: 302 KEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQ 361

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  +EA K + ++S  G+ P  +TY+ LI GLCK G +  A ++L QM + G   D+ ++
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421

Query: 184 NTVIQGFLVKNETDRA 199
           N VI+G L ++  + A
Sbjct: 422 NLVIEGHLRQHNKEEA 437



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K GI  +V+ YS +INGLC     + A  L ++M+A G+      Y PLI   + ++G F
Sbjct: 446 KGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI-SGYCREGSF 504

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           S A   L+ + R+    ++  Y+ +I GL  VG+ +EA +  D++ EKG  P   TY  L
Sbjct: 505 SLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGL 564

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G    G + +A++LL QM   G  P+   +  +++G+   +  ++ SS LK 
Sbjct: 565 IHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKS 618



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--KK-----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C+   I+ A   KK     G+  D F Y ++INGLC   R  +A  L 
Sbjct: 277 NVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLL 336

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D+M   G+   +V Y+ LI D + +QG    A  +++ +     + N   Y  +I GLC+
Sbjct: 337 DEMSCAGLMPNVVVYSTLI-DGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCK 395

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +GR   A + L Q+++ G +   +TYN++I G  ++    EA  LL +M++ G  P+  +
Sbjct: 396 LGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYT 455

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           ++ +I G     E++RAS  L++
Sbjct: 456 YSIIINGLCQIGESERASGLLEQ 478



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   I+G  +    D A K        G+  +   Y +LI GLC   R+  A  + 
Sbjct: 347 NVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL 406

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G  A+ +TYN +I  +  +  +  A  LL  + +     N+  YS++I+GLC++
Sbjct: 407 KQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQI 466

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A   L+Q+   GL P    Y  LI+G C++G    A + L +M  +   PD   +
Sbjct: 467 GESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCY 526

Query: 184 NTVIQGFLVKNETDRASSF 202
           N++I G     + D A  +
Sbjct: 527 NSLIIGLSNVGKMDEAIEY 545



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  DV+ YS+LI   C    L+ A ++ ++M   G +  +VTYN LI           A
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
               + +E      +   Y  +I+GLC+ GR ++A+  LD++S  GL+P VV Y+ LI+G
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             ++G   EA K++ +M   G  P+  +++ +I+G        RAS  LK+
Sbjct: 358 FMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ING+CK    D A          G+  +V VYS+LI+G        EA ++  +M
Sbjct: 315 TYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEM 374

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A G+    +TY+ LI     K GR   A  +L+ + +  Y  +   Y+LVI+G  R   
Sbjct: 375 SAAGVQPNKITYDNLIR-GLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHN 433

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA   L+++ + G+ P V TY+I+INGLC+ G    A  LL QM   G  P++  +  
Sbjct: 434 KEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAP 493

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G+  +     A   LKK
Sbjct: 494 LISGYCREGSFSLACETLKK 513



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N  VY   I+G C+          +    ++ +  D++ Y+SLI GL    ++ EA+
Sbjct: 484 LKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAI 543

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E +D+M+ +G      TY  LIH          A  LL  +       N  +Y+ +++G 
Sbjct: 544 EYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGY 603

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            +    E+    L  + EKGL+P    Y I+I+ L   G +  A  +L  +++ G  PDS
Sbjct: 604 FKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDS 663

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
             + ++I GF    + ++A   L
Sbjct: 664 LIYGSLISGFCKAADMEKAVGLL 686



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 75/140 (53%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   GI+ ++ TY+ LI    + +   SA  +++ +      LN+  Y+ +I GLCR G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA     ++ + GLVP   TY  +INGLCK+G   +A  LL +M   G  P+   ++T
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I GF+ +   D A   +K+
Sbjct: 354 LIDGFMRQGNADEAFKIVKE 373



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ F+ N   YG  I+G      ++ A       +  G+  + F+Y+ ++ G    +
Sbjct: 548 EMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSD 607

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            L++       M+ +G+  +   Y  +IH N    G   +A+++L  +E++    +  +Y
Sbjct: 608 NLEKVSSTLKSMLEKGLMPDNRLYGIVIH-NLSSSGHMQAAVSVLSVIEKNGLVPDSLIY 666

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I G C+    E+A   LD++++KG+ PG+  YN LI+G CK   I  A  +   +  
Sbjct: 667 GSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIIC 726

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  P+  ++ T+I G+
Sbjct: 727 KGLPPNCVTYTTLIDGY 743



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    +  +YGI I+ +     + +A+       K G+  D  +Y SLI+G C    
Sbjct: 619 MLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAAD 678

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +++AV L D+M  +GI   +  YN LI D + K    S A  +  ++       N   Y+
Sbjct: 679 MEKAVGLLDEMAKKGIEPGISCYNALI-DGFCKSDDISHARNIFNSIICKGLPPNCVTYT 737

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G   +A    +++  +G+ P    Y++L  G    G + +A  +  +M  +
Sbjct: 738 TLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIAR 797

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G +   +SFNT++ GF  + +      FL   M
Sbjct: 798 G-YAIISSFNTLVHGFCKRGKLQETVKFLHVMM 829



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + S ++KG+  D  +Y  +I+ L +   ++ AV +   +   G+  + + Y  LI    +
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCK 675

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ LL  + +   E  I  Y+ +IDG C+      AR   + +  KGL P  VT
Sbjct: 676 AADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVT 735

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           Y  LI+G CK G I +A  L  +M  +G  PD+  ++ +  G
Sbjct: 736 YTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAG 777



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +YG  I+G CK  +++ A+       KKGI   +  Y++LI+G C  + +  A  +F+ +
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G+    VTY  LI D + K G    A+ L   +  +    +  VYS++  G    G 
Sbjct: 725 ICKGLPPNCVTYTTLI-DGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGD 783

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A    +++  +G    + ++N L++G CK+G + E  K L  M +K   P   +   
Sbjct: 784 LQQALFITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVEN 842

Query: 186 VIQGF 190
           ++ G 
Sbjct: 843 IVIGL 847



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  +     Y   I+G CK  +I  A       I KG+  +   Y++LI+G C   
Sbjct: 688 EMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAG 747

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A++L+++M+ +G+  +   Y+ L            A+ + + +    Y + I  ++
Sbjct: 748 DIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFN 806

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G+ +E  K L  + +K +VP ++T   ++ GL + G + EA  + V++++K
Sbjct: 807 TLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQK 866


>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 376

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI ++G CK       +  ++ A +KG  LD F YS++INGLC   +L +AV + + M+
Sbjct: 97  YGILVHGFCKNGYINKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMI 156

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G       YN LI+          A+ +++ +        +  YS +I+GLC+V R+ 
Sbjct: 157 KSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFG 216

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   + ++ ZKGL P V+TY++L+ GLC    +  A +L  Q+  KG  PD    N +I
Sbjct: 217 EAYDLVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILI 276

Query: 188 QGFLVKNETDRA 199
            G     +T  A
Sbjct: 277 HGLCSVGKTQLA 288



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFV-YSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + A++         C    V YS+LINGLC   R  EA +
Sbjct: 161 KPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+   ++TY+ L+           A+ L   +    ++ ++++++++I GLC
Sbjct: 221 LVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +VT+N L+ G  K   I  A  +  ++   G  PD  
Sbjct: 281 SVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNGLQPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAILFL 362



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  ++  I    +      +     V  ++ ++ GL    +
Sbjct: 15  EIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVASFNIMMRGLFDNGK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E + + + M   G   + +TY  L+H  + K G  + ++ +L+  ER    L+   YS
Sbjct: 75  VDEVISILELMKKSGFIEDSITYGILVH-GFCKNGYINKSLHVLEIAERKGGVLDAFAYS 133

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+  + ++A   L+ + + G  P    YN LINGL       +A +++ +M   
Sbjct: 134 AMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTT 193

Query: 175 GCFPDSTSFNTVIQGF 190
            C P   +++T+I G 
Sbjct: 194 NCSPTLVTYSTLINGL 209



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ Z+    +   Y + + G+C   +++ A++       KG   DV +++ LI+GLC+  
Sbjct: 224 EMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A+ L+  M        LVT+N L+   ++     +A+ +   + R+  + +I  Y+
Sbjct: 284 KTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNGLQPDIISYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R  +A   L     K +VP ++T
Sbjct: 344 ITLKGLCSCNRISDAILFLHDAVTKKIVPTIIT 376


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK R I+ A +        GI  +   +++LI+GLC   R+ +A EL D+M
Sbjct: 478 TYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQM 537

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +++G+    VTYN ++  ++ KQG  S  A +LQT+  + +E+++  Y+ +I+GLC+  R
Sbjct: 538 ISEGLQPNNVTYNSILT-HYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARR 596

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A K L  +  KG+ P    YN +I  L +     +A  L  +M E G  PD+ ++  
Sbjct: 597 TQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKI 656

Query: 186 VIQGF 190
           V +G 
Sbjct: 657 VFRGL 661



 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 98/172 (56%), Gaps = 2/172 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+  +V+ ++ LIN LC       AV LF++M + G T + VTYN LI DN    G+ +
Sbjct: 400 KGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILI-DNLCSSGKLA 458

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ LL+ +E      +   Y+ +IDGLC+  R EEA +  DQ+   G+    +T+N LI
Sbjct: 459 KALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLI 518

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +GLC    I +A +L+ QM  +G  P++ ++N+++  +  +    +A+  L+
Sbjct: 519 DGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQ 570



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +LT +    N + + I IN +CK+ +   A++        G   D   Y+ LI+ LC+  
Sbjct: 396 ELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSG 455

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A++L  +M   G     VTYN +I    +++    A  +   ++      N   ++
Sbjct: 456 KLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFN 515

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDGLC   R ++A + +DQ+  +GL P  VTYN ++   CK+G I +A  +L  M   
Sbjct: 516 TLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTAN 575

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G   D  ++ T+I G      T  A   L+
Sbjct: 576 GFEVDVVTYATLINGLCKARRTQAALKLLR 605



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++ Q  + +   +   I+ +C+ R+  +A+          +  D   +++L+ G     
Sbjct: 186 EMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEG 245

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            ++ A+ L  +M   G +   VT N LI+  + K GR   A+  +Q    D +E +   +
Sbjct: 246 SIEAALRLKARMSEMGCSPTSVTVNVLIN-GYCKLGRVGDALGYIQQEIADGFEPDRVTF 304

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S  ++GLC+ G  + A K L  + ++G  P V TY+ +IN LC  G + EA  ++ QM +
Sbjct: 305 STFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVD 364

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC PD+T+FNT+I     +N+ + A
Sbjct: 365 SGCLPDTTTFNTLIVALCTENQLEEA 390



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 13/199 (6%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + ING CK+  +  A       I  G   D   +S+ +NGLC    +  A+++   M+ +
Sbjct: 271 VLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE 330

Query: 70  GITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           G   ++ TY+ +I+   +N E +    A  ++  +       +   ++ +I  LC   + 
Sbjct: 331 GCEPDVYTYSTVINCLCNNGELE---EAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQL 387

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA     +L+ KGL P V T+NILIN LCK G    A +L  +MK  GC PD  ++N +
Sbjct: 388 EEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNIL 447

Query: 187 IQGFLVKNETDRASSFLKK 205
           I       +  +A   LK+
Sbjct: 448 IDNLCSSGKLAKALDLLKE 466



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 24  KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+ ++SA      +GI  DV  ++++I+ LC   + + AV + ++M +  +  +  T+ 
Sbjct: 176 KIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFT 235

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            L+    E+    +A+ L   +            +++I+G C++GR  +A   + Q    
Sbjct: 236 TLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIAD 295

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P  VT++  +NGLC+ G +  A K+L  M ++GC PD  +++TVI       E + A
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEA 355

Query: 200 SSFLKK 205
              + +
Sbjct: 356 KGIVNQ 361



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +  VY+ L+  L   +++K     + +M +QGI  ++VT+N +I      +   +A
Sbjct: 156 GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTA 215

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +L+ +       +   ++ +++G    G  E A +   ++SE G  P  VT N+LING
Sbjct: 216 VLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLING 275

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            CK G + +A   + Q    G  PD  +F+T + G       D A
Sbjct: 276 YCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHA 320


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +CK   I+ A+        KGI + V+ Y+SLING C    L  A  L   M
Sbjct: 375 TYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM 434

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+T    +Y+PLI          S M L + +       N   ++ +I+G C+  + 
Sbjct: 435 VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKM 494

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +  D++ +  ++P  VT+N++I G C  G I +A +L  QM E G  PD+ ++ ++
Sbjct: 495 DEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554

Query: 187 IQGFLVKNETDRASSFL 203
           I G  + +   +A+ F+
Sbjct: 555 ISGLCLTSGVSKANEFV 571



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  +VF Y++LI+ LC   R  +A  LF +M  +G+    VTY  LIH   ++     A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L   +     ++ +  Y+ +I+G C+ G  + AR  L  + ++GL P   +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G +    +L  +M E+G   ++ +F  +I GF    + D A+    K
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDK 503



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+ +CK    D A +       +G+  +   Y+ LI+ LC    +++A+ LF
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
           DKM  +GI   +  YN LI + + KQG    A  LL  + ++        YS +I GLCR
Sbjct: 397 DKMRDKGIKVTVYPYNSLI-NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G      +   +++E+G+     T+  LING CK   + EA +L  +M +    P+  +
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 183 FNTVIQGF-LVKN 194
           FN +I+G+ LV N
Sbjct: 516 FNVMIEGYCLVGN 528



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G   +   ++ LIN LC    L  A  L  +M+A  +     TYN  + D +  
Sbjct: 677 DQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFL-DYFAT 735

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L +     +  +I  ++++I GLC+ G+ +EA   + +++E G  P  ++Y
Sbjct: 736 EGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISY 795

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + +I+ LCK G I +A +L  +M  KG  PD  ++N  I+   V  E+D+A
Sbjct: 796 STIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKA 846



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 2   DLTEQRFKGNFH----VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
           DL ++  +   H    VY   I   C+ R +D A         +G+      Y+ L+ GL
Sbjct: 184 DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGL 243

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   R++EAVE+ + MV  G+TA+ VTY  L++     +    A+ +   + R  +  + 
Sbjct: 244 CKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              S +ID L +    EEA     +L + G+VP V  YN LI+ LCK     +AD+L  +
Sbjct: 304 ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKE 363

Query: 171 MKEKGCFPDSTSFNTVIQGF 190
           M  +G  P+  ++  +I   
Sbjct: 364 MAGRGLEPNEVTYAILIHAL 383



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNR 55
           + E   K + + Y   I+G+C      K  E  + ++     L+ F  ++L+ G     R
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 598

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             E   L+D+M  +G+  +LV++  +++   ++  +  +  L + ++    + +   Y+ 
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID L +     +A    DQ+   G  P  VT+ +LIN LCK G +  A+ L  +M    
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  ++N  +  F  + + ++A
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKA 742



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N + +   ING CK +++D A       I   +  +   ++ +I G C   
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVG 527

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +++A +L+D+MV  G+  +  TY  LI       G   A   +  LE     LN    +
Sbjct: 528 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 587

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G  R GR+ E     D+++ +G+   +V++ I++    K+    ++  L  +MKE+
Sbjct: 588 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 175 GCFPDSTSFNTVIQGF 190
           G  PD   +  +I   
Sbjct: 648 GVKPDDIFYTCMIDAL 663



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 47/229 (20%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           E RF   +H++             D    +G+ LD+  ++ ++      +  +++  LF 
Sbjct: 596 EGRFTETYHLW-------------DEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFR 642

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  QG+  + + Y  +I    +++    A+     +  D Y  N   ++++I+ LC+ G
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 125 RWEEAR----------------------------------KKLDQLSEKGLVPGVVTYNI 150
               A                                   K L     +G +  +V++NI
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI GLCK G I EA  L+ ++ E G  PD  S++T+I       + ++A
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKA 811



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 35/168 (20%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           M K +++ SA+ +G    +  ++ LI GLC   +++EA++L  K+   G + + ++Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           IH+                                   LC++G   +A +  +++  KGL
Sbjct: 799 IHE-----------------------------------LCKMGDINKAFELWNEMLYKGL 823

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            P VV YNI I      G   +A  +   M   G  P+  ++  ++ G
Sbjct: 824 KPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI ++ +  S ++  L    +   A +LFDKM+  G+  +   Y   I    E + 
Sbjct: 154 SLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRN 213

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L+  +E +  + +   Y++++ GLC+  R +EA +  + +   G+    VTY  
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           L+ G C+   +  A ++   M   G  P   + + +I     K   + A S 
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSL 325


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   YG  ++G CK   ++ A K       +G   +  VY +LI+GLC   +L EA E
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +M   G  A L TY+ LI   ++ + +  A  +L  +  +    N+ +Y+ +IDGLC
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +VG+ +EA K +  + EKG  P VVTY  +I+G    G I    +LL +M  KG  P+  
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  +I         D A + L++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEE 839



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           Q F  +   Y   +N +C   +++ A        + G+  DV+ Y+ +++  C    +++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A + F++M   G T  +VTY  LIH   + +    A  L +T+  +    NI  YS +ID
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 119 GLCRVGRWEEA-------------------RKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
           G C+ G+ E+A                    K+ D  SE+   P VVTY  L++G CK  
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER---PNVVTYGALLDGFCKSH 653

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            + EA KLL  M  +GC P+   ++ +I G     + D A
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 693



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 86/174 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L+    SS    LC+  + ++A  +  +M+ QG   +  TY+ +++        
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L + ++R     ++  Y++++D  C+ G  E+ARK  +++ E G  P VVTY  L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+   K   +  A++L   M  +GC P+  +++ +I G     + ++A    ++
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + D A K       KG   +V  Y+++I+G     +
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI--------------------HDNWEKQGR---- 91
           ++  +EL ++M ++G+    VTY  LI                      +W         
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 92  ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKG 140
                      ++ LL  + +D     + VY L+ID L +  R E A + L++++     
Sbjct: 855 VIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 914

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LV    TYN LI  LC    +  A +L  +M +KG  P+  SF ++I+G    ++   A
Sbjct: 915 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 77  TYNPLIHDNWEKQGRFSAMAL------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           TYN LI   + K  R  + +L      L  L  D + L    YSL     C+VG+W EA 
Sbjct: 237 TYNCLIQ-AFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSL-----CKVGKWREA- 289

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             L  +  +  VP  V Y  LI+GLC+  +  EA   L +M+   C P+  +++T++ G 
Sbjct: 290 --LTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347

Query: 191 LVKNETDRASSFLKKNM 207
           L K +  R    L   M
Sbjct: 348 LNKKQLGRCKRVLNMMM 364



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMV-----AQGITAELVTYNPLIHDNWEKQGRFSAMA 96
            Y+ LI      +RL  A  +  +M        G T     Y+      W +     A+ 
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWRE-----ALT 291

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L++T   + +  +   Y+ +I GLC    +EEA   L+++     +P VVTY+ L+ G  
Sbjct: 292 LVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            K  +    ++L  M  +GC+P    FN+++  +    +   A   LKK
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 397



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y+ LI+GLC  +  +EA++  ++M A      +VTY+ L+     K+       +L
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +  +    + ++++ ++   C  G    A K L ++ + G +PG V YNILI  +C  
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420

Query: 159 GMIMEADKLLVQMKEKG 175
              +  D  L+ + EK 
Sbjct: 421 KDSLNCD--LLDLAEKA 435



 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 43  YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y  +I G   FN+   E++ L D+ + Q  TA  ++   L+ DN  K  R   MAL    
Sbjct: 852 YRKVIEG---FNKEFIESLGLLDE-IGQDDTAPFLSVYRLLIDNLIKAQRLE-MALRLLE 906

Query: 102 ERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           E   +   +      Y+ +I+ LC   + E A +   ++++KG++P + ++  LI GL +
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966

Query: 158 KGMIMEADKLL 168
              I EA  LL
Sbjct: 967 NSKISEALLLL 977


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++ I I G+CK+  +  A         KG   D F YSSLI+G      +  A  L D+M
Sbjct: 648 MWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEM 707

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++  +T  +VTYN LI+   +      A++L   L+      N   Y+ +IDG C+ G  
Sbjct: 708 LSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNT 767

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K   ++ ++G+ P V TY ILI+GLC +G + EA KLL QM E    P+  ++ T+
Sbjct: 768 TEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTL 827

Query: 187 IQGF 190
           IQG+
Sbjct: 828 IQGY 831



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 11  NFHVYGIRINGMCK---IREIDSAIKK-----GICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N   Y + + G CK   + E +  +K+      I +D   Y +LING C   R+++A  +
Sbjct: 233 NVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRV 292

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLC 121
            D+M+  G+   +  YN +I + + K GR   +  LLQ  E     L+   Y+ ++DG C
Sbjct: 293 RDEMIDAGVQVNMFVYNTMI-NGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYC 351

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G   +A +  D +   G     +TYN L+NG C +G I +A KL   M ++G  P+  
Sbjct: 352 RKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEI 411

Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
           S +T++ GF    +T++A +  K+ +
Sbjct: 412 SCSTLLDGFFKAGKTEQALNLWKETL 437



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   ING CK+  +    K       +G+ LD + Y++L++G C    + +A E  
Sbjct: 304 NMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETC 363

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV  G T   +TYN L++    +     A+ L   + +     N    S ++DG  + 
Sbjct: 364 DMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKA 423

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A     +   +GL   VVT N +INGLCK   + EA++L  +MKE  C  DS ++
Sbjct: 424 GKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTY 483

Query: 184 NTVIQGFLVKNETDRAS 200
            T+I G+    +  RA+
Sbjct: 484 RTLIDGYCKLGDLGRAT 500



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL  + F  +   Y   I+G      ID A       +   +  ++  Y+SLI GLC   
Sbjct: 671 DLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSC 730

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  AV LF+K+ ++GI+   +TYN LI  + +      A  L Q + ++  +  +  Y+
Sbjct: 731 NVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYT 790

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC  G  EEA K LDQ+ E  + P  +TY  LI G  + G +    KL  +M   
Sbjct: 791 ILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNEMHIC 850

Query: 175 GCFP 178
           G  P
Sbjct: 851 GLLP 854



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERD 104
           L+N L     +  AV +F +M   G   +  T   ++   + + GR +  A  L+ +E  
Sbjct: 135 LLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTV-AIMAKAYCRDGRVAHAADFLKEMEEM 193

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             ++N+  Y  V+DG CR+G+ E ARK L  L  KGL P VVTY +L+ G CK+G + EA
Sbjct: 194 GLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEA 253

Query: 165 DKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +K++ ++KE +    D  ++  +I G+  +   + A+
Sbjct: 254 EKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDAN 290



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-- 92
           G+ +++  Y ++++G C   + + A +L   +  +G++  +VTY  L+   + K+GR   
Sbjct: 194 GLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLV-KGYCKEGRMEE 252

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +   + +  E +K  ++   Y  +I+G C+ GR E+A +  D++ + G+   +  YN +I
Sbjct: 253 AEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMI 312

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           NG CK G + E +KLL   + +G   D  S+NT++ G+  K    +A
Sbjct: 313 NGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKA 359



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +++ +I GLC   R+ +A  LF+ +  +G   +  TY+ LIH          A  L   +
Sbjct: 648 MWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEM 707

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
              +   NI  Y+ +I GLC+      A    ++L  KG+ P  +TYN LI+G CK G  
Sbjct: 708 LSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNT 767

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EA KL  +M ++G  P   ++  +I G   +   + A   L +
Sbjct: 768 TEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQ 811



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 42/240 (17%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F G    Y   +NG C    ID A+K       +G+  +    S+L++G     + ++A+
Sbjct: 371 FTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQAL 430

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            L+ + +A+G+   +VT N +I+   + +    A  L   ++      +   Y  +IDG 
Sbjct: 431 NLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGY 490

Query: 121 CR---VGRWEEARKKLDQL--------------------------------SEKGLVPGV 145
           C+   +GR  + R +++ L                                S KGL P  
Sbjct: 491 CKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNT 550

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VTY  LI G CK+G + +A  L  +M EKG  P+    + ++  F  + + D A+  L+K
Sbjct: 551 VTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQK 610



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+  +   Y +LI G C    L +A  L+ +MV +G+   L   + L+   + +     
Sbjct: 544 KGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDE 603

Query: 94  AMALLQTL-------ERDKYELNIE-------------------VYSLVIDGLCRVGRWE 127
           A  +LQ L       +     LNI                    ++++VI GLC++GR  
Sbjct: 604 ANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVA 663

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +AR   + L  KG +P   TY+ LI+G    G I  A  L  +M      P+  ++N++I
Sbjct: 664 DARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLI 723

Query: 188 QGFLVKNETDRASSFLKK 205
            G        RA S   K
Sbjct: 724 YGLCKSCNVSRAVSLFNK 741



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +LK+A+ +FD+M   G    L + N L++   +     +A+A+ Q +       +    +
Sbjct: 109 QLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVA 168

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++    CR GR   A   L ++ E GL   +V Y+ +++G C+ G    A KLL  ++ K
Sbjct: 169 IMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVK 228

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++  +++G+  +   + A   +K+
Sbjct: 229 GLSPNVVTYTLLVKGYCKEGRMEEAEKVVKE 259


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 10/214 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  +   G+ + Y   IN  C+   +R      D  +  G+  +   Y +LING C   
Sbjct: 243 EMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIG 302

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           +++ A  L   M  +G+    + +N +I D + + G    A+ +   +E+   EL+I  Y
Sbjct: 303 QIEAAEMLLADMQLRGVGHNQIVFNTMI-DGYCRHGMVEKALEIKAVMEKMGIELDIYTY 361

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +  GLCRV R E+A+K L  ++EKG+ P  V+Y  LI+   K+G ++EA +L   M+ 
Sbjct: 362 NTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEG 421

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           KG  P   ++N +I G+ +KN + R +   KK M
Sbjct: 422 KGSRPSVVTYNVMIDGY-IKNGSIREAERFKKEM 454



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L + + +G  H   V+   I+G C+   ++ A+       K GI LD++ Y++L  GLC 
Sbjct: 311 LADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCR 370

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
            NR+++A +L   M  +G+    V+Y  LI  + ++     A  L + +E      ++  
Sbjct: 371 VNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVT 430

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG  + G   EA +   ++ +KGLVP + TY  L++G C  G +  A +L  +MK
Sbjct: 431 YNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMK 490

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +G  P+  ++  ++ G   +  ++ A
Sbjct: 491 HRGTKPNVVAYTALVSGLAKEGRSEEA 517



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDKMVAQG 70
           ++G CK   +D A        + G+ L+   Y+SL++   T  R  +AV  L  +M  +G
Sbjct: 155 VDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSY-TRQRNDDAVAGLLKEMENRG 213

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           +   + TY  L+ D   + G  S + A+   ++R     ++  YS VI+  CR G    A
Sbjct: 214 VEPTVGTYTILV-DGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRA 272

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +  D+    G+ P   TY  LING CK G I  A+ LL  M+ +G   +   FNT+I G
Sbjct: 273 SEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDG 332

Query: 190 F 190
           +
Sbjct: 333 Y 333



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG    V  Y+ +I+G      ++EA     +M  +G+  ++ TY  L+H +        
Sbjct: 422 KGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDV 481

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L + ++    + N+  Y+ ++ GL + GR EEA +  D +   GL P    Y++L+ 
Sbjct: 482 ALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVG 541

Query: 154 GL 155
            L
Sbjct: 542 SL 543


>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
 gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
          Length = 558

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 4/181 (2%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ID  + +G    V  +S+++  LC   R+ +A+E+FD M A G    + +YN L+     
Sbjct: 201 IDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRALGCEPTIRSYNSLV-GGLC 259

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
             GR   A+ LL  L+      +I  +++V+DG C+VGR EEA          GL P + 
Sbjct: 260 YVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTIF 319

Query: 147 TYNILINGLCKKGMIMEADKLLVQM--KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           TYN L+NG CK+G  ++A  LL++M   +  C PD  SF  V+   L   ET  A    K
Sbjct: 320 TYNALLNGHCKEGNPLKAFALLMEMCGNDAACPPDKISFGIVLTALLRAGETSAAWQTYK 379

Query: 205 K 205
           +
Sbjct: 380 R 380



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E V++ D +        +  YN ++          +A+AL + +       + + ++ 
Sbjct: 127 VEERVKVLDLLPRDDDALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAQSFAT 183

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +  LCR G  +EA+  +D++  +G  P V T++ ++  LCK+G + +A ++   M+  G
Sbjct: 184 AVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRALG 243

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P   S+N+++ G       + A   L K
Sbjct: 244 CEPTIRSYNSLVGGLCYVGRLEEALDLLNK 273



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 49/225 (21%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C +  ++ A+          +  D++ ++ +++G C   R +EA  +F   +
Sbjct: 251 YNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI 310

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALL----------------------------- 98
             G++  + TYN L++ + ++     A ALL                             
Sbjct: 311 GMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEMCGNDAACPPDKISFGIVLTALLRAGE 370

Query: 99  --------QTLERDKYELNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKGLVPGV 145
                   + +ER  +E++      ++ GL R     V    +A++   ++   G  P  
Sbjct: 371 TSAAWQTYKRMERAGFEVDGRALDTLVRGLFRRCATDVSALGDAKEVFAKVVASGHEPVS 430

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            TY ++   L + G +  A  LL  M  KG      ++  V++  
Sbjct: 431 YTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRAL 475



 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL---CT--FNRLKEAVEL 62
           +GI +  + +  E  +A        + G  +D     +L+ GL   C    + L +A E+
Sbjct: 358 FGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLVRGLFRRCATDVSALGDAKEV 417

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLC 121
           F K+VA G      TY  L+     + G   +A+ALL+ + R  Y L    Y+ V+  LC
Sbjct: 418 FAKVVASGHEPVSYTYC-LMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALC 476

Query: 122 RVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLCKKG 159
             GR  +A + L   +  +  VPG   +  L+  L ++G
Sbjct: 477 DRGRALDALQVLVLVMIVRDFVPGRNAFEALLGELSRQG 515


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  +  G+  +   Y  LING C   +++ A  L   M  QG+    + +N +I D + 
Sbjct: 96  LDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMI-DGYC 154

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           ++G    A+ +   +E+   EL+I  Y+ +  GLCRV R +EA+  L  + E G+VP  V
Sbjct: 155 RKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYV 214

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TY  LI+  CK G ++EA +L  +M EKG  P   ++N +I G+  K     A  F K+
Sbjct: 215 TYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKE 273



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG+ ING CKI ++++A         +G+ L+  +++++I+G C    + +A+++ 
Sbjct: 107 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIK 166

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G+  ++ TYN L            A  LL  +       N   Y+ +I   C+ 
Sbjct: 167 AAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKD 226

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   EAR+   +++EKG  P VVTYN++I+G  KKG I EA++   +M++KG  PD  ++
Sbjct: 227 GDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTY 286

Query: 184 NTVIQGFLVKNETDRA 199
            +++ G  V  + D A
Sbjct: 287 ASLVHGHCVNGKVDVA 302



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+  Q    N  ++   I+G C+   +D A+K        G+ LD++ Y++L  GLC  N
Sbjct: 133 DMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVN 192

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL EA  L   M+  G+    VTY  LI  + +      A  L + +       ++  Y+
Sbjct: 193 RLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYN 252

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I G  + G   EA +   ++ +KG VP V TY  L++G C  G +  A KL  +MK++
Sbjct: 253 VMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR 312

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  P+  ++  +I G   +  ++ A
Sbjct: 313 GTEPNVVAYTALISGLAKEGRSEAA 337



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y     G+C++  +D A       I+ G+  +   Y++LI+  C    + EA  LF
Sbjct: 177 DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLF 236

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G T  +VTYN +IH   +K     A    + +E+  +  ++  Y+ ++ G C  
Sbjct: 237 REMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVN 296

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A K  +++ ++G  P VV Y  LI+GL K+G    A +L   M + G  PD + +
Sbjct: 297 GKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLY 356

Query: 184 NTVIQGFLVKNETD 197
           + ++      N  D
Sbjct: 357 SALVGSLHTDNRKD 370



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S +++GLC   R+ +A  L D M   G++   + YN L+     ++       +L+ +E 
Sbjct: 18  SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 77

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +  E      + V DG C         K LD+    G+ P   TY +LING CK G +  
Sbjct: 78  EGIE------ATVGDGTCG-----GPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEA 126

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           A+ LL  M+ +G   +   FNT+I G+  K   D A
Sbjct: 127 AEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA 162


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 110/235 (46%), Gaps = 42/235 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C+  E+D+A++       +G   DV  Y+ LI GLC  ++ +EA    
Sbjct: 250 NLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYL 309

Query: 64  DKMVAQGITAELVTYNPLIH----------------------------------DNWEKQ 89
            K+V +G+  +  TYN LI                                   D    +
Sbjct: 310 GKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHE 369

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G  + A+AL         + N+ +Y+ +I GL   G   EA +   ++SEKGL+P V T+
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTF 429

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NIL+NGLCK G + +AD L+  M  KG FPD  +FN +I G+  + + + A   L
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEIL 484



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 96/173 (55%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  +V  ++ L+NGLC    + +A  L   M+++G   ++ T+N LIH    +    
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ +L  +  +  + ++  Y+ +++GLC+  ++E+  +    + EKG  P + T+NIL+
Sbjct: 479 NALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILL 538

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             LC+   + +A  LL +MK K   PD+ +F T+I GF    + D A +  +K
Sbjct: 539 ESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + + IR+   C+     +A++       +G  ++V  Y +++ G    N   E  ELF
Sbjct: 145 DVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELF 204

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM+A G++  L T+N L+H   +K        LL  + +     N+  Y+  I GLC+ 
Sbjct: 205 GKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQK 264

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A + + +L ++G  P VVTYN LI GLCK     EA+  L ++  +G  PDS ++
Sbjct: 265 GELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTY 324

Query: 184 NTVIQGF 190
           NT+I G+
Sbjct: 325 NTLIAGY 331



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 95/176 (53%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+ L +  ++ L++ LC    +KE  +L DK++ +G+   L TYN  I    +K   
Sbjct: 208 LASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL 267

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A+ ++  L     + ++  Y+ +I GLC+  +++EA   L +L  +GL P   TYN L
Sbjct: 268 DAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTL 327

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           I G CK GM+  A+++LV     G  PD  ++ ++I G   + ET+RA +   + +
Sbjct: 328 IAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEAL 383



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 102/200 (51%), Gaps = 8/200 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++E+        + I +NG+CK+  +  A       I KG   D+F ++ LI+G  T  
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +++ A+E+ D M+  G+  ++ TYN L++   +       M   +T+       N+  ++
Sbjct: 476 KMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFN 535

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++ LCR  + ++A   L+++  K + P  VT+  LI+G CK G +  A  L  +M+E 
Sbjct: 536 ILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEV 595

Query: 175 GCFPDST-SFNTVIQGFLVK 193
                ST ++N +I  F  K
Sbjct: 596 YMVSCSTPTYNIIIHAFTEK 615



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  IK+G+  ++F Y+  I GLC    L  AV +  +++ QG   ++VTYN LI+   +
Sbjct: 239 LDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCK 298

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A   L  L  +  E +   Y+ +I G C+ G  + A + L      G VP   T
Sbjct: 299 NSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFT 358

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           Y  LI+GLC +G    A  L  +   KG  P+   +NT+I+G 
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL 401



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 1/196 (0%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H Y  ++     +  +D  +  G+  DV+ Y+SL+NGLC  ++ ++ +E +  MV +G  
Sbjct: 469 HGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             L T+N L+           A+ LL+ ++      +   +  +IDG C+ G  + A   
Sbjct: 529 PNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588

Query: 133 LDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             ++ E  +V     TYNI+I+   +K  +  A+KL  +M ++   PD  ++  ++ GF 
Sbjct: 589 FRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 192 VKNETDRASSFLKKNM 207
                D    FL + M
Sbjct: 649 KTGNVDLGYKFLLEMM 664



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI  DV+ ++  +   C  +R   A+ L + M +QG    +V Y  ++   +E+  +  
Sbjct: 140 RGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDE 199

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              L   +      L +  ++ ++  LC+ G  +E  K LD++ ++G++P + TYN  I 
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQ 259

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC+KG +  A +++ ++ ++G  PD  ++N +I G    ++   A  +L K
Sbjct: 260 GLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGK 311



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 8/188 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+    N   + I +  +C+  ++D A+        K +  D   + +LI+G C    
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581

Query: 56  LKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           L  A  LF KM     ++    TYN +IH   EK     A  L Q +       +   Y 
Sbjct: 582 LDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYR 641

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L++DG C+ G  +   K L ++ E G +P + T   +IN LC +  + EA  ++ +M +K
Sbjct: 642 LMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701

Query: 175 GCFPDSTS 182
           G  P++ +
Sbjct: 702 GLVPEAVN 709



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 85  NWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           N+ ++G+   A+ + + ++    E  +  Y+ ++  L   G +++A K   ++ ++G+ P
Sbjct: 85  NYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITP 144

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V ++ I +   C+      A +LL  M  +GC  +  ++ TV+ GF  +N  D      
Sbjct: 145 DVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELF 204

Query: 204 KK 205
            K
Sbjct: 205 GK 206



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIE-VYS 114
           +A+E+F+ M  + G    L TY  +I +     G+F AM  +L  + ++     +E VY 
Sbjct: 22  KALEMFNSMRKEDGFKHTLSTYRSII-EKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYV 80

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +    R G+ +EA    +++      P V +YN +++ L   G   +A K+ ++M+++
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR 140

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  PD  SF   ++ F     T R  + L+
Sbjct: 141 GITPDVYSFTIRMKSFC---RTSRPHAALR 167


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q     F+ Y   I+G+    +I++A        +KGI LD   Y+ LING C   
Sbjct: 352 EMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHG 411

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             K+A  L D+M+  GI     TY  LI+    K     A  L + +     + ++ + +
Sbjct: 412 DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMN 471

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++DG C +G  + A   L ++    + P  VTYN L+ GLC +G   EA +L+ +MK +
Sbjct: 472 TLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           G  PD  S+NT+I G+  K +T  A
Sbjct: 532 GIKPDHISYNTLISGYSKKGDTKHA 556



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING C+  +        D  +  GI    F Y+SLI  LC  N+ +EA ELF+K+
Sbjct: 399 TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKV 458

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G+  +LV  N L+  +        A +LL+ ++      +   Y+ ++ GLC  G++
Sbjct: 459 VGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKF 518

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR+ + ++  +G+ P  ++YN LI+G  KKG    A  +  +M   G  P   ++N +
Sbjct: 519 EEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNAL 578

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++G     E + A   L++
Sbjct: 579 LKGLSKNQEGELAEELLRE 597



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC---KIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLK 57
           ++  + F+ +   Y   ++ MC   +  E+   +K+ G+  D   Y+ LI G      L+
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLE 344

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A    D+MV QG+     TYN LIH  + +    +A  L++ +      L+   Y+++I
Sbjct: 345 MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILI 404

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +G C+ G  ++A    D++   G+ P   TY  LI  LC+K    EAD+L  ++  KG  
Sbjct: 405 NGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMK 464

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD    NT++ G       DRA S LK+
Sbjct: 465 PDLVMMNTLMDGHCAIGNMDRAFSLLKE 492



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 20/210 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-----------GICLDVFVYSSLINGL 50
           D+     K N + + I IN +CK    +  +KK           GI   +  Y++L+ G 
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCK----EGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGF 270

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELN 109
               R++ A  +  +M ++G   ++ TYNP++  +W   +GR  A  +L+ ++      +
Sbjct: 271 SLRGRIEGARLIISEMKSKGFQPDMQTYNPIL--SWMCNEGR--ASEVLREMKEIGLVPD 326

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y+++I G    G  E A    D++ ++G+VP   TYN LI+GL  +  I  A+ L+ 
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +++EKG   DS ++N +I G+    +  +A
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHGDAKKA 416



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 23  CKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C++R +D AI+       KG        + ++  L   NR++ A   +  M    I + +
Sbjct: 166 CQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225

Query: 76  VTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            T+N +I +   K+G+   A   L  +E    +  I  Y+ ++ G    GR E AR  + 
Sbjct: 226 YTFNIMI-NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIIS 284

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           ++  KG  P + TYN +++ +C +G    A ++L +MKE G  PDS S+N +I+G
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNILIRG 336



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
             ++  L+   C    + EA+E F  M  +G   +  T N ++          +A     
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + R + + N+  ++++I+ LC+ G+ ++A+  L  +   G+ P +VTYN L+ G   +G
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRG 274

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            I  A  ++ +MK KG  PD  ++N ++      NE  RAS  L++
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNPILSWMC--NE-GRASEVLRE 317


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 35/178 (19%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H Y  R N     R +D+   KGI  D + Y SLI+G+C   RL+EA  LFDKMV  G+ 
Sbjct: 216 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 275

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
              VTYN LI                                   DG C  G  E A   
Sbjct: 276 PNAVTYNTLI-----------------------------------DGYCNKGDLERAFSY 300

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            D++ +KG++P V TYN+L++ L  +G + EAD ++ +M++KG  PD+ ++N +I G+
Sbjct: 301 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 358



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING  +      A       + KGI      Y+SLI  L   NR+KEA +LF+K+
Sbjct: 350 TYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 409

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + QG++ +++ +N +I  +        A  LL+ ++R     +   ++ ++ G CR G+ 
Sbjct: 410 LDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 469

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR  LD++  +G+ P  ++YN LI+G  ++G I +A  +  +M   G  P   ++N +
Sbjct: 470 EEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNAL 529

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+      E D A   LK+
Sbjct: 530 IKCLCKNQEGDLAEELLKE 548



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +LK+A E    M   G    +V+YN +IH    +     A  +L  +     E +   Y 
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYG 247

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C+ GR EEA    D++ E GLVP  VTYN LI+G C KG +  A     +M +K
Sbjct: 248 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 307

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P  +++N ++    ++     A   +K+
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKE 338



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   I+G C    ++ A        +K +  D   +++L+ G C   +++EA  L D+M
Sbjct: 420 MFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI  + ++YN LI     +     A  +   +    +   +  Y+ +I  LC+    
Sbjct: 480 KXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 539

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL 155
           + A + L ++  KG+ P   TY  LI G+
Sbjct: 540 DLAEELLKEMVNKGISPDDSTYLSLIEGM 568



 Score = 36.2 bits (82), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D    +GI  D   Y++LI+G      +K+A  + D+M++ G    L+TYN LI    +
Sbjct: 476 LDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCK 535

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            Q    A  LL+ +       +   Y  +I+G+  V
Sbjct: 536 NQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 571


>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 34/232 (14%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC---- 51
           +T +    + + + I ++  CK   +  A       +K GI   V  Y++L+NG C    
Sbjct: 111 MTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMNGYCLVKE 170

Query: 52  ---------TFNR------LKEAVELFDKMVAQGITAELVTYNPLI---HDNWEKQGRFS 93
                    T N+      + EA+ L+++M  +    ++VTY+ L+   HD  +     +
Sbjct: 171 MNMAKDIFNTMNQSGVVKMIDEAINLYEEMHCRKNIPDVVTYSSLVDIMHDRGQPPDIIT 230

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
             ++L  +  D Y      Y++ I GLC+ G+ ++ARK  + L  KG    V TY ++I 
Sbjct: 231 YNSILDGIRPDMY-----TYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQ 285

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G C KG+  EA  LL +M++ GC PD+  +  VI     K+E D A   L++
Sbjct: 286 GFCDKGLFKEALALLSKMEDNGCIPDAKIYEIVILSLFEKDENDMAEKLLRE 337



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 32/209 (15%)

Query: 11  NFHVYGIRI------NGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           N  +Y IRI      +G CK+ +  +A++       K +  +V +YS++I+G+C    + 
Sbjct: 8   NVPIYEIRIQRVRWNDGSCKVGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVN 67

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A +L+ +MVA+ I+ +++TY+ LI            + L   +  +    ++  +++ +
Sbjct: 68  DAFDLYSEMVAKRISPDVITYSALISGFCIVGKLNDTIGLFNKMTAENINPDVYTFNISV 127

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC----------------KKG-- 159
           D  C+ GR +EA+  L  + + G+ P VVTYN L+NG C                + G  
Sbjct: 128 DAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSGVV 187

Query: 160 -MIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            MI EA  L  +M  +   PD  ++++++
Sbjct: 188 KMIDEAINLYEEMHCRKNIPDVVTYSSLV 216



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ LL+ ++    + N+ +YS +IDG+C+     +A     ++  K + P V+TY+ LI
Sbjct: 33  AALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVITYSALI 92

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G C  G + +   L  +M  +   PD  +FN  +  F  +     A   L   M
Sbjct: 93  SGFCIVGKLNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMM 147



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 61/113 (53%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           ++I  GI  D++ Y+  I GLC   +LK+A ++F+ ++ +G   ++ TY  +I    +K 
Sbjct: 232 NSILDGIRPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKG 291

Query: 90  GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
               A+ALL  +E +    + ++Y +VI  L      + A K L ++  +GL+
Sbjct: 292 LFKEALALLSKMEDNGCIPDAKIYEIVILSLFEKDENDMAEKLLREMIARGLL 344



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
            + + + Y I I G+C+  ++  A K       KG  LDV+ Y+ +I G C     KEA+
Sbjct: 238 IRPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEAL 297

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            L  KM   G   +   Y  +I   +EK     A  LL+ +
Sbjct: 298 ALLSKMEDNGCIPDAKIYEIVILSLFEKDENDMAEKLLREM 338


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   I+G CK      A        K+G   ++F Y+++I+GLC   R
Sbjct: 395 MKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGR 454

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +L  + +  G+ A+ VTY  LI +   +     A+A+   + +   + ++  Y++
Sbjct: 455 FPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNV 514

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   CR  + EE+ K  ++    GL+P   TY  +I G C+ G I  A K   +M++ G
Sbjct: 515 LIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYG 574

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C PDS ++  +I G   +++ D A
Sbjct: 575 CKPDSITYGALISGLCNESKLDEA 598



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 8/195 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV-AQG 70
           ING+CKI  I  A       ++KG   +V+ +++LI+GLC     ++A  LF K+V +  
Sbjct: 305 INGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDN 364

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               + TY  +I+   +++    A  LL  ++      N   Y+ +IDG C+ G +  A 
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAY 424

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + +D + ++G  P + TYN +I+GLCKKG   EA KLL +  + G   D  ++  +I  F
Sbjct: 425 ELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEF 484

Query: 191 LVKNETDRASSFLKK 205
             + +  +A +   +
Sbjct: 485 CRQTDNKQALAIFSR 499



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  ++  +SSLINGLC    +K+A E+ ++MV +G    + T+  LI    +K   
Sbjct: 290 VQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWT 349

Query: 92  FSAMALLQTLER-DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             A  L   L R D Y+ N+  Y+ +I+G C+  +   A   L ++ E+GLVP   TY  
Sbjct: 350 EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTC 409

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LI+G CK G    A +L+  M ++G  P+  ++N +I G   K     A   L++ +
Sbjct: 410 LIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGL 466



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 10/198 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++  + +K N + +   I+G+CK    + A +  + L        +V+ Y+ +ING C  
Sbjct: 323 EMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKE 382

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +L  A  L  +M  QG+     TY  LI D   K G F  A  L+  + ++ +  NI  
Sbjct: 383 EKLNRAEMLLIRMKEQGLVPNTNTYTCLI-DGHCKAGNFGRAYELMDLMGKEGFTPNIFT 441

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +IDGLC+ GR+ EA K L +  + GL    VTY ILI+  C++    +A  +  +M 
Sbjct: 442 YNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMF 501

Query: 173 EKGCFPDSTSFNTVIQGF 190
           + G  PD  ++N +I  F
Sbjct: 502 KVGLQPDMHTYNVLIATF 519



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +K N + Y   ING CK  +++ A        ++G+  +   Y+ LI+G C       A 
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAY 424

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL D M  +G T  + TYN +I D   K+GRF  A  LL+   +     +   Y+++I  
Sbjct: 425 ELMDLMGKEGFTPNIFTYNAII-DGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISE 483

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            CR    ++A     ++ + GL P + TYN+LI   C++  + E++KL  +    G  P 
Sbjct: 484 FCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPT 543

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             ++ ++I G+        A  F  K
Sbjct: 544 KETYTSMICGYCRDGHISSAIKFFHK 569



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%)

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           L   + + VID    +G  + A K  D++ ++ +VP   +Y +++ G C+ G I + D+ 
Sbjct: 191 LKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRW 250

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L  M E+G   D+ +   +I  F  K   +RA  + KK
Sbjct: 251 LKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKK 288



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+   I SAIK        G   D   Y +LI+GLC  ++L EA +L++ M
Sbjct: 546 TYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETM 605

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  G++   VT   L ++  ++    +AM +L+ LE+   +L I   + +I  LC
Sbjct: 606 IDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEK---KLWIRTVNTLIRKLC 657



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 14/216 (6%)

Query: 1   FDLTEQRFKGNFHV----YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLING 49
           + L  +  K   H     Y I I+  C+  +   A+       K G+  D+  Y+ LI  
Sbjct: 459 YKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIAT 518

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
            C   +++E+ +LF++ V  G+     TY  +I          SA+     +     + +
Sbjct: 519 FCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPD 578

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y  +I GLC   + +EA +  + + + GL P  VT   L    CK+G    A  +L 
Sbjct: 579 SITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILE 638

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++++K       + NT+I+    + +   A+ F  K
Sbjct: 639 RLEKKLWI---RTVNTLIRKLCSEKKVGVAALFFHK 671



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 35/122 (28%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQL-------------------SEKGLV----------- 142
           Y L++ G CR+GR  +  + L  +                   SEKG V           
Sbjct: 231 YKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWV 290

Query: 143 -----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                P ++ ++ LINGLCK G I +A ++L +M  KG  P+  +   +I G   K  T+
Sbjct: 291 QMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTE 350

Query: 198 RA 199
           +A
Sbjct: 351 KA 352



 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           L  D  +   EV   ++     +G+ +EA   + ++   GLV      N +I+     G 
Sbjct: 149 LNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGF 208

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  A+K+  +M ++   PDSTS+  ++ G+
Sbjct: 209 VDYAEKVFDEMLDRAVVPDSTSYKLMVVGY 238


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  FK +   Y I I G C+ + +  A +        GI  DV  Y++L++G C    
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
                EL  KM+  G    ++T+  L+H  + K G+   A+ +L++++      N  +Y+
Sbjct: 439 FAAVDELLGKMIDDGCQPSVITFGTLVH-GYCKVGKIDEALRILRSMDESGIHPNNVIYN 497

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID LC+ G  + A +  D++ EK +   V T+N L+ GL  K M  +A +L+ QM+E+
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE 557

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            CFPD  + + +++   V  ETDR   F+++
Sbjct: 558 RCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R+   C +    S  + G  LD   Y+ LI G C   RL EA EL  +M   GI  ++ T
Sbjct: 368 RLEDACSM--ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCT 425

Query: 78  YNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           YN L+  +  K G F+A+  LL  +  D  + ++  +  ++ G C+VG+ +EA + L  +
Sbjct: 426 YNTLLSGSC-KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSM 484

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            E G+ P  V YN LI+ LCK+G +  A +L  +MKEK    + T+FN +++G   KN  
Sbjct: 485 DESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMP 544

Query: 197 DRA 199
           ++A
Sbjct: 545 EKA 547



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           +   YS+L+  L   N +  A+ELF + +++G + + + Y  +I     + GR   A ++
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMI-SGLTQAGRLEDACSM 375

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +++   ++L+ + Y+++I G CR  R  EA + L ++ E G+ P V TYN L++G CK
Sbjct: 376 ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCK 435

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G     D+LL +M + GC P   +F T++ G+    + D A   L+ 
Sbjct: 436 AGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS 483



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           KGN   Y   +  +     +  A++       +G   D  +Y ++I+GL    RL++A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +   M   G   +   YN LI     K+    A  LLQ ++      ++  Y+ ++ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G +    + L ++ + G  P V+T+  L++G CK G I EA ++L  M E G  P++ 
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 182 SFNTVIQGFLVKNETDRA 199
            +NT+I     + + D A
Sbjct: 495 IYNTLIDFLCKRGDVDLA 512



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 52/242 (21%)

Query: 14  VYGIRINGMCKIREIDSAIKK---------GICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            YGI +NG+CK   +  A++           I  DV   +++++GLC   R++EA+   +
Sbjct: 174 TYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVE 233

Query: 65  KMVA--QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
           + ++   G     VTYN LI D + + G  S A  L++ +E +    NI   + ++ GLC
Sbjct: 234 QRMSSVHGCPPNTVTYNCLI-DAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLC 292

Query: 122 RVGR--------------WEEARKKL------------------------DQLSEKGLVP 143
           R GR              W E +                           +++SE G  P
Sbjct: 293 RAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSE-GHSP 351

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             + Y  +I+GL + G + +A  +   MKE G   D+ ++N +I GF  K     A   L
Sbjct: 352 DAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELL 411

Query: 204 KK 205
           ++
Sbjct: 412 QE 413



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFS-AM 95
           DV  Y  L+NGLC   R+ +A+ + D M  Q   I  ++VT N ++ D   K GR   A+
Sbjct: 171 DVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVV-DGLCKSGRVQEAL 229

Query: 96  ALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A ++      +    N   Y+ +ID  CRVG    A + ++++  +G+   +VT N ++ 
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVG 289

Query: 154 GLCKKGMIMEA-----DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           GLC+ G    A     +K  V  + KG   ++ +++T++   L  N    A     + M
Sbjct: 290 GLCRAGRTGAALEFFREKRTVWPEGKG---NAVTYSTLVGALLHTNNVGMAMELFHEKM 345



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCFPDSTSFNTVIQGFLVKNETDRAS 200
           P VVTY IL+NGLCK G + +A ++L  M  +     PD  + NTV+ G         A 
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229

Query: 201 SFLKKNM 207
           +F+++ M
Sbjct: 230 AFVEQRM 236


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKI---REIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   ING+CK+    E+   +++    G+  D + Y++LI+G C    +++A E+ 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             MV  G+ A  +TYN L+           A+ L   + +     N    S ++DGL + 
Sbjct: 418 RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKA 477

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A     +   +GL   V+T+N +INGLCK G + EA++LL +MKE  C PDS ++
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTY 537

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
            T+  G+    +   A+  + K
Sbjct: 538 RTLFDGYCKLGQLGTATHLMNK 559



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHD 84
           R ++S  +KG+  +V  Y+ L+ G C   R++EA  +  +M   G I  + V Y  +I +
Sbjct: 274 RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI-N 332

Query: 85  NWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            + ++GR      ++   RD    +N+ VY+ +I+GLC++GR EE +K L ++ + G+ P
Sbjct: 333 GYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRP 392

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +YN LI+G C++G + +A ++   M   G    + ++NT+++GF   +  D A
Sbjct: 393 DKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G+  +V  ++++INGLC   R+ EA EL D+M       + +TY  L  D + K G+
Sbjct: 491 LARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLF-DGYCKLGQ 549

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             +A  L+  +E   +  ++E+++  I G     +W +      ++S +GL P +VTY  
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI G CK+G + EA  L  +M   G  P+    + ++  F  + + D A+  L+K
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQK 664



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 10  GNFH----VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           GN H    ++ + I G+CK   I       +S   K    D F YSSLI+G      + E
Sbjct: 694 GNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDE 753

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A  L D M++ G+T  ++TYN LI+    K G+ S A+ L   L+      N   Y+ +I
Sbjct: 754 AFSLRDVMLSAGLTPNIITYNSLIY-GLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLI 812

Query: 118 DGLCRVGR----------------WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           D  C+ G+                 EEA K LDQ+ E  + P  +TY  LI+G  K G +
Sbjct: 813 DEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 872

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            E  KL  +M  +G  P +   N      +V N  +R    +K
Sbjct: 873 EEISKLYDEMHIRGLLPTNWIGNWKRSDPVVVNNWNRKDGHMK 915



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH----DNWEKQG 90
           G+  D F  + +    C   R+ +AVE  ++M   G+   LV Y+ ++       W +  
Sbjct: 213 GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDA 272

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYN 149
           R     +L++L+R     N+  Y+L++ G C+ GR EEA + + ++ E G +V   V Y 
Sbjct: 273 R----RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++ING C++G + +A ++  +M++ G   +   +NT+I G 
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGL 369



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 10/214 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK---IREIDSAIKK-----GICLDVFVYSSLINGLCTFN 54
           L  +    N   Y + + G CK   + E +  +K+      I +D   Y  +ING C   
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
           R+ +A  + ++M   GI   L  YN +I +   K GR   +  +LQ +E      +   Y
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMI-NGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDG CR G   +A +    +   GL    +TYN L+ G C    I +A +L   M +
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK 457

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +G  P+  S +T++ G     +T++A +  K+ +
Sbjct: 458 RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL 491



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD 104
           L+N L        A  ++ +M   G+  +  T   ++   + + GR + A+  ++ +E  
Sbjct: 189 LLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTV-AIMAKAYCRDGRVAQAVEFVEEMEGM 247

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
             E+N+  Y  V+D  C +G  E+AR+ L+ L  KGL P VVTY +L+ G CK G + EA
Sbjct: 248 GLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEA 307

Query: 165 DKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRAS 200
           ++++ +MKE G    D  ++  +I G+  +   D A+
Sbjct: 308 ERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 33/231 (14%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +++ +    N   YG  I G CK   +  A       +  G+  +VF+ S+L++      
Sbjct: 594 EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEG 653

Query: 55  RLKEAVELFDKMV----AQGITAELVTYNPLIH--DN------------WE-------KQ 89
           ++ EA  +  K+V      G +   +  + + H  D             W        K 
Sbjct: 654 KVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKS 713

Query: 90  GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           GR + A +L ++L   ++  +   YS +I G    G  +EA    D +   GL P ++TY
Sbjct: 714 GRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITY 773

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N LI GLCK G +  A  L  +++ KG  P+  ++NT+I  +  + +T  A
Sbjct: 774 NSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  FK +   Y I I G C+ + +  A +        GI  DV  Y++L++G C    
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
                EL  KM+  G    ++T+  L+H  + K G+   A+ +L++++      N  +Y+
Sbjct: 439 FAAVDELLGKMIDDGCQPSVITFGTLVH-GYCKVGKIDEALRILRSMDESGIHPNNVIYN 497

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID LC+ G  + A +  D++ EK +   V T+N L+ GL  K M  +A +L+ QM+E+
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE 557

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            CFPD  + + +++   V  ETDR   F+++
Sbjct: 558 RCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R+   C +    S  + G  LD   Y+ LI G C   RL EA EL  +M   GI  ++ T
Sbjct: 368 RLEDACSM--ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCT 425

Query: 78  YNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           YN L+  +  K G F+A+  LL  +  D  + ++  +  ++ G C+VG+ +EA + L  +
Sbjct: 426 YNTLLSGSC-KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSM 484

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            E G+ P  V YN LI+ LCK+G +  A +L  +MKEK    + T+FN +++G   KN  
Sbjct: 485 DESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMP 544

Query: 197 DRA 199
           ++A
Sbjct: 545 EKA 547



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           +   YS+L+  L   N +  A+ELF + +++G + + + Y  +I     + GR   A ++
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMI-SGLTQAGRLEDACSM 375

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +++   ++L+ + Y+++I G CR  R  EA + L ++ E G+ P V TYN L++G CK
Sbjct: 376 ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCK 435

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G     D+LL +M + GC P   +F T++ G+    + D A   L+ 
Sbjct: 436 AGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS 483



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           KGN   Y   +  +     +  A++       +G   D  +Y ++I+GL    RL++A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +   M   G   +   YN LI     K+    A  LLQ ++      ++  Y+ ++ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G +    + L ++ + G  P V+T+  L++G CK G I EA ++L  M E G  P++ 
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 182 SFNTVIQGFLVKNETDRA 199
            +NT+I     + + D A
Sbjct: 495 IYNTLIDFLCKRGDVDLA 512



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 52/242 (21%)

Query: 14  VYGIRINGMCKIREIDSAIKK---------GICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            YGI +NG+CK   +  A++           I  DV   +++++GLC   R++EA+   +
Sbjct: 174 TYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVE 233

Query: 65  KMVA--QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLC 121
           + ++   G     VTYN LI D + + G  S A  L++ +E +    NI   + ++ GLC
Sbjct: 234 QRMSSVHGCPPNTVTYNCLI-DAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLC 292

Query: 122 RVGR--------------WEEARKKL------------------------DQLSEKGLVP 143
           R GR              W E +                           +++SE G  P
Sbjct: 293 RAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSE-GHSP 351

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             + Y  +I+GL + G + +A  +   MKE G   D+ ++N +I GF  K     A   L
Sbjct: 352 DAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELL 411

Query: 204 KK 205
           ++
Sbjct: 412 QE 413



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFS-AM 95
           DV  Y  L+NGLC   R+ +A+ + D M  Q   I  ++VT N ++ D   K GR   A+
Sbjct: 171 DVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVV-DGLCKSGRVQEAL 229

Query: 96  ALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A ++      +    N   Y+ +ID  CRVG    A + ++++  +G+   +VT N ++ 
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVG 289

Query: 154 GLCKKGMIMEA-----DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           GLC+ G    A     +K  V  + KG   ++ +++T++   L  N    A     + M
Sbjct: 290 GLCRAGRTGAALEFFREKRTVWPEGKG---NAVTYSTLVGALLHTNNVGMAMELFHEKM 345



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCFPDSTSFNTVIQGFLVKNETDRAS 200
           P VVTY IL+NGLCK G + +A ++L  M  +     PD  + NTV+ G         A 
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229

Query: 201 SFLKKNM 207
           +F+++ M
Sbjct: 230 AFVEQRM 236


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E + +G F     + + I+ +CK  ++  A K       KG   +   Y+SL++GLC 
Sbjct: 233 LDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL 292

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L +A+ L ++MVA       +T+  L+ D + K GR    + +L +LE   Y  N  
Sbjct: 293 KGKLDKAMSLLNRMVANKCVPNDITFGTLV-DGFVKHGRALDGVRVLVSLEEKGYRGNEF 351

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS +I GL + G+ E   +   ++ EKG  P  + Y+ LI+GLC++G   EA + L++M
Sbjct: 352 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K KG  P+S ++++++ G+    +  +A
Sbjct: 412 KNKGHTPNSFTYSSLMWGYFEAGDIHKA 439



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 42/184 (22%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + I  +C++  +D A++       +    D + YS+L++GLC   R+ EAV L D+M 
Sbjct: 178 FNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQ 237

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G     V +N                                   ++I  LC+ G   
Sbjct: 238 VEGTFPNPVAFN-----------------------------------VLISALCKKGDLS 262

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K +D +  KG VP  VTYN L++GLC KG + +A  LL +M    C P+  +F T++
Sbjct: 263 RASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLV 322

Query: 188 QGFL 191
            GF+
Sbjct: 323 DGFV 326



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   ++G+C    ID A+        +G   +   ++ LI+ LC    L  A +L D 
Sbjct: 211 YTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDN 270

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G     VTYN L+H    K     AM+LL  +  +K   N   +  ++DG  + GR
Sbjct: 271 MFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGR 330

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +  + L  L EKG      +Y+ LI+GL K+G      +L  +M EKGC P++  ++ 
Sbjct: 331 ALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSA 390

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G   + + D A  +L
Sbjct: 391 LIDGLCREGKPDEAKEYL 408



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E+ ++GN   Y   I+G+ K       ++     ++KG   +  VYS+LI+GLC   +
Sbjct: 341 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 400

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E   +M  +G T    TY+ L+   +E      A+ + + +  +    +   YS+
Sbjct: 401 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 460

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +I+GLC+ G+ +EA     Q+  +G+   VV Y+ +I+G C   ++ +  KL  QM    
Sbjct: 461 LINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHN 520

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N ++  F  KN   RA   L
Sbjct: 521 PKLQPDVVTYNILLNAFCTKNSVSRAIDIL 550



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 35/178 (19%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           IDS     I  +   ++ +I  LC    + +AVE+F  M  +   A+  TY+ L+H    
Sbjct: 163 IDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMH---- 218

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                                          GLC  GR +EA   LD++  +G  P  V 
Sbjct: 219 -------------------------------GLCNEGRIDEAVSLLDEMQVEGTFPNPVA 247

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +N+LI+ LCKKG +  A KL+  M  KGC P+  ++N+++ G  +K + D+A S L +
Sbjct: 248 FNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNR 305



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  K N  VY   I+G+C+  + D A +       KG   + F YSSL+ G     
Sbjct: 375 EMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAG 434

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            + +A+ ++ +M         V Y+ LI +   K G+   A+ + + +     +L++  Y
Sbjct: 435 DIHKAILVWKEMTDNDCNHHEVCYSILI-NGLCKNGKLKEALIVWKQMLSRGIKLDVVAY 493

Query: 114 SLVIDGLCRVGRWEEARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           S +I G C     E+  K  +Q+      L P VVTYNIL+N  C K  +  A  +L  M
Sbjct: 494 SSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTM 553

Query: 172 KEKGCFPD 179
            ++GC PD
Sbjct: 554 LDQGCDPD 561



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 30/174 (17%)

Query: 14  VYGIRINGMCKIREIDSAIK---KGIC------LDVFVYSSLINGLCTFNRLKEAVELFD 64
            Y   I+G C  + ++  +K   + +C       DV  Y+ L+N  CT N +  A+++ +
Sbjct: 492 AYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILN 551

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE--RDKYELNIEVYSLVIDGLCR 122
            M+ QG   + +T +                  L+TL    D  +   E    ++  L +
Sbjct: 552 TMLDQGCDPDFITCD----------------IFLKTLRDNMDPPQDGREFLDELVVRLIK 595

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
             R   A   ++ + +K L+P   T+ + +  LCK    M+  K + + + + C
Sbjct: 596 RQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKP---MKVRKTISECQSRMC 646


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 9/204 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   + G+C     + A        ++   LD   ++ L++  C    +   +
Sbjct: 289 LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVI 348

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL ++M+  G   +++TY  +I + + K+G    A+ LL+ +     + N   Y++V+ G
Sbjct: 349 ELLEQMLEHGCIPDVITYTTVI-NGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKG 407

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LCR  RW +A++ +  + ++G +P  VT+N LIN +CKKG+  +A +LL QM   GC PD
Sbjct: 408 LCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPD 467

Query: 180 STSFNTVIQGFLVKNETDRASSFL 203
             S++TVI G     +T+ A   L
Sbjct: 468 LISYSTVIDGLGKAGKTEEALELL 491



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK--IREIDSAI-----KKGICLDVFVYSSLINGLCTFNR 55
           + E     +  +Y   I+G+CK    E+ + I       G+  +V  Y++++ GLC+  R
Sbjct: 249 MPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAER 308

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            +EA +L  +M  +    + VT+N L+ D + + G     + LL+ +       ++  Y+
Sbjct: 309 WEEAEDLLAEMFQEDCPLDDVTFNILV-DFFCQNGLVDRVIELLEQMLEHGCIPDVITYT 367

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI+G C+ G  +EA   L  +S  G  P  ++Y I++ GLC+    ++A +L+  M ++
Sbjct: 368 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 427

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P+  +FNT+I     K   ++A   LK+
Sbjct: 428 GCLPNPVTFNTLINFMCKKGLAEQAIELLKQ 458



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMV----------AQGITAELVTYNPLIHDNWEK 88
           D+  Y++++ GLC   R  +  EL  +MV            G T +L  Y  +I D   K
Sbjct: 212 DIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATII-DGICK 270

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G    A  +L  +     + N+  Y+ V+ GLC   RWEEA   L ++ ++      VT
Sbjct: 271 DGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVT 330

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +NIL++  C+ G++    +LL QM E GC PD  ++ TVI GF  +   D A   LK
Sbjct: 331 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLK 387



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 22  MCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
           M ++ E  S + +  C  D+ +Y+++I+G+C     + A ++  +M + G+   +V YN 
Sbjct: 239 MVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNT 298

Query: 81  LIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           ++      + WE+     A  LL  + ++   L+   +++++D  C+ G  +   + L+Q
Sbjct: 299 VLKGLCSAERWEE-----AEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 353

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + E G +P V+TY  +ING CK+G++ EA  LL  M   GC P++ S+  V++G 
Sbjct: 354 MLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 408



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK   +D A+         G   +   Y+ ++ GLC   R  +A EL   M+
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 425

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG     VT+N LI+   +K     A+ LL+ +  +    ++  YS VIDGL + G+ E
Sbjct: 426 QQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + L+ +  KG+ P  + Y+ + + L ++G   +  ++   +++     D+  +N VI
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 188 QGFLVKNETDRASSF 202
                + ETDRA  F
Sbjct: 546 SSLCKRWETDRAIDF 560



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH- 83
           +R +     KG  LD    + +++ +C    + E VEL  K+ + G   ++V+YN ++  
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKG 222

Query: 84  ----DNWEKQGRFSAMAL-----LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
                 W+         +     L  +       ++ +Y+ +IDG+C+ G  E A   L 
Sbjct: 223 LCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILS 282

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++   GL P VV YN ++ GLC      EA+ LL +M ++ C  D  +FN ++  F    
Sbjct: 283 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 342

Query: 195 ETDRASSFLKK 205
             DR    L++
Sbjct: 343 LVDRVIELLEQ 353



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y I + G+C+          I   I++G   +   +++LIN +C     ++A+E
Sbjct: 395 KPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIE 454

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L  +M+  G + +L++Y+ +I D   K G+   A+ LL  +       N  +YS +   L
Sbjct: 455 LLKQMLVNGCSPDLISYSTVI-DGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASAL 513

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R GR ++  +  D + +  +      YN +I+ LCK+     A      M   GC P+ 
Sbjct: 514 SREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 573

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           +++  +I+G   +     A   L +
Sbjct: 574 STYTILIRGLASEGLVREAQDLLSE 598



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   +   IN MCK    + AI+        G   D+  YS++I+GL    +
Sbjct: 424 MIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 483

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
            +EA+EL + M+ +GIT   + Y+ +      ++GR   +  +  +++      +  +Y+
Sbjct: 484 TEEALELLNVMINKGITPNTIIYSSM-ASALSREGRTDKIIQMFDSIQDATVRSDAALYN 542

Query: 115 LVIDGLCRVGRWEEARKK--LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            VI  LC+  RWE  R       +   G +P   TY ILI GL  +G++ EA  LL ++ 
Sbjct: 543 AVISSLCK--RWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELC 600

Query: 173 EK 174
            +
Sbjct: 601 SR 602



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   I G C+  ++ +A +    + V    + Y  ++  LC    + +A+ + D+M  +
Sbjct: 78  AYNAMIAGYCRAGQVAAARRLAAAVPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLR 137

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G  A     + ++       G  SA+  LQ L      L+    +LV+  +C  G  +E 
Sbjct: 138 GCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEG 197

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV----------QMKEKGCFPD 179
            + L +L   G  P +V+YN ++ GLC      + ++L+V          QM E GC PD
Sbjct: 198 VELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPD 257

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
              + T+I G       + A+  L +
Sbjct: 258 LRMYATIIDGICKDGHHEVANDILSR 283



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D+A   G    V  Y+++I G C   R  +         A  +     TY P++   
Sbjct: 65  RALDTA---GDAAGVVAYNAMIAGYC---RAGQVAAARRLAAAVPVPPNAYTYFPIVRSL 118

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
             +     A+ +L  +          +  ++++  CR G +  A + L  L  KG     
Sbjct: 119 CARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDS 178

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
              N++++ +C++G + E  +LL ++   GC PD  S+N V++G  +    D
Sbjct: 179 GNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWD 230



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           S +I  LC  GR  +A + LD     G   GVV YN +I G C+ G +
Sbjct: 48  SALIRSLCAAGRTADAARALDT---AGDAAGVVAYNAMIAGYCRAGQV 92


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 9/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            ++ E+    N   Y + I G+C+ R +D AI+       KG+  D++ Y  LING C  
Sbjct: 239 LEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCME 298

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEV 112
            R +EA  +  +M+  G+  E +TYN LI D + +QG    A  +   +     E N+ +
Sbjct: 299 KRSREAKLMLLEMIDVGLKPEPITYNALI-DGFMRQGDIEQAFRIKDEMVACGIEANLII 357

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ +++G+C+ G+ E+A + + ++ EKG+ P   TY++LI G C+   +  A +LL +MK
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417

Query: 173 EKGCFPDSTSFNTVIQGF 190
           ++   P   +++ +I G 
Sbjct: 418 KRKLAPTVLTYSVIINGL 435



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ E+R + N H YG  I+G  K  E++ A       +  G+  +V +Y++LI G C  
Sbjct: 519 MEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKE 578

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             + EA  +F  ++++ +  ++ TY+ LIH          A  +   L+      N   Y
Sbjct: 579 GNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTY 638

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+ G  ++A + L+++  KG+ P +VTYNILI+GLCK G I  A  L   ++ 
Sbjct: 639 NSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEG 698

Query: 174 KGCFPDSTSFNTVIQGFL-VKNET 196
           +G  P+  ++  ++ G+   KN T
Sbjct: 699 RGLTPNCVTYAAMVDGYCKSKNPT 722



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 96/175 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  GI  ++ ++++L+NG+C   ++++A+E+  +M+ +G+  +  TY+ LI  +   
Sbjct: 344 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG 403

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           Q    A  LL  +++ K    +  YS++I+GLCR G  +     L ++   GL P  V Y
Sbjct: 404 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVY 463

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             L+    K+G + E+  +L +M+E+G  PD   +N++I GF      + A ++L
Sbjct: 464 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYL 518



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I G CK   +  A       + + +  DV  YS LI+GL    ++ EA  +F
Sbjct: 564 NVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 623

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            ++  +G+     TYN LI  + ++     A  LL+ +       +I  Y+++IDGLC+ 
Sbjct: 624 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 683

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A+   D +  +GL P  VTY  +++G CK      A +LL +M  +G  PD+  +
Sbjct: 684 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 743

Query: 184 NTVIQGFLVKNE 195
           N VI  F  K E
Sbjct: 744 N-VILNFCCKEE 754



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 10/208 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   +   Y + I+G+ +  ++  A        +KG+  + F Y+SLI+G C    + +
Sbjct: 594 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 653

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A +L ++M  +GI  ++VTYN LI D   K G    A  L   +E      N   Y+ ++
Sbjct: 654 ASQLLEEMCIKGINPDIVTYNILI-DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C+      A + L+++  +G+ P    YN+++N  CK+    +A  L  +M EKG F
Sbjct: 713 DGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-F 771

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + SFNT+I+G+    +   A+  L++
Sbjct: 772 ASTVSFNTLIEGYCKSGKLQEANHLLEE 799



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 85/156 (54%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           +SL+  L   N+++   ++FD M A  +  ++ TY  +I  + +      A  +L  +  
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 243

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
                N+  Y+++I GLCR    +EA +    + +KGLVP + TY+ILING C +    E
Sbjct: 244 KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSRE 303

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           A  +L++M + G  P+  ++N +I GF+ + + ++A
Sbjct: 304 AKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 339



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y + I G C+ +        +D   K+ +   V  YS +INGLC   
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            L+    +  +MV  G+    V Y  L+  +  K+GR   +  +L+ +       ++  Y
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAH-AKEGRVEESRMILERMREQGILPDVFCY 498

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+  R EEAR  L ++ E+ L P   TY   I+G  K G +  AD+   +M  
Sbjct: 499 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 558

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            G  P+   +  +I+G   +     A S  +
Sbjct: 559 CGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 589



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +++       Y + ING+C+   +          +  G+  +  VY++L+       
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELNIEVY 113
           R++E+  + ++M  QGI  ++  YN LI    + K+   +   L++ LER +   N   Y
Sbjct: 475 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLER-RLRPNAHTY 533

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK------- 166
              IDG  + G  E A +  +++   G++P V  Y  LI G CK+G + EA         
Sbjct: 534 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILS 593

Query: 167 ----------------------------LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                                       +  +++EKG  P++ ++N++I G   +   D+
Sbjct: 594 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 653

Query: 199 ASSFLKK 205
           AS  L++
Sbjct: 654 ASQLLEE 660



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 46/239 (19%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  E R    N   Y   ++G CK +   +A +       +G+  D F+Y+ ++N  C 
Sbjct: 693 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 752

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             + ++A++LF +M+ +G  A  V++N LI + + K G+   A  LL+ +   ++  N  
Sbjct: 753 EEKFEKALDLFQEMLEKGF-ASTVSFNTLI-EGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 112 VYSLVIDGLCRVGRWEEARKK-----------------------------------LDQL 136
            Y+ +ID  C+ G   EA++                                     +++
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
             KG+ P  +TY ++I+  C++G +MEA KL  ++  KG      +++ +IQ    K E
Sbjct: 871 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEE 929



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 35/200 (17%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV+ Y+++I+  C    +K+A  +  +M  +G +  LVTYN +I      +    A+ L 
Sbjct: 214 DVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELK 273

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI------ 152
           +++       ++  Y ++I+G C   R  EA+  L ++ + GL P  +TYN LI      
Sbjct: 274 RSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 333

Query: 153 -----------------------------NGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
                                        NG+CK G + +A +++ +M EKG  PDS ++
Sbjct: 334 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 393

Query: 184 NTVIQGFLVKNETDRASSFL 203
           + +I+G        RA   L
Sbjct: 394 SLLIEGHCRGQNMARAFELL 413



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CK  ++  A       I+K    +   Y+SLI+  C    + EA  L+ +M  + +
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 840

Query: 72  TAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
                TY  L+H  +   G  S + AL + +     E +   Y ++ID  CR G   EA 
Sbjct: 841 MPTAKTYTSLLH-GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K  D++  KG+   V  Y+ LI  LCKK    E  KLL ++ E G      + + + +GF
Sbjct: 900 KLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGF 959

Query: 191 LVKNETDRASSFLK 204
            +    D A+  L+
Sbjct: 960 QIAGNMDEAAEVLR 973



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
            ++ E++F  N   Y   I+  CK   +  A +       + +      Y+SL++G     
Sbjct: 799  EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG 858

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
             + E   LF++MVA+GI  + +TY  +I D + ++G    A  L   +      +++  Y
Sbjct: 859  NMSEVSALFEEMVAKGIEPDKMTYYVMI-DAYCREGNVMEACKLKDEILVKGMPMSVAAY 917

Query: 114  SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
              +I  LC+   + E  K L+++ E G   G+ T +++  G    G + EA ++L  M +
Sbjct: 918  DALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVK 977

Query: 174  KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   ++TS   ++ G      ++ + + LK+
Sbjct: 978  FGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQ 1009


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   +   +NGMCK  +++ A       +++G+  D   Y++L+ G C      EA+
Sbjct: 216 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEAL 275

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F +M  +GI  ++VT+  LIH   +      A+ L++ +     ++N   ++ +IDG 
Sbjct: 276 SVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGF 335

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G  ++A   +  + +  + P VV YN LING C  G + EA +LL +M+ KG  PD 
Sbjct: 336 CKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 395

Query: 181 TSFNTVIQGFLVKNETDRA 199
            +++T+I  +    +T  A
Sbjct: 396 VTYSTIISAYCKNCDTHSA 414



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  DS +  G+  +V+ Y+ LI  LC     KEA+ +   M   G    +VTYN L+   
Sbjct: 136 RFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAF 195

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +       A  L+  +     + N+  ++ +++G+C+ G+ E+ARK  D++  +GL P  
Sbjct: 196 FRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDG 255

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           V+YN L+ G CK G   EA  +  +M +KG  PD  +F ++I 
Sbjct: 256 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIH 298



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 7/189 (3%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
           R K +   Y   ING C +  +D A +       KG+  DV  YS++I+  C       A
Sbjct: 355 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA 414

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
            EL  +M+ +G+  + +TY+ LI    E++    A  L + + +   + +   Y+ +IDG
Sbjct: 415 FELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG 474

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+ G  E A    D++ + G++P VVTY++LINGL K    MEA +LL ++  +   P 
Sbjct: 475 HCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPA 534

Query: 180 STSFNTVIQ 188
           +T ++ ++ 
Sbjct: 535 NTKYDALMH 543



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    V  Y++++  L   + L  A   FD M++ G+   + TYN LI     +  R  A
Sbjct: 111 GYVPSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +++L+ +       N+  Y+ ++    R G  + A + +  + + GL P +VT+N ++NG
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +CK G + +A K+  +M  +G  PD  S+NT++ G+
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGY 265



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +    +  E+D A       +  G+  ++  ++S++NG+C   ++++A ++F
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +G+  + V+YN L+    +      A+++   + +     ++  ++ +I  +C+ 
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 303

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A   + Q+ E+GL    VT+  LI+G CKKG + +A   +  M++    P    +
Sbjct: 304 GNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCY 363

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G+ +    D A   L +
Sbjct: 364 NALINGYCMVGRMDEARELLHE 385



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   ++ A       +K G+  DV  YS LINGL    R  EA +L  K+
Sbjct: 467 TYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-------ERDK---------YELNI 110
             +        Y+ L+H   + + + S +ALL+         E DK         + L+ 
Sbjct: 527 YHEEPIPANTKYDALMHCCRKAELK-SVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG 585

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            VYS++I G CR G   +A     Q+ ++G  P   +   LI GL + GM++EAD+++ Q
Sbjct: 586 SVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQ 645

Query: 171 MKEKGCFPDSTSFNTVI 187
           +       D+ +   +I
Sbjct: 646 LLNCCSLADAEASKALI 662



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y  ++  Y+ V+  L        AR+  D +   G+ P V TYNILI  LC +G   EA 
Sbjct: 112 YVPSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +L  M+  GC P+  ++NT++  F    E D A
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGA 204


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +C+       ++ +D   + G   +   Y+SL+ GLC    L ++++L D+++
Sbjct: 135 YTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLI 194

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   A  LL  +     E N+  Y++++ GLC+ GR E
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTE 254

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   +L  KG  P VV+YNIL+  LC +G   EA+ LL +M      P + ++N +I
Sbjct: 255 DAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILI 314

Query: 188 QGFLVKNETDRASSFLKK 205
               +   T+ A   L++
Sbjct: 315 GSLALHGRTEHALEVLEE 332



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG   DVF  + L+  LC   ++++A+++ + M+  GI  +  +Y  L+     K   
Sbjct: 89  VEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNV 148

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L+  +E   Y  N   Y+ ++ GLC  G   ++ + LD+L +KGLVP   TY+ L
Sbjct: 149 GYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFL 208

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +    K+    EA KLL ++  KG  P+  S+N ++ G   +  T+ A
Sbjct: 209 LEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDA 256



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  +  N   Y   + G+C        ++ +D  I+KG+  + + YS L+        
Sbjct: 158 MEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERG 217

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA +L D+++A+G    LV+YN L+     K+GR   A+ L + L    +  N+  Y+
Sbjct: 218 ADEASKLLDEIIAKGGEPNLVSYNVLL-TGLCKEGRTEDAIRLFRELPSKGFSPNVVSYN 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++  LC  GRWEEA   L +++     P  VTYNILI  L   G    A ++L +M   
Sbjct: 277 ILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRA 336

Query: 175 GCFPDSTSFNTVI 187
              P ++S+N +I
Sbjct: 337 RFKPTASSYNPII 349



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 4/187 (2%)

Query: 23  CKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           CK+R+    ++  I  GI  D   Y+ L++ LC    +  A++L DKM   G     VTY
Sbjct: 111 CKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTY 170

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N L+           ++ LL  L +     N   YS +++   +    +EA K LD++  
Sbjct: 171 NSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIA 230

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG  P +V+YN+L+ GLCK+G   +A +L  ++  KG  P+  S+N +++    +   + 
Sbjct: 231 KGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEE 290

Query: 199 ASSFLKK 205
           A+  L +
Sbjct: 291 ANVLLAE 297



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I KG   ++  Y+ L+ GLC   R ++A+ LF ++ ++G +  +V+YN L+  +  
Sbjct: 225 LDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLR-SLC 283

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +GR+  A  LL  +  D+   +   Y+++I  L   GR E A + L+++      P   
Sbjct: 284 NEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTAS 343

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +YN +I  LCK G +    K L QM  + C P+  ++N +
Sbjct: 344 SYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNAI 383



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +I  LC   +L   V+  D+M+ +       TYN  I    E+     A +++Q+L 
Sbjct: 345 YNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFSIIQSLG 403

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
             ++    E Y +VI  LCR G    A + L ++++ G  P   TY+ LI GLC +GM+ 
Sbjct: 404 NKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLN 463

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           EA ++   M+E    PD+ ++N++I G      TD A
Sbjct: 464 EAIEIFSVMEENN-KPDTENYNSLILGCCKSRRTDLA 499



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 13/213 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYS---------SLINGLCT 52
           ++   RFK     Y   I  +CK  ++D  +K   CLD  +Y          + I  LC 
Sbjct: 332 EMIRARFKPTASSYNPIIAHLCKDGKLDLVVK---CLDQMMYRHCNPNEGTYNAIATLCE 388

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              ++EA  +   +  +  ++    Y  +I     K   + A  LL  + +  +  +   
Sbjct: 389 EGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFT 448

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC  G   EA +    + E    P    YN LI G CK      A  +   M 
Sbjct: 449 YSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCCKSRRTDLALDVFEIMV 507

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            KG  P+ T++  +++G + + E D A+  L++
Sbjct: 508 GKGYLPNETTYTILVEGIIHEKEMDLATKVLRE 540



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 43/181 (23%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I  +C+      A        K G   D F YSSLI GLC    L EA+E+F  M 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM- 472

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                                               +  + + E Y+ +I G C+  R +
Sbjct: 473 -----------------------------------EENNKPDTENYNSLILGCCKSRRTD 497

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A    + +  KG +P   TY IL+ G+  +  +  A K+L +++ +     ST    V+
Sbjct: 498 LALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLRDVISQSTLERLVM 557

Query: 188 Q 188
           Q
Sbjct: 558 Q 558



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 49/86 (56%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+  +  +A K ++ +   G++P   +Y  L++ LC+KG +  A +L+ +M+E G   +
Sbjct: 107 LCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTN 166

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + ++N++++G  +     ++   L +
Sbjct: 167 TVTYNSLVRGLCMHGNLTQSLQLLDR 192


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 7/180 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+ K  + D A       +++GI  DV  Y++++  LC    + +A+++ ++MV
Sbjct: 209 YSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMV 268

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  + +TYN ++H          A+ +L+ +  D  E +   Y+ ++D LC+ GR  
Sbjct: 269 KNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCI 328

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EARK LD + ++GL P V+TY+ L++G   KG ++E   LL  M   G  PD   F+ +I
Sbjct: 329 EARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILI 388



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL- 62
             H YGI I   C+   +D       + IKKG  ++  +++ L+  LC   R   A+ + 
Sbjct: 97  TLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIV 156

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGL 120
             +M   G    + +YN L+     +     A+ LL  +  D  +   +V  YS +IDGL
Sbjct: 157 LRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGL 216

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G  ++A     ++ E+G++P VVTYN ++  LCK   + +A  +L +M + G  PD 
Sbjct: 217 FKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDC 276

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N+++ G+    ++  A   L+K
Sbjct: 277 ITYNSIVHGYCSSGQSKEAIGILEK 301



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICL-DVFVYSSLINGLCTF 53
           +TE     +   Y I + G+C       A++         G C  DV  YS++I+GL   
Sbjct: 160 MTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKE 219

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
               +A   + +M+ +GI  ++VTYN ++    + Q    AM +L  + ++    +   Y
Sbjct: 220 GDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITY 279

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++ G C  G+ +EA   L+++   G+ P  VTY  L++ LCK G  +EA K+L  M +
Sbjct: 280 NSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIK 339

Query: 174 KGCFPDSTSFNTVIQGFLVK 193
           +G  P+  +++T++ G+  K
Sbjct: 340 RGLKPNVITYSTLLHGYATK 359



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 20  NGMC-KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG C + R+I DS IK+G+  +V  YS+L++G  T   L E  +L D MV  GI  +   
Sbjct: 324 NGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHV 383

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
           ++ LI    + Q    AM +   + + +   ++  Y  +IDGLC+ GR ++A   L+
Sbjct: 384 FSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE 440


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 19  INGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           I G   +R I  A++    L      DVF Y++LING C  NR+ +A  + D+M ++  +
Sbjct: 131 IKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
            + VTYN +I     +     A+ +L  L  D  +  +  Y+++I+     G  +EA K 
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           +D++  +GL P + TYN +I G+CK+GM+  A +++  ++ KG  PD  S+N +++  L 
Sbjct: 251 MDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLN 310

Query: 193 KNETDRASSFLKK 205
           + + +     + K
Sbjct: 311 QGKWEEGEKLMTK 323



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 42/245 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y   ING CK+  ID A +       K    D   Y+ +I  LC+  
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 55  RLK-----------------------------------EAVELFDKMVAQGITAELVTYN 79
           +L                                    EA++L D+M+++G+  ++ TYN
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I    ++     A  +++ LE    E ++  Y++++  L   G+WEE  K + ++  +
Sbjct: 268 TIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              P VVTY+ILI  LC+ G I EA  LL  MKEKG  PD+ S++ +I  F  +   D A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 200 SSFLK 204
             FL+
Sbjct: 388 IEFLE 392



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 10/180 (5%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-- 82
           ++ +D  + +G+  D+F Y+++I G+C    +  A E+   +  +G   ++++YN L+  
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRA 307

Query: 83  ---HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                 WE+  +     L+  +  +K + N+  YS++I  LCR G+ EEA   L  + EK
Sbjct: 308 LLNQGKWEEGEK-----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL P   +Y+ LI   C++G +  A + L  M   GC PD  ++NTV+       + D+A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  +  K +   Y   I GMCK   +D A +       KG   DV  Y+ L+  L    
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQG 312

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + +E  +L  KM ++     +VTY+ LI           AM LL+ ++      +   Y 
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 372

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   CR GR + A + L+ +   G +P +V YN ++  LCK G   +A ++  ++ E 
Sbjct: 373 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 432

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
           GC P+S+S+NT+        +  RA
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRA 457



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I  +C+  +I+ A+       +KG+  D + Y  LI   C   RL  A+E  
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M++ G   ++V YN ++    +      A+ +   L       N   Y+ +   L   
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A   + ++   G+ P  +TYN +I+ LC++GM+ EA +LLV M+     P   ++
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N V+ GF   +  + A + L+ 
Sbjct: 512 NIVLLGFCKAHRIEDAINVLES 533



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+    + + Y   I   C+   +D AI+        G   D+  Y++++  LC   +
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A+E+F K+   G +    +YN +    W    +  A+ ++  +  +  + +   Y+ 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  +EA + L  +      P VVTYNI++ G CK   I +A  +L  M   G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538

Query: 176 CFPDSTSFNTVIQG 189
           C P+ T++  +I+G
Sbjct: 539 CRPNETTYTVLIEG 552



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVV---------------------------------- 146
           CR G + E+   L+ +  KG  P V+                                  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            YN LING CK   I +A ++L +M+ K   PD+ ++N +I     + + D A   L +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 94/171 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D+  +  +  DV +Y+ +I+G    + + EA++L+ KM+ +GIT  +VT+N LI+    +
Sbjct: 505 DTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRR 564

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A  +L+ +       ++  Y+ +++  C VG  +E    L ++    +VP  VTY
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTY 624

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +LI GLC++  + E+ +LL  M  KG  PDS ++NT+IQ F    E  +A
Sbjct: 625 TVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKA 675



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ++G+C    +D A+       K G+  DV  Y++L  G      +  A ++  KM+
Sbjct: 309 YNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKML 368

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG+  +LVTY  LI  + +      A+ L Q      ++LN+  Y++++  LC+VGR E
Sbjct: 369 LQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIE 428

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA    D++    L P  + Y+ILI+GLCK+G +  A +L  QM+ K  FP   +   V+
Sbjct: 429 EALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVL 488

Query: 188 QGFLVKNETDRASSFL 203
            G         A ++ 
Sbjct: 489 LGLFKNGNISEARNYF 504



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I+G  ++  I  A       I++GI   V  +++LING C    L EA ++ + +
Sbjct: 518 LYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVI 577

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   +VTY  L++   E          L  +E +        Y+++I GLCR  + 
Sbjct: 578 RLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKM 637

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            E+ + L+ +  KGL+P  VTYN +I   CK   I +A +L   M    C P   ++  +
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697

Query: 187 IQGFLV 192
           I    +
Sbjct: 698 INALCI 703



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 37/207 (17%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D+  Y++LI G C    ++EA++L  + +++G    ++ YN L+     K GR  
Sbjct: 370 QGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL-SCLCKVGRIE 428

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRV----------------------------- 123
            A+ L   +E  + E +  VYS++I GLC+                              
Sbjct: 429 EALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVL 488

Query: 124 ------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
                 G   EAR   D  +   L+  VV YNI+I+G  +   I EA +L  +M E+G  
Sbjct: 489 LGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGIT 548

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           P   +FNT+I GF  + +   A   L+
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLE 575



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 8/199 (4%)

Query: 13  HV-YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           HV Y + I G+C+  ++  +++       KG+  D   Y+++I   C    + +A++L++
Sbjct: 621 HVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYN 680

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            M+        VTY  LI+             ++ ++E     L    Y  +I   C  G
Sbjct: 681 MMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKG 740

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  +A    +Q+  KG V  +  Y+ +IN LCK+G+I EA    V M  +G  PD     
Sbjct: 741 QVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICK 800

Query: 185 TVIQGFLVKNETDRASSFL 203
           TV+  F  +        FL
Sbjct: 801 TVLNAFHQQGNNSSVFEFL 819



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 16  GIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            I I+G+C+  +++ AI       K +   +   +++++  C    +  A   F  MV  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKN 300

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  +  +YN L+H          A+     +E+   E ++  Y+ +  G   +G    A
Sbjct: 301 GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGA 360

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           RK + ++  +GL P +VTY  LI G C+ G I EA KL  +   +G
Sbjct: 361 RKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRG 406



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 23/157 (14%)

Query: 44  SSLINGLCTFNRLKEAVELF---DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           S LI+GLC  ++L++A+      +K+V   I    V+ N ++        +F  + L+  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVGPSI----VSINTIM-------SKFCKVGLID- 288

Query: 101 LERDKYELNIE--------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           + R  + L ++         Y++++ GLC  G  +EA    D + + G+ P VVTYN L 
Sbjct: 289 VARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLA 348

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            G    G++  A K++ +M  +G  PD  ++ T+I G
Sbjct: 349 KGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICG 385



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ +  KM      A + TYN L+H+       +     ++     + E      S+
Sbjct: 186 IHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGAPQSECTT---SI 242

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   + E+A   L   S K + P +V+ N +++  CK G+I  A      M + G
Sbjct: 243 LIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNG 301

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
              DS S+N ++ G  V    D A  F
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGF 328



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++++++   G      T + LIH   E+     A++ L    +     +I   + ++   
Sbjct: 223 DVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNK-VVGPSIVSINTIMSKF 281

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG  + AR     + + GL+    +YNIL++GLC  G + EA      M++ G  PD 
Sbjct: 282 CKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDV 341

Query: 181 TSFNTVIQGFLV 192
            ++NT+ +GFL+
Sbjct: 342 VTYNTLAKGFLL 353


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  I+     DV  Y+ +I+ LC    +++A  +  KM   G    + TYN LI     
Sbjct: 346 LDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCA 405

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A+ L+  +E+     NI  Y+++  GLC++ R + A++  ++   +GL P  VT
Sbjct: 406 VRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVT 465

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           YN L+NG C+   ++EA  +L +M +  C PD  ++ T+IQG +  N+   A
Sbjct: 466 YNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDA 517



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y I  +G+CK+R +D        A+ +G+  +   Y++L+NG C  +RL EA+++ 
Sbjct: 427 NIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDIL 486

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M     T + VTY  LI    +      A+ +   +E   Y++N +  +++  GL RV
Sbjct: 487 KEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARV 546

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++A     ++ ++G       Y + I+ L   G + EA  LL +M  KG  P+ T++
Sbjct: 547 GNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTY 606

Query: 184 NTVIQGFLVKNETDRASSFL 203
           NT+I+GF  +   D A + L
Sbjct: 607 NTMIKGFCRQGRLDDADAML 626



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I  G+  +   Y+S+I       ++++A++L D M+      ++VTY  +I    +++  
Sbjct: 315 INNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMI 374

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +LQ +  +  E NI  Y+ +I GLC V R EEA + +  + + G+ P + TY IL
Sbjct: 375 EQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTIL 434

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +GLCK   +  A ++  +   +G  P+  ++NT++ G+   +    A   LK+
Sbjct: 435 THGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKE 488



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+S++  L    +L  A  LF +M+  G++   +TY  +I   + K+    AM LL  +
Sbjct: 290 AYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDM 349

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            ++ Y  ++  Y++VI  LC+    E+A   L ++ E G  P + TYN LI GLC     
Sbjct: 350 IQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRP 409

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            EA +L+  M++ G  P+  ++  +  G       DRA
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRA 447



 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           D+ +  +  +   Y I I+ +CK + I+ A        + G   +++ Y++LI GLC   
Sbjct: 348 DMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVR 407

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-- 112
           R +EA+EL   M   G+   + TY  L H           +  L+ L+R K   N  +  
Sbjct: 408 RPEEALELVTLMEQGGVPPNIYTYTILTH----------GLCKLRRLDRAKEMFNEALAR 457

Query: 113 --------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                   Y+ +++G CR  R  EA   L ++ +    P  VTY  LI GL +   + +A
Sbjct: 458 GLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDA 517

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGFL-VKNETDRASSFLKK 205
            ++  +M+ KG   +  + N + +G   V N  D AS F ++
Sbjct: 518 LRMHDEMENKGYDVNFDTLNILARGLARVGNHKD-ASIFYRR 558



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 81/210 (38%), Gaps = 42/210 (20%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y   +NG C+   +  A+       +     D   Y++LI GL   N+L +A+
Sbjct: 459 LKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDAL 518

Query: 61  ELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRF----------------------- 92
            + D+M  +G      T N L        N +    F                       
Sbjct: 519 RMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCL 578

Query: 93  -------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A ALL  +    Y  N+  Y+ +I G CR GR ++A   L+ + E G+ P  
Sbjct: 579 STAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDT 638

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +YNILI     +G   +AD+L     E+G
Sbjct: 639 GSYNILIKEFHNQGRTQDADQLYATALERG 668



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV--TYNILIN 153
           +LLQ ++    E+   +    +    R GR++E+ +  + + E G  PG++   YN ++ 
Sbjct: 237 SLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLV 296

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            L K   +  A+ L  QM   G   ++ ++ ++IQ F +K + + A   L
Sbjct: 297 SLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLL 346


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 94/171 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D+  +  +  DV +Y+ +I+G    + + EA++L+ KM+ +GIT  +VT+N LI+    +
Sbjct: 505 DTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRR 564

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A  +L+ +       ++  Y+ +++  C VG  +E    L ++    +VP  VTY
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTY 624

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +LI GLC++  + E+ +LL  M  KG  PDS ++NT+IQ F    E  +A
Sbjct: 625 TVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKA 675



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ++G+C    +D A+       K G+  DV  Y++L  G      +  A ++  KM+
Sbjct: 309 YNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKML 368

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            QG+  +LVTY  LI  + +      A+ L Q      ++LN+  Y++++  LC+VGR E
Sbjct: 369 LQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIE 428

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA    D++    L P  + Y+ILI+GLCK+G +  A +L  QM+ K  FP   +   V+
Sbjct: 429 EALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVL 488

Query: 188 QGFLVKNETDRASSFL 203
            G         A ++ 
Sbjct: 489 LGLFKNGNISEARNYF 504



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y I I+G  ++  I  A       I++GI   V  +++LING C    L EA ++ + +
Sbjct: 518 LYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVI 577

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+   +VTY  L++   E          L  +E +        Y+++I GLCR  + 
Sbjct: 578 RLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKM 637

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            E+ + L+ +  KGL+P  VTYN +I   CK   I +A +L   M    C P   ++  +
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697

Query: 187 IQGFLV 192
           I    +
Sbjct: 698 INALCI 703



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 37/207 (17%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D+  Y++LI G C    ++EA++L  + +++G    ++ YN L+     K GR  
Sbjct: 370 QGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL-SCLCKVGRIE 428

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRV----------------------------- 123
            A+ L   +E  + E +  VYS++I GLC+                              
Sbjct: 429 EALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVL 488

Query: 124 ------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
                 G   EAR   D  +   L+  VV YNI+I+G  +   I EA +L  +M E+G  
Sbjct: 489 LGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGIT 548

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           P   +FNT+I GF  + +   A   L+
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLE 575



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 8/199 (4%)

Query: 13  HV-YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           HV Y + I G+C+  ++  +++       KG+  D   Y+++I   C    + +A++L++
Sbjct: 621 HVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYN 680

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            M+        VTY  LI+             ++ ++E     L    Y  +I   C  G
Sbjct: 681 MMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKG 740

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  +A    +Q+  KG V  +  Y+ +IN LCK+G+I EA    V M  +G  PD     
Sbjct: 741 QVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICK 800

Query: 185 TVIQGFLVKNETDRASSFL 203
           TV+  F  +        FL
Sbjct: 801 TVLNAFHQQGNNSSVFEFL 819



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 16  GIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            I I+G+C+  +++ AI       K +   +   +++++  C    +  A   F  MV  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKN 300

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  +  +YN L+H          A+     +E+   E ++  Y+ +  G   +G    A
Sbjct: 301 GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGA 360

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           RK + ++  +GL P +VTY  LI G C+ G I EA KL  +   +G
Sbjct: 361 RKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRG 406



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 44  SSLINGLCTFNRLKEAVELF---DKMVAQGITAELVTYNPLIHDNWEKQG------RFSA 94
           S LI+GLC  ++L++A+      +K+V   I    V+ N ++   + K G       F  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVGPSI----VSINTIM-SKFCKVGLIDVARSFFC 295

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +   L  D +  NI     ++ GLC  G  +EA    D + + G+ P VVTYN L  G
Sbjct: 296 LMVKNGLLHDSFSYNI-----LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
               G++  A K++ +M  +G  PD  ++ T+I G
Sbjct: 351 FLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICG 385



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ +  KM      A + TYN L+H+       +     ++     + E      S+
Sbjct: 186 IHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGAPQSECTT---SI 242

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   + E+A   L   S K + P +V+ N +++  CK G+I  A      M + G
Sbjct: 243 LIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNG 301

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
              DS S+N ++ G  V    D A  F
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGF 328



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++++++   G      T + LIH   E+     A++ L    +     +I   + ++   
Sbjct: 223 DVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNK-VVGPSIVSINTIMSKF 281

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+VG  + AR     + + GL+    +YNIL++GLC  G + EA      M++ G  PD 
Sbjct: 282 CKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDV 341

Query: 181 TSFNTVIQGFLV 192
            ++NT+ +GFL+
Sbjct: 342 VTYNTLAKGFLL 353


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 10/197 (5%)

Query: 4   TEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
            + R +G   N   Y   I+G CK   +D AI       ++G+ L+V  Y+ L++GLC  
Sbjct: 317 AQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKE 376

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA ++   M   G+ A  + Y  LIH ++  +    A+ LL  ++    EL+I +Y
Sbjct: 377 RKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             +I GLC V + +EA+  L ++ E GL P  + Y  +++   K G + EA  +L ++ +
Sbjct: 437 GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD 496

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P++   N  +Q F
Sbjct: 497 SGFQPNNGCLNEAVQLF 513



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G   DV  Y++LIN  C F R++ A   F  M  +G+ A +VT++  + D + K+G  
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV-DAFCKEGLV 309

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L   +      LN   Y+ +IDG C+ GR ++A   LD++  +G+   VVTY +L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++GLCK+  + EA+ +L  M++ G   +   + T+I G  +   +++A   L +
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y   IN  CK   +++A        ++G+  +V  +S+ ++  C    ++EA++
Sbjct: 255 KADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMK 314

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           LF +M  +G+     TY  LI D   K GR   A+ LL  + R    LN+  Y++++DGL
Sbjct: 315 LFAQMRVRGMALNEFTYTCLI-DGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  +  EA   L  + + G+    + Y  LI+G        +A  LL +MK KG   D 
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
           + +  +IQG    ++ D A S L K
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTK 458



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 2/152 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           +VF ++ +I+ LC    L EA  LF +M   G   ++VT+N LI D + K G    +  L
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLI-DGYGKCGELDEVEQL 245

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ + R   + ++  Y+ +I+  C+ GR E A      +  +G++  VVT++  ++  CK
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           +G++ EA KL  QM+ +G   +  ++  +I G
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDG 337



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 24/177 (13%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG+ LD+ +Y +LI GLC  ++L EA  L  KM   G+    + Y  ++ D   K G+  
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM-DACFKSGKVP 485

Query: 94  -AMALLQTLERDKYE----------------------LNIEVYSLVIDGLCRVGRWEEAR 130
            A+A+LQ +    ++                      L+  VY+ ++DG  + G   +A 
Sbjct: 486 EAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 545

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
               ++ + GL   +  Y   I+G C   M+ EA ++  +M   G  PD   +N +I
Sbjct: 546 ALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N+  +++VID LC+ G   EAR    ++ E G +P VVT+N LI+G  K G + E ++L+
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +M+  GC  D  ++N +I  F
Sbjct: 247 EEMRRSGCKADVVTYNALINCF 268



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 34/184 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L+E + KG   +  +YG  I G+C + ++D A        + G+  +  +Y+++++    
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 53  FNR----------------------LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
             +                      L EAV+LF++MV +G++ + V Y  L+ D + KQG
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALL-DGYLKQG 539

Query: 91  RFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
               A AL   +     +L++  Y+  I G C +    EAR+   ++   G+ P    YN
Sbjct: 540 NLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYN 599

Query: 150 ILIN 153
            LI 
Sbjct: 600 CLIT 603



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           L R+ R    R  + +L E+   P V T+NI+I+ LCK+G + EA  L  +MKE GC PD
Sbjct: 164 LLRLARDRSGRL-VRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPD 222

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
             +FN++I G+    E D     +++
Sbjct: 223 VVTFNSLIDGYGKCGELDEVEQLVEE 248


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 5/208 (2%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIKKGICLDVFV--YSSLINGLCTFNRLK 57
           L E  +KG   +   Y   ++ MC++ +++ A +  + +  FV  Y++LING C  ++++
Sbjct: 201 LAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKME 260

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E  ELF++M  +GI  +++TY+ +I+   E      A+A+L  +       N+  ++ ++
Sbjct: 261 EVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLM 320

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G    GR  EA    +++ ++G  P  V YN LI+GLC  G ++EA  +  +M+  G F
Sbjct: 321 KGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVF 380

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+ T+++T+I GF    +   AS    K
Sbjct: 381 PNETTYSTLIDGFAKAGDLVGASEIWNK 408



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN + ++  ++ A+        +G   +V  ++SL+ G     RL EA++L+++M
Sbjct: 280 TYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRM 339

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G     V YN LIH          A+++ Q +ER+    N   YS +IDG  + G  
Sbjct: 340 IQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDL 399

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +  +++   G +P VV Y  +++ LC+  M   A  L+  M    C P++ +FNT 
Sbjct: 400 VGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTF 459

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G     +T+ A   L +
Sbjct: 460 IKGLCCSGKTEWAMKVLNQ 478



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 2/169 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++G   +   Y++LI+GLC++ ++ EAV +  KM   G+     TY+ LI D + K G 
Sbjct: 340 IQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI-DGFAKAGD 398

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  +   +  +    N+ VY+ ++D LCR   +  A   ++ ++     P  +T+N 
Sbjct: 399 LVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNT 458

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            I GLC  G    A K+L QM++ GC P+ T++N V+ G      T  A
Sbjct: 459 FIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREA 507



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 92/166 (55%), Gaps = 17/166 (10%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + GI L+V+ Y+ L+  LC  +R+  A +L  +M  +G   + V+Y  ++          
Sbjct: 171 RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVV---------- 220

Query: 93  SAMALLQTLERDKYELN------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           S+M  L  +E  + EL+      + VY+ +I+G CR  + EE  +  ++++ +G+ P V+
Sbjct: 221 SSMCRLGKVEEAR-ELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVI 279

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           TY+ +IN L + G +  A  +L +M  +GC P+  +F ++++G+ +
Sbjct: 280 TYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFM 325



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G  K  ++  A       I  G   +V VY+ +++ LC  +    A+ L 
Sbjct: 382 NETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLI 441

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M         +T+N  I           AM +L  + +     N+  Y+ V+DGL   
Sbjct: 442 ENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNA 501

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            R  EA + + ++ E  +   +VTYN +++G C  GM   A ++  ++   G  PDS ++
Sbjct: 502 KRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITY 561

Query: 184 NTVIQGFLVKNETDRA 199
           NTVI  +  + E   A
Sbjct: 562 NTVIYAYCKQGEVKTA 577



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 97/203 (47%), Gaps = 8/203 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY   ++ +C+    + A+        G C  +   +++ I GLC   + + A+++ 
Sbjct: 417 NVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVL 476

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M   G    + TYN ++   +  +    A+ ++  +E  + + N+  Y+ ++ G C  
Sbjct: 477 NQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHA 536

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTS 182
           G ++ A +   +L   G  P  +TYN +I   CK+G +  A +L+ ++ +KG  +PD  +
Sbjct: 537 GMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFT 596

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + +++ G       D A   L K
Sbjct: 597 YTSLLWGVCNWIGVDEAVVHLDK 619



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 9/153 (5%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           D+FV   +IN        ++A++ F ++   G    +  YN ++ D    + +F  +  +
Sbjct: 109 DLFVI--VINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVL-DALLSENKFQMINGI 165

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              ++RD  ELN+  Y++++  LC+  R + ARK L ++S KG +P  V+Y  +++ +C+
Sbjct: 166 YNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCR 225

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G + EA +L   M+ K   P    +N +I GF
Sbjct: 226 LGKVEEAREL--SMRIKSFVP---VYNALINGF 253



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C   + + A+K        G   +V  Y+ +++GL    R +EA+++  ++    I
Sbjct: 460 IKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEI 519

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
            + LVTYN ++   +   G F  A+ +   L     + +   Y+ VI   C+ G  + A 
Sbjct: 520 KSNLVTYNTIL-SGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAI 578

Query: 131 KKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           + +D+L++KG   P V TY  L+ G+C    + EA   L +M  +G  P+  ++N +++G
Sbjct: 579 QLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRG 638

Query: 190 FLVK 193
              K
Sbjct: 639 LFSK 642



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 9/141 (6%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMAL 97
           ++  Y+++++G C     K A+++  K++  G   + +TYN +I+  + KQG   +A+ L
Sbjct: 522 NLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYA-YCKQGEVKTAIQL 580

Query: 98  LQTLER--DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           +  L +  + Y  ++  Y+ ++ G+C     +EA   LD++  +G+ P   T+N L+ GL
Sbjct: 581 VDRLTKKGEGYP-DVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639

Query: 156 CKK----GMIMEADKLLVQMK 172
             K    G I   D +L   K
Sbjct: 640 FSKLGHLGPIHIVDNILANGK 660



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y   I   CK  E+ +AI       KKG    DVF Y+SL+ G+C +  + EAV   DK
Sbjct: 560 TYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDK 619

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           M+ +GI     T+N L+   + K G    + ++  +
Sbjct: 620 MINEGICPNRATWNALVRGLFSKLGHLGPIHIVDNI 655


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 98/172 (56%), Gaps = 2/172 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
           KG+  DV+ ++ LIN LC        + LF++M + G   + VTYN LI D+    G+  
Sbjct: 399 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILI-DHLCSMGKLV 457

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           +A+ LL+ +E +    +   Y+ +ID LC+  R EEA +  DQ+   G+    VT+N LI
Sbjct: 458 NALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI 517

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +GLCK   I +A +L+ QM ++G  P + ++N+++  +  + +  +A+  L+
Sbjct: 518 DGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +CK   I+ A +        GI      +++LI+GLC   R+ +A EL ++M
Sbjct: 477 TYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 536

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G+    +TYN ++  ++ KQG     A +L+T+  + +E+++  Y  +I+GLC+ GR
Sbjct: 537 VKEGLQPSNITYNSIL-THYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A K L  +  KG+ P    YN +I  L ++  + +A  L  +M E G  PD+ ++  
Sbjct: 596 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKI 655

Query: 186 VIQGF 190
           V +G 
Sbjct: 656 VFRGL 660



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+ +C + ++ +A+         G       Y+++I+ LC   R++EA E+FD+M
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            A GI+   VT+N LI D   K  R   A  L++ + ++  + +   Y+ ++   C+ G 
Sbjct: 502 DAHGISRSAVTFNTLI-DGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGD 560

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A   L+ ++  G    VVTY  LINGLCK G    A KLL  M+ KG  P   ++N 
Sbjct: 561 LKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNP 620

Query: 186 VIQGFLVKNETDRASSFLKK 205
           VIQ    +N    A S  ++
Sbjct: 621 VIQSLFRRNNLRDALSLFRE 640



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T++  + +       I  +C+  ++ +A+          +  D   +++L+ G     
Sbjct: 185 EMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEG 244

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            ++ A+ +  KM+  G +   VT N LI + + K GR   A+  +Q    D +E +   Y
Sbjct: 245 SIEAALRVKTKMMETGCSPTRVTVNVLI-NGYCKMGRVEDALGYIQKEIADGFEPDQVTY 303

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +  +  LC+ G    A K +D + ++G  P V TYN +IN L K G + EA  ++ QM +
Sbjct: 304 NTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVD 363

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +GC PD+T+FNT+I     +N  + A
Sbjct: 364 RGCLPDTTTFNTLIVALCSQNRLEEA 389



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + ING CK+  ++ A       I  G   D   Y++ ++ LC    +  A+++ D M+ +
Sbjct: 270 VLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQE 329

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G   ++ TYN +I +   K G    A  ++  +       +   ++ +I  LC   R EE
Sbjct: 330 GHDPDVFTYNTVI-NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEE 388

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           A     +L+ KGL P V T+NILIN LCK G      +L  +MK  GC PD  ++N +I
Sbjct: 389 ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILI 447



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 8/178 (4%)

Query: 19  INGMCKIREIDSAIKK--------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           +    ++R  D A+          G+  D  VY+ L+N L   +R+K    ++++M  +G
Sbjct: 131 VESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRG 190

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           I  ++VT N LI          +A+ +L+ +       +   ++ ++ G    G  E A 
Sbjct: 191 IQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAAL 250

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           +   ++ E G  P  VT N+LING CK G + +A   + +    G  PD  ++NT + 
Sbjct: 251 RVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVH 308



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +++    G  +DV  Y +LINGLC   R + A++L   M  +GI      YNP+I   + 
Sbjct: 568 LETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFR 627

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-VGRWEEARKKLDQLSEKGLVPGVV 146
           +     A++L + +       +   Y +V  GLCR  G  +EA   L ++  KG +P   
Sbjct: 628 RNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFS 687

Query: 147 TYNILINGLCKKGM---IMEADKLLVQMKEKGCFPDSTSFNTVIQGFL-VKNETDRASSF 202
           ++ +L  GL   GM   ++ A +L++   EK  F +S    + I+G+L ++   D  ++F
Sbjct: 688 SFRMLAEGLLNLGMDDYLISAIELII---EKAKFRESDV--SAIRGYLKIRKYYDALATF 742



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + +  VY+ +++ L    R +      ++++++G+ P VVT N LI  LC+   +  A  
Sbjct: 157 QADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVL 216

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L +M      PD T+F T++QGF+ +   + A
Sbjct: 217 MLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAA 249



 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 90  GRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVT 147
           G F  M  L++ + R+ +E    V    ++   R+ R+++A   + +QL+  G+      
Sbjct: 103 GAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAV 162

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN L+N L +   +   + +  +M ++G  PD  + NT+I+     ++   A   L++
Sbjct: 163 YNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEE 220


>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
 gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
          Length = 213

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D F YSSLI+G      + EA  L D M++ G+T  ++TYN LI+    K G+ S A+ L
Sbjct: 8   DNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIY-GLCKSGKLSRAVNL 66

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
              L+      N   Y+ +ID  C+ G+  EA K   ++ E+G+ P V+TY+ILI GLC 
Sbjct: 67  FNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCT 126

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +G + EA KLL QM E    P+  ++ T+I G++
Sbjct: 127 QGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYI 160



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +RF  +   Y   I+G      ID A       +  G+  ++  Y+SLI GLC   +L  
Sbjct: 3   KRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSR 62

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           AV LF+K+ ++GI+   +TYN LI D + K+G+ + A  L Q +  +  +  +  YS++I
Sbjct: 63  AVNLFNKLQSKGISPNGITYNTLI-DEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILI 121

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC  G  EEA K LDQ+ E  + P  +TY  LI+G  K G + E  KL  +M  +G  
Sbjct: 122 YGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 181

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLK 204
           P +   N      +V N  +R    +K
Sbjct: 182 PTNWIGNWKRSDPVVVNNWNRKDGHMK 208


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++++    N   Y   I  +CK R +D A++       +G   D+  Y+++I  LC  N+
Sbjct: 404 MSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQ 463

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA  LF+ ++ +G+ A  +TYN LIH          A++L   +      L+I  Y+ 
Sbjct: 464 MEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNG 523

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  LCR G  + +   L +++EKG+ P  V+YN+LI+ LCK   + +A +L  +M  + 
Sbjct: 524 LIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQE 583

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++NT+I G         A + L+K
Sbjct: 584 LTPDIVTYNTLINGLCKMGWMHAALNLLEK 613



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y I I+G+CK+  + SA+K       KG    +  Y+ L++  C          + + 
Sbjct: 344 HTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEV 403

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G++  L  YN +I    + +    AM  +Q ++   Y+ +I  Y+ +I  LC   +
Sbjct: 404 MSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQ 463

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            EEA    + L  +G+V   +TYN LI+ L + G   +A  L   M   GC  D  S+N 
Sbjct: 464 MEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNG 523

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I+        DR+   L +
Sbjct: 524 LIKALCRDGNVDRSIMLLSE 543



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D     G   DV  ++ +++GLCT  RL+EA  L D+M+ +G     +TY  L+     
Sbjct: 230 LDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLL----- 284

Query: 88  KQGRFSAMALLQTLERDKY------ELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKG 140
                  + L   +E  +       ELN+ +++ VI G C + G+ +EA +  + +  KG
Sbjct: 285 -----KGLCLASQVEEARTMLGRVPELNVVLFNTVI-GRCLLDGKLKEAAELYETMGSKG 338

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
             P   TY+ILI+GLCK G +  A KLL +M++KG  P   ++  ++  F      D   
Sbjct: 339 CPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIR 398

Query: 201 SFLK 204
           + L+
Sbjct: 399 AMLE 402



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 84/160 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  LD+  Y+ LI  LC    +  ++ L  +M  +GI    V+YN LI +  + +    A
Sbjct: 513 GCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDA 572

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + L + +   +   +I  Y+ +I+GLC++G    A   L++L  + +   ++TYNILI+ 
Sbjct: 573 LELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISW 632

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            CK  ++ +A  LL +    G  P+  ++  ++Q F+ K+
Sbjct: 633 HCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVRKS 672



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           F +S     LC   R  EA+ +   M   G   + V Y  +IH    + G   A  LL  
Sbjct: 173 FTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDE 232

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +       ++  ++ ++ GLC +GR  EA + +D++  +G VP  +TY  L+ GLC    
Sbjct: 233 MFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQ 292

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           + EA  +L ++ E     +   FNTVI   L+  +   A+  
Sbjct: 293 VEEARTMLGRVPEL----NVVLFNTVIGRCLLDGKLKEAAEL 330



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEVYSLV 116
           A+ L D++  +  ++    +YN ++            ++L + +  RD+       +S+ 
Sbjct: 119 ALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIA 178

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
              LCR+GR +EA   L  ++  G VP  V Y  +I+ LC +G + EA  LL +M   GC
Sbjct: 179 ARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGC 238

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             D  +FN ++ G         A+  + + M
Sbjct: 239 SADVNTFNDIVHGLCTLGRLREAARLVDRMM 269



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 62/112 (55%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ +L+++ R     +  +Y  VI  LC  G   EA   LD++   G    V T+N +++
Sbjct: 191 ALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVH 250

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLC  G + EA +L+ +M  +GC P++ ++  +++G  + ++ + A + L +
Sbjct: 251 GLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGR 302


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 35/178 (19%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H Y  R N     R +D+   KGI  D + Y SLI+G+C   RL+EA  LFDKMV  G+ 
Sbjct: 270 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 329

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
              VTYN LI                                   DG C  G  E A   
Sbjct: 330 PNAVTYNTLI-----------------------------------DGYCNKGDLERAFSY 354

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            D++ +KG++P V TYN+L++ L  +G + EAD ++ +M++KG  PD+ ++N +I G+
Sbjct: 355 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 412



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING  +      A       + KGI      Y+SLI  L   NR+KEA +LF+K+
Sbjct: 404 TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 463

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + QG++ +++ +N ++  +        A  LL+ ++R     +   ++ ++ G CR G+ 
Sbjct: 464 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 523

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR  LD++  +G+ P  ++YN LI+G  ++G I +A ++  +M   G  P   ++N +
Sbjct: 524 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 583

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+      E D A   LK+
Sbjct: 584 IKCLCKNQEGDLAEELLKE 602



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I   V+ ++ ++N LC   +LK+A E    M   G    +V+YN +IH    +     A 
Sbjct: 223 ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGAR 282

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +L  +     E +   Y  +I G+C+ GR EEA    D++ E GLVP  VTYN LI+G 
Sbjct: 283 RILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 342

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C KG +  A     +M +KG  P  +++N ++    ++     A   +K+
Sbjct: 343 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 392



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+ + +   C++R  D A K       KGI   +   + +++     NR++ A  L+ +M
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I++ + T+N ++ +   K+G+   A   +  +E   ++ N+  Y+ +I G    G 
Sbjct: 219 FRLRISSTVYTFNIMV-NVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 277

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E AR+ LD +  KG+ P   TY  LI+G+CK+G + EA  L  +M E G  P++ ++NT
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 186 VIQGFLVKNETDRASSF 202
           +I G+  K + +RA S+
Sbjct: 338 LIDGYCNKGDLERAFSY 354



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V+  L+   C   R  EA + F  M  +GI  ++ T N ++    +      A  L   +
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R +    +  ++++++ LC+ G+ ++AR+ +  +   G  P VV+YN +I+G   +G I
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A ++L  M+ KG  PDS ++ ++I G   +   + AS    K
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDK 322



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++E+D   +K +  D   +++L+ G C   +++EA  L D+M  +GI  + ++YN LI  
Sbjct: 495 LKEMD---RKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A  +   +    +   +  Y+ +I  LC+    + A + L ++  KG+ P 
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611

Query: 145 VVTYNILINGL 155
             TY  LI G+
Sbjct: 612 DSTYLSLIEGM 622



 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   ++GI  D   Y++LI+G      +K+A  + D+M++ G    L+TYN LI    +
Sbjct: 530 LDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCK 589

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            Q    A  LL+ +       +   Y  +I+G+  V
Sbjct: 590 NQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 625


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 18  RINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
           R    C+I   D+    I+ G   D+  Y++LING C+  +++EA EL +  + +G+   
Sbjct: 317 RFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPN 376

Query: 75  LVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
             +Y PLIH  + K G +  A  LL  +    + L++  Y  ++ GL   G  + A    
Sbjct: 377 KFSYTPLIHA-FSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVR 435

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           D++ E+G++P    YN+L++GLCKKG    A +LLV+M ++   PD+    T++ GF+  
Sbjct: 436 DKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRH 495

Query: 194 NETDRASSFLK 204
              D A    +
Sbjct: 496 GNLDEAKKLFQ 506



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   ++  Y++LI+G C    ++ A  LF ++  +G    + TY  +I + + K+G+F 
Sbjct: 231 KGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMI-NAFCKKGKFE 289

Query: 94  AM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           A+  LL  ++     +++++++ +ID   + G   EA   +  + E G  P + TYN LI
Sbjct: 290 AVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLI 349

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           NG C KG + EA++LL     +G FP+  S+  +I  F    E  RAS  L
Sbjct: 350 NGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELL 400



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 11/216 (5%)

Query: 3   LTEQRF-KG---NFHVYGIRINGMCKIREIDSA------IK-KGICLDVFVYSSLINGLC 51
           L E+R+ KG   N   Y   I+G CK  +I+ A      +K KG    V  Y ++IN  C
Sbjct: 224 LIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFC 283

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              + +   +L  +M  +G+   L  +N +I   ++      A   ++ +     E ++ 
Sbjct: 284 KKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMA 343

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I+G C  G+  EA + L+    +GL P   +Y  LI+   K G  + A +LL++M
Sbjct: 344 TYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEM 403

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            E+G   D  ++  ++ G +V  E D A +   K M
Sbjct: 404 SERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMM 439



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +Q    +  V    ++G  +   +D A       I++GI   V   +++I G C + 
Sbjct: 472 EMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYG 531

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            + +A+  F +M     + +  TY+ +I D + KQ     A+ +   + +   + N+  +
Sbjct: 532 MMNDALLCFKRMFNGVHSPDEFTYSTII-DGYVKQNDLRGALRMFGLMLKKTCKPNVVTF 590

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G CR G    A K  +++   G  P VVTY ILI   CK+G + +A     QM  
Sbjct: 591 TSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLI 650

Query: 174 KGCFPDSTSFNTVIQGFLVKN 194
             C P+  +FN ++ G    N
Sbjct: 651 NKCIPNDATFNYLVNGLTNNN 671



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G  LD+  Y +L++GL     +  A+ + DKM+ +GI  +   YN L+     K+GRF
Sbjct: 405 ERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLM-SGLCKKGRF 463

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A  LL  +       +  V + ++DG  R G  +EA+K      E+G+   VV  N +
Sbjct: 464 PAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAM 523

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           I G CK GM+ +A     +M      PD  +++T+I G++ +N+
Sbjct: 524 IKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQND 567



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 2/177 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +   +D +    +  GLC   +++E   L +K   +G    +V YN LI D + K
Sbjct: 191 DEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLI-DGYCK 249

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G    A  L + L+   +   ++ Y  +I+  C+ G++E   K L ++ E+GL   +  
Sbjct: 250 NGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQI 309

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +N +I+   K G  +EA   +  M E GC PD  ++NT+I G   K +   A   L+
Sbjct: 310 FNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLE 366



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           ++Y + ++G+CK     +A       + + +  D FV ++L++G      L EA +LF  
Sbjct: 448 NIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQL 507

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            + +GI   +V  N +I    +      A+   + +    +  +   YS +IDG  +   
Sbjct: 508 TIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQND 567

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A +    + +K   P VVT+  LING C+ G +  A+K+  +M+  G  P+  ++  
Sbjct: 568 LRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTI 627

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I  F  + +  +A  F ++
Sbjct: 628 LIGYFCKEGKLTKACFFFEQ 647



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 19  INGMCKIREIDSAIKKGICL----------DVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           I G CK   ++ A+   +C           D F YS++I+G    N L+ A+ +F  M+ 
Sbjct: 524 IKGYCKYGMMNDAL---LCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLK 580

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +     +VT+  LI+          A  + + +    +E N+  Y+++I   C+ G+  +
Sbjct: 581 KTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTK 640

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           A    +Q+     +P   T+N L+NGL     I  + K
Sbjct: 641 ACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSK 678



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAM 95
           LD FV SSL+  L  F   KE   L + M ++ +  T E +++   +   +   G     
Sbjct: 94  LDGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSF---VISAYAGSGLVKEA 150

Query: 96  ALLQTLERDKYELNIEVYSL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
             L     D +    +V++   +++ L   G+ E ARK  D++ ++       T  I+  
Sbjct: 151 LELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTK 210

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK+G + E   L+ +   KGC P+   +NT+I G+    + +RA+   K+
Sbjct: 211 GLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKE 262



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   +   ING C+  +++ A K        G   +V  Y+ LI   C   +L +A  
Sbjct: 584 KPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACF 643

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQG------RFSAMALLQTLE------RDKYELN 109
            F++M+         T+N L++      G      R ++   L TLE       D ++  
Sbjct: 644 FFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNL-TLEFFGMMISDGWDWR 702

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  Y+ ++  LC+    + A +  D++  KG  P  V++  L++GLC +G + + + ++ 
Sbjct: 703 IAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEGRLQDWNNVIP 762

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               +     +  ++  +  FL +  T  AS  L+
Sbjct: 763 CNFNERQLQIAVKYSEKLDQFLSEGLTSDASLLLQ 797


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 110/203 (54%), Gaps = 9/203 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L ++  +     YG  ING+CK+ + +SA+       +  I   V +Y+++I+ LC    
Sbjct: 32  LVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGH 91

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A  LF +M  +GI  +++TY+ +I D++ + GR++ A  LL+ +   +   ++  +S
Sbjct: 92  HIHAQNLFTEMHDKGIFPDVITYSGMI-DSFCRSGRWTDAEQLLRDMIERQINPDVVTFS 150

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+ L + G+  EA +    +  +G+ P  +TYN +I+G CK+  + +A ++L  M  K
Sbjct: 151 ALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASK 210

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
            C PD  +F+T+I G+      D
Sbjct: 211 SCSPDVVTFSTLINGYCKAKRVD 233



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   DV  +++L+NGLC   R+ +A+ L D+MV +G       Y  +I+   +    
Sbjct: 2   VETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDT 57

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ LL  +E    + ++ +Y+ +ID LC+ G    A+    ++ +KG+ P V+TY+ +
Sbjct: 58  ESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+  C+ G   +A++LL  M E+   PD  +F+ +I   + + +   A
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ I  DV  +S+LIN L    ++ EA E++  M+ +GI    +TYN +I D + KQ R
Sbjct: 138 IERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMI-DGFCKQDR 196

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + A  +L ++       ++  +S +I+G C+  R +   +   ++  +G+V   VTY  
Sbjct: 197 LNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LI+G C+ G +  A  LL  M   G  P+  +F +++     K E  +A + L+
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILE 310



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   +   +   IN + K  ++  A       +++GI      Y+S+I+G C  +
Sbjct: 136 DMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQD 195

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A  + D M ++  + ++VT++ LI+   + +   + M +   + R     N   Y+
Sbjct: 196 RLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYT 255

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+VG  + A+  L+ +   G+ P  +T+  ++  LC K  + +A  +L  +++ 
Sbjct: 256 TLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKS 315



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +   ING CK + +D+ +       ++GI  +   Y++LI+G C    L  A +L + M
Sbjct: 218 TFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVM 277

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           ++ G+    +T+  ++     K+    A A+L+ L++ +
Sbjct: 278 ISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSE 316


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           +TE+    +   Y   I+  CK R +       D  ++ G+ +D F  ++L+  LC   R
Sbjct: 412 MTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 471

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +EA EL      +G   + V+Y  ++   +++     A+ L   + + K   +I  Y+ 
Sbjct: 472 YEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNT 531

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC +G+  EA  KL++L +KGLVP   TYNI+I+  CK+G + +A +   +M E  
Sbjct: 532 LIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENY 591

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  + NT++ G  +  + ++A
Sbjct: 592 FKPDVVTCNTLMNGLCLHGKLEKA 615



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E R KG   +   + I + G+C+  +++ A+       ++G+  DV  Y++LI+  C 
Sbjct: 374 LEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCK 433

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              + +A  L D+MV  G+  +  T N L++ N  K+ R+  A  LL++  +  +  +  
Sbjct: 434 ARNVAKAFVLMDEMVRSGLKMDTFTLNTLLY-NLCKEKRYEEAEELLRSPPQRGFVPDEV 492

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y  V+    +  + E A    D++S++ L P + TYN LI GLC  G + EA   L ++
Sbjct: 493 SYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNEL 552

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +KG  PD T++N +I  +  + + ++A  F  K
Sbjct: 553 MKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNK 586



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   K+ +   ++ Y++LI GLCT  +L EA++  ++++ +G+  +  TYN +IH   ++
Sbjct: 515 DEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKE 574

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A      +  + ++ ++   + +++GLC  G+ E+A K  +  +EKG    V+TY
Sbjct: 575 GDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITY 634

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N LI  LCK G +  A      M+ +G  PD+ ++N V+        ++ A + L K
Sbjct: 635 NTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHK 691



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 1/171 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFS 93
           G   D++ Y+ L  GLC   ++ EA +L D+M    I + ++VTYN L+   ++ Q    
Sbjct: 310 GFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSD 369

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ LL+ +     + ++  +++V+ GLCR G+ EEA  +L  ++E+GL P V+TYN LI+
Sbjct: 370 ALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLID 429

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             CK   + +A  L+ +M   G   D+ + NT++     +   + A   L+
Sbjct: 430 AYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLR 480



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 100/201 (49%), Gaps = 10/201 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEA 59
           F+ +   Y +   G+C+  ++D A K          +  DV  Y++L++    + R  +A
Sbjct: 311 FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDA 370

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
           + L ++M  +G+ + LVT+N ++     ++G+   A+  L+ +  +    ++  Y+ +ID
Sbjct: 371 LNLLEEMRDKGVKSSLVTHN-IVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLID 429

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+     +A   +D++   GL     T N L+  LCK+    EA++LL    ++G  P
Sbjct: 430 AYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVP 489

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           D  S+ TV+  +  +N+ + A
Sbjct: 490 DEVSYGTVMAAYFKENKPEPA 510



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 51/231 (22%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEA 59
           R   N + + + ++  C    +  A+         G+  DV  Y++L+   C    L EA
Sbjct: 205 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEA 264

Query: 60  VELFDKMVAQGITAELVTYNPLIHD----NWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             L  +M  +GI     TYN L+       W KQ    A  +++ +    +E ++  Y++
Sbjct: 265 RTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQ----ATNVVEAMTAFGFEPDLWTYNV 320

Query: 116 VIDGLCRVGRWEEARK------------------------------------KLDQLSEK 139
           +  GLC+ G+ +EA K                                     L+++ +K
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK 380

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G+   +VT+NI++ GLC++G + EA   L  M E+G  PD  ++NT+I  +
Sbjct: 381 GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAY 431



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++++++   + + Y   I G+C I ++  AI       KKG+  D   Y+ +I+  C   
Sbjct: 516 EMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEG 575

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPL-----IHDNWEKQGRFSAMALLQTLERDKYELN 109
            L++A +  +KM+      ++VT N L     +H   EK     A+ L ++      +++
Sbjct: 576 DLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEK-----AIKLFESWAEKGKKVD 630

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I  LC+ G  + A      +  +GL P   TYN++++ L + G   EA  +L 
Sbjct: 631 VITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLH 690

Query: 170 QMKEKGCFPDSTSFNTV 186
           ++ E G   +  S+  +
Sbjct: 691 KLDESGKLSERFSYPLI 707



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 43/221 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+  CK  +++ A       ++     DV   ++L+NGLC   +L++A++LF+  
Sbjct: 563 TYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESW 622

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G   +++TYN LI    +     +A+     +E    + +   Y++V+  L   GR 
Sbjct: 623 AEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRS 682

Query: 127 EEARKKLDQLSEKGLV---------------------PGVVT---------------YNI 150
           EEA+  L +L E G +                     P V +               YN 
Sbjct: 683 EEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNK 742

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            +  LC  G + EA  +L +M +KG   DS+++ T+++G +
Sbjct: 743 SVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLI 783



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           + ++++F  ++A  +     T+N L+H +  K     A++ L T++      ++  Y+ +
Sbjct: 192 QASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTL 251

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +   CR G   EAR  L ++ ++G+ P   TYN L++   + G I +A  ++  M   G 
Sbjct: 252 LKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGF 311

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            PD  ++N +  G     + D A
Sbjct: 312 EPDLWTYNVLAAGLCQAGKVDEA 334



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           L P   T+N+L++  C KG + +A   L  M+  G  PD  ++NT+++    K     A 
Sbjct: 206 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEAR 265

Query: 201 SFLKK 205
           + L +
Sbjct: 266 TLLAR 270


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E R   +   Y + ING+CK  ++D A K       +G+  +   +++LING C   R
Sbjct: 286 MMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGR 345

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
               +E++ +M+ +G+  +++TYN LI+   +      A  L+  + +   + +   Y++
Sbjct: 346 ADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTM 405

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG C+ G  E A +   ++ ++G+    V +  LI+G C++G ++EA++ L +M E G
Sbjct: 406 LIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAG 465

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++  VI GF  K +       LK+
Sbjct: 466 IKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 7/182 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK+ ++  A K       +G+  D F Y+ LI+G C    L+ A+E+  +M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  + V +  LI     +     A   L+ +     + +   Y++VI G C+ G  
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +   K L ++   G VPGVVTYN+L+NGLCK+G +  A+ LL  M   G  PD  ++N +
Sbjct: 487 KTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNIL 546

Query: 187 IQ 188
           ++
Sbjct: 547 LE 548



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING CK   +D   +         +  DVF YS LINGLC   +L +A +LF +M  +G+
Sbjct: 267 INGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL 326

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               VT+  LI+ +         M + Q + R   + ++  Y+ +I+GLC+VG   EA+K
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + +++++GL P   TY +LI+G CK+G +  A ++  +M ++G   D+ +F  +I GF 
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFC 446

Query: 192 VKNETDRASSFLKK 205
            + +   A   L++
Sbjct: 447 REGQVIEAERTLRE 460



 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 9/193 (4%)

Query: 19  INGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING C     D         ++KG+  DV  Y++LINGLC    L+EA +L  +M  +G+
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             +  TY  LI D   K+G   SA+ + + + ++  EL+   ++ +I G CR G+  EA 
Sbjct: 397 KPDKFTYTMLI-DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L ++ E G+ P   TY ++I+G CKKG +    KLL +M+  G  P   ++N ++ G 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 191 LVKNETDRASSFL 203
             + +   A+  L
Sbjct: 516 CKQGQMKNANMLL 528



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 11/184 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           + + ++ +CK  +I+ A        K+G+   V  +++LING C    L +   L   M+
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              +  ++ TY+ LI +   K+G+   +    L+  +R     ++  ++ +I+G C  GR
Sbjct: 288 ENRVFPDVFTYSVLI-NGLCKEGQLDDANKLFLEMCDRGLVPNDV-TFTTLINGHCVTGR 345

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +   +   Q+  KG+ P V+TYN LINGLCK G + EA KL+++M ++G  PD  ++  
Sbjct: 346 ADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTM 405

Query: 186 VIQG 189
           +I G
Sbjct: 406 LIDG 409



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 86/156 (55%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   DV  ++ L++ LC  +++ EA  LF ++  +G+   +V++N LI+   +       
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L + +  ++   ++  YS++I+GLC+ G+ ++A K   ++ ++GLVP  VT+  LING
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            C  G      ++  QM  KG  PD  ++NT+I G 
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 7/158 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T++  K +   Y + I+G CK  +++SA       +K+GI LD   +++LI+G C   
Sbjct: 390 EMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREG 449

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ EA     +M+  GI  +  TY  +IH   +K    +   LL+ ++ D +   +  Y+
Sbjct: 450 QVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYN 509

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           ++++GLC+ G+ + A   LD +   G+VP  +TYNIL+
Sbjct: 510 VLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 77/152 (50%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           L + L   N    A   +++++  G   ++  +N L+H   ++     A  L   + +  
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
               +  ++ +I+G C+ G  ++  +    + E  + P V TY++LINGLCK+G + +A+
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           KL ++M ++G  P+  +F T+I G  V    D
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
            V+S L+N         +A++ F  +    +     +   L     +      A A  + 
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +    Y  ++  +++++  LC+  +  EA+    ++ ++GL P VV++N LING CK G 
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           + +  +L   M E   FPD  +++ +I G   + + D A+
Sbjct: 276 LDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 14  VYGIRINGMCKIREIDSAIK-----KG--------ICLDVFVYSSLINGLCTFNRLKEAV 60
            +GI IN +CK R ID A++     KG        +  D  +Y++LI+GLC   R +EA+
Sbjct: 189 TFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEAL 248

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L  KM +        T+N LI + + + G    A  L   +E  + E N+   + ++DG
Sbjct: 249 CLMGKMRSDQCAPTTATFNCLI-NGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDG 307

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +C+  R   A +    + +KGL    VTY + IN  C    + +A + L +M + GCFPD
Sbjct: 308 MCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPD 367

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           +  + T+I G       D ASS + K
Sbjct: 368 AVVYYTLICGLAQAGRLDDASSVVSK 393



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING C+  EI+ A K         I  +V   ++L++G+C  NR+  AVE F  M  +G+
Sbjct: 270 INGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGL 329

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               VTY   I+          AM  L  + +D    +  VY  +I GL + GR ++A  
Sbjct: 330 KGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASS 389

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + +L E G     V YN+LI+  CKK  +  A + L +M+  G  PDS ++NT+I  F 
Sbjct: 390 VVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFS 449

Query: 192 VKNETDRASSFLKK 205
                  A  F+KK
Sbjct: 450 KIGNFKLAHKFMKK 463



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQG------ITAELVTYNPLIHDNWEKQGRFS 93
           V  +  LIN LC F R+ +A+E+F+KM  +       +  + + YN LI D   K GR  
Sbjct: 187 VITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLI-DGLCKVGRQE 245

Query: 94  -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L+  +  D+       ++ +I+G CR G  E A K  +++    + P V+T N L+
Sbjct: 246 EALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLV 305

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +G+CK   I  A +    M++KG   ++ ++   I  F   N  ++A  FL
Sbjct: 306 DGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFL 356



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I G+ +   +D A        + G CLD   Y+ LI+  C  N+L  A E  ++M
Sbjct: 370 VYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEM 429

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL-ERDKYELNIEVYSLVIDGLCRVG 124
              G+  + VTYN LI   + K G F  A   ++ + E +     +  Y  +I   C   
Sbjct: 430 ELAGVKPDSVTYNTLI-SYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNN 488

Query: 125 RWEEARKKLDQLSE--KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             +EA K   +++     + P  V YNILI+ LCK+  +  A  LL  MK +G  P++T+
Sbjct: 489 NIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTT 548

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N++ +    KN  D+A   + +
Sbjct: 549 YNSIFKALRDKNWLDKAFKLMDR 571



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I+  CK  ++D A +        G+  D   Y++LI+        K A +   KM 
Sbjct: 406 YNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMT 465

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLER--DKYELNIEVYSLVIDGLCRVG 124
            + G++  + TY  LIH          A+ + + +     K   N  +Y+++ID LC+  
Sbjct: 466 EEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQT 525

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           +   A   LD +  +G++P   TYN +   L  K  + +A KL+ +M E+ C PD
Sbjct: 526 QVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPD 580



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 75/207 (36%), Gaps = 54/207 (26%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------------GICLDVFVYSSLING 49
           L E  F+ N    GI  N + KI  ++  +K+              I  D    + LI+ 
Sbjct: 67  LPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISK 126

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
           LC       A  + D ++      +    N L+     K   F  M LL    R   ++N
Sbjct: 127 LCRSGNTNLAWNILDNLMMLNGLKDAAPCNALL-TGLGKAREFGKMNLLM---RKMKDMN 182

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I+                               P V+T+ ILIN LCK   I +A ++  
Sbjct: 183 IQ-------------------------------PTVITFGILINHLCKFRRIDDALEVFE 211

Query: 170 QMK----EKGCF--PDSTSFNTVIQGF 190
           +MK    E   F  PD+  +NT+I G 
Sbjct: 212 KMKGEKEETKVFVAPDTIMYNTLIDGL 238


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            ++ E+R + N H YG  I+G  K  E++ A       +  G+  +V +Y++LI G C  
Sbjct: 510 MEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKE 569

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             + EA  +F  ++++ +  ++ TY+ LIH          A  +   L+      N   Y
Sbjct: 570 GNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTY 629

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+ G  ++A + L+++  KG+ P +VTYNILI+GLCK G I  A  L   ++ 
Sbjct: 630 NSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEG 689

Query: 174 KGCFPDSTSFNTVIQGFL-VKNET 196
           +G  P+  ++  ++ G+   KN T
Sbjct: 690 RGLTPNCVTYAAMVDGYCKSKNPT 713



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 96/175 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  GI  ++ ++++L+NG+C   ++++A+E+  +M+ +G+  +  TY+ LI  +   
Sbjct: 335 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG 394

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           Q    A  LL  +++ K    +  YS++I+GLCR G  +     L ++   GL P  V Y
Sbjct: 395 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVY 454

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             L+    K+G + E+  +L +M+E+G  PD   +N++I GF      + A ++L
Sbjct: 455 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYL 509



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I G CK   +  A       + + +  DV  YS LI+GL    ++ EA  +F
Sbjct: 555 NVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 614

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            ++  +G+     TYN LI  + ++     A  LL+ +       +I  Y+++IDGLC+ 
Sbjct: 615 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 674

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A+   D +  +GL P  VTY  +++G CK      A +LL +M  +G  PD+  +
Sbjct: 675 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 734

Query: 184 NTVIQGFLVKNE 195
           N VI  F  K E
Sbjct: 735 N-VILNFCCKEE 745



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 10/208 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   +   Y + I+G+ +  ++  A        +KG+  + F Y+SLI+G C    + +
Sbjct: 585 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 644

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A +L ++M  +GI  ++VTYN LI D   K G    A  L   +E      N   Y+ ++
Sbjct: 645 ASQLLEEMCIKGINPDIVTYNILI-DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 703

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C+      A + L+++  +G+ P    YN+++N  CK+    +A  L  +M EKG F
Sbjct: 704 DGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-F 762

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
             + SFNT+I+G+    +   A+  L++
Sbjct: 763 ASTVSFNTLIEGYCKSGKLQEANHLLEE 790



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
           S + KG+  D++ Y  LING C   R +EA  +  +M+  G+  E +TYN LI D + +Q
Sbjct: 266 SMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI-DGFMRQ 324

Query: 90  GRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G    A  +   +     E N+ +++ +++G+C+ G+ E+A + + ++ EKG+ P   TY
Sbjct: 325 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 384

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++LI G C+   +  A +LL +MK++   P   +++ +I G 
Sbjct: 385 SLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y + I G C+ +        +D   K+ +   V  YS +INGLC   
Sbjct: 371 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 430

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            L+    +  +MV  G+    V Y  L+  +  K+GR   +  +L+ +       ++  Y
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAH-AKEGRVEESRMILERMREQGILPDVFCY 489

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C+  R EEAR  L ++ E+ L P   TY   I+G  K G +  AD+   +M  
Sbjct: 490 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            G  P+   +  +I+G   +     A S  +
Sbjct: 550 CGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 580



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ +++       Y + ING+C+   +          +  G+  +  VY++L+       
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELNIEVY 113
           R++E+  + ++M  QGI  ++  YN LI    + K+   +   L++ LER +   N   Y
Sbjct: 466 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLER-RLRPNAHTY 524

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK------- 166
              IDG  + G  E A +  +++   G++P V  Y  LI G CK+G + EA         
Sbjct: 525 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILS 584

Query: 167 ----------------------------LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                                       +  +++EKG  P++ ++N++I G   +   D+
Sbjct: 585 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 644

Query: 199 ASSFLKK 205
           AS  L++
Sbjct: 645 ASQLLEE 651



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 54/255 (21%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD  E R    N   Y   ++G CK +   +A +       +G+  D F+Y+ ++N  C 
Sbjct: 684 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 743

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
             + ++A++LF +M+ +G  A  V++N LI + + K G+   A  LL+ +   ++  N  
Sbjct: 744 EEKFEKALDLFQEMLEKGF-ASTVSFNTLI-EGYCKSGKLQEANHLLEEMIEKQFIPNHV 801

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSE--------------------------------- 138
            Y+ +ID  C+ G   EA++   ++ E                                 
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 139 --KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF-------NTVIQG 189
             KG+ P  +TY ++I+  C++G +MEA KL  ++  KG  P  + F       + + +G
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG-MPMKSGFRLGLPTCSVIARG 920

Query: 190 FLVKNETDRASSFLK 204
           F +    D A+  L+
Sbjct: 921 FQIAGNMDEAAEVLR 935



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 17/108 (15%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----------------GLVPGVVTYNIL 151
           ++  Y+ +I   C+VG  ++A++ L ++ EK                 GLVP + TY+IL
Sbjct: 223 DVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDIL 282

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ING C +    EA  +L++M + G  P+  ++N +I GF+ + + ++A
Sbjct: 283 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 330



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 53/210 (25%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D      +  DV+ Y+++I+  C    +K+A  +  +M   G  A L+            
Sbjct: 213 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM---GEKARLLD----------- 258

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A+ L +++       ++  Y ++I+G C   R  EA+  L ++ + GL P  +TY
Sbjct: 259 ----EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITY 314

Query: 149 NILI-----------------------------------NGLCKKGMIMEADKLLVQMKE 173
           N LI                                   NG+CK G + +A +++ +M E
Sbjct: 315 NALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 374

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG  PDS +++ +I+G        RA   L
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELL 404



 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE----------------- 173
           K  D +    ++P V TY  +I+  CK G + +A ++L++M E                 
Sbjct: 210 KVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVD 269

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG  PD  +++ +I GF ++  +  A   L
Sbjct: 270 KGLVPDLYTYDILINGFCMEKRSREAKLML 299


>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L  +  K N   Y   + G C I         +D  + +    +    +  IN LC    
Sbjct: 36  LPSRSCKPNTVNYNTVLKGFCSIERWVDANEILDEVVSENCPPNEATLNVTINTLCRKGL 95

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++     +KM   G T  +VTYN +I    E+    SA+ LL  ++    + +I  Y+ 
Sbjct: 96  LQKVTRYLEKMSKHGCTTNVVTYNAIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNT 155

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+ GLC   RWE+A + + ++S+   +    T+N +I+  C+KG+I++A ++  QM EKG
Sbjct: 156 VLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKG 215

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P+ST+++T+I G +  ++ ++A   L +
Sbjct: 216 CNPNSTTYSTIIGGLVKASKMEQALELLNE 245



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ +I+ +C    + +A EL + + ++      V YN ++      +    A  +L  +
Sbjct: 12  TYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVDANEILDEV 71

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             +    N    ++ I+ LCR G  ++  + L+++S+ G    VVTYN +I GLC++G +
Sbjct: 72  VSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNAIIGGLCEQGNV 131

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A +LL  M+  GC PD  ++NTV++G    +  + A   + K
Sbjct: 132 DSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIK 175



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M A+G     VTYN +I     +     A  LL +L     + N   Y+ V+ G C + R
Sbjct: 1   MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIER 60

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           W +A + LD++  +   P   T N+ IN LC+KG++ +  + L +M + GC  +  ++N 
Sbjct: 61  WVDANEILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNA 120

Query: 186 VIQGFLVKNETDRASSFL 203
           +I G   +   D A   L
Sbjct: 121 IIGGLCEQGNVDSALELL 138



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 41/236 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G+C+   +DSA++        G   D+  Y++++ GLC+ +R ++A EL 
Sbjct: 114 NVVTYNAIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELM 173

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM       +  T+N +I    +K     A+ + + +       N   YS +I GL + 
Sbjct: 174 IKMSQNDRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKA 233

Query: 124 GRWEEARKKLDQLSEKG----------------------------------LVPGVVTYN 149
            + E+A + L++++ KG                                  + P  V YN
Sbjct: 234 SKMEQALELLNEMANKGFNTDKMYLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYN 293

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            ++ GLC+ G    A  +L  M   GC PD +++  +I+G   +     A   L +
Sbjct: 294 TVLLGLCRNGKTNYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYLKEARELLSR 349



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           E N   Y+++ID +CR G  ++AR+ L+ L  +   P  V YN ++ G C     ++A++
Sbjct: 7   EPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVDANE 66

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +L ++  + C P+  + N  I     K    + + +L+K
Sbjct: 67  ILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEK 105



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG   +   YS++I GL   +++++A+EL ++M  +G   + +    ++  +  K+ + 
Sbjct: 213 EKGCNPNSTTYSTIIGGLVKASKMEQALELLNEMANKGFNTDKMYL--VLTKSLNKEDKI 270

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + ++  L+         +Y+ V+ GLCR G+   A   L  +   G +P   TY IL
Sbjct: 271 EEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNYAIDVLADMVSCGCMPDESTYIIL 330

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           I GL  +G + EA +LL ++    C  D      V+   L+KNE
Sbjct: 331 IEGLFYEGYLKEARELLSRL----CSRD------VLSNSLIKNE 364


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +KKG+ LDV  Y++LI+GL    R  EA E+F+ MV QG   +  TY  +I  ++ K
Sbjct: 268 DEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYG-MIVSHFCK 326

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           QG+  +A  +++ ++    E N  VY+ ++DG   V R  EA      +  K + P +VT
Sbjct: 327 QGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTMLRKMVKPSIVT 386

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRA 199
           YNIL+ GLCK G   +A  +L +M+E+ G  P   S+ T+I G       D A
Sbjct: 387 YNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEA 439



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 15  YGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           +GI +  +C+ +E+D A      +     LDV  Y++LI GL    R+  A ELF++M +
Sbjct: 42  HGIILKALCERKEVDQALSYFHSVSPRSDLDVVSYTTLIMGLADSGRIDVACELFEEMSS 101

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            G +  +V Y  +I+  ++      A+A  + +   K + ++  +++VI GLC+ G+   
Sbjct: 102 SG-SQCVVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNR 160

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A +   +++ KG  P ++ Y  L++GL K  M+ EA KLL ++  +G  P   ++ + I 
Sbjct: 161 ACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFIS 220

Query: 189 GFLVKNETDRASSFLKK 205
           G       + A   +++
Sbjct: 221 GLCKNGRVEEAGKLVRE 237



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           V  Y+++IN L   +R  +A+  F++MVA+    +L T+  +I     K G+ + A  + 
Sbjct: 107 VVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVI-TGLCKAGKLNRACEVF 165

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           Q + R  ++ +I VY+ ++DGL +    +EARK L ++  +G+ P  VTY   I+GLCK 
Sbjct: 166 QEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKN 225

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G + EA KL+   +E G    +   + +  G++++ + + A
Sbjct: 226 GRVEEAGKLV---REMGKMCAAEVLHCIFGGYVLEGKIEEA 263



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   YG+ ++  CK  ++ +A K        G+  +  VY+SL++G    NR +EA+ ++
Sbjct: 313 DTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVY 372

Query: 64  DKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
             M+ + +   +VTYN L+    +  Q   + + L +  ERD     I  Y  +I GL +
Sbjct: 373 STMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGK 432

Query: 123 VGR-----------------------------------WEEARKKLDQLSEKGLVPGVVT 147
            GR                                    +EA + L  +   G+ P  + 
Sbjct: 433 AGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALA 492

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN L+  LC    +  A  +LV+M +  C PD ++F  +  GF
Sbjct: 493 YNALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGF 535



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LDV  Y+ +I GLC   R   A EL  +M A GI    VT+  ++    E++    A++ 
Sbjct: 2   LDVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSY 61

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             ++   + +L++  Y+ +I GL   GR + A +  +++S  G    VV Y  +IN L K
Sbjct: 62  FHSVS-PRSDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSG-SQCVVAYTAIINALFK 119

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                +A     +M  + C PD  +F  VI G     + +RA    ++
Sbjct: 120 AHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQE 167



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 32/184 (17%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D+  ++ +I GLC   +L  A E+F +M  +G   +++ Y  L+    +      A  LL
Sbjct: 141 DLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLL 200

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL------------------------- 133
           Q +     +     Y+  I GLC+ GR EEA K +                         
Sbjct: 201 QEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLEGKI 260

Query: 134 -------DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
                  D++ +KG+   V  Y  LI+GL       EA ++   M  +GC PD+ ++  +
Sbjct: 261 EEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMI 320

Query: 187 IQGF 190
           +  F
Sbjct: 321 VSHF 324


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 35/178 (19%)

Query: 13  HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
           H Y  R N     R +D+   KGI  D + Y SLI+G+C   RL+EA  LFDKMV  G+ 
Sbjct: 292 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 351

Query: 73  AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
              VTYN LI                                   DG C  G  E A   
Sbjct: 352 PNAVTYNTLI-----------------------------------DGYCNKGDLERAFSY 376

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            D++ +KG++P V TYN+L++ L  +G + EAD ++ +M++KG  PD+ ++N +I G+
Sbjct: 377 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 434



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING  +      A       + KGI      Y+SLI  L   NR+KEA +LF+K+
Sbjct: 426 TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 485

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + QG++ +++ +N ++  +        A  LL+ ++R     +   ++ ++ G CR G+ 
Sbjct: 486 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 545

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEAR  LD++  +G+ P  ++YN LI+G  ++G I +A ++  +M   G  P   ++N +
Sbjct: 546 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 605

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+      E D A   LK+
Sbjct: 606 IKCLCKNQEGDLAEELLKE 624



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I   V+ ++ ++N LC   +LK+A E    M   G    +V+YN +IH    +     A 
Sbjct: 245 ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGAR 304

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
            +L  +     E +   Y  +I G+C+ GR EEA    D++ E GLVP  VTYN LI+G 
Sbjct: 305 RILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 364

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C KG +  A     +M +KG  P  +++N ++    ++     A   +K+
Sbjct: 365 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 414



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+ + +   C++R  D A K       KGI   +   + +++     NR++ A  L+ +M
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
               I++ + T+N ++ +   K+G+   A   +  +E   ++ N+  Y+ +I G    G 
Sbjct: 241 FRLRISSTVYTFNIMV-NVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 299

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            E AR+ LD +  KG+ P   TY  LI+G+CK+G + EA  L  +M E G  P++ ++NT
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 186 VIQGFLVKNETDRASSF 202
           +I G+  K + +RA S+
Sbjct: 360 LIDGYCNKGDLERAFSY 376



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V+  L+   C   R  EA + F  M  +GI  ++ T N ++    +      A  L   +
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            R +    +  ++++++ LC+ G+ ++AR+ +  +   G  P VV+YN +I+G   +G I
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A ++L  M+ KG  PDS ++ ++I G   +   + AS    K
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDK 344



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++E+D   +K +  D   +++L+ G C   +++EA  L D+M  +GI  + ++YN LI  
Sbjct: 517 LKEMD---RKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A  +   +    +   +  Y+ +I  LC+    + A + L ++  KG+ P 
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633

Query: 145 VVTYNILINGL 155
             TY  LI G+
Sbjct: 634 DSTYLSLIEGM 644



 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D   ++GI  D   Y++LI+G      +K+A  + D+M++ G    L+TYN LI    +
Sbjct: 552 LDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCK 611

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            Q    A  LL+ +       +   Y  +I+G+  V
Sbjct: 612 NQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 647


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 10/195 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++  +  K N + +   I+G+CKI  ++ A +  + L        +V  Y+ +I G C  
Sbjct: 276 EMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKE 335

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            +L  A  L  +MV QG+     TY  LIH +  K G F  A  L+  ++ + +  NI  
Sbjct: 336 GKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHC-KGGSFDRAFELMNKMKLEGFLPNIYT 394

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I G C+ G+ +EA K L   + +GL    VTY ILI   CK+G I  A  L  QM 
Sbjct: 395 YNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMA 454

Query: 173 EKGCFPDSTSFNTVI 187
           EK C PD  ++ T+I
Sbjct: 455 EKSCHPDIHTYTTII 469



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G CLD    + ++   C   R +   +LF +M   G    +V Y+  I    E+     
Sbjct: 210 QGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQ 269

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-RKKLDQLSEKGLVPGVVTYNILI 152
           A  +L+ +     + N+  ++ +IDGLC++G  E A R  L  +      P V TY ++I
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMI 329

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G CK+G +  A+ LL +M E+G  P++ ++ T+I G       DRA   + K
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNK 382



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   I+G CK    D A +       +G   +++ Y+++I G C   +
Sbjct: 348 MVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGK 407

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA ++     +QG+  + VTY  LI ++  KQG  + A+ L + +       +I  Y+
Sbjct: 408 IQEAYKVLRMATSQGLHLDKVTYTILITEHC-KQGHITCALDLFKQMAEKSCHPDIHTYT 466

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C+  + E++++  D+    GLVP   TY  +I G C+ G +  A K+  +M + 
Sbjct: 467 TIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQH 526

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           GC PDS ++  +I     ++  + A +  +
Sbjct: 527 GCLPDSITYGALISSLCKESRLEEARALFE 556



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D   + +L+ G C   R +EA  L   M AQG   +  T   ++   + +QGRF  
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVR-AFCRQGRFRN 234

Query: 95  MA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           +  L + +       N+  YS  IDGLC  G  ++A   L+++  KGL P V T+  LI+
Sbjct: 235 VTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLID 294

Query: 154 GLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK G +  A +L +++ +   + P+  ++  +I G+  + +  RA   L +
Sbjct: 295 GLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGR 347



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 59  AVELFDKMV--AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
           A E FD M   A G+  +  ++  L+     ++GRF  A ALL  +    + L+    ++
Sbjct: 163 AREAFDGMARAAGGVRPDHRSFRALVLGCC-REGRFEEADALLAAMWAQGFCLDSATCTV 221

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+   CR GR+        ++SE G  P +V Y+  I+GLC++G + +A  +L +M  KG
Sbjct: 222 VVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKG 281

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASS-FLK 204
             P+  +  ++I G       +RA   FLK
Sbjct: 282 LKPNVYTHTSLIDGLCKIGWMERAFRLFLK 311



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 10/197 (5%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I   CK   I  A+       +K    D+  Y+++I   C   +++++ +LFDK +
Sbjct: 430 YTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCL 489

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           + G+     TY  +I          SA+ + + + +     +   Y  +I  LC+  R E
Sbjct: 490 SIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLE 549

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EAR   + + +K LVP  VT   L    C++  I  A   L ++ ++     + + + ++
Sbjct: 550 EARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKR---QQAHTADALV 606

Query: 188 QGFLVKNETDRASSFLK 204
           +        D AS FLK
Sbjct: 607 RKLSTVGNLDAASLFLK 623



 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           RL+EA ++  ++ + G+   + T N ++       G F+ A      + R    +  +  
Sbjct: 123 RLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPDHR 182

Query: 114 SL--VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           S   ++ G CR GR+EEA   L  +  +G      T  +++   C++G       L  +M
Sbjct: 183 SFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRM 242

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            E G  P+  +++  I G   +    +A   L++
Sbjct: 243 SEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEE 276


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y I ING CK       ++  +  + KGI   V  Y+SLI+ L    
Sbjct: 279 EMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKG 338

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++E   LF+  V +GI  +L  YN LI+ +        A  ++  +E+ +   +   Y+
Sbjct: 339 MVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYN 398

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GLC +GR +EAR  +++++++G+ P +V+YN LI+G   KG I +A K+  +M  K
Sbjct: 399 TLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGK 458

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P   ++N +I+G  +  +   A   +K+
Sbjct: 459 GFNPTLLTYNAMIKGLCLNGQGGDAEDLVKE 489



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKGNF----HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGL 50
           + E R +G      + Y   I+G CK+ +++ A K          +  +  +Y++LI G 
Sbjct: 170 MREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGY 229

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    L+ A+    +MV +G++  + TYN  +H  + +     A AL++ +       + 
Sbjct: 230 CDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDA 289

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++I+G C+ G+ ++A K  + +  KG+   VVTY  LI+ L  KGM+ E D+L   
Sbjct: 290 FTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFND 349

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +G  PD   +N +I       + DRA
Sbjct: 350 AVRRGIRPDLFMYNALINSHCTGGDMDRA 378



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 4/185 (2%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++ + + GM +   R  + A+++GI  D+F+Y++LIN  CT   +  A E+  +M  + I
Sbjct: 331 IHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRI 390

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           T + VTYN L+       GR   A  L++ + +   + ++  Y+ +I G    G  ++A 
Sbjct: 391 TPDDVTYNTLMR-GLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAV 449

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K  D++  KG  P ++TYN +I GLC  G   +A+ L+ +M   G  PD +++ ++I+G 
Sbjct: 450 KVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509

Query: 191 LVKNE 195
             ++E
Sbjct: 510 TTEDE 514



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 9/214 (4%)

Query: 1   FD--LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC 51
           FD  LTE + + N  +Y   I G C    ++ A++       +G+ + V  Y+  ++ L 
Sbjct: 206 FDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLF 265

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R  EA  L ++M  +G+  +  TYN LI+   ++     AM + + +        + 
Sbjct: 266 MEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVV 325

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I  L   G  +E  +  +    +G+ P +  YN LIN  C  G +  A +++ +M
Sbjct: 326 TYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEM 385

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++K   PD  ++NT+++G  +    D A   +++
Sbjct: 386 EKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEE 419



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 43/193 (22%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA- 94
           + L    ++ ++  LCT  +   A+EL  +M     +   VTYN +I   +  +GR  A 
Sbjct: 112 LPLSTTTFNIMLRHLCTAGKPVRALELLRQMP----SPNAVTYNTVIA-GFCARGRVQAG 166

Query: 95  MALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILI 152
           + +++ + ER     +   Y+ VI G C+VG+ E+A K  D++  +G V P  V YN LI
Sbjct: 167 IEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALI 226

Query: 153 NGLCKKGMI-----------------------------------MEADKLLVQMKEKGCF 177
            G C +G +                                    EA  L+ +M EKG  
Sbjct: 227 GGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLA 286

Query: 178 PDSTSFNTVIQGF 190
           PD+ ++N +I G+
Sbjct: 287 PDAFTYNILINGY 299



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++ L+ ++ +  +     + +PL+           A  L   + R +  L+   +++++ 
Sbjct: 69  SLSLYSRLKSLSLPIPTASLHPLLSSLPPA----PAFVLFADIFRLRLPLSTTTFNIMLR 124

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF- 177
            LC  G+   A + L Q+      P  VTYN +I G C +G +    +++ +M+E+G   
Sbjct: 125 HLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIA 180

Query: 178 PDSTSFNTVIQGF 190
           PD  ++ TVI G+
Sbjct: 181 PDKYTYATVISGW 193


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 93/173 (53%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           + G+ +    YS +I GLC   +  E   +F+KM+ +G    +  Y  LI  N +     
Sbjct: 265 ENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMG 324

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            AM L + ++++  E ++  Y +V++ +C+ GR +EA + L+     G+    + Y+ LI
Sbjct: 325 EAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLI 384

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL K G + EA+KL  +M +KGC PDS  +N +I       +TD A +F K+
Sbjct: 385 DGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKR 437



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG+ +N MCK   +D A++        G+ ++  +YSSLI+GL    R+ EA +LF++M
Sbjct: 344 TYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEM 403

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V +G   +   YN LI D   K G+   A+A  + +E +  +  +  Y+++I+GL R  +
Sbjct: 404 VKKGCPPDSYCYNALI-DALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHK 462

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST---S 182
            EEA K  D + +KG+ P    +  L  GLC  G +  A KLL ++   G  P++     
Sbjct: 463 NEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETAFEDM 522

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
            N + +   +K     A  F+ +
Sbjct: 523 LNVLCKAGRIKEACKLADGFVDR 545



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H Y + I G+CK           +  I+KG  ++V +Y++LI+       + EA+ LF++
Sbjct: 273 HAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFER 332

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M  +G+  ++VTY  ++ +   K GR   AM  L+    +   +N  +YS +IDGL + G
Sbjct: 333 MKKEGLEPDVVTYG-VVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAG 391

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  EA K  +++ +KG  P    YN LI+ L K G   EA     +M+++GC     ++ 
Sbjct: 392 RVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYT 451

Query: 185 TVIQGFLVKNETDRA 199
            +I G   +++ + A
Sbjct: 452 IMINGLFREHKNEEA 466



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKG-ICLDVFVYSSLINGLCTFNR 55
           + E   + +   Y   +NG+     I+SA      ++ G I  DV  Y+++I G C   +
Sbjct: 158 MKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGK 217

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            ++A E F  M  + +  + +TY  LI   +  +G F   ++L   ++ +  E+    YS
Sbjct: 218 TQKAFEKFRDMELRNVAPDKITYMTLIQACY-AEGDFDLCLSLYHEMDENGLEIPPHAYS 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           LVI GLC+ G+  E     +++ +KG    V  Y  LI+   K G + EA  L  +MK++
Sbjct: 277 LVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKE 336

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  PD  ++  V+         D A  +L+
Sbjct: 337 GLEPDVVTYGVVVNCMCKSGRLDEAMEYLE 366



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 23  CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           CK R +      G  ++V   +SLI    +   ++E + ++  M   G+   L TYN L+
Sbjct: 121 CKFRGM------GFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLL 174

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           +         SA  +L+ +E  K   ++  Y+ +I G C+VG+ ++A +K   +  + + 
Sbjct: 175 NGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVA 234

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P  +TY  LI     +G       L  +M E G      +++ VI G 
Sbjct: 235 PDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGL 282



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           +N+   + +I     +G  EE       + E G+ P + TYN L+NGL     I  A+++
Sbjct: 130 MNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERV 189

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M+     PD  ++NT+I+G+    +T +A
Sbjct: 190 LEVMENGKIGPDVVTYNTMIKGYCQVGKTQKA 221



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I+ + K  + D A+        +G    V+ Y+ +INGL   ++ +EA++++D 
Sbjct: 413 YCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDM 472

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ +GIT     +  L            A  LL  L      +    +  +++ LC+ GR
Sbjct: 473 MIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGV-IPETAFEDMLNVLCKAGR 531

Query: 126 WEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEADKLL 168
            +EA K  D   ++G  +PG V   +LIN L K G    A KL+
Sbjct: 532 IKEACKLADGFVDRGREIPGRVR-TVLINALRKAGNADLALKLM 574


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 110/203 (54%), Gaps = 9/203 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L ++  +     YG  ING+CK+ + +SA+       +  I   V +Y+++I+ LC    
Sbjct: 32  LVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGH 91

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A  LF +M  +GI  +++TY+ +I D++ + GR++ A  LL+ +   +   ++  +S
Sbjct: 92  HIHAQNLFTEMHDKGIFPDVITYSGMI-DSFCRSGRWTDAEQLLRDMIERQINPDVVTFS 150

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+ L + G+  EA +    +  +G+ P  +TYN +I+G CK+  + +A ++L  M  K
Sbjct: 151 ALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASK 210

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
            C PD  +F+T+I G+      D
Sbjct: 211 SCSPDVVTFSTLINGYCKAKRVD 233



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G   DV  +++L+NGLC   R+ +A+ L D+MV +G       Y  +I+   +    
Sbjct: 2   VETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDT 57

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA+ LL  +E    + ++ +Y+ +ID LC+ G    A+    ++ +KG+ P V+TY+ +
Sbjct: 58  ESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           I+  C+ G   +A++LL  M E+   PD  +F+ +I   + + +   A
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I++ I  DV  +S+LIN L    ++ EA E++  M+ +GI    +TYN +I D + KQ R
Sbjct: 138 IERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMI-DGFCKQDR 196

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + A  +L ++       ++  +S +I+G C+  R +   +   ++  +G+V   VTY  
Sbjct: 197 LNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LI+G C+ G +  A  LL  M   G  P+  +F +++     K E  +A + L+
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILE 310



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ E++   +   +   IN + K  ++  A       +++GI      Y+S+I+G C  +
Sbjct: 136 DMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQD 195

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL +A  + D M ++  + ++VT++ LI+   + +   + M +   + R     N   Y+
Sbjct: 196 RLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYT 255

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+VG  + A+  L+ +   G+ P  +T+  ++  LC K  + +A  +L  +++ 
Sbjct: 256 TLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKS 315

Query: 175 GCFP 178
              P
Sbjct: 316 EVCP 319


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 23  CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           C +RE       G+ +D +  ++L+ G C  + L++A  L   M   G      +Y  LI
Sbjct: 203 CLLRE------SGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILI 256

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
              +E +    A+ L+  + +D   LN+ +Y+L+I GLC+ GR  +AR  LD++  +G+V
Sbjct: 257 QGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVV 316

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V TYN +I+G CK G + +A  +   M++ GC PD  ++N++I G L   + D A   
Sbjct: 317 PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYG-LCGGKLDEAEEL 375

Query: 203 L 203
           L
Sbjct: 376 L 376



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 107/199 (53%), Gaps = 8/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +  A+       + G   D + Y+SLI GLC   +L EA EL +  
Sbjct: 321 TYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGA 379

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A+G T  ++T+  LI+   + +    A+ +   +     +L+++ Y ++I+ L +  R 
Sbjct: 380 IARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRL 439

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA++ L+++   GL P VV Y  +I+G CK GM+  A ++   M+ +GC P++ ++ ++
Sbjct: 440 KEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSL 499

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G +   +  +A + + K
Sbjct: 500 IYGLIQDKKLHKAMALITK 518



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 4/197 (2%)

Query: 13  HVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
             Y +  + +CK    + A    ++KG+ L    Y+SL++G         A  L +KMV 
Sbjct: 564 QAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVN 623

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G  A+L TY+ L+    +++    A+++L  +     + NI  Y+++I  + + G+ + 
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A+   +++   G  P   TY + I+  CK G I EA+ L+ +M+  G  PD  +++  I 
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFIN 743

Query: 189 GFLVKNETDRASSFLKK 205
           G       DRA S LK+
Sbjct: 744 GCGHMGYMDRAFSTLKR 760



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 9   KGNFHVYGIRINGM---CKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   YG+ IN +   C+++E    ++     G+  +V +Y+S+I+G C    +  A+E
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALE 479

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F  M  +G      TY  LI+   + +    AMAL+  ++ D     +  Y+ +I G C
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQC 539

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           +   ++ A +  + + + GL P    YN+L + LCK G   EA   LV+   KG      
Sbjct: 540 KKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR---KGVVLTKV 596

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++ +++ GF     TD A+  ++K
Sbjct: 597 TYTSLVDGFSKAGNTDFAAVLIEK 620



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  + +G   D++ YS L+  LC   +L EA+ + D+M   G+   +V Y  +I +  +
Sbjct: 618 IEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIK 677

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A +L   +    ++ +   Y++ I   C++G+ EEA   + ++   G+ P VVT
Sbjct: 678 EGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVT 737

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           Y+I ING    G +  A   L +M +  C P+  ++  +++ FL
Sbjct: 738 YHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 23/225 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++     K +   Y + I+  CKI +I+ A        + G+  DV  Y   ING     
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMG 749

Query: 55  RLKEAVELFDKMVAQGITAELVTY---------NPLIHDNW-EKQGRFSAMAL---LQTL 101
            +  A     +MV         TY           LI+ ++ +  G ++ + L    Q L
Sbjct: 750 YMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLL 809

Query: 102 ERD-KYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ER  K+ LN  V  YS +I G C+  R EEA   LD +  K + P    Y +LI   C  
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDI 869

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +  +    +  M E G  P   S++ +I G   + + DRA S  
Sbjct: 870 KLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLF 914



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  +K G+   V  YSS+I G C   RL+EA  L D M+ + I+     Y  LI    +
Sbjct: 809 LERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCD 868

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +     ++ +  +    ++  +E Y  +I GLC  G ++ A+     L         V 
Sbjct: 869 IKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVA 928

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + IL +GL K G +    +LL  M  + C  DS S++
Sbjct: 929 WKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYS 965



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           L+ + Y+L +  L R    E   K    L ++GL+P  VTYN +I   CKKG +  A + 
Sbjct: 142 LSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRY 201

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              ++E G   D+ + N ++ G+   ++  +A   L
Sbjct: 202 FCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLL 237



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 42/208 (20%)

Query: 25  IREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           +RE   AI+       K + L    Y+  +  L  F+  +   +L+  +V +G+  + VT
Sbjct: 122 VREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVT 181

Query: 78  YNPLIHDNWEKQG-----RFSAMALLQTLERDKYELNIEV-------------------- 112
           YN +I    +K       R+  +     ++ D Y  N  +                    
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMP 241

Query: 113 ----------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                     Y+++I GL       EA   +  + + G    +  Y +LI GLCK+G I 
Sbjct: 242 LMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIH 301

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +A  LL +M  +G  P   ++N +I G+
Sbjct: 302 DARGLLDEMPLRGVVPSVWTYNAMIDGY 329



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE------KGLVPGVV 146
           S  ALLQ L R +   N +   LV+  +   G  E+ R+ +D +        K LV    
Sbjct: 88  SHAALLQLLARRRAPANYD--KLVLSMISCSGTAEDVREAVDAIQAIRRVGGKRLVLSPK 145

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            YN+ +  L +  M     KL   + ++G  PD+ ++NT+I  +  K     A  + 
Sbjct: 146 CYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYF 202


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 112/202 (55%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  ++D A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 192 DVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 251

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q ++ +L+TYN LI+   +K     A  L+  +   + + +   Y+ +IDG C+ 
Sbjct: 252 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKE 311

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A +   ++ ++ +    V Y  LI+GLC++G  ++A+K+L +M   G  PDS ++
Sbjct: 312 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTY 371

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +  + S  LK+
Sbjct: 372 TMIINEFCKKGDVWKGSKLLKE 393



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+   V  Y++L+NG     
Sbjct: 113 EILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 172

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 173 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFT 232

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L P ++TYN LI GLCKKG + +A  L+ +M  K
Sbjct: 233 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 292

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++ T+I G   + + D A    K+
Sbjct: 293 ELKPDKITYTTLIDGCCKEGDLDSAFEHRKR 323



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +             T   ++    + +         
Sbjct: 52  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 111

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV+YN L+NG  + 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 171

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G + E  +L   M   G  PD  +++ +I G   +++ D A+   
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELF 216



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITAELV-----------TYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A +V            ++ LI  
Sbjct: 3   YCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLITA 62

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V++ L ++  ++      +++ E G    
Sbjct: 63  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 122

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK G I  A  +   + + G  P   S+NT++ G++   + D  
Sbjct: 123 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 177


>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A  LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIXLLHR 77


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +T+  F  +   YGI ++G CK       +R +  A +KG  LD F YS++INGLC   +
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L EAV + + M+  G T     YN LI+          A+ + + +        +  Y+ 
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+  R+ EA   + ++ EKG  P V+TY++L+ GLC+   +  A +L  Q+   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD    N +I G     +T  A
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLA 288



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK  ++D A       IK G   +  VY++LING    ++  +A+ +F +M
Sbjct: 131 AYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREM 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +   +  +VTYN LI+   + +    A  L++ +    ++  +  YSL++ GLC+  + 
Sbjct: 191 GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKV 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q+   GL P V   NILI+GLC  G    A  L   M    C P+  + NT+
Sbjct: 251 EMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTL 310

Query: 187 IQGF 190
           ++GF
Sbjct: 311 MEGF 314



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N HVY   ING   + + D AI+             V  Y++LINGLC   R  EA +L 
Sbjct: 163 NAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLV 222

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ +G    ++TY+ L+    +      A+ L   +  +  + ++++ +++I GLC V
Sbjct: 223 KEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSV 282

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A      ++     P +VT+N L+ G  K G I  A  +  ++   G  PD  S+
Sbjct: 283 GKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSY 342

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N  ++G    +    A  FL+
Sbjct: 343 NITLKGLCSCSRISFAILFLQ 363



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 96/184 (52%), Gaps = 8/184 (4%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+  +ID A        +  +  D  VY++++NG     R+K+ +EL++ M  +  +  +
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGRED-SQNV 59

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           V++N ++   +       A+++ + + +  +  +   Y +++DG C+ G   ++ + L  
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGI 119

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
             EKG V     Y+ +INGLCK+  + EA  +L  M + G  P++  +NT+I GF+  ++
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSK 179

Query: 196 TDRA 199
            D A
Sbjct: 180 FDDA 183



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    +  A  ++ +M    ++ + V YN ++ + + + GR      L  L   +   N+
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAML-NGFFRAGRIKDCIELWELMGREDSQNV 59

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +++++ GL   G  ++A    + +++ G V    TY IL++G CK G I ++ ++L  
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGI 119

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +EKG   D+ +++ +I G   + + D A S L
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVL 152



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ +K     Y + + G+C+  +++ A       I  G+  DV + + LI+GLC+  
Sbjct: 224 EMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A+ L+  M        LVT+N L+   ++     +A+ +   + R+  + +I  Y+
Sbjct: 284 KTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           + + GLC   R   A   L     K + P
Sbjct: 344 ITLKGLCSCSRISFAILFLQDALAKKIAP 372


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 105/197 (53%), Gaps = 9/197 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  ++ +C++ ++D A       I +G+  +  V+ +LI+GLC  ++
Sbjct: 372 MRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDK 431

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A EL  +M+ +GI    + +N L+ ++  K+G  + A  +   + R   + ++  Y+
Sbjct: 432 WDKAEELAVEMIGRGICPNTIFFNTLL-NHLCKEGMVTRAKNIFDLMVRVDVQCDVITYT 490

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C  G+ +EA K L+ +   G+ P  VTYN +ING CK G I +A  L  QM  K
Sbjct: 491 TLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASK 550

Query: 175 GCFPDSTSFNTVIQGFL 191
           G  P    ++T++ G  
Sbjct: 551 GVNPGIVIYSTILHGLF 567



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-----------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           N   Y I + G+C       A+           + G   DV  Y+++INGL    +L +A
Sbjct: 166 NAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKA 225

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             LFD+M+ QG++   +TYN L+H          A+ + + + RD  E ++  Y+ ++  
Sbjct: 226 YCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVY 285

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+ GR  EARK  D + +KG  P    Y  L++G   +G +++  +LL  M   G  PD
Sbjct: 286 LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD 345

Query: 180 STSFNTVIQGFLVKNETDRA 199
              FN +I  +      D A
Sbjct: 346 HYIFNILIGAYAKHGMVDEA 365



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS +KKG   D  +Y +L++G  T   L +  +L D MV  G   +   +N LI   + K
Sbjct: 300 DSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILI-GAYAK 358

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            G    AM     + +     NI  Y  V+D LCRVG+ ++A  + D+L  +GL P  V 
Sbjct: 359 HGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVV 418

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  LI+GLC      +A++L V+M  +G  P++  FNT++     +    RA
Sbjct: 419 FRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRA 470



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   ING CK   I+ A         KG+   + +YS++++GL    R+  A E
Sbjct: 518 KPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKE 577

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L+  M+  GI   + TYN ++    +      A+ +   L    + L    ++++ID L 
Sbjct: 578 LYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALL 637

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR +EA+     L  +GLVP VVTY +++  L ++G++ E D L + +++ GC  DS 
Sbjct: 638 KGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSR 697

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
             N ++     K E  +A  +L K
Sbjct: 698 MLNALVGKLPQKGEVRKAGVYLSK 721



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 19  INGMCKIRE----IDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ- 69
           + G+C  +     +D A+++    G   + F Y+ L+ GLC  NR ++A+ L   M+A  
Sbjct: 138 LKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADD 197

Query: 70  ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G   ++V+Y  +I+    +     A  L   +       N   Y+ ++ G C  G+ 
Sbjct: 198 TRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKP 257

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA     ++   G+ P VVTYN L+  LCK G  MEA K+   M +KG  PDS+ + T+
Sbjct: 258 KEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTL 317

Query: 187 IQGF 190
           + G+
Sbjct: 318 LHGY 321



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 17/207 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +++ I I    K   +D A+       ++G+  ++  Y ++++ LC   ++ +A+  F
Sbjct: 345 DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQF 404

Query: 64  DKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           D+++++G+T   V +  LIH     D W+K    +   + + +       N   ++ +++
Sbjct: 405 DRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICP-----NTIFFNTLLN 459

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ G    A+   D +    +   V+TY  LI+G C  G + EA KLL  M   G  P
Sbjct: 460 HLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKP 519

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  ++NT+I G+      + A S  ++
Sbjct: 520 NEVTYNTIINGYCKNGRIEDACSLFRQ 546



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+ +  ++D A       + +G+  +   Y+ L++G C+  + KEA+ +F KM 
Sbjct: 209 YTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMC 268

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+  ++VTYN L+    +      A  +  ++ +  ++ +  +Y  ++ G    G   
Sbjct: 269 RDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLV 328

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +  + LD +   G  P    +NILI    K GM+ EA     +M+++G  P+  ++ TV+
Sbjct: 329 QMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVM 388

Query: 188 QGFLVKNETDRASS 201
                  + D A S
Sbjct: 389 DALCRVGKVDDAMS 402



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 1   FD-LTEQRFKGNFHVYGIRING------MCKIREI-DSAIKKGICLDVFVYSSLINGLCT 52
           FD + ++  K +  +YG  ++G      + ++ ++ D  ++ G   D ++++ LI     
Sbjct: 299 FDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAK 358

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              + EA+  F KM  QG+   +VTY  ++ D   + G+   AM+    L  +    N  
Sbjct: 359 HGMVDEAMLAFSKMRQQGLHPNIVTYGTVM-DALCRVGKVDDAMSQFDRLISEGLTPNGV 417

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           V+  +I GLC   +W++A +   ++  +G+ P  + +N L+N LCK+GM+  A  +   M
Sbjct: 418 VFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLM 477

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
                  D  ++ T+I G+ +  + D A+  L+
Sbjct: 478 VRVDVQCDVITYTTLIDGYCLDGKVDEATKLLE 510



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 53/247 (21%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD L  +    N  V+   I+G+C   + D A       I +GIC +   +++L+N LC 
Sbjct: 404 FDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCK 463

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              +  A  +FD MV   +  +++TY  LI D +   G+   A  LL+ +  D  + N  
Sbjct: 464 EGMVTRAKNIFDLMVRVDVQCDVITYTTLI-DGYCLDGKVDEATKLLEGMVLDGVKPNEV 522

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV------------------------- 146
            Y+ +I+G C+ GR E+A     Q++ KG+ PG+V                         
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWM 582

Query: 147 ----------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLV 192
                     TYNI++ GLC+     +A    ++M    C  D    + +FN +I   L 
Sbjct: 583 IKCGIKLPIGTYNIILQGLCQNNCTDDA----LRMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 193 KNETDRA 199
               D A
Sbjct: 639 GGRHDEA 645



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 5/172 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL- 97
           D+  YS +I        L  A     +++  G TA+ +T++PL+      +    AM + 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL----SEKGLVPGVVTYNILIN 153
           L+ +       N   Y++++ GLC   R ++A   L  +    +  G  P VV+Y  +IN
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GL ++G + +A  L  +M ++G  P+  ++N ++ G+    +   A    +K
Sbjct: 215 GLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRK 266



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
            A  LFD+++ +  T+     + L      ++    A++L   + R     ++  YS+VI
Sbjct: 50  HAHHLFDELLRRDTTSIFDLNSAL--SAVARESPAVALSLFNRMPR----ADLCTYSIVI 103

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMKEKGC 176
               R G  + A   L ++   G     +T++ L+ GLC      +A D  L +M   GC
Sbjct: 104 GCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGC 163

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            P++ S+N +++G   +N + +A   L   M
Sbjct: 164 TPNAFSYNILLKGLCDENRSQQALHLLHTMM 194


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  ++D A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 194 DVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIY 253

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q ++ +L+TYN LI+   +K     A  L+  +     + +   Y+ +IDG C+ 
Sbjct: 254 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKE 313

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A +   ++ ++ +    V Y  LI+GLC++G  ++A+K+L +M   G  PD+ ++
Sbjct: 314 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTY 373

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +    S  LK+
Sbjct: 374 TMIINEFCKKGDVWTGSKLLKE 395



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 9/179 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A++       + +  D+  Y++LI GLC    LK+A +L D+M  +G+
Sbjct: 237 IDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGL 296

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +TY  LI D   K+G   +A    + + ++   L+   Y+ +I GLC+ GR+ +A 
Sbjct: 297 KPDKITYTTLI-DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAE 355

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           K L ++   GL P   TY ++IN  CKKG +    KLL +M+  G  P   ++N ++ G
Sbjct: 356 KVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 86/169 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    ++ ++ L++  C    ++ A  +F+ +   G+   +V++N L++           
Sbjct: 120 GYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 179

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L   +     + ++  YS++I+GLC+  + ++A +  D++ +KGLVP  VT+  LI+G
Sbjct: 180 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 239

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            CK G +  A ++  QM  +   PD  ++NT+I G   K +  +A   +
Sbjct: 240 HCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLI 288



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 74/144 (51%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            +++++  G  A L  +N L+H   ++     A ++   + +     ++  ++ +++G  
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYI 171

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R+G  +E  +    +   G+ P V TY++LINGLCK+  + +A++L  +M +KG  P+  
Sbjct: 172 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 231

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +F T+I G       D A    K+
Sbjct: 232 TFTTLIDGHCKSGRVDLAMEIYKQ 255


>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 42/196 (21%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I+ +C  + +  A +       +G   D F+Y++++ G C  +R  EA+E++
Sbjct: 236 NLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVY 295

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G+  +L+TYN LI                                    GL + 
Sbjct: 296 NRMKEKGVEPDLITYNTLIF-----------------------------------GLSKS 320

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  EA+K L  ++EKG  P  VTY  L+NG+C+KG  + A  LL +M+ KGC P++ ++
Sbjct: 321 GRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTY 380

Query: 184 NTVIQGFLVKNETDRA 199
           NT++ G       D+A
Sbjct: 381 NTLLHGLCKSRMFDKA 396



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 4   TEQRFKGNFHVYGIRINGMCKIRE------------IDSAIKKGICLDVFVYSSLINGLC 51
           T   F  +   Y I +   CK  +            ++  +  GI  D       +  LC
Sbjct: 131 THPSFSPDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLC 190

Query: 52  TFNRLKEAVELFDKMVAQGITAE-----------------------LVTYNPLIHDNWEK 88
           T +R+ +AVEL  ++ ++  + +                       LVTY  LI +    
Sbjct: 191 TADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYPNLVTYTILIDNVCNT 250

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A  L+  LE + ++ +  +Y+ ++ G C + R  EA +  +++ EKG+ P ++TY
Sbjct: 251 KNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITY 310

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N LI GL K G + EA KLL  M EKG FPD  ++ +++ G   K ET  A + L++
Sbjct: 311 NTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEE 367



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 7/191 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L E+ FK +  +Y   + G C +     AI+       KG+  D+  Y++LI GL    R
Sbjct: 263 LEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGR 322

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA +L   M  +G   + VTY  L++    K    +A+ALL+ +E      N   Y+ 
Sbjct: 323 VSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNT 382

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC+   +++A +    +   GL   + +Y   +  LC  G + +A ++     E  
Sbjct: 383 LLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESK 442

Query: 176 CFPDSTSFNTV 186
              D  +++T+
Sbjct: 443 SLSDVAAYSTL 453


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E + +G F     + + I+ +CK  ++  A K       KG   +   Y+SL++GLC 
Sbjct: 58  LDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL 117

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIE 111
             +L +A+ L ++MVA       +T+  L+ D + K GR    + +L +LE   Y  N  
Sbjct: 118 KGKLDKAMSLLNRMVANKCVPNDITFGTLV-DGFVKHGRALDGVRVLVSLEEKGYRGNEF 176

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            YS +I GL + G+ E   +   ++ EKG  P  + Y+ LI+GLC++G   EA + L++M
Sbjct: 177 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 236

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           K KG  P+S ++++++ G+    +  +A
Sbjct: 237 KNKGHTPNSFTYSSLMWGYFEAGDIHKA 264



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++++    + + Y   ++G+C    ID A+        +G   +   ++ LI+ LC    
Sbjct: 26  MSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGD 85

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A +L D M  +G     VTYN L+H    K     AM+LL  +  +K   N   +  
Sbjct: 86  LSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGT 145

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG  + GR  +  + L  L EKG      +Y+ LI+GL K+G      +L  +M EKG
Sbjct: 146 LVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKG 205

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
           C P++  ++ +I G   + + D A  +L
Sbjct: 206 CKPNTIVYSALIDGLCREGKPDEAKEYL 233



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E+ ++GN   Y   I+G+ K       ++     ++KG   +  VYS+LI+GLC   +
Sbjct: 166 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 225

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA E   +M  +G T    TY+ L+   +E      A+ + + +  +    +   YS+
Sbjct: 226 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 285

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +I+GLC+ G+ +EA     Q+  +G+   VV Y+ +I+G C   ++ +  KL  QM    
Sbjct: 286 LINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHN 345

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N ++  F  KN   RA   L
Sbjct: 346 PKLQPDVVTYNILLNAFCTKNSVSRAIDIL 375



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 2/148 (1%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLER 103
            ++  LC    + +AVE+F  M  +   A+  TY+ L+H     +GR   A++LL  ++ 
Sbjct: 5   PIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMH-GLCNEGRIDEAVSLLDEMQV 63

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
           +    N   ++++I  LC+ G    A K +D +  KG VP  VTYN L++GLC KG + +
Sbjct: 64  EGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDK 123

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           A  LL +M    C P+  +F T++ GF+
Sbjct: 124 AMSLLNRMVANKCVPNDITFGTLVDGFV 151



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 21  GMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
            +C++  +D A++       +    D + YS+L++GLC   R+ EAV L D+M  +G   
Sbjct: 9   ALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFP 68

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
             V +N LI    +K     A  L+  +       N   Y+ ++ GLC  G+ ++A   L
Sbjct: 69  NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 128

Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           +++     VP  +T+  L++G  K G  ++  ++LV ++EKG   +  S++++I G   +
Sbjct: 129 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 188

Query: 194 NETDRASSFLKK 205
            + +      K+
Sbjct: 189 GKGEHGMQLWKE 200



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+  K N  VY   I+G+C+  + D A +       KG   + F YSSL+ G     
Sbjct: 200 EMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAG 259

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            + +A+ ++ +M         V Y+ LI +   K G+   A+ + + +     +L++  Y
Sbjct: 260 DIHKAILVWKEMTDNDCNHHEVCYSILI-NGLCKNGKLKEALIVWKQMLSRGIKLDVVAY 318

Query: 114 SLVIDGLCRVGRWEEARKKLDQL--SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           S +I G C     E+  K  +Q+      L P VVTYNIL+N  C K  +  A  +L  M
Sbjct: 319 SSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTM 378

Query: 172 KEKGCFPD 179
            ++GC PD
Sbjct: 379 LDQGCDPD 386



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++  LCRVG  ++A +    +S++  V    TY+ L++GLC +G I EA  LL +M+ +G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
            FP+  +FN +I     K +  RAS  +
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLV 93



 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 30/174 (17%)

Query: 14  VYGIRINGMCKIREIDSAIK---KGIC------LDVFVYSSLINGLCTFNRLKEAVELFD 64
            Y   I+G C  + ++  +K   + +C       DV  Y+ L+N  CT N +  A+++ +
Sbjct: 317 AYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILN 376

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE--RDKYELNIEVYSLVIDGLCR 122
            M+ QG   + +T +                  L+TL    D  +   E    ++  L +
Sbjct: 377 TMLDQGCDPDFITCD----------------IFLKTLRDNMDPPQDGREFLDELVVRLIK 420

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
             R   A   ++ + +K L+P   T+ + +  LCK    M+  K + + + + C
Sbjct: 421 RQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKP---MKVRKTISECQSRMC 471


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G+CK R+++ A       I++G+  +V+ Y +LI+G C    ++ A   F +M+
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEML 578

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI    V    LI D + K+G  + A ++ + +       ++  YS +I GL R G+ 
Sbjct: 579 GCGIAPNDVVCTALI-DGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKL 637

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L +  EKGLVP V TYN +I+G CK+G I +A +L   M +KG  P+  ++N +
Sbjct: 638 QGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697

Query: 187 IQGFLVKNETDRA 199
           I G     E +RA
Sbjct: 698 INGLCKAGEIERA 710



 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 42/244 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIRE--------------------------IDSAIKKG 35
           ++ E+  K N + YG  I+G CK  E                          ID   K+G
Sbjct: 541 EMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEG 600

Query: 36  ----------------ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
                           +  DV  YS+LI+GL    +L+ A+EL  + + +G+  ++ TYN
Sbjct: 601 STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYN 660

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            +I    ++ G   A  L + + +     NI  Y+ +I+GLC+ G  E AR+  D +  K
Sbjct: 661 SIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK 720

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL    VTY  +I+G CK G + +A +L  +M  KG  PDS  ++ +I G   +  T++A
Sbjct: 721 GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 200 SSFL 203
            S  
Sbjct: 781 LSLF 784



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++    N   Y   ING+CK  EI+ A +       KG+  +   Y+++I+G C    
Sbjct: 682 MCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGN 741

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A  LFD+M  +G+  +   Y+ LI D   K+G       L      K   +    + 
Sbjct: 742 LSKAFRLFDEMTLKGVPPDSFVYSALI-DGCRKEGNTEKALSLFLESVQKGFASTSSLNA 800

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++DG C+ G+  EA + L+ + +K + P  VTY ILI+  CK G + EA++  V M+++ 
Sbjct: 801 LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRN 860

Query: 176 CFPDSTSFNTVIQGF 190
             P++ ++  ++ G+
Sbjct: 861 LMPNALTYTALLSGY 875



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 3/183 (1%)

Query: 24  KIREIDSAIKKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           +++++ S +KK  +    +    +INGLC    +++A  +F+ MV+ G+    V Y  LI
Sbjct: 429 RVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLI 488

Query: 83  HDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
             + + +GRF  A+ +L+ +++   + ++  Y+ VI GLC+  + EEA+  L ++ E+GL
Sbjct: 489 KGHVQ-EGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P V TY  LI+G CK G +  AD+   +M   G  P+      +I G+  +  T  A+S
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607

Query: 202 FLK 204
             +
Sbjct: 608 IFR 610



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 92/178 (51%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  +  + +G+ L++F Y++L+ G+C F  +++A  L ++M+  GI  +  TYN +I   
Sbjct: 362 RVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGY 421

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            ++Q       LL  +++           ++I+GLCR G  E+A +  + +   G+ P  
Sbjct: 422 LKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNA 481

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           V Y  LI G  ++G   EA ++L  M +KG  PD   +N+VI G     + + A  +L
Sbjct: 482 VIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYL 539



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F++ E+    +   Y + I G+C+  E+D A        KKG+  DVF YS LI+G    
Sbjct: 260 FEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQ 319

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG-RFSAMALLQTLERDKYELNIEV 112
            R  EA  + ++M ++G+    V Y  LI D + +QG    A  + + +     +LN+  
Sbjct: 320 KRCTEAKLMLEEMFSKGLKPGHVAYTALI-DGFMRQGDSGEAFRVKEEMLARGVKLNLFT 378

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++ G+C+ G  E+A   L+++   G+ P   TYN +I G  K+        LL +MK
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +    P + +   +I G       + AS
Sbjct: 439 KSNLVPTAYTCGMIINGLCRHGSIEDAS 466



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    +  Y+ +I GLC    + EA EL   M  +G+ A++ TY+ LI D + KQ R 
Sbjct: 264 EKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILI-DGFGKQKRC 322

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + A  +L+ +     +     Y+ +IDG  R G   EA +  +++  +G+   + TYN L
Sbjct: 323 TEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNAL 382

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + G+CK G + +AD LL +M   G  PD+ ++N +I+G+L +  T R    L +
Sbjct: 383 VKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSE 436



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           V+ + I+G  K    D A+       + G  + +   + L++ L   N+L+     ++ M
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGM 227

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +   +  ++ TY  LI+ ++          LL  +E      ++  Y++VI GLCR G  
Sbjct: 228 LEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEV 287

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA +    + +KGLV  V TY+ILI+G  K+    EA  +L +M  KG  P   ++  +
Sbjct: 288 DEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTAL 347

Query: 187 IQGFLVKNETDRA 199
           I GF+ + ++  A
Sbjct: 348 IDGFMRQGDSGEA 360



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
            D+ ++  K +   Y I I+  CK   +  A        K+ +  +   Y++L++G     
Sbjct: 820  DMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAG 879

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            R  E   LFD+M+A+ I  + VT++ +I  + ++      + L+  + +    ++  V  
Sbjct: 880  RRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH 939

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ID LCR     E  K L+++ E+GL   + T + L+    K G +  A ++L  M   
Sbjct: 940  VLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRF 999

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               PDST  N +I       +++ A  FLK+
Sbjct: 1000 KWVPDSTELNDLINVEQDSTDSENAGDFLKQ 1030



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK  ++  A       + K +  D   Y+ LI+  C    LKEA + F  M  + +
Sbjct: 802 MDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNL 861

Query: 72  TAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               +TY  L+   +   GR S M AL   +     E +   +S++ID   + G   +  
Sbjct: 862 MPNALTYTALL-SGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTL 920

Query: 131 KKLDQLSEKGLVPGVVTYN---ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           K +D + +KG   G V+ N   +LI+ LC+K  + E  K+L +++E+G      + +T++
Sbjct: 921 KLVDDMLKKG---GNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLV 977

Query: 188 QGFLVKNETDRASSFLK 204
           + F    + D A+  LK
Sbjct: 978 RCFHKAGKMDGAARVLK 994


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 19/222 (8%)

Query: 1   FDLTEQRFKGNFH--------VYGIRINGMCKIREIDSAIKKGIC---------LDVFVY 43
           F L    F G  H        VY   I   C++R +D A  KG+          +    Y
Sbjct: 178 FALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLDGA--KGLVARMQDEGDKVSAVPY 235

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           + LI GLC   R++EAV++ + M+A+G+ A+ VT   L++     +    A+ +   + R
Sbjct: 236 NVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMAR 295

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             +  +    S ++DGL + GR EEA +   QL E  +VP +  YN L+N +CK GM  E
Sbjct: 296 LGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSE 355

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           AD+L+ +M +KG  P+  ++  +I     +   D A   L +
Sbjct: 356 ADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDR 397



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++++  + N   Y I I+ +CK   +D A+       +KG+ + V+ Y+SLIN  C  +
Sbjct: 362 EMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKD 421

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A+    +MV  G+T    +Y+P+I     K     A+ L + +       N   ++
Sbjct: 422 DLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFT 481

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+G C+  + +EA +  ++++E  L P  VT+N +I G C  G I +A +L  QM  +
Sbjct: 482 ALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCR 541

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD+ ++ ++I G  + +   +A  F+
Sbjct: 542 GLTPDNYTYRSLISGLCLTDGASKAKEFV 570



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E R   N   Y   +N MCK        R ++    KG+  +   Y+ LI+ LC    
Sbjct: 328 LGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGM 387

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+ + D+M  +G+   +  YN LI+   +K     AM  L  +       N   YS 
Sbjct: 388 MDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSP 447

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI GLCR G    A +   +++EKG+     T+  LING CK   + EA +L  +M E  
Sbjct: 448 VIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESN 507

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  +FN VI+G+ +  +  +A
Sbjct: 508 LEPNEVTFNAVIEGYCLVGDIRKA 531



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++F Y++L+N +C      EA  L ++M  +G+    VTY  LIH   ++     A+ +L
Sbjct: 336 NIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCML 395

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +      + +  Y+ +I+  C+    + A   L ++ E GL P   +Y+ +I GLC+K
Sbjct: 396 DRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRK 455

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A +L  +M EKG   ++ +F  +I GF    + D AS    K
Sbjct: 456 GDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNK 502



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G   +   Y++L+N LC    L  A  L  +M+A        T+N  + D +  
Sbjct: 676 DEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFL-DYFAT 734

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +G       L       +  NI   + +I G C+VG+ +EA   + + +E G  P  ++Y
Sbjct: 735 EGNLETAKDLYFAMLQGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISY 794

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           + +I+ LCKKG I EA +L  +M  KG  PD  ++N +I+   +  E+D+
Sbjct: 795 STVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDK 844



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  +   + Y   IN  CK  ++D A       ++ G+  +   YS +I GLC    
Sbjct: 398 MREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGD 457

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  AVEL  KM  +G+     T+  LI+   + +    A  L   +     E N   ++ 
Sbjct: 458 LSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNA 517

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+G C VG   +A +  DQ+  +GL P   TY  LI+GLC      +A + +  ++   
Sbjct: 518 VIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNC 577

Query: 176 CFPDSTSFNTVIQGF 190
              +  S   ++ GF
Sbjct: 578 SVLNKFSLTALLHGF 592



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           + G C+  E+D A+       + G        S +++GL    R++EA  L  ++    +
Sbjct: 274 VYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRM 333

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +  YN L+ +N  K G FS A  L+  +     E N   Y+++I  LC+ G  ++A 
Sbjct: 334 VPNIFAYNALL-NNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDAL 392

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             LD++ EKG+   V  YN LIN  CKK  +  A   L +M E G  P++ S++ VI G 
Sbjct: 393 CMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGL 452

Query: 191 LVKNETDRASSFLKK 205
             K +   A    +K
Sbjct: 453 CRKGDLSGAVELHRK 467



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 93/195 (47%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    N + +   ING CK +++D A        +  +  +   ++++I G C    
Sbjct: 468 MAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGD 527

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A +L+D+M+ +G+T +  TY  LI       G   A   +  LE +   LN    + 
Sbjct: 528 IRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTA 587

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G CR GR  EA    ++++  G    ++++ I++    K+    ++  L  +MKEKG
Sbjct: 588 LLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKG 647

Query: 176 CFPDSTSFNTVIQGF 190
             PD+     +I  +
Sbjct: 648 VRPDNVFHTCMINMY 662



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  D   ++ +IN       + +A+  +D+M+A G     VTY  L+++  +     
Sbjct: 645 EKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLS 704

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA  L + +    +  N   ++  +D     G  E A K L     +G +  +V+ N LI
Sbjct: 705 SAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETA-KDLYFAMLQGFLANIVSVNTLI 763

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G CK G I EA  L+ +  E G FPD  S++TVI     K + + A
Sbjct: 764 KGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEA 810



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 13  HVYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I+G+C      K +E  + ++     L+ F  ++L++G C   RL EA  ++++
Sbjct: 548 YTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNE 607

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G   +L+++  +++   ++     +  L + ++      +   ++ +I+   + G 
Sbjct: 608 MAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGN 667

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A    D++   G +P  VTY  L+N LCK   +  A+ L  +M      P+S +FN 
Sbjct: 668 MVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNC 727

Query: 186 VIQGFLVKNETDRA 199
            +  F  +   + A
Sbjct: 728 FLDYFATEGNLETA 741



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           Q F  N       I G CK+ +I  AI       + G   D   YS++I+ LC    + E
Sbjct: 750 QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINE 809

Query: 59  AVELFDKMVAQGITAELVTYNPLI 82
           A+EL+++M+ +G+  ++V YN LI
Sbjct: 810 AIELWNEMLYKGVKPDIVAYNILI 833



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 71/169 (42%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           ++  GI  D    S ++  L    +   A  LFD M+  G+  +   Y   I    E + 
Sbjct: 153 SLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRN 212

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L+  ++ +  +++   Y+++I GLC+  R  EA    + +  +G+    VT   
Sbjct: 213 LDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRT 272

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L+ G C+   +  A ++   M   G  P   + + ++ G   K   + A
Sbjct: 273 LVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEA 321



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 41/162 (25%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+ +G   ++   ++LI G C   +++EA++L  +    G   + ++Y+ +IH+      
Sbjct: 747 AMLQGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHE------ 800

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
                                        LC+ G   EA +  +++  KG+ P +V YNI
Sbjct: 801 -----------------------------LCKKGDINEAIELWNEMLYKGVKPDIVAYNI 831

Query: 151 LINGLCKKGMIMEADKLL---VQMKEKGCFPDSTSFNTVIQG 189
           LI      G   E+DK L   + M +KG  P+  +   +  G
Sbjct: 832 LIRWCNIHG---ESDKCLGIYIDMVKKGVQPNWHTHRALFVG 870


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 11/207 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-----KKGICLDV----FVYSSLINGLCTF 53
           + ++R   N       + G+C +  + +A+     K+ +  +       YS+L+      
Sbjct: 272 MEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHT 331

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           N +  A+ELF +MV +G + + + Y  +I     + GR   A ++  ++++  ++L+ + 
Sbjct: 332 NNVGVAMELFHEMVDEGNSPDAIMYFTMI-SGLTQAGRLDDAWSMATSMKKAGFQLDAKA 390

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++I G CR  R  EA + L ++ E GL P V TYN L++GLCK G  +  D+LL +M 
Sbjct: 391 YNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMI 450

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + GC P   +F T+I G+    + D A
Sbjct: 451 DGGCRPSVVTFGTLIHGYCKVGQIDEA 477



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 9/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y I I G C+ + ++ A +        G+  DV+ Y++L++GLC         
Sbjct: 384 FQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVD 443

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           EL  KM+  G    +VT+  LIH  + K G+   A+ + ++++    + N  +Y+ +ID 
Sbjct: 444 ELLGKMIDGGCRPSVVTFGTLIH-GYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDF 502

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+      A +  D++ EK +   V T+N L+ GL  K M  +A +L+  M+E  C PD
Sbjct: 503 LCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPD 562

Query: 180 STSFNTVIQGFLVKNETDRASSFLKKN 206
             + + +++   V  ETDR   F++ +
Sbjct: 563 YVTIDILMEWLPVIGETDRLKHFMQHD 589



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 48/249 (19%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI---------KKGICLDVFVYSSLINGLCTF 53
           + +   + N   YGI + G+CK   +  A+         +  +C DV + +++++GLC  
Sbjct: 163 MRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKT 222

Query: 54  NRLKEAVELFDKMV--AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
            RL++AV+  ++ +    G     VTYN L H          A  L+  +E+++   N  
Sbjct: 223 GRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAV 282

Query: 112 VYSLVIDGLCRVGR--------------WEEARKK-----------------------LD 134
             + ++ GLC VGR              W EAR                           
Sbjct: 283 TLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFH 342

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ ++G  P  + Y  +I+GL + G + +A  +   MK+ G   D+ ++N +I GF  + 
Sbjct: 343 EMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRK 402

Query: 195 ETDRASSFL 203
             + A   L
Sbjct: 403 RLNEAYELL 411



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS        D   +++L++ L     L    +LF  M    +   +VTY  L+     K
Sbjct: 126 DSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVK-GLCK 184

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSL--VIDGLCRVGRWEEARKKLDQL--SEKGLVP 143
            GR   A+++L  +   + ++  +V  L  ++DGLC+ GR ++A K +++   S  G  P
Sbjct: 185 AGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAP 244

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             VTYN L +  C+ G +  A +L+ +M+++   P++ + NT++ G 
Sbjct: 245 NTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGL 291


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 35/213 (16%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS    G+  D++ Y++L++G C   R+ +A+ LF  M+ + +T   V+YN ++H  ++
Sbjct: 286 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 345

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR------------------------- 122
            +    A  +   +      ++I  Y+ V+ GLCR                         
Sbjct: 346 ARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILT 405

Query: 123 ----------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
                     VGR +EA++    +S  GLVP ++TY ++I  L K+    +AD L   M+
Sbjct: 406 FNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSME 465

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + GC PDS   N +I+  L K E  +A  +L K
Sbjct: 466 KSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSK 498



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 21  GMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G  ++  +D A++K       G+ LD  VY  LI G C    L +A EL   M+++GI  
Sbjct: 166 GTGRLDRLDDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPP 225

Query: 74  ELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
             + +   I +N  K+GR +    ++  +       N+  ++ ++DG C VG  +EA   
Sbjct: 226 PCIKFFTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL 285

Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           LD +   G+ P + TYN L++G CK G I +A  L   M  K     S S+N ++ G   
Sbjct: 286 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 345

Query: 193 KNET 196
              T
Sbjct: 346 ARRT 349



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)

Query: 14  VYGIRINGMC------KIRE-IDSAIKKGI---CLDVFVYSSLINGLCTFNRLKEAVELF 63
           VYG  I G C      K +E I   + KGI   C+  F  +S+IN LC   R+ E  ++ 
Sbjct: 194 VYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFF--TSIINNLCKEGRVAEGKDIV 251

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           D ++  G    L+T+N L+ D +   G    A+ LL ++E    E +I  Y+ ++DG C+
Sbjct: 252 DLIIHTGQRPNLITFNSLV-DGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCK 310

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A      +  K +    V+YNI+++GL +    + A ++  +M E G      +
Sbjct: 311 HGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHT 370

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           + TV+ G    N TD A+  L+K
Sbjct: 371 YATVLGGLCRNNCTDEANMLLEK 393



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 7/176 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     + H Y   + G+C+    D A           +  D+  ++ +I  +    
Sbjct: 358 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 417

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R++EA ELF  +   G+   ++TY  +I +  +++    A  L  ++E+     +  + +
Sbjct: 418 RMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILN 477

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +I  L   G   +A   L ++ +KG++P   T ++LI      G   E  KLL +
Sbjct: 478 EIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 533


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK   +  A       +  G+  D   Y+ LI+  C    L EA +L + M
Sbjct: 526 TYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGM 585

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+ G+   +VTY  LIH    +   +SA    + +     E N   Y+++I  LCR GR 
Sbjct: 586 VSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRT 645

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A     ++ E+GL P   TY +LI+G C++G   +A +L  +M + G  PD  + N +
Sbjct: 646 LLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 705

Query: 187 IQGF 190
            +GF
Sbjct: 706 FKGF 709



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           ++RE+   + KGI  D   Y+ +I+GLC    LK+A +L  KMV+ G+  + +TY  LIH
Sbjct: 510 QLREV--MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIH 567

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            + E+     A  LL  +  D  + ++  Y+++I   CR G    A     ++ + G+ P
Sbjct: 568 AHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEP 627

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
             +TYN+LI+ LC+ G  + A     +M E+G  P+  ++  +I G
Sbjct: 628 NEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDG 673



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   +  Y+++I+GL    +++ A   F +M A G+  +L+TYN +++   +      
Sbjct: 343 EGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKE 402

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ LL  L R      +  Y+ +IDG CR+G  EEAR+  +++ E+G  P V TY IL+N
Sbjct: 403 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  K   +  A +   +M  KG  PD  ++NT I   L+  +T +A
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKA 508



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y I +NG  K+R +       D  + KG+  D F Y++ I       
Sbjct: 444 EMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILG 503

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
              +A +L + M+ +GI  + VTYN +I D   K G    A  L   +  D  + +   Y
Sbjct: 504 DTHKAFQLREVMMLKGIYPDTVTYNVII-DGLCKTGNLKDAKDLKMKMVSDGLQPDCITY 562

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G   EARK L+ +   GL P VVTY ILI+  C++G +  A     +M +
Sbjct: 563 TCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLD 622

Query: 174 KGCFPDSTSFNTVIQGF 190
            G  P+  ++N +I   
Sbjct: 623 VGIEPNEITYNVLIHAL 639



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 21/190 (11%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +NG CK   +  A+       + G+   V  Y++LI+G C    L+EA  L ++M
Sbjct: 386 TYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEM 445

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-------LLQTLERDKYELNIEVYSLVIDG 119
           V QG   ++ TY  L+  N   + R   MA       L + L+ D +  N  + + +I  
Sbjct: 446 VEQGCFPDVCTYTILM--NGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELI-- 501

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
              +G   +A +  + +  KG+ P  VTYN++I+GLCK G + +A  L ++M   G  PD
Sbjct: 502 ---LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPD 558

Query: 180 STSFNTVIQG 189
             ++  +I  
Sbjct: 559 CITYTCLIHA 568



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  L+   Y+ +I+ L     L+ A +L D M      A   TYNPLI    E+      
Sbjct: 275 GCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK-KASSFTYNPLITALLERGFVQKV 333

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            AL   +E +     +  Y+ +I GL +  + E A+ K  ++   GL+P ++TYN ++NG
Sbjct: 334 EALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNG 393

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK G + EA  LL  ++  G  P   ++NT+I G+
Sbjct: 394 YCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY 429



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 22/194 (11%)

Query: 24  KIREIDSAIKKGICLDVF-------VYSSLINGLCTFNRLKEAVE------LFDKMVAQG 70
           + R+   A    +CL  F       V   + +  C    L++A        ++ +M+   
Sbjct: 179 QARDATPAACSTLCLAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLE 238

Query: 71  ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYE--LNIEVYSLVIDGLCRVGRWE 127
           I   +VTYN L+ D++ K+GR   A  LL+ +E       LN   Y++VI  L R G  E
Sbjct: 239 IEPTIVTYNTLL-DSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLE 297

Query: 128 EARKKLD--QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            A K +D  +LS+K       TYN LI  L ++G + + + L ++M+ +G  P   ++N 
Sbjct: 298 NAAKLVDSMRLSKKA---SSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNA 354

Query: 186 VIQGFLVKNETDRA 199
           +I G L   + + A
Sbjct: 355 IIHGLLKSEQVEAA 368


>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A       IK G   ++ VY++LINGL   ++ ++A+ +F +M
Sbjct: 131 AYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREM 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                +  ++TYN LI    +K+    A  L++ L     +  +  YS+++ GLC   + 
Sbjct: 191 GTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKV 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q++ KG  P V  +NILI+GLC  G +  A  L   M  + C P+  S NT+
Sbjct: 251 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPNLVSHNTL 310

Query: 187 IQGF 190
           ++GF
Sbjct: 311 MEGF 314



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 42/204 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   YGI ++G CK   ID ++       +KG  LD F YS++INGLC    
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A+ +   M+  G                                      NI VY+ 
Sbjct: 145 LDRALYVLTGMIKSGCKP-----------------------------------NIHVYNT 169

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GL    ++E+A +   ++      P ++TYN LI+GLCKK M  EA  L+ ++ +KG
Sbjct: 170 LINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKG 229

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P   +++ +++G  + ++ +RA
Sbjct: 230 LDPGVITYSMLMKGLCLDHKVERA 253



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             +  Y++LI+GLC      EA  
Sbjct: 161 KPNIHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYN 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +++ +G+   ++TY+ L+           A+ L   +    ++ ++++++++I GLC
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++ +   P +V++N L+ G  K G I  A  +  ++   G  PD  
Sbjct: 281 SVGKMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAILFL 362



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+  +ID A       ++  +  D  VY++++NG     ++K+  EL++ M ++G    +
Sbjct: 1   CESGDIDGAERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            ++N ++   ++       +++ + ++   +  +   Y +++ G C+ G  +++   L+ 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +KG V     Y+ +INGLCK+  +  A  +L  M + GC P+   +NT+I G +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLV 175



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  ++ +I    +    +       V  ++ ++ GL    +
Sbjct: 15  EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E + +++ M   G   + +TY  L+H  + K G    ++ +L+  E+    L+   YS
Sbjct: 75  VDEVISIWELMKESGFVEDSITYGILVH-GFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+    + A   L  + + G  P +  YN LINGL       +A ++  +M   
Sbjct: 134 AMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTM 193

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P   ++NT+I G   K     A + +K+
Sbjct: 194 HCSPTIITYNTLISGLCKKEMFGEAYNLVKE 224


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 4/196 (2%)

Query: 14  VYGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y   + G C+   +D+A +      +  D + Y+ LI GLC   R+ +A+ L D M+ +
Sbjct: 107 AYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR 166

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
                +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR  R ++A
Sbjct: 167 ECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDA 226

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           R+ L++LS  G  P  V+Y  ++ GLC      + + L  +M E  C P+  +F+ +++ 
Sbjct: 227 RQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRF 286

Query: 190 FLVKNETDRASSFLKK 205
           F      +RA   L +
Sbjct: 287 FCRGGMVERAIEVLDR 302



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 47/243 (19%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A +        G   D   Y++++ GLC 
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCA 254

Query: 53  FNR-----------------------------------LKEAVELFDKMVAQGITAELVT 77
             R                                   ++ A+E+ D+M   G TA    
Sbjct: 255 AKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 78  YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            N +I ++  KQGR   A   L  +       +   Y+ V+ GLCR GRWE+A++ L+++
Sbjct: 315 CNIVI-NSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEM 373

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             K   P  VT+N  I  LC+KG+I +A  L+ QM E GC     ++N ++ GF V+   
Sbjct: 374 VRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRV 433

Query: 197 DRA 199
           D A
Sbjct: 434 DSA 436



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 13  HVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   I G+C        +  +D  +++     V  Y+ L+  +C  +   +A+++ D+
Sbjct: 138 YTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDE 197

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M A+G T  +VTYN +I+    +     A  +L  L    ++ +   Y+ V+ GLC   R
Sbjct: 198 MRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKR 257

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           WE+      ++ E   VP  VT+++L+   C+ GM+  A ++L +M E GC  ++T  N 
Sbjct: 258 WEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNI 317

Query: 186 VIQGFLVKNETDRASSFL 203
           VI     +   D A  FL
Sbjct: 318 VINSICKQGRVDDAFEFL 335



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 47/245 (19%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           ++E     N  +  I IN +CK   +D A +        G   D   Y++++ GLC   R
Sbjct: 303 MSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGR 362

Query: 56  LKEAVELFDKMVAQ-----------------------------------GITAELVTYNP 80
            ++A EL ++MV +                                   G +  +VTYN 
Sbjct: 363 WEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNA 422

Query: 81  LIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
           L+ + +  QGR  SA+ L  +L     E N   Y+ ++ GLC   R + A + L ++ + 
Sbjct: 423 LV-NGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQN 478

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                VVT+N+L++  C+KG + EA +L+ QM E GC P+  +FNT++ G      ++ A
Sbjct: 479 DCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEA 538

Query: 200 SSFLK 204
              L 
Sbjct: 539 LELLH 543



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++ +  +G   DV++ + LI  LC   R  +A  +       G   ++  YN L+   
Sbjct: 56  RLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVA-G 114

Query: 86  WEKQGRFSAMALL---QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           + + GR  A   L     +  D Y      Y+ +I GLC  GR  +A   LD +  +   
Sbjct: 115 YCRYGRLDAARRLIASMPVPPDAY-----TYTPLIRGLCDRGRVGDALSLLDDMLRRECQ 169

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P VVTY +L+  +CK     +A K+L +M+ KGC P+  ++N +I G   ++  D A   
Sbjct: 170 PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQI 229

Query: 203 LKK 205
           L +
Sbjct: 230 LNR 232



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   + G+C    +D+A       ++    L+V  ++ L++  C    ++EA+E
Sbjct: 446 EPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIE 505

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+  G T  L+T+N L+    E      A+ LL  L      L+   YS ++D L 
Sbjct: 506 LVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLS 565

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R  R EEA +    + + G+ P  V YN +++ LCK+     A      M    C P+ +
Sbjct: 566 REDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNES 625

Query: 182 SFNTVIQGF 190
           ++  +I+G 
Sbjct: 626 TYVILIEGL 634



 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA + +++ + +G  P V     LI  LC++G   +A ++L   +  G   D  ++NT++
Sbjct: 53  EAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLV 112

Query: 188 QGFLVKNETDRASSFLKK 205
            G+      D A   +  
Sbjct: 113 AGYCRYGRLDAARRLIAS 130


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 11/208 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E   + N   Y + ING  K  +++SA++       +    DV  +SSLI+G C   
Sbjct: 314 DMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCG 373

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVY 113
           +L +A+ ++ +M    I   + T++ +IH   ++     A+  L+ L  R        +Y
Sbjct: 374 QLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIY 433

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VID LC+ G+ EEA   +  + EKG  P   TY ILI G C KG I EA  L  +M E
Sbjct: 434 NPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVE 493

Query: 174 KGCFPDSTSFNTVIQGFL---VKNETDR 198
            GC PD  + N+ I   L   + NE D+
Sbjct: 494 TGCRPDKITVNSFISCVLKAGMPNEVDQ 521



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 112/236 (47%), Gaps = 44/236 (18%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDK 65
            + I ++G+C+ ++++          + G+C+ +V  Y+S+I+G C   R+++A+ +++ 
Sbjct: 255 THNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYND 314

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+  G     VTYN LI+   +     SA+ + + L   +   ++  +S +IDG CR G+
Sbjct: 315 MLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQ 374

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKK--------------------------- 158
            ++A +   ++ +  + P V T++I+I+ LCK+                           
Sbjct: 375 LDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYN 434

Query: 159 ---------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                    G + EA+ ++  M+EKGC PD  ++  +I G  +K     A +   K
Sbjct: 435 PVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHK 490



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 29  DSAIKKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +S I+ G+   D + ++ +I G+C     ++A+EL ++M   G + + +T+N L+     
Sbjct: 206 ESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCR 265

Query: 88  KQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
            +       LL+ L+RD   + N+  Y+ VI G C+ GR E+A    + + E G  P  V
Sbjct: 266 AKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTV 325

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           TYN+LING  K   +  A ++  Q+  + C PD  +F+++I G+    + D A    K+
Sbjct: 326 TYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKE 384



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 38/186 (20%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQ--------------------------------- 69
           YS +I  LC   R ++A++LFD+M  Q                                 
Sbjct: 114 YSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKA 173

Query: 70  ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGR 125
              G   E   YN L++    +     A+AL ++  +D  Y  +   +++VI G+CRVG 
Sbjct: 174 SQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGN 233

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFN 184
           +++A + +++++E G  P  +T+NIL++GLC+   +     LL +++  G C P+  ++ 
Sbjct: 234 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYT 293

Query: 185 TVIQGF 190
           +VI G+
Sbjct: 294 SVISGY 299



 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           + YS VI  LCR GR  +A K  DQ++++ G +P  V ++ +       G++  A  LL 
Sbjct: 112 QSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLT 171

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  + G   +  ++N ++   + +     A +  + 
Sbjct: 172 KASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFES 207


>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Brachypodium distachyon]
          Length = 795

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 7/201 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +RFK     + + ++ +C    I  A       +K G+  D + YS+LI+GLC    L E
Sbjct: 232 ERFKPLGMSFNVLMSALCNWGFIQPAKSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDE 291

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           AV+LF+++  +G+  E VTYN LI+             ++Q +     E +I  Y+++I 
Sbjct: 292 AVDLFERVTEEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIA 351

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G  EE  K  + + ++GL   +VTY++L+N L KKG++ EA+ LL ++   G   
Sbjct: 352 GHCESGDVEEGMKIRNDILDQGLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHSIGLDM 411

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           D  +++ +I G+    E +RA
Sbjct: 412 DIIAYSILIHGYCKLGEIERA 432



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 7/202 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
           +++ E+  K N   Y + I G+CK       I  +D+   +G+  D   Y++LI G C  
Sbjct: 578 YEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADPVTYNTLIQGFCEV 637

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             ++ A  + D+MV  GI    VTYN LI+    K     A  LL++L     EL    Y
Sbjct: 638 QDIQMAFHIHDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAEYLLESLRERGIELRKFAY 697

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G   EA     +L + G    V  ++  IN LCK+    EA   +  M  
Sbjct: 698 TTLIKAECAKGMPYEAISLFGKLLDDGFETTVKDFSAAINRLCKRKFAKEAVMFIPFMLS 757

Query: 174 KGCFPDSTSFNTVIQGFLVKNE 195
            G FPD+  +  +++    + E
Sbjct: 758 AGVFPDTQVYYVLVRALQKRKE 779



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 37/188 (19%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           ++N M  I  +   ++KGI  +   YS +I GLC   R  +A+   D M  +G+ A+ VT
Sbjct: 569 KVNTMLSI--LYEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADPVT 626

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           YN LI                                    G C V   + A    D++ 
Sbjct: 627 YNTLIQ-----------------------------------GFCEVQDIQMAFHIHDRMV 651

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             G+VP  VTYN LIN LC KG +++A+ LL  ++E+G      ++ T+I+    K    
Sbjct: 652 YCGIVPTPVTYNFLINVLCLKGQVIQAEYLLESLRERGIELRKFAYTTLIKAECAKGMPY 711

Query: 198 RASSFLKK 205
            A S   K
Sbjct: 712 EAISLFGK 719



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
            G+  +Y + I+G  KI +I +A+         G+   +   +S++ G C    L+ A  
Sbjct: 481 PGDVVLYNVVIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAES 540

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGL 120
            F  +    +   +VTY  L+ D   + G+ + M ++L  +     + N   YS+VI GL
Sbjct: 541 YFRAIQISSLLPTMVTYTTLM-DALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGL 599

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+  R+ +A   LD +  +G+    VTYN LI G C+   I  A  +  +M   G  P  
Sbjct: 600 CKELRFHDAIHFLDNMHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTP 659

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I    +K +  +A   L+ 
Sbjct: 660 VTYNFLINVLCLKGQVIQAEYLLES 684



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 43/245 (17%)

Query: 3   LTEQRFKGNFHVYGIRING---MCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNR 55
           +TE+  K     Y   ING   +   RE+   I+    +GI  D+  Y+ LI G C    
Sbjct: 299 VTEEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGD 358

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++E +++ + ++ QG+   +VTY+ L++  ++K     A  LL  +     +++I  YS+
Sbjct: 359 VEEGMKIRNDILDQGLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSI 418

Query: 116 VIDGLCRVGRWEEARKKLD--------------------QLSEKGLV------------- 142
           +I G C++G  E A +  D                     L +KGL+             
Sbjct: 419 LIHGYCKLGEIERALEVCDVMCCSQKVVPTSLNHLSILVGLCKKGLLVEARWYLENVAVK 478

Query: 143 --PG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             PG VV YN++I+G  K G I  A  L  Q+   G FP   + N+++ G+    +   A
Sbjct: 479 YQPGDVVLYNVVIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAA 538

Query: 200 SSFLK 204
            S+ +
Sbjct: 539 ESYFR 543



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           +YG+R+  M  +   +     GI    + +S +I+GLC  +++ EA+    +        
Sbjct: 177 LYGLRMTDM-ALELFEEMEAYGISKSEYSHSIIIDGLCKQDKVGEALSFLQEARKGERFK 235

Query: 74  EL-VTYNPLIHD--NW---EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            L +++N L+    NW   +    F  + L   L  D+Y      YS +I GLC++G  +
Sbjct: 236 PLGMSFNVLMSALCNWGFIQPAKSFLCLMLKYGLNPDRY-----TYSTLIHGLCKIGFLD 290

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA    ++++E+G+    VTYN LING    G+  E  K++  M+ +G  PD  ++  +I
Sbjct: 291 EAVDLFERVTEEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILI 350

Query: 188 QG 189
            G
Sbjct: 351 AG 352



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           ++ +L N       + +A+ +  KM +  +   + TY+ L++       R + MAL    
Sbjct: 137 MWDALANSYARAQMIHDALYVLSKMNSLNMQISVSTYDSLLYGL-----RMTDMALELFE 191

Query: 102 ERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILINGLCK 157
           E + Y ++   YS  ++IDGLC+  +  EA   L Q + KG    P  +++N+L++ LC 
Sbjct: 192 EMEAYGISKSEYSHSIIIDGLCKQDKVGEALSFL-QEARKGERFKPLGMSFNVLMSALCN 250

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G I  A   L  M + G  PD  +++T+I G 
Sbjct: 251 WGFIQPAKSFLCLMLKYGLNPDRYTYSTLIHGL 283


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 12/210 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCT 52
            +L  Q  + N   Y   I G C    + +A+        + GI  D + Y++LI+G C 
Sbjct: 136 LELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCK 195

Query: 53  FNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
             R+++A ++FD+M+ QG +    V YN LI    ++     A+   + + +    + + 
Sbjct: 196 IGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVA 255

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+L++  L   GR  +A   L+++   GL P V TYNILING CK+G   +A ++  +M
Sbjct: 256 TYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEM 315

Query: 172 KEKGCFPDSTSFNTVIQGFLVK---NETDR 198
             KG    + ++ ++I  F  K    ETDR
Sbjct: 316 SRKGVRATAVTYTSLIYAFSRKGQVQETDR 345



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 3   LTEQRFKGNF----HVYGIRINGMCKIREIDSAIK-------KG-ICLDVFVYSSLINGL 50
           + E R +G      + Y   I+G CKI  ++ A K       +G +     +Y++LI G 
Sbjct: 170 MREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGY 229

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELN 109
           C   +L  A++  + MV +G+   + TYN L+H  +   GR S A A+L+ ++R+    +
Sbjct: 230 CDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALF-MDGRASDAYAVLEEMQRNGLSPD 288

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+++I+G C+ G  ++A +  +++S KG+    VTY  LI    +KG + E D+L  
Sbjct: 289 VFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFK 348

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              +KG  PD   +N +I       + +RA
Sbjct: 349 VAVKKGIRPDVVMYNALINSHCAGGDMERA 378



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 15/198 (7%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING CK       +   +   +KG+      Y+SLI       +++E   LF   
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVA 350

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +GI  ++V YN LI+ +        A  ++  +E+ +   +   Y+ +I G C +GR 
Sbjct: 351 VKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRL 410

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EAR  +D+++++G+ P +        GLCK G   +A+ L+ +M  KG  PD +++ ++
Sbjct: 411 DEARGLIDEMTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDDSTYISL 462

Query: 187 IQGFLVKNETDRASSFLK 204
           I+G    +E   A+   K
Sbjct: 463 IEGLTTVDEQMSAADAAK 480



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM--ALLQ 99
            ++ ++  LC   +   A+EL  +M         VTYN +I   +  +GR  A    + +
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIA-GFCARGRVQAALEVMRE 172

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKK 158
             ER     +   Y+ +I G C++GR E+A K  D++  +G + P  V YN LI G C +
Sbjct: 173 MRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDR 232

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +  A +    M ++G      ++N ++    +      A + L++
Sbjct: 233 GKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEE 279


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +++  +  K +   Y   +NG C++R++ +A        K G+  D   Y++LI+G C  
Sbjct: 243 WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKE 302

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEV 112
             L  A+E+  +M  +G+  + VTY  LI     K GR   A  +L  +     + +   
Sbjct: 303 GELDTAMEMKQEMSDEGVALDDVTYTALI-SGLSKAGRSVDAERILCEMMEAGLQPDNTT 361

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++VID  C+ G  +   K L ++  KG  PG+VTYN+++NG C  G +  AD LL  M 
Sbjct: 362 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAML 421

Query: 173 EKGCFPDSTSFNTVIQG 189
             G  P+  ++N ++ G
Sbjct: 422 NIGVCPNDITYNILLDG 438



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 42/214 (19%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM----- 66
           ++GMCK  ++++A        K GI  DV+ Y + I GLC   R+++A+E+F++M     
Sbjct: 156 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGL 215

Query: 67  ------------------------------VAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
                                           +G+ A+LV YN L++     +   +A  
Sbjct: 216 NPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAND 275

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ + +D  + +   Y+ +IDG C+ G  + A +   ++S++G+    VTY  LI+GL 
Sbjct: 276 IVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLS 335

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K G  ++A+++L +M E G  PD+T++  VI  F
Sbjct: 336 KAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAF 369



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N  V    I+  CK  ++ + ++       +G+  D+  Y++L+NG C   
Sbjct: 209 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 268

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            +K A ++ ++M   G+  + VTY  LI D   K+G   +AM + Q +  +   L+   Y
Sbjct: 269 DMKAANDIVEEMRKDGLKPDKVTYTTLI-DGCCKEGELDTAMEMKQEMSDEGVALDDVTY 327

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL + GR  +A + L ++ E GL P   TY ++I+  CK G +    K L +M+ 
Sbjct: 328 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQN 387

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  P   ++N V+ GF
Sbjct: 388 KGKNPGIVTYNVVMNGF 404



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+D+A++       +G+ LD   Y++LI+GL    R  +A  +  +M
Sbjct: 291 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 350

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G+  +  TY  +I D + K G   +    L+ ++       I  Y++V++G C +G+
Sbjct: 351 MEAGLQPDNTTYTMVI-DAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 409

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+ +   G+ P  +TYNIL++G CK G + + ++L      KG   D   + +
Sbjct: 410 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYTS 466

Query: 186 VIQGFLVK 193
           +I  F+ K
Sbjct: 467 LINEFVKK 474



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  +   ++ L+  +    +L  A  +FD+M+ +G+   +VT+N L+    +    
Sbjct: 106 LDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDL 165

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A AL   + +     ++  Y   I GLC+ GR ++A +  +++ E+GL P  V    L
Sbjct: 166 NNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL 225

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+  CK+G +    +L  +M  +G   D  ++N ++ GF
Sbjct: 226 IDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 264



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 19/193 (9%)

Query: 17  IRINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           IR   +   R + D  +++G+   V  +++L++G+C  + L  A  L   M   GI  ++
Sbjct: 125 IRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDV 184

Query: 76  VTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG--------RW 126
            TY   I     K GR   AM + + +       N  V + +ID  C+ G        RW
Sbjct: 185 YTYGAFIQ-GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRW 243

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E        ++ +G+   +V YN L+NG C+   +  A+ ++ +M++ G  PD  ++ T+
Sbjct: 244 E--------MATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 295

Query: 187 IQGFLVKNETDRA 199
           I G   + E D A
Sbjct: 296 IDGCCKEGELDTA 308



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+++GI + +  +S L+N L +   + EA   +  ++  G+  E   +N L+ D      
Sbjct: 73  ALRRGIRVPMPAWSDLMNRLPS---VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGK 129

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             SA  +   + R   +  +  ++ ++ G+C+      A      +++ G+ P V TY  
Sbjct: 130 LASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGA 189

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            I GLCK G I +A ++  +M E+G  P++    T+I  
Sbjct: 190 FIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 228


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N +CK   +  A++        G   +   Y+SL+ GLC    L +++++ DK + +G+
Sbjct: 139 VNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGL 198

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              + TY+ L+   ++++G   A+ LL  +     + N+  Y++++ GLC+ GR EEA +
Sbjct: 199 VPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQ 258

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               L  KG  P VV+YNIL+  LC +G   +A +LL +M      P   +FN +I    
Sbjct: 259 FFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLA 318

Query: 192 VKNETDRA 199
           +  +TD+A
Sbjct: 319 LHGQTDQA 326



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  +  N   Y   + G+C        ++ +D  +KKG+  +VF YS L+        
Sbjct: 158 MEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERG 217

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA+ L D++VA+G    LV+YN L+     K+GR   AM   + L    +  N+  Y+
Sbjct: 218 ADEAIRLLDEIVAKGGKPNLVSYNVLL-TGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYN 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++  LC  GRWE+A++ L ++      P +VT+NILI  L   G   +A ++L  M   
Sbjct: 277 ILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRA 336

Query: 175 GCFPDSTSFNTVI 187
                + S+N +I
Sbjct: 337 RFKATAASYNPII 349



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 92/177 (51%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  I KG   D    + L+  LC  N++++A ++ + M+  G T +  +   L+++  +
Sbjct: 85  LEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCK 144

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     AM L++ +E   Y  N   Y+ ++ GLC  G   ++ + LD+  +KGLVP V T
Sbjct: 145 RGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFT 204

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           Y+ L+    K+    EA +LL ++  KG  P+  S+N ++ G   +  T+ A  F +
Sbjct: 205 YSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFR 261



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 41/237 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKG-ICLDVFVYSSLINGLCTFN 54
           DL  + F  N   Y I +  +C      K +E+ + +  G     +  ++ LI  L    
Sbjct: 262 DLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHG 321

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH---------------DNW------EKQGRFS 93
           +  +A+E+ D M      A   +YNP+I                D          +G ++
Sbjct: 322 QTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYN 381

Query: 94  AMALL-------------QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
           A+A+L             Q+L   +     + Y  VI  LCR G    A + L ++++ G
Sbjct: 382 AIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYG 441

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            VP   TY+ LI GLC +GM+ EA ++   M+E  C PD  +FN +I G     +TD
Sbjct: 442 FVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTD 498



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 41/232 (17%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y + + G+CK    + A++       KG   +V  Y+ L+  LC   R ++A E
Sbjct: 234 KPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKE 293

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M     +  +VT+N LI           A+ +L  + R +++     Y+ +I  LC
Sbjct: 294 LLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLC 353

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNIL------------------------------ 151
           + G+ +   K LDQ+  +   P   TYN +                              
Sbjct: 354 KEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDF 413

Query: 152 ----INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
               I+ LC+KG    A +LL +M + G  PDS +++++I+G   +   D A
Sbjct: 414 YKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEA 465



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYS---------SLINGLCT 52
           D++  RFK     Y   I  +CK  ++D  +K   CLD  +Y          + I  LC 
Sbjct: 332 DMSRARFKATAASYNPIIARLCKEGKVDLVVK---CLDQMMYRRCNPNEGTYNAIAVLCE 388

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             +++EA  +   +  +  ++    Y  +I     K   + A  LL  + +  +  +   
Sbjct: 389 EGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYT 448

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +I GLC  G  +EA +    + E    P V  +N LI GLCK      +  +   M 
Sbjct: 449 YSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMV 508

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +KG  P+ T++  +++G   + E + A++ LK+
Sbjct: 509 KKGYMPNETTYTIIVEGIAHQEEMELAAAVLKE 541



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 47/88 (53%)

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+  +  +A K ++ +   G  P   +   L+N LCK+G +  A +L+ +M+E G   +
Sbjct: 107 LCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTN 166

Query: 180 STSFNTVIQGFLVKNETDRASSFLKKNM 207
           + ++N++++G  +     ++   L K M
Sbjct: 167 TVTYNSLVRGLCMHGNLSQSLQILDKFM 194



 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G   D + YSSLI GLC+   L EA+E+F  M       ++  +N LI    + +   
Sbjct: 439 KYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTD 498

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
            ++ + + + +  Y  N   Y+++++G+      E A   L +L
Sbjct: 499 LSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLKEL 542


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGM----CKIREIDSA---IKKGICLDVFVYSSLINGLCTFN 54
           +++E+    + H+Y   I+      C+I   D+    IK G   D+  Y+ LI G C+  
Sbjct: 267 EMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCG 326

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            + +A +L ++ + +G+    V+Y PLIH N+ KQG +  A+ LL  +    ++ ++  Y
Sbjct: 327 EVHKAEQLLEQAIKRGLLPNKVSYTPLIH-NYCKQGEYLRALDLLIKMSERGHKPDLVTY 385

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL   G  + A    +++ EKG++P    YN+L++GLCKKG +  A  LL +M +
Sbjct: 386 AALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLD 445

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +   PD+    T++ GF+   + + A    +
Sbjct: 446 QNVAPDAFITATLVDGFIRHGDFEEAKKLFE 476



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK  + + A         KG    V  Y ++ING C   + +   +L 
Sbjct: 206 NIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLL 265

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G+   +  YN +I   ++   R  A   +  + +   + ++  Y+++I G C  
Sbjct: 266 VEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSC 325

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   +A + L+Q  ++GL+P  V+Y  LI+  CK+G  + A  LL++M E+G  PD  ++
Sbjct: 326 GEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTY 385

Query: 184 NTVIQGFLVKNETDRA 199
             +I G +V  E D A
Sbjct: 386 AALIHGLIVAGEVDVA 401



 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 19/198 (9%)

Query: 15  YGIRINGMCK----IREIDSAIK---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+  CK    +R +D  IK   +G   D+  Y++LI+GL     +  A+ + +KMV
Sbjct: 350 YTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMV 409

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALL------QTLERDKYELNIEVYSLVIDGLC 121
            +G+  +   YN L+     K+GR  A  +L      Q +  D +     + + ++DG  
Sbjct: 410 EKGVLPDANIYNVLM-SGLCKKGRLPAAKVLLAEMLDQNVAPDAF-----ITATLVDGFI 463

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G +EEA+K  +   EKG+ PGVV YN +I G CK GM+ +A     +M +    PD  
Sbjct: 464 RHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEF 523

Query: 182 SFNTVIQGFLVKNETDRA 199
           +++T+I G++  N+   A
Sbjct: 524 TYSTIIDGYIKMNDLHGA 541



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
            I+KGI   V  Y+++I G C F  +K+A+  F +M+    + +  TY+ +I    +   
Sbjct: 478 TIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMND 537

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ +   + +   + N+  Y+L+I+G C  G    A K   Q+    L P VVTY I
Sbjct: 538 LHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTI 597

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LI   CK   + +A     QM  + C P+  ++N ++ G 
Sbjct: 598 LIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGL 637



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 23  CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           CK+   D  + +   +D +    ++ GLC   ++++  +L +K   +G    +V YN LI
Sbjct: 157 CKV--YDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLI 214

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
               +K     A  L + L+   +   ++ Y  +I+G C+ G++E   K L ++SE+GL 
Sbjct: 215 DGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLD 274

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             +  YN +I+   K G  +EA   +  M + GC PD  ++N +I G     E  +A   
Sbjct: 275 VSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQL 334

Query: 203 LKK 205
           L++
Sbjct: 335 LEQ 337



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+    + ++Y + ++G+CK   + +A       + + +  D F+ ++L++G      
Sbjct: 408 MVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGD 467

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +EA +LF+  + +GI   +V YN +I    +      A+   + + +  +  +   YS 
Sbjct: 468 FEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYST 527

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  ++     A +    + +    P VVTY +LING C  G I  A+K   QM    
Sbjct: 528 IIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLR 587

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P+  ++  +I  F       +A SF ++
Sbjct: 588 LKPNVVTYTILIGCFCKGVNLTKACSFFEQ 617



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-DNWEKQGRF-SAMA 96
           DVF  +SL+N L    +++ A +++D+MV +    E+  Y   I      K+G+      
Sbjct: 136 DVFSCNSLLNVLVKHGKVEIACKVYDEMVDR--NGEVDNYTVCIMVKGLCKEGKVEDGWK 193

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L++         NI  Y+ +IDG C+ G  E A     +L  KG +P V TY  +ING C
Sbjct: 194 LIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFC 253

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           KKG     DKLLV+M E+G       +N +I  
Sbjct: 254 KKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDA 286



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++ L + G+ E A K  D++ ++       T  I++ GLCK+G + +  KL+ +   +G
Sbjct: 143 LLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRG 202

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P+   +NT+I G+  K +T+RA+   K+
Sbjct: 203 CMPNIVFYNTLIDGYCKKGDTERANVLFKE 232



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 19/214 (8%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA---IKKGICL----DVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y + ING C   +I+ A    K+ + L    +V  Y+ LI   C    L +A  
Sbjct: 554 KPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACS 613

Query: 62  LFDKMVAQGITAELVTYNPLIH----------DNWEKQGRFSAMAL--LQTLERDKYELN 109
            F++M+ +      VTYN L++           N   +   +++ L     +  D ++  
Sbjct: 614 FFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRR 673

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
              Y+ ++  LC+    + A    D++  KG +P  V+   L++GLC +G   + + ++ 
Sbjct: 674 AASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVIS 733

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               +     +  ++  +  FL + +T  AS  L
Sbjct: 734 CKLNERELQVAVKYSEKLDAFLSQGQTSEASLIL 767


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I++    G+   +  Y+ LI+G C   +L  A+E+  +M  +G     VTYN  +H   +
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+AL + +   K  L++  Y+ +IDGLC+ G+  EA   LD++   G VP    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN +++ LCK   I EA KL  +M   G  PD  +F  ++ G+   +  D A   L++
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQ 245



 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +GI ++G+CK   +  A +       +G   +  V++ +++ LC   R  EA    + M
Sbjct: 12  TFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETM 71

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + G++  +VTYN LI    +++    A+ +LQ +    +E N   Y+  + GLC+ G+ 
Sbjct: 72  RSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A      ++EK +   V  Y  LI+GLC+ G + EA  LL +M+  GC P    +N +
Sbjct: 132 DDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAI 191

Query: 187 IQGFLVKNETDRASSFLKK 205
           +      +  + A    K+
Sbjct: 192 LSWLCKGSRINEAHKLFKR 210



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T +  + N   Y   ++G+CK  ++D A+       +K I LDV+ Y++LI+GLC   
Sbjct: 105 EMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAG 164

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEV 112
           +L EA  L D+M   G   +   YN ++  +W  +G     A  L + +       +   
Sbjct: 165 KLAEAYSLLDEMENSGCVPKPGCYNAIL--SWLCKGSRINEAHKLFKRMTGSGILPDWLT 222

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + +++ G CR  R ++A   L Q+   GL P  V YN LI+ L + G + EA +LL +M 
Sbjct: 223 FGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETD 197
            +G  P+S ++       + K +TD
Sbjct: 283 SRGLSPNSRTY-----ALMRKQQTD 302



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    V  +  L++GLC  NRL +A EL + M  +G     + +N  I D   K+GR 
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNG-IMDALCKEGRS 61

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + A   ++T+        I  Y+++IDG C+  +   A + L +++ +G  P  VTYN  
Sbjct: 62  AEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTF 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++GLCK G + +A  L   M EK    D   + T+I G     +   A S L
Sbjct: 122 LHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLL 173



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G CK  ++  A++       +G   +   Y++ ++GLC + ++ +A+ LF  M
Sbjct: 82  TYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             + I  ++  Y  LI D   + G+ + A +LL  +E          Y+ ++  LC+  R
Sbjct: 142 TEKKIRLDVYGYTTLI-DGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSR 200

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA K   +++  G++P  +T+ +++ G C+   I +A  LL QMK  G  P    +NT
Sbjct: 201 INEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNT 260

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I           A   L++
Sbjct: 261 LIDALNRAGRVSEAYRLLQE 280



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 54/97 (55%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +  + +++DGLC+  R  +A + ++ ++E+G  P  + +N +++ LCK+G   EA   +
Sbjct: 9   TVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYI 68

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M+  G  P   ++N +I GF  + +  RA   L++
Sbjct: 69  ETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQE 105


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK ++I+ A +       +G+  +   Y++LI+GLC   R++EA +L 
Sbjct: 348 NVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLM 407

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M+ +G+  +  TYN ++     +     A  ++QT+  +  E +I  Y  +I GLC+ 
Sbjct: 408 DQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKA 467

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR E A + L  +  KG+V     YN +I  L K+    EA +L  +M+EKG  PD+ ++
Sbjct: 468 GRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTY 527

Query: 184 NTVIQGF 190
             V +G 
Sbjct: 528 KIVFRGL 534



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG   D F Y+ LI+ LC   +L+EA+ L  +M   G    ++TYN LI    + +    
Sbjct: 308 KGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEE 367

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +   +E      N   Y+ +IDGLC+  R +EA + +DQ+  +GL P   TYN ++ 
Sbjct: 368 AEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLT 427

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             C++G I +A  ++  M   GC PD  ++ T+I G       + AS  L+
Sbjct: 428 YFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLR 478



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 19/205 (9%)

Query: 14  VYGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+ +C   K++E    +++    G   +V  Y++LI+G C   +++EA E+FD+M
Sbjct: 316 TYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQM 375

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA------LLQTLERDKYELNIEVYSLVIDGL 120
             QG++   VTYN LI D   K  R    A      +++ L+ DK+      Y+ ++   
Sbjct: 376 EIQGLSRNSVTYNTLI-DGLCKSRRVQEAAQLMDQMIMEGLKPDKF-----TYNSMLTYF 429

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G  ++A   +  ++  G  P +VTY  LI GLCK G +  A +LL  ++ KG     
Sbjct: 430 CREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTP 489

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N VIQ    +  T  A    ++
Sbjct: 490 HAYNPVIQALFKRKRTKEAMRLFRE 514



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 14/186 (7%)

Query: 20  NGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           +G CK   I+ A+            S I+ +    +   A+EL+++M  +G   +  TYN
Sbjct: 271 HGFCKEGRIEEAL------------SFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYN 318

Query: 80  PLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D+   +G+   A+ LL+ +E      N+  Y+ +IDG C+  + EEA +  DQ+  
Sbjct: 319 MLI-DSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEI 377

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +GL    VTYN LI+GLCK   + EA +L+ QM  +G  PD  ++N+++  F  + +  +
Sbjct: 378 QGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQK 437

Query: 199 ASSFLK 204
           A+  ++
Sbjct: 438 AADIVQ 443



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + +    G   D+  Y +LI GLC   R++ A  L   +  +G+      YNP+I   ++
Sbjct: 442 VQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFK 501

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVPGVV 146
           ++    AM L + +E      +   Y +V  GL    G   EA   + ++ EKG +P   
Sbjct: 502 RKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFS 561

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           ++ +L  GLC   M     KL+  + EK  F  S +   +I+GFL
Sbjct: 562 SFYMLAEGLCSLSMEDTLIKLVDLVMEKANF--SQNEVVMIRGFL 604



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD  +Y+ L+N L   N+LK    +   MV++GI  ++ T+N LI    +      A
Sbjct: 153 GLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPA 212

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +++ +       + + ++ ++ G    G  + A +  +Q+ + G     VT N+L++G
Sbjct: 213 ILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHG 272

Query: 155 LCKKGMIME----------------ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
            CK+G I E                A +L  +MK KGC PD  ++N +I     + +   
Sbjct: 273 FCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQE 332

Query: 199 ASSFLKK 205
           A   L++
Sbjct: 333 ALGLLRE 339


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 105/197 (53%), Gaps = 7/197 (3%)

Query: 8   FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   +G  +NG C +         +D  +  G   +V +Y+++I+ LC   ++  A+
Sbjct: 145 FEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           ++   M   GI  ++VTYN LI   +       +  +L  + R     ++  +S +ID  
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+  EA+K+ +++ ++ + P +VTYN LINGLC  G++ EA K+L  +  KG FP++
Sbjct: 265 GKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNA 324

Query: 181 TSFNTVIQGFLVKNETD 197
            ++NT+I G+      D
Sbjct: 325 VTYNTLINGYCKAKRVD 341



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           ++ N  +Y   I+ +C+  ++++A+       K GI  DV  Y+SLI  L        + 
Sbjct: 180 YEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSA 239

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
            +   M+  GI+ +++T++ LI D + K+G+   A      + +     NI  Y+ +I+G
Sbjct: 240 RILSDMMRMGISPDVITFSALI-DVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  G  +EA+K L+ L  KG  P  VTYN LING CK   + +  K+L  M   G   D
Sbjct: 299 LCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGD 358

Query: 180 STSFNTVIQGF 190
           + ++NT+ QG+
Sbjct: 359 TFTYNTLYQGY 369



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   ING+C    +D A       + KG   +   Y++LING C   
Sbjct: 279 EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAK 338

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
           R+ + +++   M   G+  +  TYN L +  + + G+FSA   +L  +       ++  +
Sbjct: 339 RVDDGMKILCVMSRDGVDGDTFTYNTL-YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTF 397

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++DGLC  G+  +A  +L+ L +   V G++TYNI+I GLCK   + +A  L   +  
Sbjct: 398 NILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLAL 457

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  PD  ++ T++ G   K     A    +K
Sbjct: 458 KGVSPDVITYITMMIGLRRKRLWREAHELYRK 489



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L  + F  N   Y   ING CK + +D  +K        G+  D F Y++L  G C   +
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGK 374

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
              A ++  +MV+ G+  ++ T+N L+ D     G+   A+  L+ L++ K  + I  Y+
Sbjct: 375 FSAAEKVLGRMVSCGVHPDMYTFNILL-DGLCDHGKIGKALVRLEDLQKSKTVVGIITYN 433

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KE 173
           ++I GLC+  + E+A      L+ KG+ P V+TY  ++ GL +K +  EA +L  +M KE
Sbjct: 434 IIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKE 493

Query: 174 KGCFP 178
            G  P
Sbjct: 494 DGLMP 498



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           F     VYG     +   ++ +  I++ +  ++  Y+SLINGLC    L EA ++ + +V
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G     VTYN LI+   + +     M +L  + RD  + +   Y+ +  G C+ G++ 
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFS 376

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A K L ++   G+ P + T+NIL++GLC  G I +A   L  +++        ++N +I
Sbjct: 377 AAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436

Query: 188 QGFLVKNETDRA 199
           +G    ++ + A
Sbjct: 437 KGLCKADKVEDA 448



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI  D++ +++LI+  C   RL  A+    KM+  G    +VT+  L++        + A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M+L+  +    YE N+ +Y+ +ID LC  G+   A   L  + + G+ P VVTYN LI  
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           L   G    + ++L  M   G  PD  +F+ +I  +
Sbjct: 229 LFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%)

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +  +A+ LF  M        +V ++ L+    +     + ++L + LE      ++  ++
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +ID  CR  R   A   L ++ + G  P +VT+  L+NG C      EA  L+ Q+   
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  P+   +NT+I     K + + A   LK
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLK 208


>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 184



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I++    G+   +  Y+ LI+G C   +L  A+E+  +M  +G     VTYN  +H   +
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+AL + +   K  L++  Y+ +IDGLC+ G+  EA   LD++   G VP    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN +++ LCK   I EA KL  +M   G  PD  +F  ++ G+   +  D A   L++
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQ 245



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +GI ++G+CK   +  A +       +G   +  V++ +++ LC   R  EA    + M
Sbjct: 12  TFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETM 71

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            + G++  +VTYN LI    +++    A+ +LQ +    +E N   Y+  + GLC+ G+ 
Sbjct: 72  RSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A      ++EK +   V  Y  LI+GLC+ G + EA  LL +M+  GC P    +N +
Sbjct: 132 DDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAI 191

Query: 187 IQGFLVKNETDRASSFLKK 205
           +      +  + A    K+
Sbjct: 192 LSWLCKGSRINEAHKLFKR 210



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T +  + N   Y   ++G+CK  ++D A+       +K I LDV+ Y++LI+GLC   
Sbjct: 105 EMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAG 164

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEV 112
           +L EA  L D+M   G   +   YN ++  +W  +G     A  L + +       +   
Sbjct: 165 KLAEAYSLLDEMENSGCVPKPGCYNAIL--SWLCKGSRINEAHKLFKRMTGSGILPDWLT 222

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + +++ G CR  R ++A   L Q+   GL P  V YN LI+ L + G + EA +LL +M 
Sbjct: 223 FGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETD 197
            +G  P+S ++       + K +TD
Sbjct: 283 SRGLSPNSRTY-----ALMRKQQTD 302



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG    V  +  L++GLC  NRL +A EL + M  +G     + +N  I D   K+GR 
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNG-IMDALCKEGRS 61

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + A   ++T+        I  Y+L+IDG C+  +   A + L +++ +G  P  VTYN  
Sbjct: 62  AEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTF 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++GLCK G + +A  L   M EK    D   + T+I G     +   A S L
Sbjct: 122 LHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLL 173



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G CK  ++  A++       +G   +   Y++ ++GLC + ++ +A+ LF  M
Sbjct: 82  TYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM 141

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             + I  ++  Y  LI D   + G+ + A +LL  +E          Y+ ++  LC+  R
Sbjct: 142 TEKKIRLDVYGYTTLI-DGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSR 200

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             EA K   +++  G++P  +T+ +++ G C+   I +A  LL QMK  G  P    +NT
Sbjct: 201 INEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNT 260

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I           A   L++
Sbjct: 261 LIDALNRAGRVSEAYRLLQE 280



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 53/97 (54%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +  + +++DGLC+  R  +A + ++ + E+G  P  + +N +++ LCK+G   EA   +
Sbjct: 9   TVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFI 68

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             M+  G  P   ++N +I GF  + +  RA   L++
Sbjct: 69  ETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQE 105


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +L E  F  N  +Y   I+G CK  EI+ A        K G+  + + Y+ LI+GL    
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
             K+  E+++KM   G+   L TYN  + +   K GR   A  +   +       NI  Y
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLYTYN-CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLCR  +  EA K +DQ+    + P ++TYN LI+G C  G + +A  L   +K 
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKS 366

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G  P   ++N ++ GF  K +T  A+  +K+
Sbjct: 367 RGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKE 398



 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 108/199 (54%), Gaps = 7/199 (3%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + +GI I G C+  EI+ +        + G   +V +Y++LI+G C    +++A +LF +
Sbjct: 164 YSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M   G+ A   TY  LIH  ++   +     + + ++      N+  Y+ V++ LC+ GR
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGR 283

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A K  D++ E+G+   +VTYN LI GLC++    EA+K++ QMK     P+  ++NT
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNT 343

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I GF    +  +A S  +
Sbjct: 344 LIDGFCSVGKLGKALSLCR 362



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I G+C+  + + A K         I  ++  Y++LI+G C+  
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVG 352

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A+ L   + ++G++  LVTYN L+     K     A  +++ +E    + +   Y+
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID   R    E A +    + E GLVP V TY++LI+G C KG + EA +L   M EK
Sbjct: 413 ILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
              P+   +NT+I G+  +  + RA
Sbjct: 473 MLEPNEVIYNTMILGYCKEGSSYRA 497



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C + ++  A+        +G+   +  Y+ L++G C       A ++ 
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMV 396

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +GI    VTY  LI          +A+ L  ++E      ++  YS++I G C  
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EA +    + EK L P  V YN +I G CK+G    A +L   M+EK   P+  S+
Sbjct: 457 GQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASY 516

Query: 184 NTVIQ 188
           + +I+
Sbjct: 517 SYLIR 521



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 7/192 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL  +    +   Y + ++G C+  +   A K       +GI      Y+ LI+     +
Sbjct: 363 DLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A++L   M   G+  ++ TY+ LIH    K     A  L +++     E N  +Y+
Sbjct: 423 NMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYN 482

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+ G    A +    + EK L P V +Y+ LI  LCK+  + EA+ L+ +M + 
Sbjct: 483 TMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDS 542

Query: 175 GCFPDSTSFNTV 186
           G  P  T  N +
Sbjct: 543 GIDPSDTICNLI 554



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y  +IN       L  ++  F++MV +G       +N L+         F+        
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLL-TFVVGSSSFNQWWCFFNE 154

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
            + K  L++  + +VI G C  G  E++   L +L E G  P VV Y  LI+G CKKG I
Sbjct: 155 SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            +A  L  +M + G   +  ++  +I G L KN
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHG-LFKN 246



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 35/143 (24%)

Query: 92  FSAMALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG------ 144
           F++ +LL  L E +  +    +Y ++I+   +    + +    +++ +KG VPG      
Sbjct: 75  FTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNN 134

Query: 145 ----------------------------VVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
                                       V ++ I+I G C+ G I ++  LLV+++E G 
Sbjct: 135 LLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF 194

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            P+   + T+I G   K E ++A
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKA 217


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F    + F+ N   Y + I  +CK+ +ID A+        K    DVF YS+L+NGLC  
Sbjct: 187 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 246

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            R+ EAV L D+M A+G     VT+N LI D   K G  S A  L+  +       N   
Sbjct: 247 RRVDEAVFLLDEMQAEGCLPNPVTFNVLI-DALSKNGDLSRAAKLVDNMFLKGCVPNEVT 305

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I GLC  G+ ++A   L+++     VP  VTY  +INGL K+    +   +L+ M+
Sbjct: 306 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 365

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E+G   +   ++++I G   + +++ A    K+
Sbjct: 366 ERGQKANEYIYSSLISGLFKEGKSENAVRLWKE 398



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 98/172 (56%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D+   KG   +   Y++LI+GLC   +L +A+ L +KMV+       VTY  +I+   +
Sbjct: 291 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVK 350

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           ++     + +L ++E    + N  +YS +I GL + G+ E A +   +++EKG  P VV 
Sbjct: 351 QRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVV 410

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y   I+GLC+     EA+ +L +M  KG  P++ +++++++GF  K ++ +A
Sbjct: 411 YGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKA 462



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K N  VYG  I+G+C+  + D A       + KG   + F YSSL+ G     
Sbjct: 398 EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 457

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             ++A+ ++ +M++Q +   +V  + L++   E      A+ +   +  +  + ++  YS
Sbjct: 458 DSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 517

Query: 115 LVIDGLCRVGRWEEARKKLD--QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +I GLC VG  ++  K     Q  E    P VVTYNIL N LC++  +  A  LL  M 
Sbjct: 518 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 577

Query: 173 EKGCFPDSTSFNTVIQ 188
           ++GC PDS + N  ++
Sbjct: 578 DEGCDPDSLTCNIFLE 593



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K N ++Y   I+G+ K  + ++A++       KG   +V VY + I+GLC   +
Sbjct: 364 MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 423

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA ++  +M+++G      TY+ L+   ++K     A+ + + +       N+   S+
Sbjct: 424 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 483

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +++GLC  GR  EA      +  +GL P VV Y+ +I GLC  G + +  KL  +M  +E
Sbjct: 484 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQE 543

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N +      ++   RA   L
Sbjct: 544 PKSRPDVVTYNILFNALCRQDNLTRAIDLL 573


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
           F    + F+ N   Y + I  +CK+ +ID A+        K    DVF YS+L+NGLC  
Sbjct: 163 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 222

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
            R+ EAV L D+M A+G     VT+N LI D   K G  S A  L+  +       N   
Sbjct: 223 RRVDEAVFLLDEMQAEGCLPNPVTFNVLI-DALSKNGDLSRAAKLVDNMFLKGCVPNEVT 281

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ +I GLC  G+ ++A   L+++     VP  VTY  +INGL K+    +   +L+ M+
Sbjct: 282 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 341

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E+G   +   ++++I G   + +++ A    K+
Sbjct: 342 ERGQKANEYIYSSLISGLFKEGKSENAVRLWKE 374



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 98/172 (56%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D+   KG   +   Y++LI+GLC   +L +A+ L +KMV+       VTY  +I+   +
Sbjct: 267 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVK 326

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           ++     + +L ++E    + N  +YS +I GL + G+ E A +   +++EKG  P VV 
Sbjct: 327 QRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVV 386

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           Y   I+GLC+     EA+ +L +M  KG  P++ +++++++GF  K ++ +A
Sbjct: 387 YGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKA 438



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K N  VYG  I+G+C+  + D A       + KG   + F YSSL+ G     
Sbjct: 374 EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 433

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             ++A+ ++ +M++Q +   +V  + L++   E      A+ +   +  +  + ++  YS
Sbjct: 434 DSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 493

Query: 115 LVIDGLCRVGRWEEARKKLD--QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            +I GLC VG  ++  K     Q  E    P VVTYNIL N LC++  +  A  LL  M 
Sbjct: 494 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 553

Query: 173 EKGCFPDSTSFNTVIQ 188
           ++GC PDS + N  ++
Sbjct: 554 DEGCDPDSLTCNIFLE 569



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E+  K N ++Y   I+G+ K  + ++A++       KG   +V VY + I+GLC   +
Sbjct: 340 MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 399

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA ++  +M+++G      TY+ L+   ++K     A+ + + +       N+   S+
Sbjct: 400 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 459

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM--KE 173
           +++GLC  GR  EA      +  +GL P VV Y+ +I GLC  G + +  KL  +M  +E
Sbjct: 460 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQE 519

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               PD  ++N +      ++   RA   L
Sbjct: 520 PKSRPDVVTYNILFNALCRQDNLTRAIDLL 549


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ ++ F  N   Y   + G+ +++E+D A+K       +G C DV  Y+ L+ GL   +
Sbjct: 361 DMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAH 420

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R +EA  LF++MV +G+   +VTYN LI D W K G    AM  L ++   + E N+  Y
Sbjct: 421 RTEEARNLFNEMVMKGLIPSVVTYNLLI-DGWCKNGCIDDAMNCLCSMSAKEREPNVFTY 479

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +IDGLC+ GR ++A    +++  +G  P  V +   I+GLCK      A     +M+E
Sbjct: 480 TTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEE 539

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   PD+  + +++  F+  +    A   LKK
Sbjct: 540 EEMEPDTYVYISLVSAFVNISNFPMAFEILKK 571



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 107/208 (51%), Gaps = 7/208 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLK 57
           +++ + N   + I ING+ +  ++D A+       + G   D+ +Y++LINGLC  +RL+
Sbjct: 224 DEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLE 283

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E+ +L  +M   G      T N +     ++Q    A+ L++ +     E  ++ Y+L++
Sbjct: 284 ESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLV 343

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC+ G+  EA   L  + ++G  P ++ Y+ L+ GL +   + +A KL   +  +G  
Sbjct: 344 RKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRC 403

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  ++N +++G    + T+ A +   +
Sbjct: 404 PDVIAYNILMKGLYEAHRTEEARNLFNE 431



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LC   +  EA      MV +G    ++ Y+ L+    E Q    A+ L + + 
Sbjct: 339 YTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDIS 398

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 ++  Y++++ GL    R EEAR   +++  KGL+P VVTYN+LI+G CK G I 
Sbjct: 399 ARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCID 458

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +A   L  M  K   P+  ++ T+I G       D A
Sbjct: 459 DAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDA 495



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRF 92
           +G+    +  + ++   C   +  EA+ +F+++   G + A + +   L    W +  + 
Sbjct: 4   QGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGWLDAYVFSILVLSFSKWGQVDK- 62

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            +   ++ +E   + LN + +  +I G  +  R ++  +   ++ + GL P +  Y++LI
Sbjct: 63  -SFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLI 121

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            G C    + +A  L  +MK     PD    + +I  F
Sbjct: 122 GGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSF 159



 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICL----------DVFVYSSLINGLCTFNRLKEAVELF 63
            Y + I+G CK   ID A+    CL          +VF Y++LI+GLC   R  +AV L+
Sbjct: 443 TYNLLIDGWCKNGCIDDAMN---CLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLW 499

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++M  +G     V +   IH                                   GLC+ 
Sbjct: 500 NEMRRRGCRPNRVAFMGFIH-----------------------------------GLCKC 524

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A     ++ E+ + P    Y  L++          A ++L +M ++  FPD    
Sbjct: 525 DKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDK 584

Query: 184 NTVI--QGFLVKNETDRASSFLK 204
           N +I     L  ++  R SS +K
Sbjct: 585 NCIIIRDAILKLSKDARTSSSVK 607



 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  QG++    T  P++   +   G+F     +    +D   L+  V+S+++    + G+
Sbjct: 1   MRDQGLSFSKYTLTPVLQ-VYCNAGKFDEALNVFNEIQDHGWLDAYVFSILVLSFSKWGQ 59

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +++ + ++++ E+       T+  LI+G  K+  + +  +L  +M++ G  PD + ++ 
Sbjct: 60  VDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDV 119

Query: 186 VIQGFLVKNETDRASSF 202
           +I GF    + D+A S 
Sbjct: 120 LIGGFCSNKKLDKALSL 136



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            + +LI+G    +R+ + V+LF KM   G++ ++  Y+ LI      +    A++L   +
Sbjct: 81  TFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEM 140

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +  K + +I V S +I      G+  +  +  + L +  +    +  N +++ L   G+I
Sbjct: 141 KMLKIQPDIGVVSKLISSFPEEGKLIDILE--ETLEDMNIETQTLLCNSVLSSLVNSGLI 198

Query: 162 MEADKLLVQM--------------KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            +A  LL  M              +++   P++ SF+ VI G +   + D A
Sbjct: 199 DKACCLLRNMMGNGDDDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLA 250



 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 4/171 (2%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMA 96
           LD +V+S L+     + ++ ++ E  +KM  Q       T+  LIH  + KQ R    + 
Sbjct: 42  LDAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFCNLIH-GFVKQSRVDKGVQ 100

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           L   +++     +I +Y ++I G C   + ++A     ++    + P +   + LI+   
Sbjct: 101 LFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFP 160

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++G ++  D L   +++      +   N+V+   +     D+A   L+  M
Sbjct: 161 EEGKLI--DILEETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMM 209


>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLFKR 182



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALXKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  I+G+CK  ++       D     G   +  +Y +LI+G C   +L  A E+F
Sbjct: 610 NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVF 669

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   G    + TY  LI   ++ +    A+ +L  +       N+  Y+ +IDGLCR+
Sbjct: 670 FRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRI 729

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  ++A K L  + ++G  P VVTY  LI+GL K G +  + +L  QM  +GC P+  ++
Sbjct: 730 GECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTY 789

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I         D A S L +
Sbjct: 790 RVLINHCCAAGLLDEAHSLLSE 811



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   I+G CK+ ++D+A        K G    V  Y+SLI+ +    RL  A+++ 
Sbjct: 645 NHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVL 704

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M+    T  +VTY  +I D   + G    A+ LL  +E+     N+  Y+ +IDGL +
Sbjct: 705 SQMLESSCTPNVVTYTAMI-DGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGK 763

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ + + +   Q+  +G  P  VTY +LIN  C  G++ EA  LL +MK+         
Sbjct: 764 SGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQG 823

Query: 183 FNTVIQGF 190
           + +V+QGF
Sbjct: 824 YCSVVQGF 831



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA----------------QGITAEL 75
           +  G   +   YS+L++GLC     ++A E++ KM+                   I   +
Sbjct: 552 VDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNV 611

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           VTY  LI    +      A  LL  +  +  E N  +Y  +IDG C+VG+ + A++   +
Sbjct: 612 VTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFR 671

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +S+ G +P V TY  LI+ + K   +  A K+L QM E  C P+  ++  +I G     E
Sbjct: 672 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGE 731

Query: 196 TDRASSFLK 204
             +A   L 
Sbjct: 732 CQKALKLLS 740



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 12  FHVYGIRINGMCKIREIDS----AIKKGICLDVFVYSSLING---------LCTFNRLKE 58
           + VY I I  +C   E+ S    A+ + +  ++   S ++N          LC   +  +
Sbjct: 379 YVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDK 438

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A ++   M+ +G   +  TY+ +I    E      A  L Q ++      ++  Y+++ID
Sbjct: 439 AFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILID 498

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+VG  E+AR   D++   G  P VVTY  L++   K   + +A  +  +M + GC P
Sbjct: 499 SFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAP 558

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ +++ ++ G     E+ +A     K
Sbjct: 559 NTITYSALVDGLCKAGESQKACEVYAK 585



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 43/240 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N   Y   I+G+C+I E   A+K       +G   +V  Y+SLI+GL    +
Sbjct: 707 MLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD--------------------NWEK--QGRFS 93
           +  +++LF +M+ QG     VTY  LI+                      W K  QG  S
Sbjct: 767 VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCS 826

Query: 94  -----------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA---RKKLDQLSEK 139
                      ++ LL+ LE         VY L+ID   + GR E+A    K++ ++S  
Sbjct: 827 VVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSS 886

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +    TY  LI  LC    + +A +L  ++  KG  P+ ++F  +I+G +  N+ + A
Sbjct: 887 LNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEA 946



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y I I+  CK+  I+ A          G    V  Y++L++      ++ +A ++F
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGR-------FSAMA----------LLQTLERDKY 106
            +MV  G     +TY+ L+ D   K G        ++ M             +    D  
Sbjct: 549 HRMVDAGCAPNTITYSALV-DGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSI 607

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             N+  Y  +IDGLC+  +  +A++ LD +S  G  P  + Y+ LI+G CK G +  A +
Sbjct: 608 APNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQE 667

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  +M + G  P   ++ ++I         D A   L +
Sbjct: 668 VFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQ 706



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K+GR+S   ++  +ER+ ++L+  + + +I GL     ++EA   L ++     +P VVT
Sbjct: 254 KEGRWSDALVM--IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVT 311

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y  L+ G  KK  +    +++  M  +GC P+ + FN+++  +    +   A   L +
Sbjct: 312 YRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNR 369



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTF-----NRLK 57
           +  Q    N+  Y + IN  C    +D A      +    +   + G C+       +  
Sbjct: 777 MITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFI 836

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNI---EVY 113
            ++ L +++ + G+ +    Y  LI D++ K GR   A+ L + +      LNI   + Y
Sbjct: 837 ASLGLLEELESHGMVSIAPVYGLLI-DSFSKAGRLEKALELHKEMMEVSSSLNITSKDTY 895

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I  LC   + E+A +   +++ KG+VP +  +  LI GL K     EA +L   M +
Sbjct: 896 TSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCD 955

Query: 174 KG 175
           +G
Sbjct: 956 EG 957



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LD  + + +I+GL   +   EA+    +M        +VTY  L+    +K+       +
Sbjct: 272 LDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRI 331

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  +  +    N  +++ ++   C    +  A K L++++  G  PG V YNI I  +C 
Sbjct: 332 ISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICS 391

Query: 158 KGMIMEADKLLVQMKEK 174
              +   D  L+ + EK
Sbjct: 392 GEELPSPD--LLALAEK 406



 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           LL+ +  D  E+   + ++++   CR G W +A ++L +L + G  P   TYN L+  L 
Sbjct: 159 LLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLA 218

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             G +    ++  +M E G   D  +     Q  
Sbjct: 219 TAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQAL 252


>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           +++  +  K +   Y   +NG C++R++ +A        K G+  D   Y++LI+G C  
Sbjct: 371 WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKE 430

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEV 112
             L  A+E+  +M  +G+  + VTY  LI     K GR   A  +L  +     + +   
Sbjct: 431 GELDTAMEMKQEMSDEGVALDDVTYTALI-SGLSKAGRSVDAERILCEMMEAGLQPDNTT 489

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++VID  C+ G  +   K L ++  KG  PG+VTYN+++NG C  G +  AD LL  M 
Sbjct: 490 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAML 549

Query: 173 EKGCFPDSTSFNTVIQG 189
             G  P+  ++N ++ G
Sbjct: 550 NIGVCPNDITYNILLDG 566



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 42/214 (19%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM----- 66
           ++GMCK  ++++A        K GI  DV+ Y + I GLC   R+++A+E+F++M     
Sbjct: 284 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGL 343

Query: 67  ------------------------------VAQGITAELVTYNPLIHDNWEKQGRFSAMA 96
                                           +G+ A+LV YN L++     +   +A  
Sbjct: 344 NPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAND 403

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
           +++ + +D  + +   Y+ +IDG C+ G  + A +   ++S++G+    VTY  LI+GL 
Sbjct: 404 IVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLS 463

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K G  ++A+++L +M E G  PD+T++  VI  F
Sbjct: 464 KAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAF 497



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N  V    I+  CK  ++ + ++       +G+  D+  Y++L+NG C   
Sbjct: 337 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 396

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            +K A ++ ++M   G+  + VTY  LI D   K+G   +AM + Q +  +   L+   Y
Sbjct: 397 DMKAANDIVEEMRKDGLKPDKVTYTTLI-DGCCKEGELDTAMEMKQEMSDEGVALDDVTY 455

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL + GR  +A + L ++ E GL P   TY ++I+  CK G +    K L +M+ 
Sbjct: 456 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQN 515

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  P   ++N V+ GF
Sbjct: 516 KGKNPGIVTYNVVMNGF 532



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+D+A++       +G+ LD   Y++LI+GL    R  +A  +  +M
Sbjct: 419 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 478

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +  G+  +  TY  ++ D + K G   +    L+ ++       I  Y++V++G C +G+
Sbjct: 479 MEAGLQPDNTTYT-MVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 537

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+ +   G+ P  +TYNIL++G CK G + + ++L      KG   D   + +
Sbjct: 538 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYTS 594

Query: 186 VIQGFLVK 193
           +I  F+ K
Sbjct: 595 LINEFVKK 602



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  +   ++ L+  +    +L  A  +FD+M+ +G+   +VT+N L+    +    
Sbjct: 234 LDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDL 293

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            +A AL   + +     ++  Y   I GLC+ GR ++A +  +++ E+GL P  V    L
Sbjct: 294 NNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL 353

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+  CK+G +    +L  +M  +G   D  ++N ++ GF
Sbjct: 354 IDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 392



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 19/193 (9%)

Query: 17  IRINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           IR   +   R + D  +++G+   V  +++L++G+C  + L  A  L   M   GI  ++
Sbjct: 253 IRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDV 312

Query: 76  VTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG--------RW 126
            TY   I     K GR   AM + + +       N  V + +ID  C+ G        RW
Sbjct: 313 YTYGAFIQ-GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRW 371

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E        ++ +G+   +V YN L+NG C+   +  A+ ++ +M++ G  PD  ++ T+
Sbjct: 372 E--------MATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 423

Query: 187 IQGFLVKNETDRA 199
           I G   + E D A
Sbjct: 424 IDGCCKEGELDTA 436



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+++GI + +  +S L+N L +   + EA   +  ++  G+  E   +N L+ D      
Sbjct: 201 ALRRGIRVPMPAWSDLMNRLPS---VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGK 257

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             SA  +   + R   +  +  ++ ++ G+C+      A      +++ G+ P V TY  
Sbjct: 258 LASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGA 317

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            I GLCK G I +A ++  +M E+G  P++    T+I  
Sbjct: 318 FIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 356


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 114/200 (57%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G C+ + ++ A       +  G+  +V  +S+LI G+C   +   A ELF
Sbjct: 362 NIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELF 421

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M   G    L T   ++   ++      AM+L + LE+  ++LNI +Y++++DG+C  
Sbjct: 422 LVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSS 481

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  +A +    LS KG+   VVTYNI+I GLCK+G++ +A+ LL++M+E GC P+  ++
Sbjct: 482 GKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTY 541

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N  +QG L + +  +++ +L
Sbjct: 542 NVFVQGLLRRYQISKSTKYL 561



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 7/200 (3%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K   H   I IN +C++         +    K G+   +  +++++NGLC    + +A+ 
Sbjct: 115 KPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIR 174

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             D +   G  ++  T   + +   +     +A++ L+ +E     L++  YS V+DGLC
Sbjct: 175 FVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLC 234

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G   EA     Q++ KG+ P + TYN LI+GLC      EA  LL  M  KG  PD  
Sbjct: 235 KDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQ 294

Query: 182 SFNTVIQGFLVKNETDRASS 201
           +FN +   F       RA S
Sbjct: 295 TFNVIAGRFFKTGMISRAKS 314



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 17/213 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           L +  ++ + +  G   NG+CK+    +A+       +K   LDV  YS +++GLC    
Sbjct: 179 LKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGM 238

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNI 110
           + EA+ LF +M  +GI  +L TYN LIH     D W++     A  LL  + R     ++
Sbjct: 239 VFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKE-----AAPLLANMMRKGIMPDV 293

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           + ++++     + G    A+     +   G+   VVTY  +I   C    + +A ++   
Sbjct: 294 QTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDL 353

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           M  KGC P+  ++ ++I G+      ++A  FL
Sbjct: 354 MISKGCLPNIVTYTSLIHGWCETKNMNKAMYFL 386



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 44/235 (18%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+CK   +  A+        KGI  D+F Y+ LI+GLC F+R KEA  L   M
Sbjct: 225 AYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANM 284

Query: 67  VAQGITAELVTYNPLI-------------------------HDNWEKQGRFSAMALLQTL 101
           + +GI  ++ T+N +                          HD         A  +L  +
Sbjct: 285 MRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQM 344

Query: 102 ERDKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            +D  E+           NI  Y+ +I G C      +A   L ++   GL P VVT++ 
Sbjct: 345 -KDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWST 403

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI G+CK G  + A +L + M + G  P+  +   ++ G    N    A S  ++
Sbjct: 404 LIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRE 458



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 35/209 (16%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI  DV  Y+S+I   C  N++K+A+E+FD M+++G    +VTY  LIH   E +  
Sbjct: 320 VHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNM 379

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM  L  +  +  + N+  +S +I G+C+ G+   A++    + + G +P + T  I+
Sbjct: 380 NKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAII 439

Query: 152 INGL-----------------------------------CKKGMIMEADKLLVQMKEKGC 176
           ++GL                                   C  G + +A +L   +  KG 
Sbjct: 440 LDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGV 499

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             D  ++N +I+G   +   D A   L K
Sbjct: 500 KIDVVTYNIMIKGLCKEGLLDDAEDLLMK 528



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   V   + +IN LC  +       +   M   G+   +VT+N +++    +     A
Sbjct: 113 GVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQA 172

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +  +  L+   YE +      + +GLC+VG    A   L ++ EK     V  Y+ +++G
Sbjct: 173 IRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDG 232

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           LCK GM+ EA  L  QM  KG  PD  ++N +I G    +    A+  L   M
Sbjct: 233 LCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMM 285



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A++ + KMV       +  +N L     + +   +A++L++ +     +  +   ++VI+
Sbjct: 67  ALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVIN 126

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LCR+         L  + + G+ P +VT+N ++NGLC +G + +A + +  +K+ G   
Sbjct: 127 CLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYES 186

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           DS +   +  G      +  A S+LKK
Sbjct: 187 DSYTCGAITNGLCKVGHSSAALSYLKK 213


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----IRE---IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++  +R       Y + ++  C+    +R    I   +KKGI   V +Y++LI+GLC+ +
Sbjct: 176 NMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSES 235

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L EA  +F +M   G+   L TYN L+    +      A+ L Q +  D  + N+  + 
Sbjct: 236 KLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFG 295

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++ID LC+V     AR+   Q+++ G+VP VV +N LI+G  K G   EA  LL++M++ 
Sbjct: 296 ILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKF 355

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  +++ +I+        + A   LK+
Sbjct: 356 KISPDVFTYSILIKNACRLGTVEEADDILKR 386



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y + ++G CK   +  A+         G+  +V  +  LI+ LC    L  A   F
Sbjct: 255 NLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFF 314

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G+   +V +N LI D + K G  S A  LL  +E+ K   ++  YS++I   CR
Sbjct: 315 VQMAKFGVVPNVVVFNSLI-DGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACR 373

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG------MIMEADKLLVQMKEKGC 176
           +G  EEA   L ++ ++G+    V YN LI+G CK+G       I +A K    M+  G 
Sbjct: 374 LGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGL 433

Query: 177 FPDSTSFNTVIQGFL 191
            PD+ ++  ++QG L
Sbjct: 434 RPDALAYAVMLQGHL 448



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 19  INGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG+ K    D       + + + +   V  Y+ L++  C    +  A  L  +MV +GI
Sbjct: 158 LNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGI 217

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +V Y  LIH    +     A ++ + ++      N+  Y++++DG C+    ++A  
Sbjct: 218 EPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALH 277

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + + GL P VVT+ ILI+ LCK   ++ A +  VQM + G  P+   FN++I G+ 
Sbjct: 278 LYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYS 337

Query: 192 VKNETDRASSFL 203
                  A+  L
Sbjct: 338 KAGNCSEATDLL 349



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           K N  V+G+ I    ++  +D A+    K G    V   ++L+NGL   +      EL++
Sbjct: 116 KFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQACNALLNGLLKKSSFDIMWELYN 175

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            MV++ +   +VTYN L+     +     A +L+  + +   E  + +Y+ +I GLC   
Sbjct: 176 NMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSES 235

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  EA     Q+ + G+ P + TYN+L++G CK   + +A  L   M + G  P+  +F 
Sbjct: 236 KLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFG 295

Query: 185 TVIQGF 190
            +I   
Sbjct: 296 ILIDAL 301



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 53/96 (55%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           ++  + +++GL +   ++   +  + +  + L P VVTYN+L++  C++G ++ A  L+ 
Sbjct: 151 VQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLIS 210

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +M +KG  P    + T+I G   +++   A S  ++
Sbjct: 211 EMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQ 246


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           LT++  K +   Y + I G C++  I+ A++        G  L+V +YS L++ LC   +
Sbjct: 282 LTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQ 341

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + EA++L  +M A  +  +LVTY+ LIH    KQG+   A+ L + +  ++   N   +S
Sbjct: 342 VDEALQLLYEMEANNLQPDLVTYSILIH-GLCKQGKVQQAIQLYKEMCFNRIFPNSFAHS 400

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ GLC  G   +AR   D L    L P V  YNI+I+G  K G + EA +L  ++++K
Sbjct: 401 GILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDK 460

Query: 175 GCFPDSTSFNTVIQGF 190
              P   +FN++I GF
Sbjct: 461 AITPSIVTFNSLIYGF 476



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 96/175 (54%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           DS I   +  DV +Y+ +I+G      ++EAV L+ ++  + IT  +VT+N LI+   + 
Sbjct: 420 DSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKN 479

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A  LL++++    E +   Y+ +++  C  G   +  + L +++ K + P VVTY
Sbjct: 480 RKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTY 539

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++I GLCK+  + E+ +LL  M+ KG  PD  ++NT+IQ F    +  +A   L
Sbjct: 540 TVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELL 594



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           DL    F+ N  +Y + ++ +CK  ++D A++         +  D+  YS LI+GLC   
Sbjct: 316 DLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQG 375

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A++L+ +M    I      ++ ++    EK     A     +L       ++ +Y+
Sbjct: 376 KVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYN 435

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++IDG  ++G  EEA +   +L +K + P +VT+N LI G CK   ++EA +LL  +K  
Sbjct: 436 IMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLH 495

Query: 175 GCFPDSTSFNTVIQGF 190
           G  P + ++ T++  +
Sbjct: 496 GLEPSAVTYTTLMNAY 511



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 8/184 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G+     ++ A+       K+G+  D+  Y  +  G      +  A E+  KM+
Sbjct: 223 YNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKML 282

Query: 68  A-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  +LVTY  LI  + +      A+ L + L    ++LN+ +YS+++  LC+ G+ 
Sbjct: 283 TDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQV 342

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA + L ++    L P +VTY+ILI+GLCK+G + +A +L  +M     FP+S + + +
Sbjct: 343 DEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGI 402

Query: 187 IQGF 190
           ++G 
Sbjct: 403 LKGL 406



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGICLD-----VFVYSSLINGLCTF 53
           +++     + +   Y I I+G+CK  ++  AI+  K +C +      F +S ++ GLC  
Sbjct: 350 YEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEK 409

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEV 112
             L +A   FD ++   +  ++  YN +I D + K G       L    RDK    +I  
Sbjct: 410 GMLSDARMYFDSLIMSNLRPDVTLYNIMI-DGYVKLGDVEEAVRLYKRLRDKAITPSIVT 468

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ +I G C+  +  EAR+ L+ +   GL P  VTY  L+N  C++G I +  +LL++M 
Sbjct: 469 FNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMN 528

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            K   P   ++  VI+G   + + + +   L+
Sbjct: 529 LKDIEPTVVTYTVVIKGLCKQRKLEESVQLLE 560



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 43/242 (17%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           FD L     + +  +Y I I+G  K+ +++ A++       K I   +  ++SLI G C 
Sbjct: 419 FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCK 478

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++ EA  L + +   G+    VTY  L++   E+        LL  +     E  +  
Sbjct: 479 NRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVT 538

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV-------------------------- 146
           Y++VI GLC+  + EE+ + L+ +  KGL P  +                          
Sbjct: 539 YTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDML 598

Query: 147 ---------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
                    TYN+LI+GLC+ G + +AD++LV ++++       ++ T+I+   VK +  
Sbjct: 599 IHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQ 658

Query: 198 RA 199
           RA
Sbjct: 659 RA 660



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K GI  D + Y+ LI+GL     ++EA+EL + M  QG+  ++VTY  ++   +   G 
Sbjct: 212 LKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYK-IVAKGFHLLGL 270

Query: 92  FS-AMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
            S A  ++Q +  D+  + ++  Y+++I G C++G  EEA +    L   G    V+ Y+
Sbjct: 271 MSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYS 330

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +L++ LCK+G + EA +LL +M+     PD  +++ +I G   + +  +A    K+
Sbjct: 331 VLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKE 386



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + I G+CK R+++ +++       KG+  D   Y+++I   C    +++A EL D M+
Sbjct: 539 YTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDML 598

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              +     TYN LI D   + G    A  +L +L+     L    Y+ +I   C  G  
Sbjct: 599 IHNLEPTPATYNVLI-DGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDA 657

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A K   Q+ EKG    +  Y+ +IN LCK+ +I EA      M   G  PD   F  +
Sbjct: 658 QRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMM 717

Query: 187 IQGF 190
           +  F
Sbjct: 718 LNAF 721



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K I   V  Y+ +I GLC   +L+E+V+L + M A+G+  + +TYN +I    + +    
Sbjct: 530 KDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRK 589

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  LL  +     E     Y+++IDGLCR G  E+A + L  L ++ +    V Y  +I 
Sbjct: 590 AFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIK 649

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             C KG    A K+  QM EKG       ++ VI
Sbjct: 650 AHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 6/196 (3%)

Query: 12  FHVYGIRINGMCKIREIDSAI--KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           FH+ G+    M   REI   +   +G+  D+  Y+ LI G C    ++EA+ L   +++ 
Sbjct: 265 FHLLGL----MSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSS 320

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G    ++ Y+ L+    ++     A+ LL  +E +  + ++  YS++I GLC+ G+ ++A
Sbjct: 321 GFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQA 380

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            +   ++    + P    ++ ++ GLC+KGM+ +A      +      PD T +N +I G
Sbjct: 381 IQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDG 440

Query: 190 FLVKNETDRASSFLKK 205
           ++   + + A    K+
Sbjct: 441 YVKLGDVEEAVRLYKR 456



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD------NWEKQGRFSAMALLQTLERDKYELN 109
           + +A+ +  KM  Q +   + TYN L+++       W+           Q+         
Sbjct: 99  VHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTS----- 153

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
               S+++DGLC   R+ +A   L Q   K   P VV++N +++  CK G+   A     
Sbjct: 154 ----SIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFC 209

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            M + G  PD+ S+N +I G +V    + A
Sbjct: 210 MMLKYGILPDTYSYNILIHGLIVAGSMEEA 239



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
           T +    + +I D    Q RF  A+  L+  +  ++  ++  ++ ++   C++G  + A+
Sbjct: 146 TPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAK 205

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
                + + G++P   +YNILI+GL   G + EA +L   M+++G  PD  ++  V +GF
Sbjct: 206 SFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGF 265



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ LI+GLC +  +++A  +   +  + I    V Y  +I  +  K     A+ +   + 
Sbjct: 609 YNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMV 668

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              +E++I+ YS VI+ LC+     EA+     +   G+ P    + +++N   + G + 
Sbjct: 669 EKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVH 728

Query: 163 EADKLLVQMKEKGCFPD 179
              +LL  M + G   D
Sbjct: 729 SVFELLAVMIKFGLLHD 745


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +N +CK   +  A++        G   +   Y++L+ GLC    L ++++  D+++
Sbjct: 135 YTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLM 194

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   AM LL  +     + N+  Y++++ GLC+ GR E
Sbjct: 195 QKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIE 254

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA +    L  KG  P VV+YNIL+  LC +G   EA++LL +M  +   P   ++N +I
Sbjct: 255 EAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILI 314

Query: 188 QGFLVKNETDRA 199
                  + ++A
Sbjct: 315 GSLAFHGKIEQA 326



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 8   FKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           +  N   Y   + G+C        ++ +D  ++KG+  + F YSSL+        + EA+
Sbjct: 163 YPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAM 222

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            L D+++A+G    LV+YN L+     K+GR   A+ L + L    +  N+  Y++++  
Sbjct: 223 RLLDEIIAKGGQPNLVSYNVLL-TGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRS 281

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GRWEEA + L +++ +   P +VTYNILI  L   G I +A +++ +M      P 
Sbjct: 282 LCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPT 341

Query: 180 STSFNTVI 187
           +TS+N +I
Sbjct: 342 ATSYNPII 349



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 35/214 (16%)

Query: 27  EIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
            ++  +K G   DV   + L+  LC  N++K+A+ + + M++ GI  +  +Y  L++   
Sbjct: 84  HLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLC 143

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV---- 142
           ++     AM L++ +E   Y  N   Y+ ++ GLC  G   ++ + LD+L +KGLV    
Sbjct: 144 KRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAF 203

Query: 143 -------------------------------PGVVTYNILINGLCKKGMIMEADKLLVQM 171
                                          P +V+YN+L+ GLCK+G I EA +L   +
Sbjct: 204 TYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNL 263

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             KG  P+  S+N +++    +   + A+  L +
Sbjct: 264 PSKGFSPNVVSYNILLRSLCYEGRWEEANELLAE 297



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ +I  LC   +++  V   D+M+    +    T+N +    +E + +  A +L+Q+L 
Sbjct: 345 YNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQ-EAFSLIQSLG 403

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
             +     + Y  V+  LC+ G    A   L ++++ G  P   TY+ LI GLC +GM+ 
Sbjct: 404 NKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLY 463

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           EA ++   ++E    PD  +FN +I GF   + TD
Sbjct: 464 EAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTD 498



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 16/209 (7%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           FK     Y   I  +CK  ++++ +    CLD  ++        TFN +  AV  ++  V
Sbjct: 338 FKPTATSYNPIIARLCKEGKVEAVVN---CLDQMIFGRCSPNEGTFNAI--AVLCYEGKV 392

Query: 68  AQG---ITAELVTYNPLIHDNWE--------KQGRFSAMALLQTLERDKYELNIEVYSLV 116
            +    I +     N  IHD ++        K   + A  LL  + +  +  +   YS +
Sbjct: 393 QEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSL 452

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I GLC  G   EA +    L E    P +  +N LI G CK      + ++   M EKG 
Sbjct: 453 IRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGY 512

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P  T++  +++G + + E + A+  L++
Sbjct: 513 TPSETTYTILVEGIIHEEEKELAAEVLRE 541



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y  +++ LC       A  L  +M   G T +  TY+ LI     +   + AM + + LE
Sbjct: 414 YKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLE 473

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
            D Y  +I+ ++ +I G C+  R + + +  + + EKG  P   TY IL+ G+  +    
Sbjct: 474 EDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKE 533

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQ 188
            A ++L ++  +     ST    ++Q
Sbjct: 534 LAAEVLRELHLRQVMSQSTVERLIMQ 559



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           ++   L+ D LC+  + ++A + ++ +   G++P   +Y  L+N LCK+G +  A +L+ 
Sbjct: 98  VQATQLLYD-LCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVE 156

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +M++ G   ++ ++NT+++G  +    +++  FL + M
Sbjct: 157 KMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLM 194


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  ++D A       ++KG+  +   +++LI+G C   +L  A+E++
Sbjct: 205 DVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIY 264

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            ++++QG++ +L+TYN LI+   +K        L+  +     + +   Y+ +IDG C+ 
Sbjct: 265 KQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A +   ++ E+ +    V Y  LI+GLCK+G  ++A+K+L +M   G  PDS ++
Sbjct: 325 GDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTY 384

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             V+  F    + +  S  LK+
Sbjct: 385 TIVMNEFCKNGDVNTGSKLLKE 406



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  EI       D+  K G+   V  +++L+NG     
Sbjct: 126 EILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMG 185

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L + M A G   ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 186 ILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFT 245

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G+ + A +   Q+  +GL P ++TYN LI G CKKG + +   L+ +M  K
Sbjct: 246 TLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMK 305

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G   + + + A  + KK
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETAFEYRKK 336



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   +   I+G CK  ++D A++       +G+  D+  Y++LI G C   
Sbjct: 231 EMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKG 290

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            LK+  +L D+M  +G+  + +TY  LI  + ++    +A    + +  +   L+  VY+
Sbjct: 291 DLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYT 350

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I GLC+ GR  +A K L ++   GL P   TY I++N  CK G +    KLL +M+  
Sbjct: 351 ALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRD 410

Query: 175 GCFP 178
           G  P
Sbjct: 411 GHVP 414



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-AL 97
           D++V+S LI        L++A+E F             T   ++ D+  K   F  +   
Sbjct: 65  DIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVL-DHLMKLKYFKLVWGF 123

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV++N L+NG  K
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIK 183

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G++ E  +L   M   G  PD  +++ +I G   +++ D A
Sbjct: 184 MGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEA 225



 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITA-----------ELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A           ++  ++ LI  
Sbjct: 16  YCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLITA 75

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V+D L ++  ++       ++ E G    
Sbjct: 76  YLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPAS 135

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +  +NIL++  CK+G I  A  +   + + G  P   SFNT++ G++
Sbjct: 136 LYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYI 182


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y  RI G  K+ +   A K       KG   DV  Y+  +NGLC    L+EA EL  KM
Sbjct: 484 AYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKM 543

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   + VTY   +H + E         +   +        +  Y+++I      GR 
Sbjct: 544 IRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRL 603

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A     ++ EKG+VP V+TYN+LING CK   + +A K  ++M+EKG FP+  ++  +
Sbjct: 604 DWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTIL 663

Query: 187 I 187
           I
Sbjct: 664 I 664



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 9/195 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y + +NG+CK+  ++ A       I+ G   D   Y+S ++      
Sbjct: 507 EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENG 566

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L+E  E+F  M+++G T  +VTY  LIH +    GR   AMA    ++      N+  Y
Sbjct: 567 HLREGREIFYDMLSRGQTPTVVTYTVLIHAH-ALNGRLDWAMAYFLEMQEKGVVPNVITY 625

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I+G C+V + ++A K   ++ EKG+ P   TY ILIN  C  G   EA +L  QM  
Sbjct: 626 NVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLG 685

Query: 174 KGCFPDSTSFNTVIQ 188
           K   PDS +   +++
Sbjct: 686 KRIRPDSCTHGALLK 700



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 44/229 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ING+ K  E+  A        K G+ +  + Y+ LI G C    L EA+ L+++M
Sbjct: 274 TFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEM 333

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS--------------------------------- 93
           V +G++  + ++N +++  + K+G+ S                                 
Sbjct: 334 VTRGVSPTVASHNTIMY-GFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGN 392

Query: 94  ---AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  LL  L       NI  Y+ +IDGLCR+G  E A K  + +  +G+ P VVTY +
Sbjct: 393 IGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTV 452

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           L+NG CK G ++ A +   +M   G  PD  ++   I G L   +T +A
Sbjct: 453 LVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKA 501



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 10/211 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L E RF+    N   Y   I+G+C++ ++++A+K       +GI  DV  Y+ L+NG C 
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACK 459

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
              +  A E FD+M+  G+  +   Y   I    +      A  L + +    +  ++  
Sbjct: 460 LGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVIT 519

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++ ++GLC++G  EEA + L ++   G VP  VTY   ++   + G + E  ++   M 
Sbjct: 520 YNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDML 579

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +G  P   ++  +I    +    D A ++ 
Sbjct: 580 SRGQTPTVVTYTVLIHAHALNGRLDWAMAYF 610



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 83/156 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   V  Y+++++  C    ++ A++L  KM  +G     VT+N LI+   +K     A
Sbjct: 232 GIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQA 291

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L+Q + +    ++   Y+ +I G C+ G   EA    +++  +G+ P V ++N ++ G
Sbjct: 292 KGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYG 351

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK+G + +A + L  M +K   PD  S+NT+I GF
Sbjct: 352 FCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGF 387



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 37/202 (18%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           +++   +KK +  D+  Y++LI G C    + EA  L D++  + ++  +VTYN LI D 
Sbjct: 363 QQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLI-DG 421

Query: 86  WEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE------ 138
             + G   +A+ L + +       ++  Y+++++G C++G    A++  D++        
Sbjct: 422 LCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPD 481

Query: 139 -----------------------------KGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
                                        KG  P V+TYN+ +NGLCK G + EA +LL 
Sbjct: 482 QFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQ 541

Query: 170 QMKEKGCFPDSTSFNTVIQGFL 191
           +M   G  PD  ++ + +   +
Sbjct: 542 KMIRDGHVPDHVTYTSFMHAHM 563



 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 6/159 (3%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-ERDKYELNIEV 112
           N L +A+E++  M   GI   + TYN ++H   +      A+ L+  + ER  Y   +  
Sbjct: 216 NLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEV-T 274

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++++I+GL + G  ++A+  + ++++ GL     TYN LI G CKKG+++EA  L  +M 
Sbjct: 275 FNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMV 334

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKNM 207
            +G  P   S NT++ GF  + +   A    S  LKKN+
Sbjct: 335 TRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNL 373



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 64/129 (49%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +F+KM+      ++   N ++    +K     A+ + + +        +  Y+ ++   C
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  + A   + ++ E+G  P  VT+N+LINGL KKG + +A  L+ +M + G      
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY 308

Query: 182 SFNTVIQGF 190
           ++N +I G+
Sbjct: 309 TYNPLICGY 317


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     N   Y   ING   + ++D A       ++ G       Y+ +I+G    N
Sbjct: 507 EMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTN 566

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ EA     KMV QG+   ++TY   I D   K GR S A  +   +++  Y  N+  Y
Sbjct: 567 RISEAENFCGKMVKQGLLPNVITYTSFI-DGLCKNGRTSLAFKIFHEMKKRDYFPNLCTY 625

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDGLC+ G+ E+A + LD     G  P V TY  L+ GLC KG   EAD+L+  MK+
Sbjct: 626 SSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKK 681

Query: 174 KGCFPDSTSFNTVIQG 189
           KG  P    +  ++ G
Sbjct: 682 KGLQPSEEIYRALLVG 697



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ +I G C+   +++A  +FD+M+  G +  ++TYN +IH  +++    +AM LL+ +
Sbjct: 414 TYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMM 473

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           + +  +L+   Y+ +I G  R G+ E A    +++ E G+ P VVTYN +ING      +
Sbjct: 474 KGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKV 533

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +A  L  +M E G  P S ++N +I GF   N    A +F  K
Sbjct: 534 DDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGK 577



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 6/194 (3%)

Query: 13  HVY---GIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           H+Y   G   N M   R ++     G+ LD + Y++LI+G     +L+ A  LF++MV  
Sbjct: 455 HIYFKQGYMNNAM---RLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEH 511

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           GI+  +VTYN +I+          A+AL   +       +   Y+++I G  +  R  EA
Sbjct: 512 GISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEA 571

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
                ++ ++GL+P V+TY   I+GLCK G    A K+  +MK++  FP+  +++++I G
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631

Query: 190 FLVKNETDRASSFL 203
              + + + A   L
Sbjct: 632 LCQEGQAEDAERLL 645



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  +   H Y I I  +C       A+K       +G   +V  Y++LI+GL    
Sbjct: 297 EMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDG 356

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           + + A+ ++ KM+A G+    VTY+ LI+  +  +GRF +A+ + + +       N E Y
Sbjct: 357 KFEVAIGVYHKMLADGLVPTAVTYSALINQLY-VEGRFETALTIFEWMLSHDSLPNTETY 415

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I G C +G  ++A    DQ+ + G  P V+TYNI+I+   K+G +  A +LL  MK 
Sbjct: 416 NVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKG 475

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G   D+ ++  +I GF    + + A S   +
Sbjct: 476 NGLKLDTWTYANLISGFSRGGKLEHAFSLFNE 507



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G CK   +D A       +K G   +   YS+LINGLC+  RL+EA+++ ++M
Sbjct: 239 TYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEM 298

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI   +  Y   I    +      A+ LL  +++     N++ Y+ +I GL R G++
Sbjct: 299 IDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKF 358

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A     ++   GLVP  VTY+ LIN L  +G    A  +   M      P++ ++N +
Sbjct: 359 EVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVI 418

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+GF       +A++   +
Sbjct: 419 IKGFCSIGYIQKATAIFDQ 437



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           G C D F Y+SLI G C    L  A E+FD+MV  G     VTY+ LI +    +GR   
Sbjct: 232 GACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALI-NGLCSEGRLEE 290

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           AM +L+ +     E  +  Y++ I  LC  GR  EA K L ++ ++G  P V TY  LI+
Sbjct: 291 AMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALIS 350

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GL + G    A  +  +M   G  P + +++ +I    V+   + A
Sbjct: 351 GLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETA 396



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  GI  ++F ++++I  LC   +++EA  +   +   G   +  TY  LI  + +    
Sbjct: 194 LNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNL 253

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  +   + +D  + N   YS +I+GLC  GR EEA   L+++ +KG+ P V  Y I 
Sbjct: 254 DLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIP 313

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I  LC  G   EA KLL +MK++GC P+  ++  +I G 
Sbjct: 314 IVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGL 352



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G  K   I  A       +K+G+  +V  Y+S I+GLC   R   A ++F +M
Sbjct: 554 TYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +     L TY+ LI D   ++G+       + L  D  E N++ Y+ ++ GLC  GR 
Sbjct: 614 KKRDYFPNLCTYSSLI-DGLCQEGQAEDA---ERLLDDGCEPNVDTYTTLVRGLCGKGRC 669

Query: 127 EEARKKLDQLSEKGLVPG--------------------------VVT---------YNIL 151
            EA + ++ + +KGL P                           +VT         Y  L
Sbjct: 670 YEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKAL 729

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I  LCK     +A  +   M +K    D   +  ++ G L + ETD +   L
Sbjct: 730 ICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELL 781



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKE 58
           ++ ++ +  N   Y   I+G+C+  + + A   +  G   +V  Y++L+ GLC   R  E
Sbjct: 612 EMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYE 671

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A +L + M  +G+      Y  L+    +     SA+ +  ++    ++  +  Y  +I 
Sbjct: 672 ADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALIC 731

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
            LC+    ++A+     + +K      V + +L++GL K+G    + +LL  M+ + C
Sbjct: 732 ALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNC 789



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           N+  ++ +I  LC  G+ +EA   +  +   G  P   TY  LI G CK G +  A ++ 
Sbjct: 201 NLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMF 260

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +M + GC P+S +++ +I G   +   + A   L++
Sbjct: 261 DRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEE 297



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 11  NFHVYGIRINGMC---KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   + G+C   +  E D  +    KKG+     +Y +L+ G C    ++ A+++F
Sbjct: 652 NVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIF 711

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D MV  G    L  Y  LI    +   R  A  + QT+ +  +  +  V+++++DGL + 
Sbjct: 712 DSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKE 771

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---KEK 174
           G  + + + L  +  +       T  +L   L   G  +E  ++  Q+   KEK
Sbjct: 772 GETDLSLELLHVMESRNCTLNFQTRVMLARELSALGCSIEIPQISKQLGIVKEK 825



 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++   G+ P + T+N +I  LC KG + EA+ ++  +   G  PD+ ++ ++I G     
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251

Query: 195 ETDRA 199
             D A
Sbjct: 252 NLDLA 256


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 21  GMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           GM K + + D  +K+G   D+  Y+ +I   C  N LKEAV+LF  M  +GI  +LVT+ 
Sbjct: 631 GMRKAQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFT 690

Query: 80  PLIHDNWEKQGR---------------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            L+  + +   +               F A+A+   ++  + + ++  Y+++IDG C+V 
Sbjct: 691 VLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVD 750

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              +A    D++ E+GL P ++TY  L++G C++G +  A  LL QM  KG  PD+ + +
Sbjct: 751 SLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMS 810

Query: 185 TVIQGFL 191
            ++ G L
Sbjct: 811 ALLHGIL 817



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+ ++    + H Y   I   CK   +  A       + KG+ ++  +  S+++ LC   
Sbjct: 328 DMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCLCELG 387

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
              E V+ F++  + G+  + V+YN ++ D   K G+   A+ LL  ++  +  +++  Y
Sbjct: 388 MHSEVVDQFNQFKSLGLFLDGVSYNNVV-DALCKLGKLEEAITLLDEMKMKQINMDVMHY 446

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C  G   +A K  +++ E G+   VVTY++L++G C+ G+  EA  LL  M+ 
Sbjct: 447 TTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQT 506

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASS 201
           +   P+S ++N V++   +  +   A +
Sbjct: 507 QKLKPNSITYNVVVESLCMGGKVKEAEA 534



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 4/166 (2%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+ LD   Y+++++ LC   +L+EA+ L D+M  + I  +++ Y  LI+    +     A
Sbjct: 403 GLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDA 462

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             + + +  +  E+++  Y +++ G CR G   EA   LD +  + L P  +TYN+++  
Sbjct: 463 FKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVES 522

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           LC  G + EA+ +   +++K       ++  +I G+   N T  A+
Sbjct: 523 LCMGGKVKEAEAVFNSIEDKSL----DNYFAMINGYCKANHTAGAA 564



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +CK+ +++ AI        K I +DV  Y++LING C    + +A ++F++M 
Sbjct: 411 YNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMR 470

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             GI  ++VTY+ L+           A+ LL  ++  K + N   Y++V++ LC  G+ +
Sbjct: 471 ENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVK 530

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           EA    + + +K L      Y  +ING CK      A KL  ++  KG    S  +N
Sbjct: 531 EAEAVFNSIEDKSLD----NYFAMINGYCKANHTAGAAKLFFRLSVKGHVKRSCCYN 583



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI-REIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAV 60
           +T   F    ++ G+ +N M  +  ++  A K   I LD++ Y+  + G C   +  +A 
Sbjct: 264 ITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAE 323

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +   M  +G+  ++  Y  LI    +      A A L  +     ++N  +   ++  L
Sbjct: 324 SVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCL 383

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C +G   E   + +Q    GL    V+YN +++ LCK G + EA  LL +MK K    D 
Sbjct: 384 CELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDV 443

Query: 181 TSFNTVIQGF 190
             + T+I G+
Sbjct: 444 MHYTTLINGY 453



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
           F +  +RF  +  +    +N + K  ++D A+       + G+  + + Y+ +I  LC  
Sbjct: 187 FQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCIN 246

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
             L+EA+ +  +M   GIT     Y   I      +       +LQ  +     L++  Y
Sbjct: 247 GSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAY 306

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++ + G C   ++++A   L  + ++G+VP +  Y  LI   CK G +++A   L +M  
Sbjct: 307 TVAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMS 366

Query: 174 KG 175
           KG
Sbjct: 367 KG 368



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           VY +L+    +     +A+++  +M  +     +   N L++   +      A+A+ + L
Sbjct: 165 VYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQL 224

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +R     N   Y++VI  LC  G  EEA   + ++ E G+ P    Y   I GLC   M 
Sbjct: 225 KRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMS 284

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
               ++L   K      D  ++   ++GF  + + D+A S L+
Sbjct: 285 DLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAESVLR 327



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 35/119 (29%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+ LI+G C  + L +A+ +FD+M+ +G+  +++TY  L                 
Sbjct: 735 DVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTAL----------------- 777

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
                             + G C+ G  + A   LDQ+S KG+ P   T + L++G+ K
Sbjct: 778 ------------------LSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLHGILK 818



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ +   K +   Y + I+G CK+  +       D  I++G+  D+  Y++L++G C   
Sbjct: 726 EMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRG 785

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH 83
            +  AV L D+M  +GI+ +  T + L+H
Sbjct: 786 DVDRAVNLLDQMSLKGISPDTRTMSALLH 814



 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 44/95 (46%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           +VY  ++     VG +++A   L Q+  +  VP +   N L+N L K   +  A  +  Q
Sbjct: 164 KVYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQ 223

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +K  G  P+  ++  VI+   +    + A   +K+
Sbjct: 224 LKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKE 258


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E+  + +   Y I+ING C+       +   D  ++K I   V  Y+SLI+     N
Sbjct: 382 EMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRN 441

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA E F K + +G+  +++ +N LI  +        A  LL+ ++  K   +   ++
Sbjct: 442 RMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFN 501

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G CR  + EEA+K LD++ E+G+ P  ++YN LI+G  K+G + +A ++  +M   
Sbjct: 502 TLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL 561

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P   ++N +IQG+    E D A   L++
Sbjct: 562 GFDPTLLTYNALIQGYSKIGEADHAEELLRE 592



 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + ++  K + + Y   I+ +CK R I+ A       ++ G+  +   Y++LI+G C    
Sbjct: 278 MKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGD 337

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A    D+M+ +GI A + TYN LIH  + ++    A  +++ +     E ++  Y++
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            I+G CR G  ++A    D++ EK + P V TY  LI+   K+  + EA++   +  ++G
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD   FN +I G  V    DRA   LK+
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKE 487



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L E     N   Y   I+G C   ++D A       + +GI   VF Y+ LI+ L    R
Sbjct: 313 LLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKR 372

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           ++EA ++  +M  +G+  ++VTYN  I+          A++L   +        +E Y+ 
Sbjct: 373 IEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTS 432

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID   +  R  EA +K  +  ++G++P ++ +N LI+G C  G I  A +LL +M    
Sbjct: 433 LIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK 492

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  +FNT++QG+  + + + A   L
Sbjct: 493 VVPDEVTFNTLMQGYCRERKVEEAKKLL 520



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 16/216 (7%)

Query: 8   FKGNFHVYGIR---------INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC 51
           F G+  VYG++         ING C   + ++A K       K +  D + Y+S I+ LC
Sbjct: 239 FIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLC 298

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
              R++EA  +  K++  G+    VTYN LI     K     A A    +       ++ 
Sbjct: 299 KERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVF 358

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+L+I  L    R EEA   + ++ EKG+ P VVTYNI ING C+ G   +A  L  +M
Sbjct: 359 TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            EK   P   ++ ++I  F  +N    A    KK++
Sbjct: 419 VEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSI 454



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  +K  I   +  ++ +IN LC   + K+A +    M   G+   +VTYN +I + +  
Sbjct: 206 EEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVI-NGYCL 264

Query: 89  QGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G+F A + + +T++    + +   Y+  I  LC+  R EEA   L +L E GLVP  VT
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVT 324

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN LI+G C KG + +A     +M  +G      ++N +I    ++   + A   +K+
Sbjct: 325 YNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKE 382



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
             V+  L++  C F +  EA+E  + M    I  +  T N L+    +      A  + +
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            + +   + +I  ++++I+ LCR G+W++A+  +  +   G+ P VVTYN +ING C +G
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               A K+   MK+K   PD  ++N+ I     +   + AS  L K
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCK 312



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 38/165 (23%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           ++E+D+A    +  D   +++L+ G C   +++EA +L D+M  +GI  + ++YN L   
Sbjct: 485 LKEMDNA---KVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTL--- 538

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                                           I G  + G  ++A +  D++   G  P 
Sbjct: 539 --------------------------------ISGYSKRGDMKDALEVFDEMLSLGFDPT 566

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           ++TYN LI G  K G    A++LL +M+ KG  PD +++  VI+ 
Sbjct: 567 LLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEA 611


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 106/193 (54%), Gaps = 9/193 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CKI +++ A       + +G+C +   Y++LI+G C   +L  A  + ++M   G 
Sbjct: 512 ISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              + TYN LIH    KQ  FS A  L + +  +K   ++  YS VI+GLC  G    A 
Sbjct: 572 RPNVQTYNVLIH-GLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLAL 630

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +++ + G +P + TY+ LI  L ++G + EA+++  ++K++G  PD  ++  +I+  
Sbjct: 631 EMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690

Query: 191 LVKNETDRASSFL 203
           ++  + DRA  FL
Sbjct: 691 VMSGKVDRAFDFL 703



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I G C   + D AI+        G   D + Y+ LI+G C  ++++ A  +F++M
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM 531

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+    VTY  LI    + +    A  +L+ ++R     N++ Y+++I GL +   +
Sbjct: 532 MDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNF 591

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +    + E+ + P VVTY+ +INGLC  G I  A ++  +M + GC P+  +++++
Sbjct: 592 SGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651

Query: 187 IQGF 190
           IQ  
Sbjct: 652 IQAL 655



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 87/158 (55%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++G+  ++ +Y+S+IN LC    +++A  + +K+   G+  +  TY  +I      +  
Sbjct: 220 LREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDL 279

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA  +   ++ +  E N   YS +I+GLC  GR  EA   + +++  G++P V T+   
Sbjct: 280 DSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAP 339

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           I  LC  G I +A K+ + MK+KGC P+  ++ ++I G
Sbjct: 340 IVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +N + +  EIDSA+       K G   +   Y+ LI G CT    ++A+ + 
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M+    T  LVTYN +I    +      A+ +L+ ++ +  + +   Y+ +I G C++
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKI 518

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + E A    +++ ++GL P  VTY  LI+G CK   +  A ++L +MK  GC P+  ++
Sbjct: 519 SKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTY 578

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +I G   +N    A    K
Sbjct: 579 NVLIHGLTKQNNFSGAEELCK 599



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 41/236 (17%)

Query: 8   FKGNFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAV 60
            + N  +Y   IN +CK   +R+ +S I    K G+  D F Y+S+I G C    L  A 
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           E+F++M  +G      TY+ LI +     GR + A+  +  + R      +  ++  I  
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLI-NGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVA 342

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-------------LCKKGMI----- 161
           LC +GR E+A K    + +KG  P V TY  LI+G             + + G++     
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVT 402

Query: 162 -----------MEADKLLV---QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
                      ME D  L+    M + GC P+++S+N +I+G+    +T++A S L
Sbjct: 403 YNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 12/214 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T        H +   I  +C +  I+ A K       KG   +V+ Y+SLI+G     
Sbjct: 323 EMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG----Q 378

Query: 55  RL-KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           R+ + A+ LF +M   G+    VTYN L++   E     SA+ +   + +     N   Y
Sbjct: 379 RVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSY 438

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G C +G  E+A   L  + +    P +VTYNI+I G C  G    A ++L  MK 
Sbjct: 439 NELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKA 498

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            GC PD  S+  +I GF   ++ + AS    + M
Sbjct: 499 NGCQPDEWSYTELISGFCKISKMELASGMFNEMM 532



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 73/150 (48%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A+   D    +G    L TY  L+    +     + M     + R+  + N+ +Y+ 
Sbjct: 174 MTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNS 233

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           VI+ LC+ G   +A   ++++ + G+ P   TY  +I G C+   +  A ++  +M E+G
Sbjct: 234 VINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEG 293

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C P++ +++T+I G       + A  F+ +
Sbjct: 294 CEPNAATYSTLINGLCNSGRVNEALDFISE 323



 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y +L++ L    R  EA  L+  MV+Q       TY   +           AM + + +
Sbjct: 774 LYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHM 833

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
              + EL++  Y  +I  LC++ R +EAR   +++  + L    + + ILINGL   G
Sbjct: 834 SDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAG 891



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 64/249 (25%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E++   +   Y   ING+C    I  A       +K G   ++  YSSLI  L    R
Sbjct: 601 MLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGR 660

Query: 56  LKEAVELFDK-----------------------------------MVAQGITAELVTYNP 80
           ++EA E+F +                                   M+  G    L TY+ 
Sbjct: 661 VEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDV 720

Query: 81  LIHDNWEKQGRFSAMALL----------QTLERD------------KYELNIEVYSLVID 118
           LI     +      +AL           Q + +D             +EL+ ++Y  ++ 
Sbjct: 721 LIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLS 780

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L R GRW EA      +  +   P   TY   +  L +   +  A  +   M ++ C  
Sbjct: 781 RLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCEL 840

Query: 179 DSTSFNTVI 187
             T +  +I
Sbjct: 841 HLTGYKELI 849


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK+ ++D A       I+ G   +  VY++LINGL   ++ ++A+ +F ++
Sbjct: 131 AYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKEL 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +  +  +VTYN LI+   + +    A  L++ +    +  ++  YSL+I GLC+  + 
Sbjct: 191 GTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKV 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q+  KG  P V  +NILI+GLC  G    A +L   M    C P+  ++NT+
Sbjct: 251 EMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTL 310

Query: 187 IQGFLVKNETDRA 199
           ++GF    +T  A
Sbjct: 311 MEGFYKGGDTRNA 323



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E   K N  VY   ING+    + + AI+       +     +  Y++LINGLC   R
Sbjct: 155 MIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGER 214

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA +L  +M+ +G    ++TY+ LI    +      A+ L   +    ++ +++++++
Sbjct: 215 FAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNI 274

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC VG+ E A +    ++     P +VTYN L+ G  K G    A  +  ++   G
Sbjct: 275 LIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNG 334

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  S+N  ++G    N    A  FL
Sbjct: 335 LLPDIISYNITLKGLCACNRISVAILFL 362



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 6/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  K   I +       + +    +V  +++++ GL     
Sbjct: 15  EMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVASFNTMMRGLFNNGE 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + E   +++ M   G   +  TY  L+H   +      ++ +L+  +++   L+   YS 
Sbjct: 75  VDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSA 134

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC++G+ ++A   L+ + E G  P    YN LINGL       +A ++  ++  + 
Sbjct: 135 MISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRH 194

Query: 176 CFPDSTSFNTVIQGF 190
           C P   ++NT+I G 
Sbjct: 195 CSPTIVTYNTLINGL 209



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ +  +   Y + I G+C+  +++ A       I KG   DV +++ LI+GLC+  
Sbjct: 224 EMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A EL+  M        LVTYN L+   ++     +A+ +   + R+    +I  Y+
Sbjct: 284 KTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNGLLPDIISYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R   A   L+    K +VP V+T
Sbjct: 344 ITLKGLCACNRISVAILFLNDAVTKNIVPTVIT 376



 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C  G    A +   +++E  + P  V YN ++NG  K G I     L   M  +G   + 
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGS-RNV 59

Query: 181 TSFNTVIQGFLVKNETDRASS 201
            SFNT+++G     E D   S
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFS 80


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I+G+CK   +  A       +  G+  D   Y+ LI+  C    L+EA ++F+ M
Sbjct: 487 TYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNM 546

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           ++ G+    VT+  +IH    +   +SA    + +  +  E N   Y+++I  LCR+GR 
Sbjct: 547 ISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRT 606

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A     ++ E+GLV    TY +LI+G CK G   +A +   +M + G  PD  +   +
Sbjct: 607 QLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKAL 666

Query: 187 IQGF 190
           ++GF
Sbjct: 667 VKGF 670



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           DL           Y IRI+G C++ +++ A        ++G   +V  Y+ L+ G     
Sbjct: 370 DLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVC 429

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L  A E FD+M+++G+  +   YN  I           A+ L + L  +    +   Y+
Sbjct: 430 SLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYN 489

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC+ G  ++A++   ++   GL P  +TY  LI+  C++G++ EA K+   M   
Sbjct: 490 ILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 549

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P + +F  +I  +  +     A  + +K
Sbjct: 550 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRK 580



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI  D   Y+ LI+GLC    LK+A EL  KMV+ G+  + +TY  LIH + E+     
Sbjct: 479 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 538

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +   +  D    +   ++++I   CR G    A     ++ E+G+ P  +TYN+LI+
Sbjct: 539 ARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIH 598

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            LC+ G    A     +M E+G   +  ++  +I G
Sbjct: 599 ALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDG 634



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   V  Y+++I+GL     ++ A   F +M A G+  +++TYN L++   +      
Sbjct: 304 EGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKE 363

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ L   L R      +  Y++ IDG CR+G  EEAR   +++ E+G +P V TY IL+ 
Sbjct: 364 ALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMK 423

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G      +  A +   +M  KG  PD  ++NT I   L+  +  RA
Sbjct: 424 GSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARA 469



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK--KGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMV 67
            Y + I G+ +  +++ A +  +G+ L      F Y+ LI GL     +K+  +L  +M 
Sbjct: 243 TYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEME 302

Query: 68  AQGITAELVTYNPLIHDNWEK------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            +GI   +VTYN +IH   +       Q +F+ M  +  L       ++  Y+ +++G C
Sbjct: 303 NEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLP------DVITYNSLLNGYC 356

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  +EA      L   GL P V+TYNI I+G C+ G + EA  L  +M E+GC P+  
Sbjct: 357 KAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVC 416

Query: 182 SFNTVIQGFL 191
           ++  +++G L
Sbjct: 417 TYTILMKGSL 426



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRING---MCKI---REI-DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    N   Y I + G   +C +   RE  D  + KG+  D F Y++ I       
Sbjct: 405 EMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILG 464

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A+EL + ++ +GI+++ VTYN LIH   +      A  L   +  +  + +   Y+
Sbjct: 465 DIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYT 524

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C  G   EARK  + +   GL+P  VT+ ++I+  C++G +  A     +M E+
Sbjct: 525 CLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEE 584

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++N +I        T  AS    +
Sbjct: 585 GVEPNEITYNVLIHALCRMGRTQLASHHFHE 615



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y+ +I GL     L+EA EL + M      A   TYNPLI     +        L   +
Sbjct: 243 TYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEM 301

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E +     +  Y+ +I GL + G  E A+ K  ++   GL+P V+TYN L+NG CK G +
Sbjct: 302 ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNL 361

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            EA  L   ++  G  P   ++N  I G+    + + A   LK+ M
Sbjct: 362 KEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEA-RILKEEM 406



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 41/202 (20%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           RE+ S    G+  DV   + ++  L    R  +   + ++M+  GI   +VTYN L+ D+
Sbjct: 158 REMAS---HGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLL-DS 213

Query: 86  WEKQGRFSAMA-LLQTLE-RDKYELNIEV-YSLVIDGLCRVGRWEEARKKLD-------- 134
           + K+GR   +A LL+ +E R    L  +V Y++VI GL R G  EEA + ++        
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 273

Query: 135 --------------------------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
                                     ++  +G++P VVTYN +I+GL + G++  A    
Sbjct: 274 SSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKF 333

Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
            +M+  G  PD  ++N+++ G+
Sbjct: 334 AEMRAMGLLPDVITYNSLLNGY 355



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK- 174
           V+  L    RW++     +++ + G+ P +VTYN L++   K+G   +   LL +M+ + 
Sbjct: 175 VLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRG 234

Query: 175 -GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            GC P+  ++N VI G   K + + A+  ++
Sbjct: 235 SGCLPNDVTYNVVITGLTRKGDLEEAAELVE 265



 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +M + G+  ++   N ++    +        A+ + + +   E +I  Y+ ++D   +
Sbjct: 157 FREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLK 216

Query: 123 VGRWEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEADKLL--VQMKEKGCFP 178
            GR ++    L ++  +G   +P  VTYN++I GL +KG + EA +L+  +++ +K    
Sbjct: 217 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA--- 273

Query: 179 DSTSFNTVIQGFLVK 193
            S ++N +I G L +
Sbjct: 274 SSFTYNPLITGLLAR 288


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D   Y  LI+G C   +L  A   F +M+  GI+    TY  +I D + K+G+   A++L
Sbjct: 476 DERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMI-DGYCKEGKIDVALSL 534

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
            + +E +    +IE Y+ +I GL +  R+ EA K   +++E+GL P  +TY  LINGLCK
Sbjct: 535 FERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCK 594

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                 A K+  +M++K C P++ ++ ++I G   + + D A
Sbjct: 595 NTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA 636



 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 12/206 (5%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           FDL    F      Y   I G C+ R++D A       +K G   +   YS+LINGLC  
Sbjct: 226 FDLCPDAF-----TYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNE 280

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R+ EA+++ ++M  +GI   + TY   I    +      A+ L++++ +     +++ Y
Sbjct: 281 GRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTY 340

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL R G+ E A     ++ ++GLVP  VTYN LIN LC +G    A K+   M+ 
Sbjct: 341 TAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEG 400

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   ++ ++N +I+G    ++ ++A
Sbjct: 401 HGTLANAQTYNQIIKGLFGMDDIEKA 426



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   +   IN +CK  ++  A+       +  +C D F Y+SLI G C   +L +A E
Sbjct: 194 KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFE 253

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           +FD+MV  G     VTY+ LI +    +GR   AM +L+ +     E  +  Y++ I  L
Sbjct: 254 VFDRMVKDGCNPNSVTYSTLI-NGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSL 312

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C +GR ++A   +  + +KG  P V TY  +I+GL + G +  A  +  +M ++G  P++
Sbjct: 313 CDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNT 372

Query: 181 TSFNTVIQ 188
            ++N +I 
Sbjct: 373 VTYNALIN 380



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  +ID A+       + G    +  Y+++I+GL   NR  EA +   KM
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKM 573

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             QG+    +TY  LI+   +      A  +   +E+     N   Y+ +I GLC+ G+ 
Sbjct: 574 TEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKV 633

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           + A    ++L+E G  P + TY+ L++GLC++G   EA +L+  MKEKG  P 
Sbjct: 634 DAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPS 682



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 83/157 (52%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+   +  ++++IN LC   +++EAV +F+K+    +  +  TY  LI  +   +    A
Sbjct: 192 GVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKA 251

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             +   + +D    N   YS +I+GLC  GR  EA   L++++EKG+ P V TY + I+ 
Sbjct: 252 FEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISS 311

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           LC  G + +A  L+  M +KGC P   ++  +I G  
Sbjct: 312 LCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLF 348



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   IN +C       A+K        G   +   Y+ +I GL   + +++A+ +F
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVF 430

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+  G +  +VTYN LI +N ++    +A   L  ++    E +   Y  +I G C+ 
Sbjct: 431 NKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKG 490

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A     ++ + G+ P   TY  +I+G CK+G I  A  L  +M+E GC     ++
Sbjct: 491 GKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETY 550

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           N +I G    N    A  F  K
Sbjct: 551 NAIISGLSKGNRFSEAEKFCAK 572



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 11  NFHVYGIRINGMCKIREIDSA---IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           N H Y   I G+C+  ++D+A    + G    +  YS+L++GLC   R  EA +L + M 
Sbjct: 616 NAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMK 675

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G++  +  Y  L+  + +      A+ +   +    ++ ++ +Y ++I  LC V R E
Sbjct: 676 EKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAE 735

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           EA      L +K     ++ + +L++GL ++G      K L  M+ + C P   ++
Sbjct: 736 EALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTY 791



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     +   Y   I+G+ K      A K       +G+  +   Y+SLINGLC    
Sbjct: 538 MEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTA 597

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A ++F +M  +       TY  LI+    ++G+  A    + L  +  E  I+ YS 
Sbjct: 598 TNLAFKIFHEMEKKNCLPNAHTYTSLIY-GLCQEGKVDAA---ERLTENGCEPTIDTYST 653

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLCR GR  EA + ++ + EKGL P +  Y  L+   CK   +  A ++   M  KG
Sbjct: 654 LVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKG 713

Query: 176 CFP 178
             P
Sbjct: 714 FQP 716



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICL-DVFVYSSLINGLCTFNR 55
           +TEQ  + N   Y   ING+CK    + A K      K  CL +   Y+SLI GLC   +
Sbjct: 573 MTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +  A    +++   G    + TY+ L+     ++GR + A  L++ ++      ++E+Y 
Sbjct: 633 VDAA----ERLTENGCEPTIDTYSTLV-SGLCREGRSNEASQLVENMKEKGLSPSMEIYC 687

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++   C+  + + A +  + ++ KG  P +  Y +LI  LC      EA  +   + +K
Sbjct: 688 SLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKK 747

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
               D   +  ++ G L + ++D    FL
Sbjct: 748 QWNSDLIVWTVLVDGLLQEGDSDLCMKFL 776



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 120 LCRVGRWE---EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           L ++G+++    A+    Q+   G+ P ++T+N +IN LCKKG + EA  +  ++ +   
Sbjct: 169 LLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDL 228

Query: 177 FPDSTSFNTVIQGFLVKNETDRA 199
            PD+ ++ ++I G     + D+A
Sbjct: 229 CPDAFTYTSLILGHCRNRKLDKA 251



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 42/179 (23%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    +  +Y   +   CK  ++D A++       KG    +F+Y  LI  LC  +
Sbjct: 673 NMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVS 732

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R +EA+ +F                                   Q+L + ++  ++ V++
Sbjct: 733 RAEEALNIF-----------------------------------QSLLKKQWNSDLIVWT 757

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++DGL + G  +   K L  +  +   P + TY IL   L K G  +  D++  +++E
Sbjct: 758 VLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGTDQIGNRLRE 816


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%)

Query: 17  IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ++ +CK   +  A+K       +G   DV  Y++++  LC   +  EAVEL+++MV +
Sbjct: 271 IYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRR 330

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           G+  ++V    LI    +      A  L   +     ELN+ +Y+ +I G  R G   +A
Sbjct: 331 GLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKA 390

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQ 188
            K +  +   G  P VVTYNI +N  C  GMI EA+KL+ +M+  G   PD  S+N +++
Sbjct: 391 FKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLK 450

Query: 189 GFLVKNETDRASSFLKKNM 207
           G    ++ DRA  F+  +M
Sbjct: 451 GLCKAHQLDRAFGFVSDHM 469



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 102/195 (52%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           + Y   + G+CK  ++D A           G C D+   + LI+  C   ++  A++LF 
Sbjct: 443 YSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFC-DIVSCNILIDAFCKAKKVSSALKLFK 501

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M  +GI A+ VTY  LI+  +     + A  + + + + +   N+ +Y++++  LC+ G
Sbjct: 502 EMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAG 561

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           ++E+A+K   Q+ +K + P ++T+N LI  L K    +EA  L   M  +G  PDS +F 
Sbjct: 562 QFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFR 621

Query: 185 TVIQGFLVKNETDRA 199
            +I G L + +  +A
Sbjct: 622 YLISGLLEEGKATQA 636



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 15  YGIRINGMCK---IREIDSAIKK----GIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y IR+N  C    I+E +  I++    GI   D + Y+ ++ GLC  ++L  A       
Sbjct: 409 YNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDH 468

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++V+ N LI    + +   SA+ L + +     + +   Y  +I+GL  VG +
Sbjct: 469 MEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYY 528

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +  +Q+ +  +VP V  YNI+++ LCK G   +A K+ +QM +K   PD  +FNT+
Sbjct: 529 YLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTL 588

Query: 187 I 187
           I
Sbjct: 589 I 589



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++G+  D+     LI GLC  +++ EA EL  +M++  +   +  YN LI         
Sbjct: 328 VRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSI 387

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNI 150
             A  ++  +  +  E ++  Y++ ++  C  G  +EA K ++++   G+V P   +YN 
Sbjct: 388 NKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQ 447

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           ++ GLCK   +  A   +    E G F D  S N +I  F    +   A    K+
Sbjct: 448 MLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKE 502



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 15/199 (7%)

Query: 1   FDLTEQRF-----KG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSS 45
           FDL E+ +     KG       Y   I+ +C+   I+          K G   D++  + 
Sbjct: 212 FDLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNI 271

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
            ++ LC  NRL +A++  + M  +G   ++VTY  ++    + +    A+ L + + R  
Sbjct: 272 YVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRG 331

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            + +I    ++I GLC+  + +EA +   ++    L   V  YN LI+G  + G I +A 
Sbjct: 332 LKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAF 391

Query: 166 KLLVQMKEKGCFPDSTSFN 184
           K++  M+  GC PD  ++N
Sbjct: 392 KIISVMRTNGCEPDVVTYN 410



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 35/169 (20%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+ KG CL  F YS  I+ LC      E +EL ++++A                + +K G
Sbjct: 222 ALDKGFCLTSFTYSRWISALCQ----SERIELVERLLA----------------DMDKFG 261

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            F           D +  NI V     D LC+  R  +A K L+ +  +G  P VVTY  
Sbjct: 262 CFP----------DIWACNIYV-----DCLCKHNRLHDALKTLENMWIRGTNPDVVTYTT 306

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++  LC      EA +L  +M  +G  PD  +   +I G    ++ D A
Sbjct: 307 VVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEA 355



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            +G+ L   +Y  L++G     +    +  FD+MV  G     V YN  I     K   F
Sbjct: 154 SQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFI-GVLVKNCCF 212

Query: 93  SAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             +    ++  DK + L    YS  I  LC+  R E   + L  + + G  P +   NI 
Sbjct: 213 DLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIY 272

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++ LCK   + +A K L  M  +G  PD  ++ TV+ G L  N+
Sbjct: 273 VDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVV-GCLCDNK 315



 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 42/188 (22%)

Query: 15  YGIRINGMCKI------REI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG  ING+  +       EI +  +K  +  +V +Y+ +++ LC   + ++A ++F +M+
Sbjct: 515 YGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMI 574

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + ++ +++T+N LI+  W                                 L +  R  
Sbjct: 575 QKEVSPDIITFNTLIY--W---------------------------------LGKCSRAI 599

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA      ++ +G+ P  +T+  LI+GL ++G   +A ++   M E G   D    + +I
Sbjct: 600 EAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLENGIILDRDVSDRLI 659

Query: 188 QGFLVKNE 195
             F   N+
Sbjct: 660 SMFKSNNK 667



 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + + R   N ++Y I ++ +CK  + + A       I+K +  D+  +++LI  L   +R
Sbjct: 538 MLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSR 597

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI 82
             EA++LF  M A+GI  + +T+  LI
Sbjct: 598 AIEAIDLFRDMTARGIEPDSLTFRYLI 624


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 4/199 (2%)

Query: 11  NFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           N   + I I+    +  I+ A    +  G   DV  +SS+IN LC   ++ E   L  +M
Sbjct: 226 NLITHTILISSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREM 285

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G+    VTY  L+   ++ +    A+AL   +      +++ VY++++ GL + G  
Sbjct: 286 EEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDL 345

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA K    L E   VP VVTY  L++GLCK G +  A+ ++ QM EK  FP+  +++++
Sbjct: 346 REAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSM 405

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G++ K   + A S ++K
Sbjct: 406 INGYVKKGMLEEAVSLMRK 424



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 13/214 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK----------IREIDSAIKKGICLDVFVYSSLINGLC 51
           D+    F  +   +   IN +CK          +RE++   + G+  +   Y++L++ L 
Sbjct: 249 DMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREME---EMGVYPNHVTYTTLVDSLF 305

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
                + A+ L+ +MV +GI  +LV Y  L+   ++      A    + L  D    N+ 
Sbjct: 306 KAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVV 365

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ ++DGLC+ G    A   + Q+ EK + P VVTY+ +ING  KKGM+ EA  L+ +M
Sbjct: 366 TYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKM 425

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +++   P+  ++ TVI G     + + AS   K+
Sbjct: 426 EDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKE 459



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I  G+  DVF  + LI+ LC   +L  A+ L    V   I+ + VTYN +I    E    
Sbjct: 121 IACGVSPDVFALNVLIHSLCKVGQLSFAISLLRNRV---ISVDTVTYNTVISGLCEHGLA 177

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--------- 142
             A   L  + +     +   ++ +IDG C+VG +  A+  +D++SE  L+         
Sbjct: 178 DEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSY 237

Query: 143 -------------------PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
                              P VVT++ +IN LCK G +ME   LL +M+E G +P+  ++
Sbjct: 238 YNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTY 297

Query: 184 NTVIQGFL 191
            T++    
Sbjct: 298 TTLVDSLF 305



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 11/189 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           +  QR +G+F        G+ K+   D     GI   + + + ++  LC   ++KEA+++
Sbjct: 580 MNSQRKQGDFE-------GILKLW--DKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDI 630

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLC 121
            D+M+   I   L TY   + D   K  R  A+    +TL     +L+ +VY+ +I  LC
Sbjct: 631 LDQMMFMEIHPNLTTYRIFL-DMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLC 689

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++G   +A   ++ +  +G VP  VT+N L++G      + +A      M E G  P+  
Sbjct: 690 KLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVA 749

Query: 182 SFNTVIQGF 190
           ++NT+I+G 
Sbjct: 750 TYNTIIRGL 758



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ++   K +  D+  K        GI L   VY++LI  LC     ++A  + 
Sbjct: 642 NLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVM 701

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A+G   + VT+N L+H      G F    + + L           YS+++      
Sbjct: 702 EDMEARGFVPDTVTFNALMH------GYFVGSHVGKALS---------TYSMMM------ 740

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
                         E G+ P V TYN +I GL   G+I E +K L +MK +G  PD  ++
Sbjct: 741 --------------EAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTY 786

Query: 184 NTVIQG 189
           N +I G
Sbjct: 787 NALISG 792



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 42  VYSSLINGL----CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           VY SL + L     +  RL  A      M   G+  +L  +N LIH           ++L
Sbjct: 56  VYVSLFHTLFRLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSL 115

Query: 98  LQT------LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           + +      +  D + LN+ ++SL     C+VG+   A   +  L  + +    VTYN +
Sbjct: 116 VYSKMIACGVSPDVFALNVLIHSL-----CKVGQLSFA---ISLLRNRVISVDTVTYNTV 167

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           I+GLC+ G+  EA + L +M + G  PD+ SFNT+I GF       RA + +
Sbjct: 168 ISGLCEHGLADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALV 219



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI--DSAIK----KGICLDVFVYSSLINGLCTFNR 55
           ++ E+    +   Y + I+G+ K  ++  D A K    KGI  D+  ++ ++N       
Sbjct: 529 EMQEKEMPWDVVSYNVLISGLLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 588

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            +  ++L+DKM + GI   L+  N ++    EK     A+ +L  +   +   N+  Y +
Sbjct: 589 FEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRI 648

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +D   +  R +   K  + L   G+      YN LI  LCK GM  +A  ++  M+ +G
Sbjct: 649 FLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARG 708

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASS 201
             PD+ +FN ++ G+ V +   +A S
Sbjct: 709 FVPDTVTFNALMHGYFVGSHVGKALS 734



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 8/151 (5%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDKMVAQGITAELVTYNPLIHD 84
           R + +    G+  D+ +++SLI+       + + V L + KM+A G++ ++   N LIH 
Sbjct: 79  RTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFALNVLIH- 137

Query: 85  NWEKQGRFS-AMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
           +  K G+ S A++LL    R++   ++   Y+ VI GLC  G  +EA + L ++ + G++
Sbjct: 138 SLCKVGQLSFAISLL----RNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGIL 193

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           P  V++N LI+G CK G    A  L+ ++ E
Sbjct: 194 PDTVSFNTLIDGFCKVGNFARAKALVDEISE 224



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKI--REIDSAIKK-----GICLDVFVYSSLINGLCTFNR 55
           + +Q    N   YG  I+G+ K   +E+ S + K     G+  + ++  +L+N L    R
Sbjct: 425 MEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGR 484

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +KE   L   MV++G+T + + Y  LI   ++     +A++  + ++  +   ++  Y++
Sbjct: 485 IKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVSYNV 544

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GL + G+   A      + EKG+ P + T+NI++N   K+G      KL  +MK  G
Sbjct: 545 LISGLLKFGK-VGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCG 603

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             P     N V+     K +   A   L + M
Sbjct: 604 IKPSLMICNIVVGMLCEKGKMKEAIDILDQMM 635



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 14  VYGIRINGMCK---IREIDSAIKKGI----CLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY + + G+ K   +RE +   K  +      +V  Y++L++GLC    L  A  +  +M
Sbjct: 331 VYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQM 390

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + + +   +VTY+ +I+   +K     A++L++ +E      N   Y  VIDGL + G+ 
Sbjct: 391 LEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQ 450

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +   ++   G+       + L+N L + G I E   L+  M  KG   D  ++ ++
Sbjct: 451 EVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSL 510

Query: 187 IQGFLVKNETDRASSF 202
           I  F    + + A S+
Sbjct: 511 IDVFFKGGDEEAALSW 526



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 13/187 (6%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ GI  +V  Y+++I GL     +KE  +   +M ++G+  +  TYN LI    +   +
Sbjct: 740 MEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNK 799

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             +M +   +  D        Y+++I    +VG+  +A + + ++ ++ + P   TY  +
Sbjct: 800 KESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTM 859

Query: 152 INGLC-----------KKGM-IMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDR 198
           I+GLC           KK M + EA  LL +M +EKG  P + +   +   F        
Sbjct: 860 ISGLCKLCTHPEVEWNKKAMYLAEAKGLLKEMIEEKGYIPYNQTIYWISAAFSKPGMKVD 919

Query: 199 ASSFLKK 205
           A  FLK+
Sbjct: 920 AERFLKE 926


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  ++G+CK   ++ A +        G   +  VY +LI+G C   +L+ A E+F
Sbjct: 608 NIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVF 667

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            KM  +G    L TY+ LI+  ++++     + +L  +  +    N+ +Y+ +IDGLC+V
Sbjct: 668 VKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKV 727

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ EEA + + ++ E G  P V+TY  +I+G  K G I +  +L   M  KGC P+  ++
Sbjct: 728 GKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITY 787

Query: 184 NTVIQGFLVKNETDRASSFL 203
             +I         D A   L
Sbjct: 788 RVLINHCCSTGLLDEAHRLL 807



 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 25/206 (12%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA---------------IKKGICLD--------VFVYSS 45
           K N   Y   I+G CK  +ID A               I     LD        +  Y +
Sbjct: 555 KPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGA 614

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERD 104
           L++GLC  NR++EA EL D M   G     + Y+ LI D + K G+  +A  +   +   
Sbjct: 615 LVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALI-DGFCKTGKLENAQEVFVKMSER 673

Query: 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
            Y  N+  YS +I+ L +  R +   K L ++ E    P VV Y  +I+GLCK G   EA
Sbjct: 674 GYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEA 733

Query: 165 DKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +L+++M+E GC+P+  ++  +I GF
Sbjct: 734 YRLMLKMEEVGCYPNVITYTAMIDGF 759



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 25/217 (11%)

Query: 13  HVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y I I+  CK   I       D  ++     +V  Y+SLI+      ++ +A +LF+ 
Sbjct: 489 YTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEM 548

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMAL--------LQTLERDKY---------EL 108
           M+ +G    +VTY  LI D   K G+              +++ + D Y           
Sbjct: 549 MLLEGSKPNVVTYTALI-DGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETP 607

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           NI  Y  ++DGLC+  R EEA + LD +S  G  P  + Y+ LI+G CK G +  A ++ 
Sbjct: 608 NIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVF 667

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           V+M E+G  P+  +++++I     +   D     L K
Sbjct: 668 VKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSK 704



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 13/201 (6%)

Query: 12  FHVYGIRINGMCKIREIDSA-------------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           + +Y I I  +C   E+  +             +  G+ L+    S+    LC   +  +
Sbjct: 377 YLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDK 436

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A E+  +M+++G   +  TY+ +I    +      A  L + ++++    ++  Y+++ID
Sbjct: 437 AFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILID 496

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G  ++AR   D++      P VVTY  LI+   K   + +A+KL   M  +G  P
Sbjct: 497 SFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKP 556

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +  ++  +I G     + D+A
Sbjct: 557 NVVTYTALIDGHCKAGQIDKA 577



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 3/164 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++LI      ++L  A  +  +M   G   +  T     + +  K GR      L  L
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAY-SLCKAGRCGDA--LSLL 263

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           E++++  +   Y+ ++ GLC    ++EA   LD++     +P VVTY IL++G   KG +
Sbjct: 264 EKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQL 323

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               ++L  M  +GC+P+   FN+++  +    +   A    KK
Sbjct: 324 GRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKK 367



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + KG   D   YS +I  LC  +++++A  LF++M   GI   + TY  LI D++ K G 
Sbjct: 445 MSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILI-DSFCKAGL 503

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A      + RD    N+  Y+ +I    +  +  +A K  + +  +G  P VVTY  
Sbjct: 504 IQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTA 563

Query: 151 LINGLCKKGMIMEADKLLVQMK 172
           LI+G CK G I +A ++  +M+
Sbjct: 564 LIDGHCKAGQIDKACQIYARMQ 585



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     N  +Y   I+G+CK+ + + A +        G   +V  Y+++I+G     +
Sbjct: 705 MLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGK 764

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++ +EL+  M ++G     +TY  LI+          A  LL  +++  +  +I  Y  
Sbjct: 765 IEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRK 824

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G  R   +  +   LD+LSE   VP    Y ILI+   K G +  A  LL ++    
Sbjct: 825 IIEGFNR--EFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSP 882

Query: 176 CFPDSTS--FNTVIQGFLVKNETDRA----SSFLKKNM 207
               +    + ++I+     ++ D+A    +S + KN+
Sbjct: 883 SLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNV 920



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 3/162 (1%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           LI   C       A+E   ++   G  A   TYN LI          +A  + + +    
Sbjct: 176 LIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSG 235

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           + ++          LC+ GR  +A   L  L ++  VP  V YN +++GLC+  +  EA 
Sbjct: 236 FRMDGCTLGCFAYSLCKAGRCGDA---LSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAM 292

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
            +L +M+   C P+  ++  ++ G L K +  R    L   M
Sbjct: 293 DILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMM 334



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 9/170 (5%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  L  F YS     LC   R  +A+ L +K   +    + V YN ++    E      A
Sbjct: 240 GCTLGCFAYS-----LCKAGRCGDALSLLEK---EEFVPDTVFYNRMVSGLCEASLFQEA 291

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           M +L  +       N+  Y +++ G    G+    ++ L  +  +G  P    +N L++ 
Sbjct: 292 MDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHA 351

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            CK      A KL  +M + GC P    +N  I G +  NE    S  L+
Sbjct: 352 YCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFI-GSICSNEELPGSDLLE 400



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 70  GITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           G +   V YN LI     N     R S   L+Q  + D+ EL  ++ + +I   CR G W
Sbjct: 128 GYSHTPVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDR-ELLRKLLNFLIQKCCRNGMW 186

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
             A ++L +L + G      TYN LI       + + ADKL
Sbjct: 187 NVALEELGRLKDFGYKASPTTYNALIQ------VFLRADKL 221


>gi|302796396|ref|XP_002979960.1| hypothetical protein SELMODRAFT_12814 [Selaginella moellendorffii]
 gi|300152187|gb|EFJ18830.1| hypothetical protein SELMODRAFT_12814 [Selaginella moellendorffii]
          Length = 220

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 88/150 (58%), Gaps = 2/150 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDN-WEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           AVELF +M+A  ++   +T+  L       +QGR  A+ALL+ +++ +   N ++Y++++
Sbjct: 1   AVELFREMLANSLSPGAMTFVHLFSAELMARQGR-QALALLEHMKKAEVPANAKLYNIIL 59

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC+ G+ +EA   L  ++     P + TYNILIN LCK GM+ +A  L V+M  +GC 
Sbjct: 60  THLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKAGMMDKAMDLFVEMPTRGCI 119

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           PD  ++N+++ GF    + + A+    + M
Sbjct: 120 PDVVTYNSIVDGFCKAGKVEEANKLFAEMM 149



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           +Y+ ++  LC   + KEA++L   M       ++ TYN LI+   +      AM L   +
Sbjct: 54  LYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKAGMMDKAMDLFVEM 113

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARK---KLDQLSEKGLVPGVVTYNILINGLCKK 158
                  ++  Y+ ++DG C+ G+ EEA K   ++ ++S++GLV  + +Y  LI+ +CK 
Sbjct: 114 PTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMMRISKEGLVDAI-SYVALISTICKL 172

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G      +LL +M EKG  P+  +FN V +G   ++ TD A
Sbjct: 173 GKGKLGFQLLREMLEKGFKPNLVTFNVVFEGLSKESNTDDA 213


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN 54
           ++ E+    N   Y I +NG  +  + + A      +KK  C +DV  Y+S+I+GL    
Sbjct: 221 EMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVG 280

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K A  +F++MV  G+   + T+N LI    +K    +A+ + + + +  Y  N   Y+
Sbjct: 281 EIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYN 340

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           LVI GLC VG  + A + ++++ +    P V TYNILI   C  G I +   L  +M   
Sbjct: 341 LVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNG 400

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
            C P+  ++N +I    V+  +D
Sbjct: 401 DCLPNLDTYNILINSMFVRKNSD 423



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 6/190 (3%)

Query: 22  MCKIREID------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +CK + ++       A+K     D   Y+ ++NG C   R  +A+E+  +MV +G+T  L
Sbjct: 172 LCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNL 231

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            TYN +++  +       A      +++ K ++++  Y+ VI GL  VG  + AR   +Q
Sbjct: 232 TTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQ 291

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + + G++P V T+N LI  LCKK  +  A  +  +M ++G  P+S ++N VI+G     E
Sbjct: 292 MVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGE 351

Query: 196 TDRASSFLKK 205
             RA   +++
Sbjct: 352 MQRAMELMER 361


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           L E+  K +   YG+ ING+CK       +R ++ A  +G  LD F YSS+++GLC    
Sbjct: 385 LHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGM 444

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++AVEL  +M           +N LI+          A+++L+ ++       +  Y+ 
Sbjct: 445 LEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNT 504

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+  R+ +A   L ++ E+GL P ++TY++LI+GLC+   +  A  L  Q   K 
Sbjct: 505 IINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKR 564

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD    N +I G     + D A
Sbjct: 565 LKPDLQMHNIIIHGLCTAQKVDVA 588



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 10/190 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I   CK R+ +          + G+  D+  Y +LIN L     L +AVELF
Sbjct: 148 NLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELF 207

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLC 121
           D+M  +G+  +++ YN LI D + ++G F     +  + L       ++E Y+++I+GLC
Sbjct: 208 DEMSVRGVNPDVMCYNILI-DGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++G+ +E+ +  +++ +    P + T++ +I+GL K G    A+K+  +M E G  PD  
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVR 326

Query: 182 SFNTVIQGFL 191
           ++N ++ G  
Sbjct: 327 TYNAMLSGLF 336



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 101/196 (51%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I G+   ++++ AI       ++G+  D   Y  LINGLC    L +A+ + 
Sbjct: 358 NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRIL 417

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           ++   +G   +   Y+ ++H   +K     A+ L+  +++++ +LN  V++ +I+G  R 
Sbjct: 418 EEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRA 477

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + EEA   L ++  K   P VV+YN +INGLCK     +A   L +M E+G  PD  ++
Sbjct: 478 FKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITY 537

Query: 184 NTVIQGFLVKNETDRA 199
           + +I G     + D A
Sbjct: 538 SLLIDGLCRGEKVDMA 553



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           LTE     +   Y I ING+CK+ ++D ++       K     D+F +SS+I+GL     
Sbjct: 246 LTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGN 305

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A ++F +M+  G++ ++ TYN ++   + + G+ +    L  +       NI  Y++
Sbjct: 306 FNAAEKVFQEMIESGLSPDVRTYNAMLSGLF-RTGKLNKCFELWNVMSKNNCCNIVSYNM 364

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GL    + E+A      L E+GL     TY +LINGLCK G + +A ++L + + +G
Sbjct: 365 LIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEG 424

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              D+ ++++++ G   K   ++A   + +
Sbjct: 425 ADLDTFAYSSMVHGLCKKGMLEQAVELIHQ 454



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + + R K N HV+   ING  +  +++ AI        K     V  Y+++INGLC   R
Sbjct: 455 MKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAER 514

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +A     +M+ +G+  +++TY+ LI      +    A+ L       + + +++++++
Sbjct: 515 FSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNI 574

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC   + + A +   Q+ +   VP +VT+N ++ GL K G  +EA K+  ++ E G
Sbjct: 575 IIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAG 634

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFL 203
             PD  S+N   +G         A  FL
Sbjct: 635 LQPDIISYNITFKGLCSCARVSDAIEFL 662



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 93/182 (51%), Gaps = 7/182 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING+CK      A       +++G+  D+  YS LI+GLC   ++  A+ L+ + +
Sbjct: 502 YNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCI 561

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            + +  +L  +N +IH     Q    A+ +   + +     ++  ++ +++GL + G   
Sbjct: 562 NKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCV 621

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA K  D++ E GL P +++YNI   GLC    + +A + L    ++G  P++ ++N ++
Sbjct: 622 EALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLV 681

Query: 188 QG 189
           + 
Sbjct: 682 RA 683



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%)

Query: 18  RINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           R   + K  E+ + + K  C ++  Y+ LI GL    ++++A+  +  +  +G+ A+  T
Sbjct: 337 RTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTT 396

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           Y  LI+   +      A+ +L+  E +  +L+   YS ++ GLC+ G  E+A + + Q+ 
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK 456

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +         +N LING  +   + EA  +L +MK K C P   S+NT+I G 
Sbjct: 457 KNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGL 509



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 1/149 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++S++N     N+ +EA   F      G++  L TYN LI  + +K+       LL  + 
Sbjct: 117 FNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMF 176

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
            +    +I  Y  +I+ L + G   +A +  D++S +G+ P V+ YNILI+G  +KG  +
Sbjct: 177 ENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFV 236

Query: 163 EADKLLVQ-MKEKGCFPDSTSFNTVIQGF 190
           +A+++  + + E   +P   ++N +I G 
Sbjct: 237 KANEIWKRLLTESSVYPSVETYNIMINGL 265



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 58  EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           +A+ LF  MV   G    + ++N +++   E      A       +      N++ Y+++
Sbjct: 96  QALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNIL 155

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I   C+  ++E+ +  L  + E GL P +++Y  LIN L K G +++A +L  +M  +G 
Sbjct: 156 IKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGV 215

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            PD   +N +I GFL K +  +A+   K+
Sbjct: 216 NPDVMCYNILIDGFLRKGDFVKANEIWKR 244


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
             ++ LI+ LC    +  A+E+F++M     T ++VTY+ LI+   E+    SA+ L Q+
Sbjct: 450 MTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQS 509

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +     + +I  Y+ V+ GLCR  RWE+A + +  ++ K   P  +T+NILIN LC+KG 
Sbjct: 510 M---PCKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGF 566

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              A ++  QM E G  PD  ++N +I GF  +   D A + L 
Sbjct: 567 ADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLS 610



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   + G+C  ++ + A       I+     +   +++ I   C    L  AV+L ++
Sbjct: 211 YTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLER 270

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M   G T ++V Y+ L+ + + +QGR   A+ LL T+     + N   Y+  + GLC   
Sbjct: 271 MPRYGCTPDVVIYSTLV-NGFSEQGRVDDALVLLNTM---LCKPNTVCYNAALKGLCMAE 326

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           RW++  + + ++  K   P   T+++L + LC+ G++  A +++ QM++ GC PD   +N
Sbjct: 327 RWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYN 386

Query: 185 TVIQGFLVKNETDRA 199
           T+I  F  +   D A
Sbjct: 387 TLINYFSEQGRVDDA 401



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 23/189 (12%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I+ +C+   ++ AI       K     D+  YSSLING      ++ A+ELF  M
Sbjct: 451 TFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM 510

Query: 67  VAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             +    ++ +YN ++        WE  G      L+  + R     N   ++++I+ LC
Sbjct: 511 PCK---PDIFSYNAVLKGLCRAARWEDAGE-----LIANMARKDCPPNEITFNILINSLC 562

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  + A +   Q+ E G  P + TYN LING  ++G + +A  LL  M    C PD+ 
Sbjct: 563 QKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM---SCKPDAI 619

Query: 182 SFNTVIQGF 190
           S+N+ ++G 
Sbjct: 620 SYNSTLKGL 628



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A+K+    D   +++L+ G C   RL +A  + +     G  A +VTY  LI + + + G
Sbjct: 135 ALKESGSADAVSHNTLVAGYCRDGRLADAERVLEAAKVSG-AANVVTYTALI-NGYCRSG 192

Query: 91  RFS-AMALLQTLE--RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           R + A+ L+ ++    D Y      Y+ V+ GLC   +WE+A + ++++      P  VT
Sbjct: 193 RLADALNLIASMPVAPDTY-----TYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVT 247

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +   I   C+ G++  A +LL +M   GC PD   ++T++ GF  +   D A
Sbjct: 248 FATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDA 299



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 7/193 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGIC-LDVFVYSSLINGLCTFNRLKE 58
           + + R   +   Y   ING  +   ++SAI   +   C  D+F Y++++ GLC   R ++
Sbjct: 475 MPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDIFSYNAVLKGLCRAARWED 534

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A EL   M  +      +T+N LI+   +K     A+ + + +       +I  Y+ +I+
Sbjct: 535 AGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALIN 594

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G    GR ++A   L+ LS     P  ++YN  + GLC+     EA++++ +M  K C P
Sbjct: 595 GFSEQGRLDDA---LNLLSTMSCKPDAISYNSTLKGLCRAERWKEAEEIVAEMLRKKCPP 651

Query: 179 DSTSFNTVIQGFL 191
           +  +F    Q F+
Sbjct: 652 NEVTFKYANQLFI 664



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 9   KGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + G+C           I   ++K    +   +S L + LC    +  A+E
Sbjct: 309 KPNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAME 368

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           + ++M   G   ++V YN LI + + +QGR   A+ LL ++  +   ++   ++  +  L
Sbjct: 369 VVEQMQKYGCRPDVVIYNTLI-NYFSEQGRVDDALMLLDSMLCNPDTIS---FNAALKAL 424

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR  RW +  + + Q+  +      +T+NILI+ LC+ G++  A ++  QM +  C PD 
Sbjct: 425 CRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDI 484

Query: 181 TSFNTVIQGF 190
            +++++I GF
Sbjct: 485 VTYSSLINGF 494



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           V   + LI  LC   RL +A  + D +   G +A+ V++N L+   + + GR +    + 
Sbjct: 110 VIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLVA-GYCRDGRLADAERVL 167

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
              +     N+  Y+ +I+G CR GR  +A   L+ ++   + P   TYN ++ GLC   
Sbjct: 168 EAAKVSGAANVVTYTALINGYCRSGRLADA---LNLIASMPVAPDTYTYNTVLKGLCGAK 224

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              +A++L+ +M    C P+  +F T I+ F      D A   L++
Sbjct: 225 QWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLER 270



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 35/215 (16%)

Query: 23  CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           C +  ++   K G   DV +Y++LIN      R+ +A+ L D M+    T   +++N  +
Sbjct: 365 CAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCNPDT---ISFNAAL 421

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL------ 136
                 +  +    L+  + R+   L    ++++ID LC+ G    A +  +Q+      
Sbjct: 422 KALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCT 481

Query: 137 -------------SEKGLV-------------PGVVTYNILINGLCKKGMIMEADKLLVQ 170
                        SE+GLV             P + +YN ++ GLC+     +A +L+  
Sbjct: 482 PDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAN 541

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  K C P+  +FN +I     K   DRA    K+
Sbjct: 542 MARKDCPPNEITFNILINSLCQKGFADRAIEVFKQ 576



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P V+  NILI  LC    + +A+++L  +KE G   D+ S NT++ G+
Sbjct: 108 PAVIACNILIKKLCAHRRLADAERVLDALKESGSA-DAVSHNTLVAGY 154


>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
 gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
          Length = 499

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 17/220 (7%)

Query: 2   DLTEQRFK----GNFHVYGIRINGMCKIREIDSAIK------KGICLDV----FVYSSLI 47
           DL + R K     N  VY I I    +I E+++A K      +  C DV      YS+LI
Sbjct: 171 DLRDPRNKYLPRPNTCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLI 230

Query: 48  NGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
            GLC   ++ EA ELF++M+ +  I  + + YN +I D + + G+   A A+   ++++ 
Sbjct: 231 AGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVII-DGFCRLGQVDKARAIFGFMKKND 289

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
            E N   Y+ +I+G C+    E AR   +++   G+ P  V+Y  LI  LC+ G + EA 
Sbjct: 290 CEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAI 349

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L+++MK+KGC  D  ++N VI+G      T  A   L+ 
Sbjct: 350 NLVLEMKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLES 389



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK  +I++A          G+  D   Y++LI  LC    + EA+ L  +M 
Sbjct: 297 YATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMK 356

Query: 68  AQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G  A++VTYN L+ +   + GR   AM LL+++  +  +LN+  Y ++++ LC  G  
Sbjct: 357 QKGCRADVVTYN-LVIEGLCRDGRTVEAMDLLESVPLEGVKLNVASYRILMNCLCSRGEM 415

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L  +  +G +P     N L+ GLC  G I +A   L  + + G  P++  +  +
Sbjct: 416 DKAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEARCWERL 475

Query: 187 IQGFLVKNETDRASSFL 203
           ++    + +  R++  L
Sbjct: 476 VETMCRERKQRRSTELL 492



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           K N   Y   I G+C+  ++  A         K  I  D  +Y+ +I+G C   ++ +A 
Sbjct: 220 KPNLVTYSTLIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKAR 279

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +F  M           Y  LI+ + +K    +A ++ + +     E +   Y+ +I  L
Sbjct: 280 AIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCL 339

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           CR G  +EA   + ++ +KG    VVTYN++I GLC+ G  +EA  LL  +  +G   + 
Sbjct: 340 CRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKLNV 399

Query: 181 TSFNTVIQGFLVKNETDRA 199
            S+  ++     + E D+A
Sbjct: 400 ASYRILMNCLCSRGEMDKA 418


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++  Q    N   Y   IN +CK R+ + A+       K+ +   V VYS+LI+G    +
Sbjct: 525 EMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQS 584

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             ++A+ L+ +M+  G+T ++V Y  LI+    +     A  L + +  +    +   Y+
Sbjct: 585 NSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYT 644

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI G CR+G   +A    +++ ++G +P VVTY  L++G CK   I  AD L+ +MK K
Sbjct: 645 SVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRK 704

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++N +I     +   D+A   L +
Sbjct: 705 GITPDVVTYNVLIAAHRRRGNLDKALEMLNE 735



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   I+G  K      A+       K G+  D+  Y+ LIN LC  +R+ EA  LF KM
Sbjct: 572 VYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKM 631

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G+T + ++Y  +I           A AL   + +  +   +  Y+ ++DG C++ R 
Sbjct: 632 TENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRI 691

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           + A   +D++  KG+ P VVTYN+LI    ++G + +A ++L +MKE G  PD  ++
Sbjct: 692 DIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 42/231 (18%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y   I+G+CK  E+D A+K        GI  DV+ YS LI+G C    +++ + L 
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383

Query: 64  DKMVAQGITAELVTYNPLIHDNWEK----------------------------------Q 89
           ++M    +   LV+Y+ L H   +K                                  Q
Sbjct: 384 EEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQ 443

Query: 90  GRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           G   SA  L++ + R+    +   +  ++ G C++G W  A +  + + E G++P + T 
Sbjct: 444 GDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATC 503

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N++I+  C++G + EA  L+ +M+ +G FP+  ++N VI     + +++RA
Sbjct: 504 NVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERA 554



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK       +   +  ++ GI   +   + +I+  C   R++EA+ L ++M  QGI
Sbjct: 472 VHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGI 531

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              L TYN +I+   +++    A+ L   + +     ++ VYS +IDG  +    ++A  
Sbjct: 532 FPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALM 591

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              ++ + G+ P +V Y ILIN LC +  + EA  L  +M E G  PD  S+ +VI GF
Sbjct: 592 LYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGF 650



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I G+C++  ++SA       I     ++V+ Y+++I+GLC    L EA+++ ++M 
Sbjct: 293 YSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMK 352

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + GI+ ++ TY+ LIH  + KQG     + L++ ++    E ++  YS +  GLC+    
Sbjct: 353 SCGISPDVYTYSILIH-GFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLS 411

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + +      L   G       Y+ILI G C +G +  A KL+ +M      PD ++F ++
Sbjct: 412 DISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESL 471

Query: 187 IQGF 190
           + GF
Sbjct: 472 VHGF 475



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 39  DVFVYSSLINGLCTFN------RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +VF Y+ ++N  C  N        ++A E+ ++M   G +  +VTY+  I+         
Sbjct: 248 NVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVE 307

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA+  +++L      +N+  Y+ +I GLC+ G  +EA K L+++   G+ P V TY+ILI
Sbjct: 308 SALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILI 367

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
           +G CK+G + +   L+ +MK     P   S++++  G   K  +D
Sbjct: 368 HGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSD 412



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           DL    +K +   Y I I G C   ++DSA       ++  +  D   + SL++G C   
Sbjct: 420 DLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMG 479

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
               A+E F+ M+  GI   + T N +I D   ++GR   A+ L+  ++      N+  Y
Sbjct: 480 LWVNALEFFNMMLEGGILPSIATCNVII-DAHCREGRVEEALNLMNEMQTQGIFPNLFTY 538

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI+ LC+  + E A +    + ++ ++P VV Y+ LI+G  K+    +A  L  +M +
Sbjct: 539 NAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLK 598

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  PD  ++  +I     ++    A +  KK
Sbjct: 599 IGVTPDMVAYTILINILCHRSRMCEAYNLFKK 630



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 12/178 (6%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A K G+ L     + L+  L   NR +    LF++M + G    + TY  ++  N+  +G
Sbjct: 205 AKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMM--NFYCKG 262

Query: 91  RF--------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGL 141
            F         A  +L+ +ER+     +  YS  I GLCRVG  E A   +  L S  GL
Sbjct: 263 NFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGL 322

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           V  V  YN +I+GLCKKG + EA K+L +MK  G  PD  +++ +I GF  + + ++ 
Sbjct: 323 V-NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKG 379



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 15  YGIRINGMC---KIREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I IN +C   ++ E  +  KK    G+  D   Y+S+I G C    +++A  LF++M+
Sbjct: 608 YTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEML 667

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G    +VTY  L+ D + K  R   A  L+  ++R     ++  Y+++I    R G  
Sbjct: 668 QRGHLPTVVTYTSLV-DGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNL 726

Query: 127 EEARKKLDQLSEKGLVPGVVTYNIL 151
           ++A + L+++ E G++P  +TY +L
Sbjct: 727 DKALEMLNEMKENGVLPDHMTYMML 751


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           F + E+     F      Y + ++ +C+    + A       +  G+  D   Y+S+ING
Sbjct: 480 FSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIING 539

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
                 L++A E+F++M+++G+   +VTY  LIH +  KQ    A      +       N
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I+GLC   R +EA K  D++ EKG++P   +Y ILIN  C  G   EA +L  
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659

Query: 170 QMKEKGCFPDSTSFNTVIQ 188
           +M ++   PDS + +  ++
Sbjct: 660 EMLDRKIQPDSFTHSVFLK 678



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 22/203 (10%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L+E + +G +     Y + +NG+ K  E++ A       +  G+ +  + Y+ LING C 
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD--NWEK----QGRFSAMALLQTLERDKY 106
                EA +L ++MV +     L TYN L++    W +    + RFS M       + K+
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML------KSKF 351

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             +I  ++ ++ G CR G   EA    D+L  + LVP V+TYN LI+GLC  G +  A +
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR 411

Query: 167 LLVQMKEKGCFPDSTSFNTVIQG 189
           L  +M ++G FPD  ++  ++ G
Sbjct: 412 LKKEMTDQGLFPDIFTYTILVNG 434



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C    +D+A++       +G+  D+F Y+ L+NG      +  A   F++M+
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +   YN  I    +      A ++ + +    +  ++  Y++ +  LC+ G +E
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L+ +   GL+P  VTY  +ING  K G + +A ++  +M  KG  P   ++  +I
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572

Query: 188 QGFLVKNETDRASSFLKK 205
                K   D A  +  K
Sbjct: 573 HAHAAKQMLDLAFMYFSK 590



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I+ G+  DV   + ++  L   N L +A  ++  M   GI   +VTYN ++ D++ K
Sbjct: 169 DKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML-DSYCK 227

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A+ LL  ++      N   Y+++++GL + G  E+A+  ++++   GL     T
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           YN LING C+KG+ +EA  L+ +M  +  FP  +++NT++ G
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T+Q    +   Y I +NG  K+  +  A       + KG+  D F Y++ I G     
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
               A  + ++M+A G   +++TYN  +H    +QG F  A  LL+ +  D    +   Y
Sbjct: 475 DTSVAFSMQEEMLAAGFPPDVITYNVFVHA-LCQQGNFEEACDLLENMVSDGLIPDHVTY 533

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G  + G   +AR+  +++  KG+ P VVTY +LI+    K M+  A     +M E
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLE 593

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K    +  ++N +I G  +    D A  +  +
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDE 625



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   V  Y+++++  C   R+ +A+EL  +M  +G     VTYN L++   +K     A
Sbjct: 210 GIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L++ +      ++   Y+ +I+G C+ G + EA   ++++  +   P + TYN L+ G
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK   +         M +    PD  SFN+++ G+
Sbjct: 330 LCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 72/132 (54%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FDKM+  G+  ++   N ++    ++     A  +   +E+   +  +  Y+ ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR ++A + L ++ E+G  P  VTYN+L+NGL KKG + +A  L+ +M   G    + 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 182 SFNTVIQGFLVK 193
           ++N +I GF  K
Sbjct: 287 TYNPLINGFCQK 298



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 50/79 (63%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A+     + + G+ P VVTYN +++  CK+G + +A +LL +M+E+GC+P+  ++N +
Sbjct: 197 SKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVL 256

Query: 187 IQGFLVKNETDRASSFLKK 205
           + G   K E ++A   +++
Sbjct: 257 VNGLSKKGELEQAKGLIEE 275



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 35/124 (28%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++K +  +V  Y+++INGLC   R+ EA + FD+M  +GI                   +
Sbjct: 592 LEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILP----------------NK 635

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           FS                   Y+++I+  C +G WEEA +   ++ ++ + P   T+++ 
Sbjct: 636 FS-------------------YTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVF 676

Query: 152 INGL 155
           +  L
Sbjct: 677 LKNL 680


>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 376

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YGI ++G CK   I+ ++       +KG   D   Y  +INGLC   +L++AV + + M
Sbjct: 96  TYGILVHGFCKNGYINKSLHLLEIXERKGRXXDALAYXPMINGLCKETKLEKAVSVLNGM 155

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G       YN LI+          A+ + + +        I  YS++I+GLC+  R+
Sbjct: 156 IQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFPHCSPTIVTYSILINGLCKSERF 215

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA   + ++ EKGL P V+TY++L+ GLC    +  A +L  Q+ +KG  PD    N +
Sbjct: 216 SEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNIL 275

Query: 187 IQGFLVKNETDRASSF 202
           I G     +T  A S 
Sbjct: 276 IHGLCSVAKTQHALSL 291



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             +  YS LINGLC   R  EA +
Sbjct: 161 KPNTHVYNALINGLIGASKSEDAIRVFREMGFPHCSPTIVTYSILINGLCKSERFSEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G+T  ++TY+ L+           A+ L   + +  ++ ++++++++I GLC
Sbjct: 221 LVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            V + + A      ++     P +VT+N L+ G  K G I  A  +  ++ +    PD  
Sbjct: 281 SVAKTQHALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNALVMWARILKNELQPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAILFL 362



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING+CK      A       ++KG+   V  YS L+ GLC  ++++ A++L++++
Sbjct: 201 TYSILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQV 260

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G   ++  +N LIH          A++L   + R     N+  ++ +++G  + G  
Sbjct: 261 TKKGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDI 320

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             A     ++ +  L P +++YNI + GLC    I +A   L     K  FP
Sbjct: 321 RNALVMWARILKNELQPDIISYNITLKGLCSCNRISDAILFLHDAVRKKIFP 372



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK------KGICLDVFVYSSLINGLCTFNR 55
           D+ + +   +  VY   +NG  +   I    +      K     V  ++ ++ GL    R
Sbjct: 15  DIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEGSRSVASFNIMMRGLFDNGR 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E   +++ M   G   + +TY  L+H  + K G  + ++ LL+  ER     +   Y 
Sbjct: 75  VDEVNSIWELMKKGGYVEDSITYGILVH-GFCKNGYINKSLHLLEIXERKGRXXDALAYX 133

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+  + E+A   L+ + + G  P    YN LINGL       +A ++  +M   
Sbjct: 134 PMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFP 193

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            C P   +++ +I G         A   +K+
Sbjct: 194 HCSPTIVTYSILINGLCKSERFSEAYDLVKE 224



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    +  A  ++  +V   ++ + V YN ++ + + + GR      L  +   +   ++
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAML-NGFYRAGRIKDCFELWEMMGKEGSRSV 59

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +++++ GL   GR +E     + + + G V   +TY IL++G CK G I ++  LL  
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEI 119

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            + KG   D+ ++  +I G   + + ++A S L
Sbjct: 120 XERKGRXXDALAYXPMINGLCKETKLEKAVSVL 152



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+    +   Y + + G+C   +++ A+       KKG   DV +++ LI+GLC+  
Sbjct: 224 EMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVA 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A+ L+  M     +  LVT+N L+   ++     +A+ +   + +++ + +I  Y+
Sbjct: 284 KTQHALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNALVMWARILKNELQPDIISYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R  +A   L     K + P  +T
Sbjct: 344 ITLKGLCSCNRISDAILFLHDAVRKKIFPTKIT 376


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+ K  + D A       + + I  +V +YSS+I  LC    + +A+E+ 
Sbjct: 197 NVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVH 256

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+MV  G+T    TY  L+H          A+  L+ +  +  E N+  YS  +D LC+ 
Sbjct: 257 DRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKN 316

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR  EARK  D + ++GL P + TY+ L++G   +G ++E   L   M +    PD   F
Sbjct: 317 GRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVF 376

Query: 184 NTVIQGFLVKNETDRA 199
           NT+I     + + D A
Sbjct: 377 NTLIYASAKQGKVDEA 392



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 19/205 (9%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++G C   ++  AIK        G+  +V  YSS ++ LC   R  EA ++F
Sbjct: 267 NCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIF 326

Query: 64  DKMVAQGITAELVTYNPLIHDNW------EKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           D MV +G+  ++ TY+ L+H         E  G F  M +   ++ D Y  N  +Y+   
Sbjct: 327 DSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLM-VQSDMQPDHYVFNTLIYASA- 384

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
               + G+ +EA     ++ ++GL P  VTY+ LING CK   +  A  L  +M   G  
Sbjct: 385 ----KQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVS 440

Query: 178 PDSTSFNTVIQGFLVKNETDRASSF 202
           P+  ++N ++QG      T  A  F
Sbjct: 441 PNFITYNIMLQGLFRTGRTATAKEF 465



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 20  NGMC-KIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           NG C + R+I DS +K+G+  D+  YSSL++G      L E   LFD MV   +  +   
Sbjct: 316 NGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYV 375

Query: 78  YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
           +N LI+ +  KQG+   AM +   + +   + N   YS +I+G C++ R E A     ++
Sbjct: 376 FNTLIYASA-KQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEM 434

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              G+ P  +TYNI++ GL + G    A +  VQ+ + G
Sbjct: 435 VSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 26/211 (12%)

Query: 13  HVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H YGI I   C    +D         +KKG  ++  +++ L+ GLC   R  +A+++   
Sbjct: 91  HTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDI--- 147

Query: 66  MVAQGIT---------AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYS 114
            V +G+T         +  +    L H+N  ++    A+ LL  +  D      N+  YS
Sbjct: 148 -VLRGMTELSCVPNVFSHTIILKGLCHENRSQE----ALELLHMMADDGGGCLPNVVSYS 202

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VIDGL + G  ++A     ++ ++ ++P VV Y+ +I  LCK   + +A ++  +M + 
Sbjct: 203 TVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN 262

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++ +++ GF    +   A  FL+K
Sbjct: 263 GVTPNCFTYTSLVHGFCSSGQLTEAIKFLEK 293



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEVY 113
           ++A+++FD+++ +GI A + + N  + D   +    +A++    + R    +    +  Y
Sbjct: 35  EDALDVFDELLRRGIGAPIRSLNGALAD-VARDNPAAAVSRFNRMARAGASMVTPTVHTY 93

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
            ++I   C  GR +     L  + +KG     + +N L+ GLC      +A D +L  M 
Sbjct: 94  GILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMT 153

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           E  C P+  S   +++G   +N +  A   L
Sbjct: 154 ELSCVPNVFSHTIILKGLCHENRSQEALELL 184


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 9/203 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFN 54
           ++ +   K +   Y   I  +C+I ++D A++K       G+  D + Y  LI G CT  
Sbjct: 423 EMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 482

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVY 113
            L +A EL  +++  G+  ++V ++ +I +N  K GR   A  +           +  VY
Sbjct: 483 SLLKAKELILEIMNNGMRLDIVFFSSII-NNLCKLGRIMDAQNIFDLTVNVGQHPDAVVY 541

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S+++DG C VG+ E+A +  D +   G+ P VV Y  L+NG CK G I E   L  +M +
Sbjct: 542 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQ 601

Query: 174 KGCFPDSTSFNTVIQGFLVKNET 196
           KG  P +  +N +I G  V   T
Sbjct: 602 KGIKPSTILYNIIIDGLFVAGRT 624



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC------KIRE-IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q    + + Y   I G C      K +E I   +  G+ LD+  +SS+IN LC   R
Sbjct: 459 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGR 518

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + +A  +FD  V  G   + V Y+ ++ D +   G+   A+ +   +     E N+ VY 
Sbjct: 519 IMDAQNIFDLTVNVGQHPDAVVYS-MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYG 577

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++G C++GR +E      ++ +KG+ P  + YNI+I+GL   G  + A     +M E 
Sbjct: 578 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTES 637

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           G   +  ++N V++GF  KN     + FL K +
Sbjct: 638 GIAINKCTYNIVLRGFF-KNRCFDEAIFLFKEL 669



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 24  KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E     D+   KG   DVF Y  ++NG  T   L +  +LFD M+  GI  ++ T++
Sbjct: 343 KIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFS 402

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
            LI           AM +   +     + ++  Y+ VI  LCR+G+ ++A +K +Q+ ++
Sbjct: 403 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQ 462

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+ P    Y+ LI G C  G +++A +L++++   G   D   F+++I
Sbjct: 463 GVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSII 510



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+++I+       + +A +LF +MV +GI  +LVTY+ ++H   + +    A A L
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFL 281

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +       +   Y+ +I G    G+W+EA +   ++    ++P VVT N+L+  LCK 
Sbjct: 282 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKY 341

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
           G I EA  +   M  KG  PD  S+  ++ G+  K
Sbjct: 342 GKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 2/169 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +++GI  D+  YSS+++ LC    + +A     +MV +G+  +  TYN LI+  +   G+
Sbjct: 250 VQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIY-GYSSTGQ 308

Query: 92  F-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           +  A+ + + + R     ++   ++++  LC+ G+ +EAR   D ++ KG  P V +Y I
Sbjct: 309 WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           ++NG   KG +++   L   M   G  PD  +F+ +I+ +      D+A
Sbjct: 369 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKA 417



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 19  INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           IN +CK+  I       D  +  G   D  VYS L++G C   ++++A+ +FD MV+ GI
Sbjct: 510 INNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 569

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              +V Y  L+ + + K GR    ++L + + +   + +  +Y+++IDGL   GR   A+
Sbjct: 570 EPNVVVYGTLV-NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAK 628

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            K  +++E G+     TYNI++ G  K     EA  L  +++      D  + NT+I G 
Sbjct: 629 VKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 688

Query: 191 LVKNETDRA 199
                 + A
Sbjct: 689 FQTRRVEEA 697



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 2/196 (1%)

Query: 14  VYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +YG    G  K  +R      +  I  DV   + L+  LC + ++KEA ++FD M  +G 
Sbjct: 300 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ 359

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ +Y  +++    K        L   +  D    +I  +S++I      G  ++A  
Sbjct: 360 NPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMI 419

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             +++ + G+ P VVTY  +I  LC+ G + +A +   QM ++G  PD  +++ +IQGF 
Sbjct: 420 IFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 479

Query: 192 VKNETDRASSFLKKNM 207
                 +A   + + M
Sbjct: 480 THGSLLKAKELILEIM 495



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 59  AVELFDKMV--AQG---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           AV LF++    AQG   ++    TY  L+           A+A    L R    ++I + 
Sbjct: 94  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIA 153

Query: 114 SLVIDGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + ++ G C   R +EA    L +  E G VP V +Y+IL+  LC +G   +AD LL  M 
Sbjct: 154 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 213

Query: 173 EKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E G  C PD  ++ TVI  F  + + ++A    K+
Sbjct: 214 EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKE 248



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VYG  +NG CKI  ID  +       +KGI     +Y+ +I+GL    R   A   F
Sbjct: 572 NVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKF 631

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI     TYN ++   ++ +    A+ L + L     +++I   + +I G+ + 
Sbjct: 632 HEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQT 691

Query: 124 GRWEEARKKLDQLSEKGLVPGVVT 147
            R EEA+     +S  GLVP VVT
Sbjct: 692 RRVEEAKDLFASISRSGLVPCVVT 715



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L++     +R + A+  F +++  G+  +++  N L+    E +    A+ +L  L 
Sbjct: 118 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDIL--LH 175

Query: 103 RDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLC 156
           R   EL    ++  YS+++  LC  G+  +A   L  ++E G V  P VV Y  +I+   
Sbjct: 176 RTP-ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFF 234

Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K+G + +A  L  +M ++G  PD  ++++V+          +A +FL++
Sbjct: 235 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQ 283


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 1   FDLTEQRFKGNFH----VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
           F + E+     F      Y + ++ +C+    + A       +  G+  D   Y+S+ING
Sbjct: 480 FSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIING 539

Query: 50  LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
                 L++A E+F++M+++G+   +VTY  LIH +  KQ    A      +       N
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           +  Y+ +I+GLC   R +EA K  D++ EKG++P   +Y ILIN  C  G   EA +L  
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659

Query: 170 QMKEKGCFPDSTSFNTVIQ 188
           +M ++   PDS + +  ++
Sbjct: 660 EMLDRKIQPDSFTHSVFLK 678



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 22/203 (10%)

Query: 3   LTEQRFKGNFH---VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L+E + +G +     Y + +NG+ K  E++ A       +  G+ +  + Y+ LING C 
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD--NWEK----QGRFSAMALLQTLERDKY 106
                EA +L ++MV +     L TYN L++    W +    + RFS M       + K+
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML------KSKF 351

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             +I  ++ ++ G CR G   EA    D+L  + LVP V+TYN LI+GLC  G +  A +
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR 411

Query: 167 LLVQMKEKGCFPDSTSFNTVIQG 189
           L  +M ++G FPD  ++  ++ G
Sbjct: 412 LKKEMTDQGLFPDIFTYTILVNG 434



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C    +D+A++       +G+  D+F Y+ L+NG      +  A   F++M+
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  +   YN  I    +      A ++ + +    +  ++  Y++ +  LC+ G +E
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L+ +   GL+P  VTY  +ING  K G + +A ++  +M  KG  P   ++  +I
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572

Query: 188 QGFLVKNETDRASSFLKK 205
                K   D A  +  K
Sbjct: 573 HAHAAKQMLDLAFMYFSK 590



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T+Q    +   Y I +NG  K+  +  A       + KG+  D F Y++ I G     
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIA 474

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
               A  + ++M+A G   +++TYN  +H    +QG F  A  LL+ +  D    +   Y
Sbjct: 475 DTSVAFSMQEEMLAAGFPPDVITYNVFVHA-LCQQGNFEEACDLLENMVSDGLIPDHVTY 533

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G  + G   +AR+  +++  KG+ P VVTY +LI+    K M+  A     +M E
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLE 593

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K    +  ++N +I G  +    D A  +  +
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDE 625



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I+ G+  DV   + ++  L   N L +A  ++  M   GI   +VTYN ++ D++ K
Sbjct: 169 DKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML-DSYCK 227

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A+ LL  ++      N   Y+++++GL + G  E+A+  ++++   GL     T
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           YN LING C+KG+ +EA  L+ +M  +  FP  +++NT++ G
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++  CK   +D A++       +G   +   Y+ L+NGL     L++A  L ++M+
Sbjct: 218 YNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML 277

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
             G+     TYNPLI+   +K     A  L++ +   +    +  Y+ ++ GLC+  +  
Sbjct: 278 NSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVT 337

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
             R +   + +    P +V++N L+ G C+ G I EA  L  ++K +   P   ++NT+I
Sbjct: 338 GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLI 397

Query: 188 QGFLVKNETDRASSFLKKNM 207
            G  +    D A   LKK M
Sbjct: 398 HGLCMWGYLDAALR-LKKEM 416



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           GI   V  Y+++++  C   R+ +A+EL  +M  +G     VTYN L++   +K     A
Sbjct: 210 GIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             L++ +      ++   Y+ +I+G C+ G + EA   ++++  +   P + TYN L+ G
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           LCK   +         M +    PD  SFN+++ G+
Sbjct: 330 LCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 72/132 (54%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FDKM+  G+  ++   N ++    ++     A  +   +E+   +  +  Y+ ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR ++A + L ++ E+G  P  VTYN+L+NGL KKG + +A  L+ +M   G    + 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 182 SFNTVIQGFLVK 193
           ++N +I GF  K
Sbjct: 287 TYNPLINGFCQK 298



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 50/79 (63%)

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A+     + + G+ P VVTYN +++  CK+G + +A +LL +M+E+GC+P+  ++N +
Sbjct: 197 SKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVL 256

Query: 187 IQGFLVKNETDRASSFLKK 205
           + G   K E ++A   +++
Sbjct: 257 VNGLSKKGELEQAKGLIEE 275



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 35/124 (28%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++K +  +V  Y+++INGLC   R+ EA + FD+M  +GI                   +
Sbjct: 592 LEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILP----------------NK 635

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           FS                   Y+++I+  C +G WEEA +   ++ ++ + P   T+++ 
Sbjct: 636 FS-------------------YTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVF 676

Query: 152 INGL 155
           +  L
Sbjct: 677 LKNL 680


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +   Y I ING CK       +   +   +KG+      Y+SLI       +++E  
Sbjct: 285 FSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETD 344

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            LF+  V +GI  ++V YN LI+ +        A  ++  +E+ +   +   Y+ ++ G 
Sbjct: 345 RLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGF 404

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C +GR +EAR  +D+++++G+ P +V+YN LI+G   KG I +A ++  +M +KG  P  
Sbjct: 405 CLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTL 464

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +IQG     + D A + +K+
Sbjct: 465 MTYNALIQGLCKIRQGDDAENLMKE 489



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 12/209 (5%)

Query: 3   LTEQRFKGNF----HVYGIRINGMCKIREIDSAIK-------KG-ICLDVFVYSSLINGL 50
           + E R +G      + Y   I+G CKI  ++ A+K       KG +     +Y++LI G 
Sbjct: 170 MREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGY 229

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   +L  A++  + MV +GI   + TYN L+H  +       A A+L+ ++++ +  ++
Sbjct: 230 CDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDV 289

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++I+G C+ G  ++A +  +++S+KG+    VTY  LI    +KG + E D+L   
Sbjct: 290 FTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNV 349

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             +KG  PD   +N +I       + +RA
Sbjct: 350 AVKKGIRPDVVMYNALINSHCTGGDMERA 378



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 2/171 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  + A+KKGI  DV +Y++LIN  CT   ++ A E+  +M  + I  + +TYN L+   
Sbjct: 345 RLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMR-G 403

Query: 86  WEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
           +   GR   A  L+  + +   + ++  Y+ +I G    G  ++A +  D++ +KG  P 
Sbjct: 404 FCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPT 463

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++TYN LI GLCK     +A+ L+ +M  KG  PD +++ ++I+G   ++E
Sbjct: 464 LMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   IN  C   +++ A        KK I  D   Y++L+ G C   RL EA  L D+M
Sbjct: 361 MYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM 420

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI  +LV+YN LI     K     A+ +   +    +   +  Y+ +I GLC++ + 
Sbjct: 421 TKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQG 480

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGL 155
           ++A   + ++  KG+ P   TY  LI GL
Sbjct: 481 DDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++  +C   F  + ++  LC   +   A+EL  +M         VTYN +I   +  +GR
Sbjct: 110 LRLPLCTTTF--NIMLRHLCATGKPVRALELLRQMPRPNA----VTYNTVIA-GFCARGR 162

Query: 92  FSAM--ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTY 148
             A    + +  ER     +   Y+ +I G C++GR E+A K  D++  KG + P  V Y
Sbjct: 163 VQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMY 222

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N LI G C  G +  A +    M ++G      ++N ++    +      A + L++
Sbjct: 223 NALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEE 279



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           ++ L+ ++ +  +   + + +PL+           A AL   + R +  L    +++++ 
Sbjct: 69  SLRLYAQLKSLSVPIPVASLHPLLSSLPSA----PAFALFADIYRLRLPLCTTTFNIMLR 124

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF- 177
            LC  G+   A + L Q+      P  VTYN +I G C +G +  A +++ +M+E+G   
Sbjct: 125 HLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIA 180

Query: 178 PDSTSFNTVIQGF 190
           PD  ++ T+I G+
Sbjct: 181 PDKYTYATLISGW 193


>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Brachypodium distachyon]
          Length = 476

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 13/211 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFN 54
           D+    F      Y + +   C   +  + I+  + L       D   Y+++I+GLC  +
Sbjct: 151 DMRAGGFAPTTATYNVLLKAHCS--DASAPIEDAVRLFRNIPKPDACSYNTVIDGLCRRS 208

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNW-EKQGRFS-AMALLQTLERDKYELNIEV 112
           R  +A E+F +MVA G+   +VTY  +I  NW  + G    A+ +   + R     N+  
Sbjct: 209 RRADAQEIFSEMVANGVAPTVVTYTTVI--NWLARDGCLDDALKMFDEMGRIGIAPNVVT 266

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           YS +IDGLC+ GR   A + LD+++++  +P  +TY+ +INGLCK+  + EA ++L +M+
Sbjct: 267 YSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMR 326

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +G  PD+  F  +I G         A+++L
Sbjct: 327 LQGRKPDAGLFGKLIVGLCGAGRAVEAANYL 357



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 15  YGIRINGMCK-IREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G+C+  R  D+       +  G+   V  Y+++IN L     L +A+++FD+M 
Sbjct: 197 YNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMG 256

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI   +VTY+ LI D   K GR  SA+ LL  + ++    N   YS VI+GLC+  R 
Sbjct: 257 RIGIAPNVVTYSSLI-DGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRL 315

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF--- 183
            EA + LD++  +G  P    +  LI GLC  G  +EA   L +M   G  P+  ++   
Sbjct: 316 NEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVEPNRVTWSLH 375

Query: 184 ----NTVIQGFLVKNETDR 198
               + V+     K E  R
Sbjct: 376 VRINDAVVTALCAKGEAGR 394



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 14/201 (6%)

Query: 14  VYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   IN + +   +D A+K        GI  +V  YSSLI+GLC   R   A+EL D+M
Sbjct: 231 TYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRM 290

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +      +TY+ +I+   ++     AM +L  +     + +  ++  +I GLC  GR 
Sbjct: 291 AKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRA 350

Query: 127 EEARKKLDQLSEKGLVPGVVTYNI-------LINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            EA   LD++   G+ P  VT+++       ++  LC KG      ++   M+ +G   +
Sbjct: 351 VEAANYLDEMVLSGVEPNRVTWSLHVRINDAVVTALCAKGEAGRTFRVYQSMRTRGISTE 410

Query: 180 STSFNTVIQGFLVKNETDRAS 200
             +F+ +++ F  KN+ ++A+
Sbjct: 411 PGTFHLLVEFFSKKNDLEKAA 431


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +GI ++G+ K      A K       +GI  +   Y+ LI+GLC     ++A +LF
Sbjct: 197 NLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLF 256

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M A G   + V +N L+ D + K GR   A  LL+  E+D + L +  YS +IDGL R
Sbjct: 257 YEMKASGNYPDSVAHNALL-DGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFR 315

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R+ +A +    + ++ + P ++ Y ILI GL K G I +A KLL  M  KG  PD+  
Sbjct: 316 ARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYC 375

Query: 183 FNTVIQGF 190
           +N VI+  
Sbjct: 376 YNAVIKAL 383



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 12/212 (5%)

Query: 5   EQRFKGNFH---VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           E +  GN+     +   ++G CK+  +  A        K G  L +  YSSLI+GL    
Sbjct: 258 EMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRAR 317

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A EL+  M+ + I  +++ Y  LI     K G+   A+ LL+++       +   Y
Sbjct: 318 RYTQAFELYANMLKRNIKPDIILYTILIQ-GLSKAGKIEDALKLLRSMPSKGITPDTYCY 376

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI  LC  G  EE R    ++SE    P   T+ ILI  +C+ G++ +A+++ +++++
Sbjct: 377 NAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEK 436

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P   +FN +I G     E   A   L K
Sbjct: 437 SGCSPSVATFNALIDGLCKSGELKEARLLLHK 468



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+ +D + +  LI+        ++AVE F +M       ++ TYN ++     +   F  
Sbjct: 122 GVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFML 181

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A A+   + +     N+  + +++DGL + GR  +A+K  D ++ +G+ P  VTY ILI+
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLC++G   +A KL  +MK  G +PDS + N ++ GF
Sbjct: 242 GLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGF 278



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T +    N   Y I I+G+C+    + A K        G   D   +++L++G C   
Sbjct: 223 DMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLG 282

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA EL       G    L  Y+ LI   +  +    A  L   + +   + +I +Y+
Sbjct: 283 RMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYT 342

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL + G+ E+A K L  +  KG+ P    YN +I  LC +G++ E   L ++M E 
Sbjct: 343 ILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSET 402

Query: 175 GCFPDSTSFNTVI 187
             FPD+ +   +I
Sbjct: 403 ESFPDACTHTILI 415



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 46/235 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  K +  +Y I I G+ K  +I+ A+K       KGI  D + Y+++I  LC   
Sbjct: 328 NMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRG 387

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+E   L  +M       +  T+  LI           A  +   +E+     ++  ++
Sbjct: 388 LLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFN 447

Query: 115 LVIDGLCRVGRWEEAR---------------------------------------KKLDQ 135
            +IDGLC+ G  +EAR                                       K L  
Sbjct: 448 ALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAH 507

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            ++ G  P +V+YN+LING C++G I  A KLL  ++ KG  PDS ++NT+I G 
Sbjct: 508 FADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGL 562



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 51/247 (20%)

Query: 8   FKGNFHVYGIR-----INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           F+ +  V G+R     I+G+ + R    A       +K+ I  D+ +Y+ LI GL    +
Sbjct: 294 FEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGK 353

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A++L   M ++GIT +   YN +I     +       +L   +   +   +   +++
Sbjct: 354 IEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTI 413

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK--- 172
           +I  +CR G   +A +   ++ + G  P V T+N LI+GLCK G + EA  LL +M+   
Sbjct: 414 LICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGR 473

Query: 173 ------------------------------------EKGCFPDSTSFNTVIQGFLVKNET 196
                                               + G  PD  S+N +I GF  + + 
Sbjct: 474 PASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDI 533

Query: 197 DRASSFL 203
           D A   L
Sbjct: 534 DGALKLL 540



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 77/169 (45%), Gaps = 17/169 (10%)

Query: 14  VYGIRINGMC------KIREIDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I  MC      K  EI   I+K  C   V  +++LI+GLC    LKEA  L  KM
Sbjct: 410 THTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469

Query: 67  VAQGITAELVTYNPLIH------DNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDG 119
              G  A L  +  L H      D   + G    A   L          +I  Y+++I+G
Sbjct: 470 EV-GRPASL--FLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLING 526

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            CR G  + A K L+ L  KGL P  VTYN LINGL + G   EA KL 
Sbjct: 527 FCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 39  DVFVYSSLINGLC---TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-A 94
           DVF Y+ ++  +     F  L  AV  +++M+    +  L T+  L+ D   K+GR S A
Sbjct: 161 DVFTYNVILRIMMREDVFFMLAFAV--YNEMLKCNCSPNLYTFGILM-DGLYKKGRTSDA 217

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             +   +       N   Y+++I GLC+ G  E+ARK   ++   G  P  V +N L++G
Sbjct: 218 QKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDG 277

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKNM 207
            CK G ++EA +LL   ++ G       ++++I G        +A    ++ LK+N+
Sbjct: 278 FCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNI 334



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 39/183 (21%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF---- 63
           Y + ING C+  +ID A+K       KG+  D   Y++LINGL    R +EA +LF    
Sbjct: 520 YNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKD 579

Query: 64  DKMVAQGITAELVTYNP-----LIHDN-WE---------------------KQGRFS-AM 95
           D   +  +   L+T++      L+  N W                      K+G    A+
Sbjct: 580 DFRHSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANEIEQCFKEGETERAL 639

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
             L  L+  K EL +  Y++ + GLC+ GR+ EA      L EK ++    +   LI+GL
Sbjct: 640 RRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGL 699

Query: 156 CKK 158
           CK+
Sbjct: 700 CKR 702


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A       IK G   +V VY++LINGL   ++ ++A+ +F +M
Sbjct: 131 AYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                +  ++TYN LI+   + +    A  L++ L     +  +  YS+++ GLC   R 
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRV 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q++ KG  P V  +NILI+GLC  G +  A  L   M    C P+  S NT+
Sbjct: 251 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTL 310

Query: 187 IQGF 190
           ++GF
Sbjct: 311 MEGF 314



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 42/204 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   YGI ++G CK   ID ++       +KG  LD F YS++INGLC    
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A+ + + M+  G                                      N+ VY+ 
Sbjct: 145 LDRALSVLNDMIKSGCKP-----------------------------------NVHVYNT 169

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GL    ++E+A +   ++      P ++TYN LINGLCK  M  EA  L+ ++ +KG
Sbjct: 170 LINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG 229

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P   +++ +++G  + +  +RA
Sbjct: 230 LDPGVITYSMLMKGLCLDHRVERA 253



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ +   K N HVY   ING+    + + AI+             +  Y++LINGLC   
Sbjct: 154 DMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNE 213

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              EA  L  +++ +G+   ++TY+ L+           A+ L   +    ++ ++++++
Sbjct: 214 MFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHN 273

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GLC VG+ + A      ++     P +V++N L+ G  K G I  A  +  ++   
Sbjct: 274 ILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G  PD  S+N  ++G    N    A  FL
Sbjct: 334 GLEPDIISYNITLKGLCSCNRISDAILFL 362



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 9/200 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNRL 56
           + E +   +  VY   +NG  ++ +I    +    +       V  ++ ++ GL    ++
Sbjct: 16  IVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKV 75

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
            E + +++ M   G   + +TY  L+H  + K G    ++ +L+  E+    L+   YS 
Sbjct: 76  DEVISIWELMKESGFVEDSITYGILVH-GFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+    + A   L+ + + G  P V  YN LINGL       +A ++  +M    
Sbjct: 135 MINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 176 CFPDSTSFNTVIQGFLVKNE 195
           C P   ++NT+I G L KNE
Sbjct: 195 CSPTIITYNTLING-LCKNE 213



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    +  A  ++ K+V   ++ + V YN ++ + + +  +      L  +   +   ++
Sbjct: 1   CESGDIDGAKRVYKKIVESKVSPDAVVYNAML-NGYFRVAKIKDCFELWEMMGSEGNRSV 59

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             +++++ GL   G+ +E     + + E G V   +TY IL++G CK G I ++  +L  
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++KG   D+ +++ +I G   +   DRA S L
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVL 152



 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +++G  RV + ++  +  + +  +G    V ++NI++ GL   G + E   +   M
Sbjct: 27  VYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGKVDEVISIWELM 85

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           KE G   DS ++  ++ GF      D++   L+
Sbjct: 86  KESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118


>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 182

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 85/148 (57%), Gaps = 2/148 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A ELF  + A G +   V Y  L+ D +  QG    A+AL   ++++  +L+   Y++++
Sbjct: 9   AHELFKNLCASGHSPTTVIYITLL-DGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIV 67

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG+C+ G+  +A++    L  +GL P V TYNILI   C +G + EA ++  +M+E G  
Sbjct: 68  DGMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSL 127

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           PD  S+N +IQGFL  N+   A+  + +
Sbjct: 128 PDGCSYNVIIQGFLRHNDLSGATQLIHE 155



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 42/180 (23%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   ++G C    +D A+       K  + LD   Y+ +++G+C   +L +A ELF  +
Sbjct: 27  IYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMCKAGKLNDAKELFSTL 86

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G+  ++ TYN                                   ++I   C  G  
Sbjct: 87  PIEGLQPDVRTYN-----------------------------------ILIKVFCNEGSL 111

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA +   ++ E G +P   +YN++I G  +   +  A +L+ +M +KG   D T+ + V
Sbjct: 112 EEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGATQLIHEMIDKGFSADVTTPSLV 171


>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
 gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK       +     A  +G+ L+   Y+SLINGLC    L EA+ LFD + 
Sbjct: 658 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 717

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G+    VTY  LI DN  K+G F  A  LL ++       NI +Y+ ++DG C++G+ 
Sbjct: 718 NIGLVPSEVTYGILI-DNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQT 776

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A + + +     + P   T + +I G CKKG + EA  +  + K+K    D   F  +
Sbjct: 777 EDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFL 836

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+GF  K   + A   L++
Sbjct: 837 IKGFCTKGRMEEARGLLRE 855



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 91/164 (55%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +DV  Y+ +INGLC    L +A+ L     ++G+T   +TYN LI+   ++     A+ L
Sbjct: 653 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRL 712

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +LE      +   Y ++ID LC+ G + +A K LD +  KGLVP ++ YN +++G CK
Sbjct: 713 FDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCK 772

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            G   +A +++ +       PD+ + +++I+G+  K + + A S
Sbjct: 773 LGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALS 816



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++ +C++ ++D           +G   D   YS+ I+G      L +A+   
Sbjct: 206 NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 265

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV +G+  ++V+Y+ LI D   K+G    A+ LL  + ++  E N+  Y+ +I GLC+
Sbjct: 266 REMVEKGMNRDVVSYSILI-DGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCK 324

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G+ EEA    +++   G+      Y  LI+G+C+KG +  A  +L  M+++G  P   +
Sbjct: 325 MGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILT 384

Query: 183 FNTVIQGFLVKNETDRA 199
           +NTVI G  +      A
Sbjct: 385 YNTVINGLCMAGRVSEA 401



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 3/189 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           D+ ++  + +   Y   ING+C    +  A  + KG+  DV  YS+L++       +   
Sbjct: 372 DMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAV 431

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +E+  + +   I  +LV  N L+           A AL + +       +   Y+ +I G
Sbjct: 432 LEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKG 491

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+ G+ EEA +  ++L  K  V   V YN +I+ LCKKGM+  A ++L+++ EKG + D
Sbjct: 492 YCKTGQIEEALEMFNEL-RKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 550

Query: 180 STSFNTVIQ 188
             +  T++ 
Sbjct: 551 IHTSRTLLH 559



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+C+   ++ A        ++GI   +  Y+++INGLC   R+ EA E     
Sbjct: 349 LYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADE----- 403

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G+  +++TY+ L+    + Q   + + + +     K  +++ + ++++     +G +
Sbjct: 404 VSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAY 463

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA      + E  L P   TY  +I G CK G I EA ++  +++ K     +  +N +
Sbjct: 464 GEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR-KSSVSAAVCYNRI 522

Query: 187 IQGFLVKNETDRASSFL 203
           I     K   D A+  L
Sbjct: 523 IDALCKKGMLDTATEVL 539



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 40/228 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRL 56
           + E     +   Y   I G CK  +I+ A+      +K        Y+ +I+ LC    L
Sbjct: 473 MPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYNRIIDALCKKGML 532

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
             A E+  ++  +G+  ++ T   L+H      G    + L+  LE+   ++ + + +  
Sbjct: 533 DTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDA 592

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLV---PG----------------------------- 144
           I  LC+ G +E A +    +  KGL    P                              
Sbjct: 593 ILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTLSS 652

Query: 145 --VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             V+ Y I+INGLCK+G +++A  L    K +G   ++ ++N++I G 
Sbjct: 653 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGL 700



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 15  YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I+ +CK        + +DS + KG+  ++ +Y+S+++G C   + ++A+ +  + +
Sbjct: 728 YGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKM 787

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +T +  T + +I    +K     A+++    +      +   +  +I G C  GR E
Sbjct: 788 MGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRME 847

Query: 128 EARKKLDQL 136
           EAR  L ++
Sbjct: 848 EARGLLREM 856



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDG 119
           L D +   G     +T+  LI+   EK    +A+ +L+ +      Y  +  V S VI G
Sbjct: 121 LRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISG 180

Query: 120 LCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            C++G+ E A    +   + G LVP +VTY  L++ LC+ G + E   L+ +++++G   
Sbjct: 181 FCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEF 240

Query: 179 DSTSFNTVIQGFL 191
           D   ++  I G+ 
Sbjct: 241 DCVFYSNWIHGYF 253



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 69/188 (36%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
            D FV S++I+G C   + + A+  F+  V  G+                          
Sbjct: 169 FDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVP----------------------- 205

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR---KKLD-------------------- 134
                      N+  Y+ ++  LC++G+ +E R   ++L+                    
Sbjct: 206 -----------NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFK 254

Query: 135 ------------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
                       ++ EKG+   VV+Y+ILI+GL K+G + EA  LL +M ++G  P+  +
Sbjct: 255 GGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLIT 314

Query: 183 FNTVIQGF 190
           +  +I+G 
Sbjct: 315 YTAIIRGL 322



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           + R    +     ++  G +  L + +  +   +  Q     +     L+  +  +N  +
Sbjct: 4   YPRTSSGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRI 63

Query: 113 YSLVIDGLCRVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLC------KKGMIMEAD 165
           YS+V      + R+E+A K ++  +S+  + P     + LI+G         KG+++  D
Sbjct: 64  YSIVSWAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRD 123

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            L    +  G FP S +F ++I  F+ K E D A   L+
Sbjct: 124 CL----RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLE 158



 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 18/145 (12%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   ++G CK+ + + A++         +  D F  SS+I G C    ++EA+ +F
Sbjct: 759 NIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVF 818

Query: 64  DKMVAQGITAELVTYNPLIHD------NWEKQGRFSAMALLQTLERDKYELNIEVY-SLV 116
            +   + I+A+   +  LI          E +G    M + +++ +    ++ E+  S  
Sbjct: 819 TEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESES 878

Query: 117 IDG----LCRVGRWEEARKKLDQLS 137
           I G    LC  GR  +A K LD++S
Sbjct: 879 IRGFLVELCEQGRVPQAIKILDEIS 903


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 32/234 (13%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGI-CLDVFVYSSLINGLCTFN 54
           ++  +  + N + Y I ++G+CK      +R+++  +K G+   DV  Y+SL++  C+  
Sbjct: 346 EMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEG 405

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
               A  + D+M  +G      TYN L+   W K GR + A  LL+ +    Y L+    
Sbjct: 406 NAAAANRILDEMAQKGCAPNSFTYNVLLQSLW-KAGRITEAERLLERMSEKGYSLDTASC 464

Query: 114 SLVIDGLCRV-----------GRWEEARKKLDQLS------------EKGLVPGVVTYNI 150
           +++IDGLCR            G W E    L +L              K  +P  +TY+ 
Sbjct: 465 NIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYST 524

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           L++ LCK+G   EA K L++M  K   PDS  ++T I G+    +T  A   L+
Sbjct: 525 LVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLR 578



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)

Query: 12  FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            H Y    N     R +D   +KG   + F Y+ L+  L    R+ EA  L ++M  +G 
Sbjct: 398 LHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGY 457

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQ--------TLERDKYELNIE------------ 111
           + +  + N +I           AM ++          L R  Y                 
Sbjct: 458 SLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLP 517

Query: 112 ---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               YS ++  LC+ GR++EA+KKL ++  K + P  V Y+  I+G CK G    A K+L
Sbjct: 518 DRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVL 577

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             M++KGC P + ++N +I GF  K+ +D
Sbjct: 578 RDMEKKGCKPSTRTYNLLIWGFREKHNSD 606



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 37  CL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-A 94
           CL D   YS+L++ LC   R  EA +   +M+ + I+ + V Y+  IH  + K G+ S A
Sbjct: 515 CLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIH-GYCKHGKTSLA 573

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           + +L+ +E+   + +   Y+L+I G       +E  K + ++  KG+ P V+TYN LI  
Sbjct: 574 VKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKS 633

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            C++GM+ +A  LL +M +    P+ TSF  +I+ F
Sbjct: 634 FCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAF 669



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 14  VYGIRINGMCKIREIDSA-----IKK--GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + ++G C+   +D A     I +  G    V  Y+  ++GL     + EA EL  +M
Sbjct: 288 TFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREM 347

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+     TYN +I D   K+G+ F    +   ++      ++  Y+ ++   C  G 
Sbjct: 348 AHEGVQPNSYTYN-IIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGN 406

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
              A + LD++++KG  P   TYN+L+  L K G I EA++LL +M EKG   D+ S N 
Sbjct: 407 AAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNI 466

Query: 186 VIQGFLVKNETDRA 199
           +I G    N+ D A
Sbjct: 467 IIDGLCRNNKLDMA 480



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 11/214 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------KGIC-LDVFVYSSLINGLC 51
           + ++    N   +  RI+ +CK   +  A +          +G+   D   +  +++G C
Sbjct: 238 MRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFC 297

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               + EA  L D M   G    + +YN  +           A  LL+ +  +  + N  
Sbjct: 298 EAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSY 357

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y++++DGLC+ G+  + RK  D +    + P VVTY  L++  C +G    A+++L +M
Sbjct: 358 TYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEM 417

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            +KGC P+S ++N ++Q          A   L++
Sbjct: 418 AQKGCAPNSFTYNVLLQSLWKAGRITEAERLLER 451



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 24/175 (13%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-----GITAELVTYNPLIHDNWEKQ 89
           G   DVF  + L+  LC   R++ A  +FD M  +     GI A            + + 
Sbjct: 145 GAAPDVFTRNILLQALCAAGRMELARRVFDAMPERNEFSFGILAR----------GYCRA 194

Query: 90  GR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           GR   A+ +L ++      +N+ V + V+ G CR G+ +EA + ++++ ++GL P VVT+
Sbjct: 195 GRSMDALGVLDSMP----TMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTF 250

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVIQGFLVKNETDRA 199
           N  I+ LCK G +++A ++   M+EK       PD  +F+ ++ GF      D A
Sbjct: 251 NARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEA 305



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 27/203 (13%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA------------ 73
           R ++   +KG  LD    + +I+GLC  N+L  A+++ D M  +G  A            
Sbjct: 447 RLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLL 506

Query: 74  -----------ELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGL 120
                      + +TY+ L+     K+GRF  +   LL+ + +D    ++ +Y   I G 
Sbjct: 507 TDSSSSKRCLPDRITYSTLV-SALCKEGRFDEAKKKLLEMIGKDISPDSV-LYDTFIHGY 564

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G+   A K L  + +KG  P   TYN+LI G  +K    E  KL+ +MK KG  P+ 
Sbjct: 565 CKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNV 624

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N++I+ F  +   ++A   L
Sbjct: 625 MTYNSLIKSFCERGMVNKAMPLL 647



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++ +CK    D A       I K I  D  +Y + I+G C   +   AV++   M
Sbjct: 521 TYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDM 580

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G      TYN LI    EK      + L+  ++      N+  Y+ +I   C  G  
Sbjct: 581 EKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMV 640

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            +A   LD++ +  +VP + ++ +LI   CK      A ++ 
Sbjct: 641 NKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVF 682



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ ++  K +   Y + I G  +    D  +K       KGIC +V  Y+SLI   C   
Sbjct: 579 DMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERG 638

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-----ALLQTLERDKYELN 109
            + +A+ L D+M+   I   + ++  LI   + K   FSA      A L T  + +    
Sbjct: 639 MVNKAMPLLDEMLQNEIVPNITSFELLIK-AFCKTSDFSAAQRVFDASLSTCGQKEV--- 694

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             +YSL+   L   GRW EA   L+ + E  +      Y  +I GLCK   +    +LL 
Sbjct: 695 --LYSLMCTQLSTYGRWLEAMNILETVLELRISIHRFPYKQIIEGLCKVDEVDHGHRLLK 752

Query: 170 QMKEKGCFPDSTSFNTVIQGF 190
            +  KG   D  +F  VI   
Sbjct: 753 LLMVKGYSFDPAAFMPVIDAL 773



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 10/199 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G CK  +   A+K       KG       Y+ LI G    +   E ++L  +M
Sbjct: 556 LYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEM 615

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +GI   ++TYN LI    E+     AM LL  + +++   NI  + L+I   C+   +
Sbjct: 616 KGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDF 675

Query: 127 EEARKKLD-QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             A++  D  LS  G     V Y+++   L   G  +EA  +L  + E         +  
Sbjct: 676 SAAQRVFDASLSTCG--QKEVLYSLMCTQLSTYGRWLEAMNILETVLELRISIHRFPYKQ 733

Query: 186 VIQGFLVKNETDRASSFLK 204
           +I+G    +E D     LK
Sbjct: 734 IIEGLCKVDEVDHGHRLLK 752



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++  LC  GR E AR+  D + E+       ++ IL  G C+ G  M+A  +L  M  
Sbjct: 154 NILLQALCAAGRMELARRVFDAMPERN----EFSFGILARGYCRAGRSMDALGVLDSMPT 209

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                +    NTV+ GF  + + D A   +++
Sbjct: 210 M----NLVVCNTVVAGFCREGQVDEAERLVER 237


>gi|297723045|ref|NP_001173886.1| Os04g0349600 [Oryza sativa Japonica Group]
 gi|255675357|dbj|BAH92614.1| Os04g0349600, partial [Oryza sativa Japonica Group]
          Length = 260

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N ++YG  ++G CK   ID A+        KG+     +Y+ +++GL    R   A ++F
Sbjct: 19  NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMF 78

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+  G T  + TY  ++           A  LL+ L     + +I  +++VI  + +V
Sbjct: 79  HEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKV 138

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR +EA++    +S  GLVP V TYN++I+ L K+    EAD L + +++ G  PDS   
Sbjct: 139 GRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLL 198

Query: 184 NTVIQGFLVKNETDRASSFL 203
           N +++  L K E  +AS++L
Sbjct: 199 NHIVRMLLKKAEVAKASNYL 218



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +ALL  +     E N  +Y  ++DG C+ GR ++A      +  KG+ P  V YNI+++G
Sbjct: 5   IALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHG 64

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L +      A K+  +M E G      ++  V+ G    N TD A+  L+K
Sbjct: 65  LFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEK 115



 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   YG+ + G+C+    D A           +  D+  ++ +I+ +    R +EA ELF
Sbjct: 89  SIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELF 148

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +   G+   + TYN +I +  +++    A  L  ++E+     +  + + ++  L + 
Sbjct: 149 AAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKK 208

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               +A   L  + E  L     T ++L +   ++G   E  KLL
Sbjct: 209 AEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIKLL 253


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 91/171 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   D   +++LING C   RL EA  + D+M  +G+    VT N ++H    ++    A
Sbjct: 417 GFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDA 476

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             LL +  +  Y ++   Y  +I G  + G+  EA K  D++ EK ++P ++TYN +I G
Sbjct: 477 YKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGG 536

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC  G   ++   L ++ E G  PD T++NT+I G+  + + ++A  F  K
Sbjct: 537 LCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNK 587



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTF 53
            D+       N + + I ++G CK+       + ID   +  +  DV+ Y+ LI GLC  
Sbjct: 271 LDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKD 330

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            ++ EA  L D+M    +  ++VTYN LI+  ++         L+  +E    + N   Y
Sbjct: 331 GKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTY 390

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++V+    + G+ + A  +L ++ E G  P  VT+N LING CK G + EA +++ +M  
Sbjct: 391 NVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSR 450

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG   +S + NT++     + + D A   L
Sbjct: 451 KGLKMNSVTLNTILHTLCGERKLDDAYKLL 480



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   +   ING CK        R +D   +KG+ ++    +++++ LC   +
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 472

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A +L      +G   + V+Y  LI   ++      AM L   ++  +   +I  Y+ 
Sbjct: 473 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNT 532

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC  G+ +++  KL++L E GLVP   TYN +I G C++G + +A +   +M +K 
Sbjct: 533 MIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKS 592

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  + N +++G   +   D+A
Sbjct: 593 FKPDLFTCNILLRGLCTEGMLDKA 616



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK G+ ++   ++ LI G C  N+L EA+ L  KM       + V+YN ++ D   K+G+
Sbjct: 204 IKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTIL-DVLCKKGK 262

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            + A  LL  ++ +    N   +++++ G C++G  +EA + +D +++  ++P V TYN+
Sbjct: 263 LNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNM 322

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           LI GLCK G I EA +L  +M+     PD  ++NT+I G
Sbjct: 323 LIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLING 361



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 46/230 (20%)

Query: 14  VYGIRINGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G+CK  +ID A +         +  DV  Y++LING    +   +  EL DKM
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM 378

Query: 67  VAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
             +G+    VTYN ++   W  K+G+  +A   L+ +E   +  +   ++ +I+G C+ G
Sbjct: 379 EGKGVKPNAVTYNVVVK--WYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAG 436

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLC---------------------------- 156
           R  EA + +D++S KGL    VT N +++ LC                            
Sbjct: 437 RLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYG 496

Query: 157 -------KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                  K G  +EA KL  +MKEK   P   ++NT+I G     +TD++
Sbjct: 497 TLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQS 546



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 110/215 (51%), Gaps = 15/215 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICL-DVFVYSSLINGLCTFN 54
           D+ +   K N + + I I G C   ++  AI      K   C  D   Y+++++ LC   
Sbjct: 202 DVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKG 261

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHD----NWEKQGRFSAMALLQTLERDKYELNI 110
           +L EA +L   M   G+     T+N L+       W K+    A  ++  + ++    ++
Sbjct: 262 KLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKE----AAQVIDLMAQNNVLPDV 317

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+++I GLC+ G+ +EA +  D++    L+P VVTYN LING       ++  +L+ +
Sbjct: 318 WTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDK 377

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M+ KG  P++ ++N V++ ++ + + D A + L+K
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRK 412



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----H 83
           D   +K I   +  Y+++I GLC   +  ++++  ++++  G+  +  TYN +I      
Sbjct: 516 DEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCRE 575

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
              EK  +F    + ++ + D +  NI     ++ GLC  G  ++A K  +    KG   
Sbjct: 576 GQVEKAFQFHNKMVKKSFKPDLFTCNI-----LLRGLCTEGMLDKALKLFNTWISKGKAI 630

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             VTYN +I+GLCK+    EA  LL +M+EK   PD  ++N ++           A  F+
Sbjct: 631 DAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFM 690

Query: 204 KK 205
            +
Sbjct: 691 SR 692



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 32/214 (14%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G C+  +++ A       +KK    D+F  + L+ GLCT   L +A++LF+  
Sbjct: 564 TYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW 623

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +++G   + VTYN +I     K+ RF  A  LL  +E  K   +   Y+ ++  L   GR
Sbjct: 624 ISKGKAIDAVTYNTII-SGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGR 682

Query: 126 WEEARKKLDQLSEKGLV-----------------------PGVVTYNILINGLCKKGMIM 162
            +EA + + ++ E+G +                       P  VT++  IN LC +G   
Sbjct: 683 MKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYK 742

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +A  ++ +  +KG     +++ ++++G + + ++
Sbjct: 743 DAMHMVQESTQKGITLHKSTYISLMEGLIKRRKS 776


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           + + Y   + G+CK   +D A          KG+C DV  Y+++I  LCT +  K A +L
Sbjct: 288 DVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLC-DVVSYNTIIKALCTASHTKRAYKL 346

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F++M  +GIT ++VT+  LI     +     A  LL  +       +  +Y+ ++D LC+
Sbjct: 347 FEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCK 406

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+   A      + E G+ P VV+YN LINGLC+   + EA  L   M   G  PD  +
Sbjct: 407 TGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVT 466

Query: 183 FNTVIQGFL 191
           F  +I G +
Sbjct: 467 FKLIIGGLI 475



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 17/218 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+    +  +   Y I +N +C   ++D A       ++KG   D+  Y+ +INGLC   
Sbjct: 104 DMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAG 163

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI----HDNWEKQGRFS-AMALLQTLERDKYELN 109
           R   AVE++  MV +G + +      L+    HD     G+   A  L     R + + +
Sbjct: 164 RFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHD-----GKVDLAYELTVGAMRGRIKFS 218

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
             +Y+ +I+G C+ G  ++A+  +  +   G  P +VTYN+L+N  C + ++ EA+ L+ 
Sbjct: 219 KSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMK 278

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +M+  G  PD  S+N +++G    N  D+A   +   M
Sbjct: 279 KMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKM 316



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 21  GMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73
           G+C   ++D        A++  I     +Y+SLING C    + +A  +   M   G   
Sbjct: 193 GLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEP 252

Query: 74  ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
           +LVTYN L++   ++     A  L++ +ER   E ++  Y+ ++ GLC+  R ++A   +
Sbjct: 253 DLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMM 312

Query: 134 -DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
            +++  KGL   VV+YN +I  LC       A KL  +M  KG  PD  +F  +I+ FL 
Sbjct: 313 VNKMEAKGLCD-VVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLR 371

Query: 193 KNETDRASSFLKK 205
           +  ++ A   L +
Sbjct: 372 EGSSNIAKKLLDQ 384



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E+  + +   Y I ING+C+    DSA+       +KG   D     +L+ GLC   +
Sbjct: 140 MVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGK 199

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A EL    +   I      YN LI+   +      A +++  + R+  E ++  Y++
Sbjct: 200 VDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNV 259

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++  C     EEA   + ++   G+ P V +YN L+ GLCK   + +A  ++V   E  
Sbjct: 260 LLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAK 319

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
              D  S+NT+I+     + T RA
Sbjct: 320 GLCDVVSYNTIIKALCTASHTKRA 343



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+  I  L   +R   A + +D+M+ QG +    TY+  I    + +       LL+ ++
Sbjct: 47  YNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMD 106

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           R  Y  +I  Y++ ++ LC   + + A   +  + EKG  P +VTY I+INGLC+ G   
Sbjct: 107 RLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFD 166

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            A ++   M  KG  PD  +   ++ G     + D A
Sbjct: 167 SAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLA 203



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D     G+  D  +Y+++++ LC   ++  A  +F  MV  GIT ++V+YN LI+    
Sbjct: 382 LDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCR 441

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 AM L + +       +   + L+I GL    +   A +  DQ+ EKG       
Sbjct: 442 ASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAV 501

Query: 148 YNILINGL 155
              L+N +
Sbjct: 502 SETLVNAI 509


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C +  ++ A++       KG   D   Y +++  LC   R+KE   L 
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360

Query: 64  DKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +KM+    +  + VTYN  +H   +      A+  L+  E  ++ ++   YS ++   CR
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++ ++++  KG +P VVTY  +INGLC++  + +A K+L QM + GC P++ S
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 480

Query: 183 FNTVIQGFLVKN 194
           +  ++ G L KN
Sbjct: 481 YTALLNG-LCKN 491



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 7/206 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E+RF+ +   Y   ++  C+   +D A         KG   DV  Y+S+INGLC   ++ 
Sbjct: 401 ERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVD 460

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A ++  +M   G     V+Y  L++   +      A  ++   E D +  N   YS+++
Sbjct: 461 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLM 520

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G  R G+  EA   + ++ +KG  P  V  N+LI  LC++  + EA + + Q    GC 
Sbjct: 521 HGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA 580

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
            +  +F TVI GF  K++ + A S L
Sbjct: 581 VNVVNFTTVIHGFCQKDDLEAALSLL 606



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 94/168 (55%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D   YS++++  C   R+ +A E+ ++M ++G   ++VTY  +I+   +++    A  +
Sbjct: 406 VDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKM 465

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ + +   + N   Y+ +++GLC+ G   EAR+ ++   E   +P  +TY++L++G  +
Sbjct: 466 LRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRR 525

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G   EA  L+ +M +KG FP     N +IQ    + + D A  F+++
Sbjct: 526 EGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQ 573



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ LI G C  +RL++A+EL  +M  +G + + ++Y  ++    +++       L+
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360

Query: 99  QTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + + +D   L  +V Y+  +  L + G  +EA + L +  E+      V Y+ +++  C+
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G + +A +++ +M  KGC PD  ++ +VI G   + + D+A   L++
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQ 468



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 44/220 (20%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+C+ R++D A        K G   +   Y++L+NGLC      EA E+ +  
Sbjct: 445 TYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMS 504

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA--------------------LLQTL-ERDK 105
                    +TY+ L+H  + ++G+ S                       L+Q+L + +K
Sbjct: 505 EEDWWIPNAITYSVLMH-GFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEK 563

Query: 106 YE---------------LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
            +               +N+  ++ VI G C+    E A   LD +      P VVTY  
Sbjct: 564 VDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTT 623

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +I+ L KKG I EA KL ++M   G  P   ++ TVI  +
Sbjct: 624 IIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQY 663



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE+   IKKG        + LI  LC   ++ EA    ++ +  G    +V +  +IH 
Sbjct: 536 VREM---IKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 592

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +K    +A++LL  +       ++  Y+ +ID L + GR EEA K   ++   GL+P 
Sbjct: 593 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPT 652

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            VTY  +I+  C+ G + +  KLL +M   + C    T++N VI+        ++A   L
Sbjct: 653 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLL 709

Query: 204 KK 205
            K
Sbjct: 710 GK 711



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 85  NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++ + G+  +AM +L  +++   E ++ + +  I  L    R ++A + L+++    + P
Sbjct: 241 SYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEP 300

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V+TYN LI G C    + +A +L+ +M  KGC PD  S+ TV+ GFL K +  +    L
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVM-GFLCKEKRIKEVRLL 359

Query: 204 KKNM 207
            + M
Sbjct: 360 MEKM 363



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+  ++++A+             DV  Y+++I+ L    R++EA +L  KM+  G+
Sbjct: 590 IHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGL 649

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLER--DKYELNIEVYSLVIDGLCRVGRWEEA 129
               VTY  +IH  + + GR     LL+ LE+   + E     Y+ VI+ LC  G  E+A
Sbjct: 650 IPTPVTYRTVIH-QYCRMGRVED--LLKLLEKMLSRQECRT-AYNQVIEKLCSFGNLEQA 705

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L ++          T ++LI     KG+ + +  +  +M  +   PD      V + 
Sbjct: 706 YKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKK 765

Query: 190 FLVKNETDRASSFL 203
            +++ +++ A   +
Sbjct: 766 LMLEGKSEEADKLI 779


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I+G+CK   +  A       +  G+  D   Y+ LI+  C    L+EA +L + M
Sbjct: 520 TYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGM 579

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+ G+   +VTY  L+H    +   +SA    + +     E N   Y+++I  LC  GR 
Sbjct: 580 VSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRT 639

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A +   ++ E+GL P   TY +LI+G C++G   +A +L  +M + G  PD  + N +
Sbjct: 640 PLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 699

Query: 187 IQGF 190
            +GF
Sbjct: 700 FKGF 703



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 24  KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
           ++RE+   + KGI  D   Y+ +I+GLC    LK+A  L  KMV+ G+  + +TY  LIH
Sbjct: 504 QLREV--MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIH 561

Query: 84  DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
            + E+     A  LL  +  D  + ++  Y++++   CR G    A     ++ + G+ P
Sbjct: 562 AHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEP 621

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
             +TYN+LI+ LC  G    A +   +M E+G  P+  ++  +I G
Sbjct: 622 NEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDG 667



 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 86/166 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +GI   V  Y+++I+GL    + + A   F +M A G+  +++TYN L++   +      
Sbjct: 337 EGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKE 396

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+ LL  L R      +  Y+ +IDG CR+G   EAR+  +++ E+G  P V TY IL+N
Sbjct: 397 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G  K   +  A +   +M  KG  PD  ++NT I   L  + T  A
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMA 502



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ EQ    +   Y I +NG  K+R +       D  + KG+  D F Y++ I    T +
Sbjct: 438 EMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLS 497

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVY 113
               A +L + M+ +GI  + VTYN +I D   K G       L+T +  D  + +   Y
Sbjct: 498 STPMAFQLREVMMLKGIYPDTVTYNVII-DGLCKTGNLKDAKRLKTKMVSDGLQPDCITY 556

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   C  G   EARK L+ +   GL P VVTY IL++  C++G +  A     +M +
Sbjct: 557 TCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLD 616

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            G  P+  ++N +I    +   T  A
Sbjct: 617 VGIEPNEITYNVLIHALCMTGRTPLA 642



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 46/219 (21%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   +N  CK   +  A+       + G+   V  Y++LI+G C    L EA  L ++M
Sbjct: 380 TYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEM 439

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-------LLQTLERDKYELNIEV------- 112
           V QG   ++ TY  L+  N  ++ R  AMA       L + L+ D +  N  +       
Sbjct: 440 VEQGCFPDVCTYTILM--NGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLS 497

Query: 113 -----------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
                                  Y+++IDGLC+ G  ++A++   ++   GL P  +TY 
Sbjct: 498 STPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYT 557

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            LI+  C++G++ EA KLL  M   G  P   ++  ++ 
Sbjct: 558 CLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVH 596



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G  L+   ++ +I+ L     L+ AV+L D M      A   TYNPLI    E+     A
Sbjct: 269 GFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKA 327

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            AL   +E +     +  Y+ +I GL +  + E A+ K  ++   GL+P V+TYN L+N 
Sbjct: 328 EALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNR 387

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK G + EA  LL  ++  G  P   ++NT+I G+
Sbjct: 388 YCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY 423



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
            G+  DV   + ++  L    R  +   ++ +M+   +   +VTYN L+ D++ K+GR  
Sbjct: 196 HGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLL-DSFLKEGRKD 254

Query: 93  SAMALLQTLERD--KYELNIEVYSLVIDGLCRVGRWEEARKKLD--QLSEKGLVPGVVTY 148
            A  LL+ +E     + LN   +++VI  L R G  E A K +D  +LS+K       TY
Sbjct: 255 EASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKA---SSFTY 311

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           N LI  L ++G + +A+ L ++M+ +G  P   ++N +I G L   + + A
Sbjct: 312 NPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAA 362


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 110/214 (51%), Gaps = 13/214 (6%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKG--ICLDVFVYSSLIN-GLC 51
           ++   R   +   Y   I+G+CK   ++ A       I++G     D+  Y++LIN G+C
Sbjct: 122 NMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGIC 181

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
               ++EA+E+ D M   G   +++TYN +IH          A  +L+T+       ++ 
Sbjct: 182 KDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSP---DLV 238

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            ++ ++DG C+ G    A + L+++  + ++P V+TY IL+NGLC+ G +  A  LL ++
Sbjct: 239 TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 298

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             +G  PD  ++ +++ G     E + A   +K+
Sbjct: 299 VRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKE 332



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 16/205 (7%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I +NG+C++ ++  A       +++G   DV  Y+SL++GLC    ++EA +L  +M 
Sbjct: 275 YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMS 334

Query: 68  AQGITAELVTYN---PLIHDN-----WEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           A+ I AE+V+ N   PL   N       K G  S A++L+  L    Y  ++  Y+ +ID
Sbjct: 335 AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLID 394

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           GLC+  R  EA    D+++  G  P  VT   ++ GLC+ G + +A  L+V+M  K   P
Sbjct: 395 GLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 454

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
           +   + ++I G    +  D A   L
Sbjct: 455 NVVVYTSLIDGLCKSDRMDDACVVL 479



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 102/185 (55%), Gaps = 13/185 (7%)

Query: 15  YGIRIN-GMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   IN G+CK  +++ A++        G   DV  Y+S+I+ LC   R+ EA E+   M
Sbjct: 172 YNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM 231

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
                + +LVT+N L+ D + K G    A+ +L+ + R+    ++  Y+++++GLCRVG+
Sbjct: 232 ---SCSPDLVTFNTLL-DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 287

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A   L+++  +G +P V+ Y  L++GLCK G I EA KL+ +M  +    +  S N 
Sbjct: 288 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINM 347

Query: 186 VIQGF 190
           V   F
Sbjct: 348 VPPLF 352



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G   ++  +  LI G C   +   A+E    +    +  ++  +N LIH  ++    
Sbjct: 54  LHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNP 113

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYN 149
             A+ L + +E  +   +I  Y+ VI GLC+ G  E+AR+ L+++  +G    P +VTYN
Sbjct: 114 DQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYN 173

Query: 150 ILIN-GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            LIN G+CK G + EA ++L  MK  G  PD  ++N++I    V      A+  LK
Sbjct: 174 TLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILK 229



 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I + G+ K   I  A+        +G   DV  Y++LI+GLC  NR++EA +L D+M 
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 413

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + G     VT   ++     + GR   A +L+  + R ++  N+ VY+ +IDGLC+  R 
Sbjct: 414 SLGCFPNDVTLGSVVF-GLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 472

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   LD +  +G+      Y  LI  +   G + EA  +  +M  +G  PD ++  T+
Sbjct: 473 DDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 2/158 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV  Y+ L++ L          +++  ++  G +  LVT+  LI  N +      A+  L
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + L+      ++ +++ +I GL + G  ++A K  + +    + P + TYN +I+GLCK 
Sbjct: 86  RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKS 145

Query: 159 GMIMEADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKN 194
           G + +A +LL +M  +G    PD  ++NT+I   + K+
Sbjct: 146 GNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKD 183



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 54  NRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           +R   A++ FD    Q G   ++ +YN L+    +   +F    + + L       N+  
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVT 64

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           + ++I G C+ G+   A + L  L E  + P V  +N LI+GL K G   +A KL   M+
Sbjct: 65  FKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENME 124

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                PD  ++NTVI G       ++A   L++
Sbjct: 125 SSRVNPDIFTYNTVISGLCKSGNLEKARELLEE 157


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 109/202 (53%), Gaps = 13/202 (6%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGL---CTFNRLK 57
            + N   Y   +   C+++ ++ A       ++KG+  +V  Y++LI+G    C F+R  
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR-- 480

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
              ++ ++M  +G+   +++Y  LI+   +      A  +L  +       N ++Y+++I
Sbjct: 481 -CFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLI 539

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           DG C  G+ ++A +  D++  + +VP +VTYNILINGLCKKG +MEA+ L  ++  KG  
Sbjct: 540 DGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLS 599

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
            D  ++N++I G+       +A
Sbjct: 600 FDVITYNSLISGYSSAGNVQKA 621



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E   + +  +YG  I    K+ ++  AI       + G+   VFVY+ +I GLC   
Sbjct: 172 EIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEK 231

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+K+A +LFD+M+ + +    +TYN LI D + K G+   A  + + ++ +  E  I  +
Sbjct: 232 RMKDAEKLFDEMLDRRVAPNRITYNTLI-DGYCKVGQLEEAFNIRERMKVENVEPTIITF 290

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY------------------------- 148
           + +++GLCR    EEA++ L+++   G VP   TY                         
Sbjct: 291 NSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVR 350

Query: 149 ----------NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                     +IL+N LCK+G + +A+++L +  E G  P    FNT++ G+    + ++
Sbjct: 351 KGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINK 410

Query: 199 ASSFLKK 205
           A + ++K
Sbjct: 411 AYTTIEK 417



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 8/208 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K N   YG  IN +CK   I  A       + +G+  +  +Y+ LI+G C   
Sbjct: 487 EMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAG 546

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +LK+A   FD+MVA+ I   LVTYN LI+   +K     A  L   + R     ++  Y+
Sbjct: 547 KLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYN 606

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G    G  ++A +  + + + G+ P + TY+ LI G  K+G+++  +K+  +M + 
Sbjct: 607 SLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-VEKIYQEMLQM 665

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
              PD   +N +I  ++   +  +A S 
Sbjct: 666 NLVPDRVIYNALIHCYVEHGDVQKACSL 693



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 16  GIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
            I +N +CK   ++ A       ++ G+      +++++NG C    + +A    +KM A
Sbjct: 361 SILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEA 420

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
            G+    VTYN L+    E +    A   ++ +       N+E Y+ +IDG  R   ++ 
Sbjct: 421 VGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR 480

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             + L+++ +KGL P V++Y  LIN LCK   I+EA+ +L  M  +G  P++  +N +I 
Sbjct: 481 CFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLID 540

Query: 189 GFLVKNETDRASSFL 203
           G  +  +   A  F 
Sbjct: 541 GSCIAGKLKDAFRFF 555



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++R   N   Y   I+G CK+ +++ A         + +   +  ++SL+NGLC   
Sbjct: 242 EMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQ 301

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++EA  + ++M   G   +  TY  L   + +     +++ L +   R   ++     S
Sbjct: 302 MMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCS 361

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++++ LC+ G  E+A + L +  E GL P  V +N ++NG C+ G I +A   + +M+  
Sbjct: 362 ILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAV 421

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  P+  ++N++++ F      + A   +KK
Sbjct: 422 GLRPNHVTYNSLVKKFCEMKNMEEAEKCIKK 452



 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+   V   +  +  L +  R ++ ++LF ++V  G+  +   Y   I    +     
Sbjct: 140 KDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLK 199

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L+  ++R      + VY++VI GLC+  R ++A K  D++ ++ + P  +TYN LI
Sbjct: 200 RAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLI 259

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G CK G + EA  +  +MK +   P   +FN+++ G       + A   L++
Sbjct: 260 DGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEE 312



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I ING+CK  ++  A        +KG+  DV  Y+SLI+G  +   +++A+EL++ M
Sbjct: 569 TYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETM 628

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE----VYSLVIDGLCR 122
              GI   L TY+ LI     K+G    + L++ + ++  ++N+     +Y+ +I     
Sbjct: 629 KKSGIKPTLNTYHRLIA-GCGKEG----LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVE 683

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A      +  +G+ P  +TYN LI G  K+G + +   L+  MK +G  P + +
Sbjct: 684 HGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTET 743

Query: 183 FNTVIQG 189
           ++ +I G
Sbjct: 744 YDILIVG 750



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           + A++KG+ +  +  S L+N LC    +++A E+  K +  G+    V +N +++   + 
Sbjct: 346 EEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQV 405

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A   ++ +E      N   Y+ ++   C +   EEA K + ++ EKG++P V TY
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETY 465

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           N LI+G  +  +     ++L +M++KG  P+  S+  +I
Sbjct: 466 NTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLI 504



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-L 97
           D  +Y++LI+       +++A  L   M AQGI  + +TYN LI  ++ K+GR   +  L
Sbjct: 670 DRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHF-KEGRMHKVKNL 728

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  ++        E Y ++I G C++  ++ A     ++ E G  P V   + LI GL +
Sbjct: 729 VNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLRE 788

Query: 158 KGMIMEADKLLVQMKEKG 175
           +G   +AD +  +M  KG
Sbjct: 789 EGRSHDADVICSEMNMKG 806



 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 35/129 (27%)

Query: 97  LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL--------------- 141
           L   +++D    ++   +L ++ L    R+E+  +   ++ E GL               
Sbjct: 134 LYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAV 193

Query: 142 --------------------VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
                                PGV  YN++I GLCK+  + +A+KL  +M ++   P+  
Sbjct: 194 KLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRI 253

Query: 182 SFNTVIQGF 190
           ++NT+I G+
Sbjct: 254 TYNTLIDGY 262


>gi|194699862|gb|ACF84015.1| unknown [Zea mays]
 gi|414886155|tpg|DAA62169.1| TPA: rf1 protein [Zea mays]
          Length = 456

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N +VY   I G+C+  ++D+A+        K  + LD  VY++L+  L    R    V L
Sbjct: 215 NVYVYTSLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGL 274

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLC 121
            ++M   G+ A+ V YN ++    E +   +A  A+L  ++++  + +   Y+ ++ GLC
Sbjct: 275 LEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLC 334

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++GRW +A + ++ +  +G  P VVTY +L +G+C     +EA+++L +M  KG  P + 
Sbjct: 335 KLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGMCAAEEFLEANQVLDEMVFKGFAPSND 394

Query: 182 SFNTVIQGF 190
                +QG 
Sbjct: 395 GAQKFVQGI 403



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 16/202 (7%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +G  +  +C   +++ A         +  +  +V+VY+SLI GLC    +  AV L ++M
Sbjct: 183 FGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAVALKEEM 242

Query: 67  VAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +  +  +   Y  L+   ++   + + + LL+ ++      +  VY+ ++ G C   +
Sbjct: 243 AGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEK 302

Query: 126 -WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
               A   LD + + G     V+YN L+ GLCK G   +A +L+  M  +GC PD  ++ 
Sbjct: 303 DLAAAFAVLDDMQKNGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYR 362

Query: 185 TVIQGFLVKNETDRASSFLKKN 206
            +  G     E      FL+ N
Sbjct: 363 MLFDGMCAAEE------FLEAN 378



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWE 87
           D  +++GI   V  + +L+  LC   +L+ A E+ + MV Q  +   +  Y  LI    E
Sbjct: 169 DEMLRRGIAPTVVTFGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYTSLIKGLCE 228

Query: 88  KQGRFSAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K    +A+AL + +  +    L+  VY+ ++  L +VGR       L+++   G+V   V
Sbjct: 229 KGDVDAAVALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTV 288

Query: 147 TYNILINGLCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            YN ++ G C+ +  +  A  +L  M++ GC  D+ S+NT++ G 
Sbjct: 289 VYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGL 333



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   D   Y+ L+        L  A  +FD+M+ +GI   +VT+  L+           A
Sbjct: 140 GTPPDACTYNILMRAAAASGSLAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLEGA 199

Query: 95  MALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILI 152
             + + + R  + L N+ VY+ +I GLC  G  + A    ++++ K  LV     Y  L+
Sbjct: 200 FEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYATLV 259

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             L + G       LL +MK  G   D+  +N ++ GF  ++E D A++F
Sbjct: 260 RALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGF-CEDEKDLAAAF 308



 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL-VQM 171
           Y++++      G    AR   D++  +G+ P VVT+  L+  LC  G +  A ++  V +
Sbjct: 148 YNILMRAAAASGSLAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLEGAFEVKEVMV 207

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++    P+   + ++I+G   K + D A + LK+ M
Sbjct: 208 RQYHVLPNVYVYTSLIKGLCEKGDVDAAVA-LKEEM 242


>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 184



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIBEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C    ID A       ++KG+   V  Y+++++GL    R  EA EL+  M
Sbjct: 551 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 610

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++ TYN +++   +      A  + Q+L     +LNI  ++++I  L + GR 
Sbjct: 611 INSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 670

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A      +   GLVP VVTY ++   L ++G + E D L   M++ G  P+S   N +
Sbjct: 671 EDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 730

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L + +  RA ++L K
Sbjct: 731 VRRLLHRGDISRAGAYLSK 749



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 17/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E     + H++ I  +   K   ID A+       + G+  +V  Y +LI+ LC   R
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNI 110
           + +A   F++M+ +G+T  +V +N L++     D WE+     A  L+  +       N 
Sbjct: 425 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER-----AEELVYEMLDQGICPNA 479

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             ++ +I  LC VGR  E R+ +D +   G+ P   +Y  LI+G C  G   EA+K+   
Sbjct: 480 VFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDG 539

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M   G  P   ++NT++ G+   +  D A    ++
Sbjct: 540 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 574



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 89/207 (42%), Gaps = 7/207 (3%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I ING     ++D         I +GI  DV  Y+++I+GLC       
Sbjct: 193 RRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDR 252

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F +M+  G      TYN LIH           + +L+ +     + +   Y  +++
Sbjct: 253 AEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN 312

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+ GR  EAR   D +  KG+ P V TY ILI+G   KG + E    L  M E G  P
Sbjct: 313 YLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSP 372

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D   FN     +      D+A     K
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNK 399



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 44/228 (19%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +  FK N + Y   I+G   I +    ++       +G+  D + Y SL+N LC   R
Sbjct: 260 MIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGR 319

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---------------------- 93
            +EA   FD M+ +GI  ++ TY  LIH  +  +G  S                      
Sbjct: 320 CREARFFFDSMIRKGIKPKVSTYGILIH-GYATKGALSEMHSFLDLMVENGLSPDHHIFN 378

Query: 94  --------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                         AM +   + +     N+  Y  +ID LC++GR ++A  K +Q+  +
Sbjct: 379 IFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINE 438

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G+ P +V +N L+ GLC       A++L+ +M ++G  P++  FNT+I
Sbjct: 439 GVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 486



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 44/241 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++ +  K + + YG  +N +CK    RE     DS I+KGI   V  Y  LI+G  T  
Sbjct: 294 EMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKG 353

Query: 55  RLKE-----------------------------------AVELFDKMVAQGITAELVTYN 79
            L E                                   A+++F+KM   G++  +V Y 
Sbjct: 354 ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYG 413

Query: 80  PLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
            LI D   K GR   A      +  +    NI V++ ++ GLC V +WE A + + ++ +
Sbjct: 414 ALI-DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLD 472

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G+ P  V +N LI  LC  G +ME  +L+  M+  G  PD+ S+  +I G+ +   TD 
Sbjct: 473 QGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDE 532

Query: 199 A 199
           A
Sbjct: 533 A 533



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 15  YGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           Y I + G+C  +  + A++          +    +V  YS +ING  T  ++ +   LF 
Sbjct: 164 YTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFL 223

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M+ +GI  ++VTY  +I    + Q    A  + Q +  + ++ N   Y+ +I G   +G
Sbjct: 224 EMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIG 283

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +W+E  + L+++S +GL P   TY  L+N LCK G   EA      M  KG  P  +++ 
Sbjct: 284 KWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYG 343

Query: 185 TVIQGFLVKNETDRASSFL 203
            +I G+  K       SFL
Sbjct: 344 ILIHGYATKGALSEMHSFL 362



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTF 53
           +++ +Q    N   +   I  +C +       R ID     G+  D F Y+ LI+G C  
Sbjct: 468 YEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLT 527

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R  EA ++FD MV+ G++   VTYN L+H          A  L + + R      +  Y
Sbjct: 528 GRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 587

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++ GL +  R+ EA++    +   G    + TYNI++NGLCK   + EA K+   +  
Sbjct: 588 NTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 647

Query: 174 KGCFPDSTSFNTVIQGFLVK 193
           KG   +  +F T++ G L+K
Sbjct: 648 KGLQLNIITF-TIMIGALLK 666



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE--------RDKYE 107
           L +A++LFD+++     A +  +N L+      + R S+ + L             DK  
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLL--TAVSRARCSSASELAVSHFNRMVRECSDKVA 87

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DK 166
            N+  YS++I   CR+G  E        + + G     +  N L+ GLC    + EA D 
Sbjct: 88  PNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDV 147

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LL +M E GC PD+ S+  +++G   +   + A   L 
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLH 185



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 59  AVELFDKMV---AQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-------LERDKYEL 108
           AV  F++MV   +  +   L TY+ LI       GRF  M  L+        + +  + +
Sbjct: 71  AVSHFNRMVRECSDKVAPNLCTYSILI-------GRFCRMGHLEHGFAAFGLILKTGWRM 123

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQ-LSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
           +    + ++ GLC   R  EA   L Q + E G +P  V+Y IL+ GLC +    EA +L
Sbjct: 124 DHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALEL 183

Query: 168 LVQMKE---KGCFPDSTSFNTVIQGFLVKNETDRA 199
           L  M +   + C P+  S++ VI GF  + + D+ 
Sbjct: 184 LHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKP 218



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + + Y I +NG+CK   +D A K       KG+ L++  ++ +I  L    R ++A++
Sbjct: 616 KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMD 675

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGL 120
           LF  + A G+   +VTY  L+ +N  ++G      +L   +E++    N ++ + ++  L
Sbjct: 676 LFAAIPANGLVPNVVTYR-LVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              G    A   L +L E+       T ++L++
Sbjct: 735 LHRGDISRAGAYLSKLDERNFSVEASTTSLLMS 767


>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+ +CK   +D A+       KKGI L+++ Y+S+INGLC    L +A  LFD + 
Sbjct: 642 YSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLE 701

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +    +TY  LI    ++     A  L + +    +  N+ VY+ +IDG C+ G  E
Sbjct: 702 KIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNME 761

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  L  + + P   T + LING C KG +  A     + K+K   PD   F  ++
Sbjct: 762 EALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLV 821

Query: 188 QGFLVKNETDRASSFLKK 205
           +G   K   + A   L++
Sbjct: 822 RGLCAKGRMEEARGILRE 839



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           IR+    I+KGI  D   Y+ LI+G      +++A+   +KM   G+   LVTY  ++  
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLG 237

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +K     A  L + +E    E++  +Y  +IDG C  G  +     L+ + ++G+ P 
Sbjct: 238 FCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPS 297

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +VTYN +INGLCK G   EAD++      KG   D+ +F+T++ G++
Sbjct: 298 IVTYNSIINGLCKAGRTSEADEV-----SKGIAGDAVTFSTLLHGYI 339



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D+  YS +I+ LC    L +A++L   +  +GI   +  YN +I+    +     A  L
Sbjct: 637 MDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRL 696

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +LE+     +   Y+ +ID LC+ G   +A++  +++  KG  P V  YN LI+G CK
Sbjct: 697 FDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCK 756

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G + EA  LL+ +K +   PD  + + +I G+  K + + A  F 
Sbjct: 757 FGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFF 802



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQ 99
           FV SS+I+G C  ++ + AV  F+  V   +    +     +     + GR   ++ L+ 
Sbjct: 88  FVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVS 147

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +ER+++  ++  YS  I G  R G   EA +K  ++ EKG+ P  V+Y ILI+G  ++G
Sbjct: 148 WMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREG 207

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            + +A   L +MK+ G  P+  ++  ++ GF  K + D A +  K
Sbjct: 208 YVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK 252



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 48/218 (22%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G C   +ID          K+GI   +  Y+S+INGLC   R  EA E     
Sbjct: 265 MYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE----- 319

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-------------- 112
           V++GI  + VT++ L+H   E++     +   + LE D   +++ +              
Sbjct: 320 VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGAL 379

Query: 113 ---------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                Y  +I+G CRV R EEA +  D+   K  +  V  Y  +
Sbjct: 380 EDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDEF-RKTSISSVSCYKCM 438

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           I GLC+KGM+  A ++ +++ EKG    S ++ ++I+ 
Sbjct: 439 IYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKA 476



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           GNF V    I+G CKI +   A+         + +  ++   ++L+  L    R++E  +
Sbjct: 86  GNF-VSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSD 144

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV------YSL 115
           L   M  +    ++V Y+  I       G F    L++ + + K  +   +      Y++
Sbjct: 145 LVSWMEREEFVFDVVFYSSWIC------GYFREGVLVEAIRKHKEMIEKGIAPDTVSYTI 198

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  R G  E+A   L+++ + GL P +VTY  ++ G CKKG + EA  L   ++  G
Sbjct: 199 LIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLG 258

Query: 176 CFPDSTSFNTVIQGFLVKNETD 197
              D   + T+I GF  + + D
Sbjct: 259 IEVDEFMYVTLIDGFCTRGDID 280



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 42/204 (20%)

Query: 43  YSSLINGLCTFNRLKEAVELF--DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           + SLI GLC   +  E   L   D +   GI     T++ LIH ++  QG+ S A+ +L+
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIH-SFTSQGKMSRAIEVLE 74

Query: 100 TLERDK--YELNIEVYSLVIDGLCRV---------------------------------- 123
            +  DK  Y     V S VI G C++                                  
Sbjct: 75  LMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 124 --GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             GR  E    +  +  +  V  VV Y+  I G  ++G+++EA +   +M EKG  PD+ 
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTV 194

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           S+  +I GF  +   ++A  FL+K
Sbjct: 195 SYTILIDGFSREGYVEKAIGFLEK 218



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 41/195 (21%)

Query: 15  YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           Y   ING C++  I+ A+      +K     V  Y  +I GLC    +  A+E+F ++  
Sbjct: 401 YCTMINGYCRVXRIEEALEIFDEFRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNE 460

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G+     TY  LI  ++E+QG   A  +L+ + R             I+ L        
Sbjct: 461 KGLELVSGTYTSLIKASFEEQG---AEGVLKFVHR-------------IENL-------- 496

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            R+  D +S           N  I  LCK+G  + A ++ ++M+ K     S S+ ++++
Sbjct: 497 GREAFDTIS-----------NSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILK 545

Query: 189 GFLVKNETDRASSFL 203
           G +  ++      FL
Sbjct: 546 GLISDDQKGLGWPFL 560



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-----KGICL--DVFVYSSLINGLCTFNRLKEAV 60
           F  N  VY   I+G CK   ++ A+      K  C+  D F  S+LING C    ++ A+
Sbjct: 740 FNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGAL 799

Query: 61  ELFDKMVAQGITAELVTYNPLIHD------NWEKQGRFSAM----ALLQTLERDKYELNI 110
             F +   + I  + + +  L+          E +G    M    ++L+ + R   E+  
Sbjct: 800 GFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVLELINRVDTEIET 859

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQL 136
           E     I  LC  G  +EA   L+++
Sbjct: 860 ESVESFIISLCEQGSIQEAVTVLNEV 885



 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+  L + GR  +A K +    E   V  +V Y+I+I+ LCK+G + +A  L   +K+KG
Sbjct: 610 VLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKG 669

Query: 176 CFPDSTSFNTVIQGF 190
              +  ++N+VI G 
Sbjct: 670 IALNIYAYNSVINGL 684


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 96/171 (56%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K G   +  VY++LING C   ++ +AV+++ +M   G    ++TYN LI    + +  
Sbjct: 2   MKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKY 61

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A +L + +    ++ +I  Y  +I GLCRV + + A    +++ + G+   V+ +NIL
Sbjct: 62  QEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNIL 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           I+GLC  G + +A  + ++MKEK C P+  ++NT++ GF      D A+S 
Sbjct: 122 IHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASL 172



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING C+  +I  A+K        G C  +  Y++LI+GLC   + +EA  
Sbjct: 7   KPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASS 66

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G   ++ TY  LI      +   +A+ +   +     ++++ V++++I GLC
Sbjct: 67  LTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLC 126

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             G+  +A     ++ EK   P +VTYN L++G  + G I  A  L   + + G  PD  
Sbjct: 127 SAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIV 186

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++NT I+G    N T      L +
Sbjct: 187 TYNTRIKGLCSCNRTPEGVLLLNE 210



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 7/167 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+ FK +   YG  I G+C++++ID+A+         GI +DV V++ LI+GLC+  
Sbjct: 70  EMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSAG 129

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++ +A  ++ +M  +  +  LVTYN L+   +E     +A +L   +  +  + +I  Y+
Sbjct: 130 KVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYN 189

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
             I GLC   R  E    L+++   G++P V+T++IL+  + + G I
Sbjct: 190 TRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAVIRYGPI 236



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + + G  P    YN LING C+   I +A K+ ++M   GC P   ++NT+I G     +
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 196 TDRASSFLKK 205
              ASS  K+
Sbjct: 61  YQEASSLTKE 70


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  +ID A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 194 DVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIY 253

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q ++ +L+TYN LI+   +K     A  L+  +     + +   Y+ +IDG C+ 
Sbjct: 254 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKD 313

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A +   ++ ++      V Y  LI+GLC++G  ++A+K+L +M   G  PD+ ++
Sbjct: 314 GDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTY 373

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +  + S  LK+
Sbjct: 374 TMIINEFCKKGDVWKGSKLLKE 395



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+   V  Y++L+NG     
Sbjct: 115 EILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 174

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 175 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFT 234

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L P ++TYN LI GLCKKG + +A  L+ +M  K
Sbjct: 235 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 294

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G     + D A    K+
Sbjct: 295 GLKPDKITYTTLIDGCCKDGDLDTAFEHRKR 325



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +             T   ++    + +         
Sbjct: 54  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 113

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV+YN L+NG  + 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G + E  +L   M   G  PD  +++ +I G   +++ D A+   
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELF 218



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITA-----------ELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A           +L  ++ LI  
Sbjct: 5   YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVFSGLITA 64

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V++ L ++  ++      +++ E G    
Sbjct: 65  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 124

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK G I  A  +   + + G  P   S+NT++ G++   + D  
Sbjct: 125 LYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 179


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 39/216 (18%)

Query: 11  NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N +   I IN  CK++ +D         IK G+  DV  +++LINGLC   +  +AVELF
Sbjct: 119 NTYTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELF 178

Query: 64  DKMVAQG----------------------------ITAELVTYNPLIHDNWEKQGRFS-A 94
           D+ V +G                            I  ++VT+N L+ D + K+G+ S A
Sbjct: 179 DETVERGYNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLV-DTFCKEGKVSEA 237

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             +L+T+     EL++  Y+ ++ G        EARK    +  KG  P V +YNILING
Sbjct: 238 QGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILING 297

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            CK  MI EA +L  +M  +G  P+  S+NT   GF
Sbjct: 298 YCKAEMIDEAKQLFNEMIHQGLTPNIVSYNT--HGF 331



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 21/163 (12%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           I KG   +VF Y+ LING C    + EA +LF++M+ QG+T  +V+YN   H   +    
Sbjct: 280 ITKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYN--THGFCQLGKL 337

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL--------------- 136
             A  L + +  +    ++  YS+++DG C+ G    ARK   +L               
Sbjct: 338 REAQELNENMHTNGNLPDLCTYSILLDGFCKQGNHIAARKLFSELFVQGLQRLLDEALET 397

Query: 137 ----SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
                E G  P   +YN++I G  +      A +L+ +M+++G
Sbjct: 398 FRKMEEDGCPPNEWSYNVIIRGFLRHRDESRAVQLIGEMRDRG 440



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 52  TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNI 110
           +F  + +A+  F+ M+ +     ++ +  L+    + +  + A ++L + +E      N 
Sbjct: 61  SFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNT 120

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              +++I+  C++   +     L ++ + GL P VV +  LINGLCK G   +A +L  +
Sbjct: 121 YTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDE 180

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             E+G       +N++I G    ++   AS+ L +
Sbjct: 181 TVERG-------YNSLIHGLCNCSQWKEASAILNE 208


>gi|297796623|ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312031|gb|EFH42455.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 821

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCK----IREIDS---AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK    ++ +D    A  KG+ L+   Y+SLINGLC    L EA+ LFD + 
Sbjct: 509 YTIIINGLCKEGFLVKALDLCNFAKSKGVTLNTITYNSLINGLCQQGCLVEALRLFDSLD 568

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G+    VTY  LI DN  K+G F  A  LL ++       NI +Y+ ++DG C++G+ 
Sbjct: 569 NIGLVPSEVTYGILI-DNLCKEGLFLDAEKLLDSMVSKGLVPNILIYNSIVDGYCKLGQT 627

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A + L +     + P   T + +I G CKKG + EA ++  + KE+    D   F  +
Sbjct: 628 EDAMRVLSRKMMGRVKPDAFTVSSIIKGYCKKGDMEEALRVFAEFKEENISADFLGFLFL 687

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+ F  K   + A   L++
Sbjct: 688 IKCFCTKGRMEEARGLLRE 706



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KGI  DV  YS LI+GL     +++A+ L  KM+ +GI   L+TY  +I    +K   
Sbjct: 120 VEKGINRDVVSYSILIDGLSREGNIEKALGLLGKMIKEGIEPNLITYTAIIRGLCKKGKL 179

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  L   +     E++  +Y  +IDG+C+ G    A   L  + ++G+ P ++TYN +
Sbjct: 180 EDAFVLFDRILSFGIEVDEFLYVTLIDGICKKGNLNRAFSMLGDMEQRGIQPSILTYNTV 239

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           INGLCK G + EAD +      KG   D  +++T++  ++
Sbjct: 240 INGLCKAGRVSEADDI-----SKGVVGDVITYSTLLDSYV 274



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 92/162 (56%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +DV  Y+ +INGLC    L +A++L +   ++G+T   +TYN LI+   ++     A+ L
Sbjct: 504 MDVIDYTIIINGLCKEGFLVKALDLCNFAKSKGVTLNTITYNSLINGLCQQGCLVEALRL 563

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +L+      +   Y ++ID LC+ G + +A K LD +  KGLVP ++ YN +++G CK
Sbjct: 564 FDSLDNIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNILIYNSIVDGYCK 623

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G   +A ++L +       PD+ + +++I+G+  K + + A
Sbjct: 624 LGQTEDAMRVLSRKMMGRVKPDAFTVSSIIKGYCKKGDMEEA 665



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++ +C++ ++D           +G   D   YS+ I+G      L +A+   
Sbjct: 57  NLVTYTAVVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 116

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            KMV +GI  ++V+Y+ LI D   ++G    A+ LL  + ++  E N+  Y+ +I GLC+
Sbjct: 117 RKMVEKGINRDVVSYSILI-DGLSREGNIEKALGLLGKMIKEGIEPNLITYTAIIRGLCK 175

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ E+A    D++   G+      Y  LI+G+CKKG +  A  +L  M+++G  P   +
Sbjct: 176 KGKLEDAFVLFDRILSFGIEVDEFLYVTLIDGICKKGNLNRAFSMLGDMEQRGIQPSILT 235

Query: 183 FNTVIQGF 190
           +NTVI G 
Sbjct: 236 YNTVINGL 243



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 3/189 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           D+ ++  + +   Y   ING+CK   +  A  I KG+  DV  YS+L++       +   
Sbjct: 223 DMEQRGIQPSILTYNTVINGLCKAGRVSEADDISKGVVGDVITYSTLLDSYVKVENIDAV 282

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +E+  + V   I  +LV  N L+           A AL + +       +   Y+ +I+G
Sbjct: 283 LEIRRRFVEAKIPMDLVMCNILLKAFLLVGAYGEADALYRAMPEMGLTPDTATYATMIEG 342

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+ G+ E+A +  ++L  K  V   V YN +I+ LCKKGM+  A ++L+++ EKG + D
Sbjct: 343 YCKTGQIEDALEMFNEL-RKSSVSAAVCYNHIIDALCKKGMLETAMEVLIELWEKGLYLD 401

Query: 180 STSFNTVIQ 188
             +  T++ 
Sbjct: 402 IHTSRTLLH 410



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+CK   ++ A        ++GI   +  Y+++INGLC   R+ EA +     
Sbjct: 200 LYVTLIDGICKKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCKAGRVSEADD----- 254

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +++G+  +++TY+ L+    + +   + + + +     K  +++ + ++++     VG +
Sbjct: 255 ISKGVVGDVITYSTLLDSYVKVENIDAVLEIRRRFVEAKIPMDLVMCNILLKAFLLVGAY 314

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA      + E GL P   TY  +I G CK G I +A ++  +++ K     +  +N +
Sbjct: 315 GEADALYRAMPEMGLTPDTATYATMIEGYCKTGQIEDALEMFNELR-KSSVSAAVCYNHI 373

Query: 187 IQGFLVKNETDRASSFL 203
           I     K   + A   L
Sbjct: 374 IDALCKKGMLETAMEVL 390



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 108/315 (34%), Gaps = 110/315 (34%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRL 56
           + E     +   Y   I G CK  +I+ A+      +K        Y+ +I+ LC    L
Sbjct: 324 MPEMGLTPDTATYATMIEGYCKTGQIEDALEMFNELRKSSVSAAVCYNHIIDALCKKGML 383

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-------------- 102
           + A+E+  ++  +G+  ++ T   L+H      G    + L+  +E              
Sbjct: 384 ETAMEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILDLVYKVEQLNSDICLGMLNDA 443

Query: 103 ------RDKYELNIEVY------------------------------------------- 113
                 R  +E  IEVY                                           
Sbjct: 444 ILLLCNRGSFEAAIEVYMIMMRKDLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTLSS 503

Query: 114 ------SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING------------- 154
                 +++I+GLC+ G   +A    +    KG+    +TYN LING             
Sbjct: 504 MDVIDYTIIINGLCKEGFLVKALDLCNFAKSKGVTLNTITYNSLINGLCQQGCLVEALRL 563

Query: 155 ----------------------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
                                 LCK+G+ ++A+KLL  M  KG  P+   +N+++ G+  
Sbjct: 564 FDSLDNIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNILIYNSIVDGYCK 623

Query: 193 KNETDRASSFLKKNM 207
             +T+ A   L + M
Sbjct: 624 LGQTEDAMRVLSRKM 638



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 34/167 (20%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D FV S++I+G C   + + A+  F+  V  G+                           
Sbjct: 21  DNFVSSAVISGFCKIGKPELALGFFETAVDSGVLVP------------------------ 56

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                     N+  Y+ V+  LC++G+ +E R  + +L ++G     V Y+  I+G  K 
Sbjct: 57  ----------NLVTYTAVVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKG 106

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G +++A     +M EKG   D  S++ +I G   +   ++A   L K
Sbjct: 107 GALVDALMQDRKMVEKGINRDVVSYSILIDGLSREGNIEKALGLLGK 153



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 93  SAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYN 149
           +A+ +L+ +   K  Y  +  V S VI G C++G+ E A    +   + G LVP +VTY 
Sbjct: 3   NAIEVLEMMTNKKVNYPFDNFVSSAVISGFCKIGKPELALGFFETAVDSGVLVPNLVTYT 62

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            +++ LC+ G + E   L+ +++++G   D   ++  I G+
Sbjct: 63  AVVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGY 103



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 33/215 (15%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   ++G CK+ + + A++         +  D F  SS+I G C    ++EA+ +F
Sbjct: 610 NILIYNSIVDGYCKLGQTEDAMRVLSRKMMGRVKPDAFTVSSIIKGYCKKGDMEEALRVF 669

Query: 64  DKMVAQGITAELVTYNPLIH------DNWEKQGRFSAMALLQTLERDKYELNIE-VYSLV 116
            +   + I+A+ + +  LI          E +G    M + +++ +    ++ E V S  
Sbjct: 670 AEFKEENISADFLGFLFLIKCFCTKGRMEEARGLLREMLVSESVVKLINRVDAELVESES 729

Query: 117 IDG----LCRVGRWEEARKKLDQLSE----KGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           I G    LC  GR  +A K LD++S      G  PG       +NG+ +K          
Sbjct: 730 IRGFLVELCEQGRVPQAIKILDEISSTIYLSGKNPGSYQRLQFLNGVNEK---------- 779

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++K++    D  S ++ I       + ++A+ F+
Sbjct: 780 -EIKKEDYVHDFHSLHSTISSLCTSGKLEQANEFV 813


>gi|8777358|dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
          Length = 1012

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I ING+CK       +     A  +G+ L+   Y+SLINGLC    L EA+ LFD + 
Sbjct: 699 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 758

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G+    VTY  LI DN  K+G F  A  LL ++       NI +Y+ ++DG C++G+ 
Sbjct: 759 NIGLVPSEVTYGILI-DNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQT 817

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A + + +     + P   T + +I G CKKG + EA  +  + K+K    D   F  +
Sbjct: 818 EDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFL 877

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+GF  K   + A   L++
Sbjct: 878 IKGFCTKGRMEEARGLLRE 896



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 91/164 (55%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +DV  Y+ +INGLC    L +A+ L     ++G+T   +TYN LI+   ++     A+ L
Sbjct: 694 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRL 753

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +LE      +   Y ++ID LC+ G + +A K LD +  KGLVP ++ YN +++G CK
Sbjct: 754 FDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCK 813

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            G   +A +++ +       PD+ + +++I+G+  K + + A S
Sbjct: 814 LGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALS 857



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ++ +C++ ++D           +G   D   YS+ I+G      L +A+   
Sbjct: 247 NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 306

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +MV +G+  ++V+Y+ LI D   K+G    A+ LL  + ++  E N+  Y+ +I GLC+
Sbjct: 307 REMVEKGMNRDVVSYSILI-DGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCK 365

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G+ EEA    +++   G+      Y  LI+G+C+KG +  A  +L  M+++G  P   +
Sbjct: 366 MGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILT 425

Query: 183 FNTVIQGFLVKNETDRA 199
           +NTVI G  +      A
Sbjct: 426 YNTVINGLCMAGRVSEA 442



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 3/189 (1%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGICLDVFVYSSLINGLCTFNRLKEA 59
           D+ ++  + +   Y   ING+C    +  A  + KG+  DV  YS+L++       +   
Sbjct: 413 DMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAV 472

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
           +E+  + +   I  +LV  N L+           A AL + +       +   Y+ +I G
Sbjct: 473 LEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKG 532

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C+ G+ EEA +  ++L  K  V   V YN +I+ LCKKGM+  A ++L+++ EKG + D
Sbjct: 533 YCKTGQIEEALEMFNEL-RKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 591

Query: 180 STSFNTVIQ 188
             +  T++ 
Sbjct: 592 IHTSRTLLH 600



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G+C+   ++ A        ++GI   +  Y+++INGLC   R+ EA E     
Sbjct: 390 LYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADE----- 444

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G+  +++TY+ L+    + Q   + + + +     K  +++ + ++++     +G +
Sbjct: 445 VSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAY 504

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA      + E  L P   TY  +I G CK G I EA ++  +++ K     +  +N +
Sbjct: 505 GEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR-KSSVSAAVCYNRI 563

Query: 187 IQGFLVKNETDRASSFL 203
           I     K   D A+  L
Sbjct: 564 IDALCKKGMLDTATEVL 580



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 40/228 (17%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRL 56
           + E     +   Y   I G CK  +I+ A+      +K        Y+ +I+ LC    L
Sbjct: 514 MPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYNRIIDALCKKGML 573

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
             A E+  ++  +G+  ++ T   L+H      G    + L+  LE+   ++ + + +  
Sbjct: 574 DTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDA 633

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLV---PG----------------------------- 144
           I  LC+ G +E A +    +  KGL    P                              
Sbjct: 634 ILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTLSS 693

Query: 145 --VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             V+ Y I+INGLCK+G +++A  L    K +G   ++ ++N++I G 
Sbjct: 694 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGL 741



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 15  YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YGI I+ +CK        + +DS + KG+  ++ +Y+S+++G C   + ++A+ +  + +
Sbjct: 769 YGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKM 828

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +T +  T + +I    +K     A+++    +      +   +  +I G C  GR E
Sbjct: 829 MGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRME 888

Query: 128 EARKKLDQL 136
           EAR  L ++
Sbjct: 889 EARGLLREM 897



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDG 119
           L D +   G     +T+  LI+   EK    +A+ +L+ +      Y  +  V S VI G
Sbjct: 162 LRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISG 221

Query: 120 LCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            C++G+ E A    +   + G LVP +VTY  L++ LC+ G + E   L+ +++++G   
Sbjct: 222 FCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEF 281

Query: 179 DSTSFNTVIQGFL 191
           D   ++  I G+ 
Sbjct: 282 DCVFYSNWIHGYF 294



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 69/188 (36%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
            D FV S++I+G C   + + A+  F+  V  G+                          
Sbjct: 210 FDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVP----------------------- 246

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR---KKLD-------------------- 134
                      N+  Y+ ++  LC++G+ +E R   ++L+                    
Sbjct: 247 -----------NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFK 295

Query: 135 ------------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
                       ++ EKG+   VV+Y+ILI+GL K+G + EA  LL +M ++G  P+  +
Sbjct: 296 GGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLIT 355

Query: 183 FNTVIQGF 190
           +  +I+G 
Sbjct: 356 YTAIIRGL 363



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
           + R    +     ++  G +  L + +  +   +  Q     +     L+  +  +N  +
Sbjct: 45  YPRTSSGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRI 104

Query: 113 YSLVIDGLCRVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLC------KKGMIMEAD 165
           YS+V      + R+E+A K ++  +S+  + P     + LI+G         KG+++  D
Sbjct: 105 YSIVSWAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRD 164

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            L    +  G FP S +F ++I  F+ K E D A   L+
Sbjct: 165 CL----RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLE 199



 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 18/145 (12%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   ++G CK+ + + A++         +  D F  SS+I G C    ++EA+ +F
Sbjct: 800 NIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVF 859

Query: 64  DKMVAQGITAELVTYNPLIHD------NWEKQGRFSAMALLQTLERDKYELNIEVY-SLV 116
            +   + I+A+   +  LI          E +G    M + +++ +    ++ E+  S  
Sbjct: 860 TEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESES 919

Query: 117 IDG----LCRVGRWEEARKKLDQLS 137
           I G    LC  GR  +A K LD++S
Sbjct: 920 IRGFLVELCEQGRVPQAIKILDEIS 944


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 8/190 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N H+Y   I+G C++     A++        G    V  Y++LI+GLC   + +EA  
Sbjct: 471 KPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASS 530

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +  +MV  G T ++ TY  LI   +  +    A+++ + +     ++++ +++++I GLC
Sbjct: 531 VAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590

Query: 122 RVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
             G+ +EA      + E K   P +VTYN L++GL + G I +A  L   + E G  PD 
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650

Query: 181 TSFNTVIQGF 190
            S+NT I+G 
Sbjct: 651 ISYNTRIKGL 660



 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 10/206 (4%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N   Y I +  +C   ++D A+       ++ +  D   YS+L+ GL   +RL  
Sbjct: 152 RRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDH 211

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVYSLV 116
           A++L D+M    +  ++V YN L+   + K G F   M +   L +D     N+  Y+++
Sbjct: 212 ALDLLDEMPRSRVQPDVVCYNALLGGCF-KAGEFEKVMRVWDKLVKDPGARPNLATYNVM 270

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           +DGLC+ GR++E  +  +++    L P V+TY ILI+GLC+ G +  A ++  ++ + G 
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSF 202
             D+  +N++++GF        A  F
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKF 356



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 42/199 (21%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            +G  I+G+C+           + A   G  LDVF YSS+INGLC   RL +AV++++KM
Sbjct: 406 TFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM 465

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                                              ++D  + N  +Y+ +I G C+V R 
Sbjct: 466 -----------------------------------DKDGCKPNSHIYNALISGFCQVYRT 490

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A +   ++++ G  P V+TYN LI+GLCK     EA  +  +M E G  PD T++ ++
Sbjct: 491 SDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSL 550

Query: 187 IQGFLVKNETDRASSFLKK 205
           I+G     + D A S  K+
Sbjct: 551 IRGLFSDKKIDDALSIWKQ 569



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 42/234 (17%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK- 65
            YGI I+G+C+  ++D A       IK G+ +D  +Y+SL+ G C   R++EA + +D  
Sbjct: 301 TYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSA 360

Query: 66  ----------------------MVAQGI------------TAELVTYNPLIHDNWEKQGR 91
                                 MV + I              + VT+  LIH   +    
Sbjct: 361 GFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFA 420

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A  + +       +L++  YS +I+GLC VGR  +A K  +++ + G  P    YN L
Sbjct: 421 NKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNAL 480

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+G C+     +A ++  +M + GC P   ++NT+I G     +   ASS  ++
Sbjct: 481 ISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVARE 534



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E  F  +   YG  I G+   ++ID A+        KG+ +DV +++ LI+GLC+  
Sbjct: 534 EMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAG 593

Query: 55  RLKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
           ++ EA+ +F  M   +     LVTYN L+   +E      A  L  ++  D  E +I  Y
Sbjct: 594 KVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISY 653

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           +  I GLC   R  E  + LD++  +G++P V+T+NIL+  + K G I
Sbjct: 654 NTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           A  + I  ++  Y+ ++  LC    L  AV LFD +  + +  + +TY+ L+     KQ 
Sbjct: 149 AFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMC-GLAKQD 207

Query: 91  RFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTY 148
           R   A+ LL  + R + + ++  Y+ ++ G  + G +E+  +  D+L  + G  P + TY
Sbjct: 208 RLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           N++++GLCK G   E  ++  +M      PD  ++  +I G     + D A+
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGLVPGVVTYNILINGLCKKGMIMEAD 165
           I  ++ ++D   R  R+ +A      LS     + + P + TYNI++  LC +G +  A 
Sbjct: 119 IRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAV 178

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L   ++ +   PD  +++T++ G   ++  D A   L +
Sbjct: 179 TLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDE 218


>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK   +D A       +  G+  +   +++LI+G C   RL  A++++
Sbjct: 205 DVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIY 264

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ QG + ++VTYN LI+   +K     A  LL  + R   + +   Y+ +IDG C+ 
Sbjct: 265 RQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKE 324

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A +  +++ ++ +    V Y  LI GLC++G  ++A+K+L +M   G  PD  ++
Sbjct: 325 GDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETY 384

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             ++  F  K +  +AS  L++
Sbjct: 385 TMIMNEFCKKGDVKKASELLRE 406



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 91/167 (54%), Gaps = 7/167 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A       + +G   DV  Y++LI GLC    LK+A  L D+M  +G+
Sbjct: 248 IDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGL 307

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + +TY  LI  + ++    +A  L + + ++   L+  VY+ +I GLC+ GR  +A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEK 367

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L ++   GL P   TY +++N  CKKG + +A +LL +M+  G  P
Sbjct: 368 MLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  E+       D+  K G+   V  +++L+NG     
Sbjct: 126 EILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLG 185

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L + M A G+  ++ TY+ LI+   ++     A  L   +  +    N   ++
Sbjct: 186 DLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFT 245

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A     Q+  +G  P VVTYN LI GLCKKG + +A  LL +M  K
Sbjct: 246 TLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRK 305

Query: 175 GCFPDSTSFNTVIQG 189
           G  PD  ++ T+I G
Sbjct: 306 GLKPDKITYTTLIDG 320



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
            + +++  G  A L  +N L+H  + K+G    A ++   + +     ++  ++ +++G 
Sbjct: 123 FYKEILECGYPASLYFFNILMH-RFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            ++G  +E  +  + +   G+ P V TY++LINGLCK+  + EA+ L  +M + G  P+ 
Sbjct: 182 IKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNG 241

Query: 181 TSFNTVIQGFLVKNETDRA 199
            +F T+I G       D A
Sbjct: 242 VTFTTLIDGHCKNGRLDLA 260


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           ++E+ F  +   Y I I+G CKI E+  A       I      +V  Y++ +NGL    R
Sbjct: 473 VSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGR 532

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + +A  ++++MVA G + +++TY+ LIH     +    A  L +T+       N   Y+ 
Sbjct: 533 IADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNC 592

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC+  + +EA +   ++ E+G  P  VTY  L+ G C  G I +A ++  +M  KG
Sbjct: 593 LLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 652

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             PD  ++N +++GF    +   A    +
Sbjct: 653 HDPDVVAYNCLLKGFFRAGKPGEAKQLFQ 681



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   +NG+ +   I  A       +  G   DV  YS+LI+G     +  +A ELF
Sbjct: 516 NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M+++G     VTYN L+H   ++     A  L + +     + +   Y+ ++ G C V
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNV 635

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ E+A +  D++  KG  P VV YN L+ G  + G   EA +L   M  + C PD+ S 
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH 695

Query: 184 NTVIQGFLVKNETDRA 199
           N +I G       D A
Sbjct: 696 NIMIDGLSKAKRLDDA 711



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 10/185 (5%)

Query: 15  YGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           Y   +N +CK +++  A         ++    DV  YS LI+G C  + L  A +L+ +M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +       + TYN  + +   ++GR + A  + + +       ++  YS +I G     +
Sbjct: 509 IDLNCVPNVTTYNAFL-NGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARK 567

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A +  + +  +G  P  VTYN L++GLCK+    EA +L  +M E+GC PD  ++ T
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 186 VIQGF 190
           ++ GF
Sbjct: 628 LLYGF 632



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   ++G+CK  + D A       +++G   D   Y++L+ G C   ++++AVE
Sbjct: 584 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVE 643

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +FD+MV++G   ++V YN L+   +       A  L Q +   + + +   ++++IDGL 
Sbjct: 644 VFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLS 703

Query: 122 RVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           +  R ++A +  +++ +  G  P +VTYN LI GLC +  + EA K+  ++      PD 
Sbjct: 704 KAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDP 763

Query: 181 TSFNTVIQG 189
            +FN +++ 
Sbjct: 764 HAFNVLLEA 772



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G    R+ D A       I +G   +   Y+ L++GLC  ++  EA ELF KM
Sbjct: 554 TYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V +G   + VTY  L++          A+ +   +    ++ ++  Y+ ++ G  R G+ 
Sbjct: 614 VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 673

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNT 185
            EA++    +  +   P  V++NI+I+GL K   + +A ++  +M ++ GC PD  ++N+
Sbjct: 674 GEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNS 733

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G   +     A    K+
Sbjct: 734 LIFGLCGEQRLSEAMKVFKE 753



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 45/232 (19%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-- 69
           I  +CK   +DSA       IK+G C D+  +S LIN LC  ++++EA E    M  +  
Sbjct: 381 IQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKIS 440

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRV----- 123
             ++   +YN L++   + +    A A+  T+  ++ +  ++  YS++IDG C++     
Sbjct: 441 SRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGR 500

Query: 124 ------------------------------GRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
                                         GR  +A+   +++   G  P V+TY+ LI+
Sbjct: 501 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIH 560

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G        +A +L   M  +GC P++ ++N ++ G   +++ D A    +K
Sbjct: 561 GFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 612



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAV 60
           K +  +Y   +   CK+  +D A K            L+   +++ ++GLC   ++++A 
Sbjct: 266 KPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAF 325

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVID 118
           E    M  + +++    Y+ LI    E  GR   +  A L+   R+    +   +S VI 
Sbjct: 326 EACRTM-QESLSSSQPVYDMLIRLLIE-SGRIDKAEEACLEIAGRNIQPSSGTCHS-VIQ 382

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            LC+ GR + A   L+ + ++G  P + T+++LIN LCK   I EA + L  M  K
Sbjct: 383 ELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DVF Y+ L++ L     LK+A ++F+KMVAQG+     TY  L+  +  ++    A+   
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFF 187

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +    ++ +  +Y  V + L   G+  E  +   +  EK +   ++    L+     +
Sbjct: 188 GEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQ 247

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
              +EA KL   M + GC PD+T ++ ++
Sbjct: 248 DKAIEASKLFRAMVKSGCKPDATIYSYMV 276



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE---- 87
           +K G   D  +YS ++   C    L EA +LF +M  +       +  PL +  W     
Sbjct: 261 VKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVE-------SKAPLNNVAWTAFLS 313

Query: 88  ---KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
              K G+   A    +T++ +    +  VY ++I  L   GR ++A +   +++ + + P
Sbjct: 314 GLCKSGKIEQAFEACRTMQ-ESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQP 372

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              T + +I  LCK G +  A  LL  M ++G  PD  + + +I      ++   A  FL
Sbjct: 373 SSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFL 432

Query: 204 K 204
           +
Sbjct: 433 Q 433



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + L+   ++ ++  Y+ ++D L R    ++A +  +++  +G+VP   TY +L+ 
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQ 172

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
             C +    EA +   +M +KG  P ST +  V +
Sbjct: 173 SSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTE 207



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 43/214 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           L  + FK +   Y   ++ + + R++  A       + +G+  + F Y+ L+   C    
Sbjct: 120 LQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERN 179

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH--DNWEKQGRFS-------------------- 93
             EAV  F +MV +G       Y  +        K+G FS                    
Sbjct: 180 SDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKA 239

Query: 94  -------------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
                        A  L + + +   + +  +YS ++   C++   +EA K   +++ + 
Sbjct: 240 LLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVES 299

Query: 141 LVP-GVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             P   V +   ++GLCK G I +A +    M+E
Sbjct: 300 KAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE 333


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 111/204 (54%), Gaps = 7/204 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + Y + ING+CK  +ID A       + KG+  +   +++LI+G C   R+  A+E
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 268

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           ++ +M++Q ++ +L+TYN LI+   +K     A  L+  +     + +   Y+ +IDG C
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCC 328

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  + A +   ++ ++      V Y  LI+GLC++G  ++A+K+L +M   G  PD+ 
Sbjct: 329 KDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDAR 388

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           ++  +I  F  K +  + S  LK+
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKE 412



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+   V  Y++L+NG     
Sbjct: 132 EILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 191

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 192 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFT 251

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L P ++TYN LI GLCKKG + +A  L+ +M  K
Sbjct: 252 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMK 311

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G     + D A    K+
Sbjct: 312 GLKPDKITYTTLIDGCCKDGDLDTAFEHRKR 342



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 73/162 (45%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +             T   ++    + +         
Sbjct: 71  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV+YN L+NG  + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           G + E  +L   M   G  PD  +++ +I G   +++ D A+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDAN 232



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITA-----------ELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A           +L  ++ LI  
Sbjct: 22  YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVFSGLITA 81

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V++ L ++  ++      +++ E G    
Sbjct: 82  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 141

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK G I  A  +   + + G  P   S+NT++ G++   + D  
Sbjct: 142 LYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196


>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMALFKR 184



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMALFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AMAL + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMALFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C    ID A       ++KG+   V  Y+++++GL    R  EA EL+  M
Sbjct: 486 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 545

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G   ++ TYN +++   +      A  + Q+L     +LNI  ++++I  L + GR 
Sbjct: 546 INSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 605

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E+A      +   GLVP VVTY ++   L ++G + E D L   M++ G  P+S   N +
Sbjct: 606 EDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 665

Query: 187 IQGFLVKNETDRASSFLKK 205
           ++  L + +  RA ++L K
Sbjct: 666 VRRLLHRGDISRAGAYLSK 684



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 6/202 (2%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKE 58
           ++ +  K + + YG  +N +C + E    +D  ++ G+  D  +++   +       + +
Sbjct: 268 MSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDK 327

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A+++F+KM   G++  +V Y  LI D   K GR   A      +  +    NI V++ ++
Sbjct: 328 AMDIFNKMRQHGLSPNVVNYGALI-DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 386

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            GLC V +WE A + + ++ ++G+ P  V +N LI  LC  G +ME  +L+  M+  G  
Sbjct: 387 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR 446

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           PD+ S+  +I G+ +   TD A
Sbjct: 447 PDAFSYTPLISGYCLAGRTDEA 468



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 17/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E     + H++ I  +   K   ID A+       + G+  +V  Y +LI+ LC   R
Sbjct: 300 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 359

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMALLQTLERDKYELNI 110
           + +A   F++M+ +G+T  +V +N L++     D WE+     A  L+  +       N 
Sbjct: 360 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER-----AEELVYEMLDQGICPNA 414

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             ++ +I  LC VGR  E R+ +D +   G+ P   +Y  LI+G C  G   EA+K+   
Sbjct: 415 VFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDG 474

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M   G  P   ++NT++ G+   +  D A    ++
Sbjct: 475 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 509



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTF 53
           +++ +Q    N   +   I  +C +       R ID     G+  D F Y+ LI+G C  
Sbjct: 403 YEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLA 462

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R  EA ++FD MV+ G++   VTYN L+H          A  L + + R      +  Y
Sbjct: 463 GRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 522

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++ GL +  R+ EA++    +   G    + TYNI++NGLCK   + EA K+   +  
Sbjct: 523 NTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 582

Query: 174 KGCFPDSTSFNTVIQGFLVK 193
           KG   +  +F T++ G L+K
Sbjct: 583 KGLQLNIITF-TIMIGALLK 601



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+CK +  D A       I  G+  +   Y+ LI+G  +  + KE V++ 
Sbjct: 206 NVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQML 265

Query: 64  DKMVAQGITAELVTYNPLIHD--NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           +KM A+G+  +  TY  L++      +   F  + +   L  D +     ++++      
Sbjct: 266 EKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHH-----IFNIFFSAYA 320

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  ++A    +++ + GL P VV Y  LI+ LCK G + +A+    QM  +G  P+  
Sbjct: 321 KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 380

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
            FN+++ G    ++ +RA   +
Sbjct: 381 VFNSLVYGLCTVDKWERAEELV 402



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 29/225 (12%)

Query: 7   RFKGNFHVYGI------RIN---------GMCKIREIDSAI--------KKGICLDVFVY 43
           R K +F  +G+      R+N         G+C  + +  A+        + G   D   Y
Sbjct: 113 RLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSY 172

Query: 44  SSLINGLCTFNRLKEAVELFDKMV---AQGITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           S L+ G C  NR +EA+EL   M     +     +VTY  +I    + Q    A  + Q 
Sbjct: 173 SILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQ 232

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           +  +  + N + Y+ +I G   +G+W+E  + L+++S +GL P   TY  L+N LC    
Sbjct: 233 MIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA--- 289

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           + E    L  M E G  PD   FN     +      D+A     K
Sbjct: 290 LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNK 334



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE-L 62
           N   Y I I  +C++  +  +       +K G  ++  V + L+ GLC   R+ EA++ L
Sbjct: 97  NTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVL 156

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDG 119
             +M   G T + V+Y+ L+     +     A+ LL+ +  D       N+  Y+ VIDG
Sbjct: 157 LQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDG 216

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC+   ++ A     Q+ + G+ P   TYN LI+G    G   E  ++L +M  +G  PD
Sbjct: 217 LCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPD 276

Query: 180 STSFNTVIQ 188
             ++ +++ 
Sbjct: 277 CYTYGSLLN 285



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE    +    C     YS LI  LC   RLK +   F  ++  G     +  N L+  
Sbjct: 87  VRECSIKVAPNTC----TYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKG 142

Query: 85  NWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE---KG 140
             + +    AM  LLQ +       +   YS+++ G C   R EEA + L  ++    + 
Sbjct: 143 LCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRS 202

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             P VVTY  +I+GLCK  +   A+ +  QM + G  P++ ++N +I G+L
Sbjct: 203 CPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYL 253



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K + + Y I +NG+CK   +D A K       KG+ L++  ++ +I  L    R ++A++
Sbjct: 551 KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMD 610

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGL 120
           LF  + A G+   +VTY  L+ +N  ++G      +L   +E++    N ++ + ++  L
Sbjct: 611 LFAAIPANGLVPNVVTYR-LVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 669

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              G    A   L +L E+       T ++LI+
Sbjct: 670 LHRGDISRAGAYLSKLDERNFSVEASTTSLLIS 702


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 19  INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +N  C+       +R  +S   KG   +V+ Y++++ G C   ++ +A+ L D+M   G+
Sbjct: 307 VNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGV 366

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++VTYN LI          SA  LL+ +E +    +   Y+++ID LC+ G+ +EA  
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACS 426

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D L  +G+ P  VT+N +INGLCK G    A   L +M   GC PD+ +++  I+   
Sbjct: 427 LFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLC 486

Query: 192 VKNETDRASSFLKK 205
               +    SF+ +
Sbjct: 487 KTKGSREGLSFIDE 500



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 7/200 (3%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y + I+ +CK  ++D A         +GI  +   ++++INGLC   +   A    +K
Sbjct: 406 YTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEK 465

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV+ G   +  TY+P I +  + +G    ++ +  + +   + +   Y++VID L +   
Sbjct: 466 MVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERN 525

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +  A +   Q+   G  P VVTY   +   C +G + EA+ ++++MK+ G   D+ ++NT
Sbjct: 526 YGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNT 585

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G     +TD A + LK 
Sbjct: 586 LIDGHTSIGKTDHAVTILKH 605



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++++N  C   R+  AV +F+ M  +G    + TYN ++         + AMALL  +  
Sbjct: 304 TAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRE 363

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
              E ++  Y+L+I G C  G  E A + L  +   GL     TYN+LI+ LCK G + E
Sbjct: 364 CGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDE 423

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           A  L   ++ +G  P+S +FNTVI G     + D A +FL+K
Sbjct: 424 ACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEK 465



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G C+ +++D A         +G   D   Y++LI G C   R+ EA+ELF ++     
Sbjct: 171 ILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE---- 226

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++ T+  L+    + +     + +LQ ++   +      Y+ ++D  CR  + EEA K
Sbjct: 227 QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEK 286

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+++ + GLVP  VT   ++N  C++G +  A ++   MK KGC P+  ++N ++QGF 
Sbjct: 287 MLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFC 346

Query: 192 VKNETDRASSFLKK 205
              +  +A + L +
Sbjct: 347 NVGKVYKAMALLDQ 360



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + + + +   + G+C  R  +  +       + G       Y++L++  C   + +EA +
Sbjct: 227 QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEK 286

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           + ++M   G+    VT   ++ + + ++GR S A+ + ++++    E N+  Y+ ++ G 
Sbjct: 287 MLNEMFDNGLVPCAVTCTAVV-NAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGF 345

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C VG+  +A   LDQ+ E G+ P VVTYN+LI G C  G I  A +LL  M+  G   D 
Sbjct: 346 CNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQ 405

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
            ++N +I       + D A S  
Sbjct: 406 YTYNVLIDALCKTGKVDEACSLF 428



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 4/164 (2%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
            Y++LI  LC    L+ A      MV  G   +  T+N LI      Q    A  L   +
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKM 190

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
               +  +   Y+ +I+G C  GR +EA +   +L +    P + T+  L+ GLC     
Sbjct: 191 PLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLCDARRG 246

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            E   +L +MKE G  P + ++  ++  +  + + + A   L +
Sbjct: 247 EEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNE 290



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 16/188 (8%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY-------------- 78
           K GI +D   Y++LI+G  +  +   AV +   M          T+              
Sbjct: 573 KGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAE 632

Query: 79  -NPLIHDN-WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
             PL   + W+         L + ++++    +   Y  +++G     R +E    +  +
Sbjct: 633 DVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHM 692

Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
            E  L      Y  L+N  CK  M  +A  LL  M   G  P+  S+  ++ GF  + + 
Sbjct: 693 KEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQA 752

Query: 197 DRASSFLK 204
           DRA    +
Sbjct: 753 DRAKEIFR 760



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL-VTYNPLIHDNWEKQGRFSAMALLQT 100
            + SL+     +      + LF  M   G  A    TYN LI     +     A   L  
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           + R  +  +   ++ +I G CR  + + A+   D++  +G     V+Y  LI G C+ G 
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + EA +L  ++++    PD  +   +++G 
Sbjct: 215 VDEALELFRELEQ----PDMYTHAALVKGL 240



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 65/142 (45%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +  ELF+ M    + +    Y  ++    E++      +L+  ++ D   LN ++Y+ 
Sbjct: 647 LADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTS 706

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +++  C++  + +A   L  +   G +P +++Y  L++G   +G    A ++   ++ K 
Sbjct: 707 LVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKE 766

Query: 176 CFPDSTSFNTVIQGFLVKNETD 197
              D   +  +I G + +   D
Sbjct: 767 YNTDEIVWKIIIDGLIRQGHPD 788



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 70/226 (30%), Gaps = 78/226 (34%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           FD  E R  + N   +   ING+CK  + D A       +  G   D + YS  I  LC 
Sbjct: 428 FDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCK 487

Query: 53  FNRLKEAVELFD-----------------------------------KMVAQGITAELVT 77
               +E +   D                                   +MV+ G + ++VT
Sbjct: 488 TKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVT 547

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                                              Y+  +   C  GR  EA   + ++ 
Sbjct: 548 -----------------------------------YTTSVRAYCNEGRLHEAENVVMEMK 572

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           + G++   + YN LI+G    G    A  +L  M      P+  +F
Sbjct: 573 KGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTF 618


>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 184



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 14   VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y I I+G+CK   +  A       +  G+  D   Y+ LI+  C    L+EA ++F+ M
Sbjct: 1402 TYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNM 1461

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            ++ G+    VT+  +IH    +   +SA    + +  +  E N   Y+++I  LCR+GR 
Sbjct: 1462 ISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRT 1521

Query: 127  EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            + A     ++ E+GLV    TY +LI+G CK G   +A +   +M + G  PD  +   +
Sbjct: 1522 QLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKAL 1581

Query: 187  IQGF 190
            ++GF
Sbjct: 1582 LKGF 1585



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)

Query: 14   VYGIRINGMCKIREIDSAIK--KGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMV 67
             Y + I G+ +  +++ A +  +G+ L      F Y+ LI GL     +K+  +L  +M 
Sbjct: 1158 TYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEME 1217

Query: 68   AQGITAELVTYNPLIHDNWEK------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
             +GI   +VTYN +IH   +       Q +F+ M  +  L       ++  Y+ +++G C
Sbjct: 1218 NEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLP------DVITYNSLLNGYC 1271

Query: 122  RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            + G  +EA      L   GL P V+TYNILI+G C+ G + EA  L  +M E+GC P+  
Sbjct: 1272 KAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVC 1331

Query: 182  SFNTVIQGFL 191
            ++  +++G L
Sbjct: 1332 TYTILMKGSL 1341



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 86/166 (51%)

Query: 34   KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            +GI   V  Y+++I+GL     ++ A   F +M A G+  +++TYN L++   +      
Sbjct: 1219 EGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKE 1278

Query: 94   AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            A+ L   L R      +  Y+++IDG CR+G  EEAR   +++ E+G +P V TY IL+ 
Sbjct: 1279 ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMK 1338

Query: 154  GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G      +  A +   +M  KG  PD  ++NT I   L+  +  RA
Sbjct: 1339 GSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARA 1384



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%)

Query: 34   KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
            +GI  D   Y+ LI+GLC    LK+A EL  KMV+ G+  + +TY  LIH + E+     
Sbjct: 1394 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 1453

Query: 94   AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
            A  +   +  D    +   ++++I   CR G    A     ++ E+G+ P  +TYN+LI+
Sbjct: 1454 ARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIH 1513

Query: 154  GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
             LC+ G    A     +M E+G   +  ++  +I G
Sbjct: 1514 ALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDG 1549



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 7/211 (3%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
            DL           Y I I+G C++ +++ A        ++G   +V  Y+ L+ G     
Sbjct: 1285 DLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVR 1344

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             L  A E FD+M+++G+  +   YN  I           A  L + L  +    +   Y+
Sbjct: 1345 SLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYN 1404

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++I GLC+ G  ++A++   ++   GL P  +TY  LI+  C++G++ EA K+   M   
Sbjct: 1405 ILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 1464

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P + +F  +I  +  +     A  + +K
Sbjct: 1465 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRK 1495



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 2    DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
            ++ EQ    N   Y I + G   +R +       D  + KG+  D F Y++ I       
Sbjct: 1320 EMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILG 1379

Query: 55   RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             +  A EL + ++ +GI+++ VTYN LIH   +      A  L   +  +  + +   Y+
Sbjct: 1380 DIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYT 1439

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +I   C  G   EARK  + +   GL+P  VT+ ++I+  C++G +  A     +M E+
Sbjct: 1440 CLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEE 1499

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++N +I        T  AS    +
Sbjct: 1500 GVEPNEITYNVLIHALCRMGRTQLASHHFHE 1530



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 41/206 (19%)

Query: 22   MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
            +   RE+ S    G+  DV   + ++  L    R  +   + ++M+  GI   +VTYN L
Sbjct: 1069 LSAFREMAS---HGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTL 1125

Query: 82   IHDNWEKQGRFSAMA-LLQTLE-RDKYELNIEV-YSLVIDGLCRVGRWEEARKKLD---- 134
            + D++ K+GR   +A LL+ +E R    L  +V Y++VI GL R G  EEA + ++    
Sbjct: 1126 L-DSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRL 1184

Query: 135  ------------------------------QLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
                                          ++  +G++P VVTYN +I+GL + G++  A
Sbjct: 1185 SKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAA 1244

Query: 165  DKLLVQMKEKGCFPDSTSFNTVIQGF 190
                 +M+  G  PD  ++N+++ G+
Sbjct: 1245 QVKFAEMRAMGLLPDVITYNSLLNGY 1270



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 123  VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCFPDS 180
              RW++     +++ E G+ P +VTYN L++   K+G   +   LL +M+ +  GC P+ 
Sbjct: 1097 AARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPND 1156

Query: 181  TSFNTVIQGFLVKNETDRASSFLK 204
             ++N VI G   K + + A+  ++
Sbjct: 1157 VTYNVVITGLTRKGDLEEAAELVE 1180



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 107  ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILINGLCKKGMIMEA 164
            E +I  Y+ ++D   + GR ++    L ++  +G   +P  VTYN++I GL +KG + EA
Sbjct: 1116 EPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEA 1175

Query: 165  DKLL--VQMKEKGCFPDSTSFNTVIQGFLVK 193
             +L+  +++ +K     S ++N +I G L +
Sbjct: 1176 AELVEGMRLSKKA---SSFTYNPLITGLLAR 1203


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 2/180 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R  D+  + G+ +DV+ Y++ IN  C   ++ EAV LF KM   G+   +VTYN LI D 
Sbjct: 227 RVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLI-DG 285

Query: 86  WEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             K GR   A+     +  +K   ++  Y ++++GL +  +++EA   L ++  KG  P 
Sbjct: 286 LCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPN 345

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              +N LI+G  +KG + +A ++   M  KG  P++ + NT++QGF   N+ ++A   L+
Sbjct: 346 EFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLE 405



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDS-------AIKKGICLDVFVYSSLINGLCTFNR 55
           + +Q FK + + Y   + G+    ++D        A   G+  +++ Y+ ++ G C  +R
Sbjct: 548 MMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADR 607

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           +  AV LF+K+V   +    V YN LI  +  K G F+ A  L   +        I  YS
Sbjct: 608 IDNAVSLFNKLVYNKVELSYVVYNILIAAH-SKAGNFTEAFKLRDAMRSSNIHPTIFTYS 666

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G+C     EEA+   +++  +GL+P V  Y  LI G CK G + + + +L +M   
Sbjct: 667 SIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSN 726

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              P+  ++  +I G+     T  A+  L +
Sbjct: 727 CIQPNKITYTIMIDGYCKMGNTKEATKLLNE 757



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + Y + + G C    ID+A+          + L   VY+ LI          EA +L 
Sbjct: 591 NIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLR 650

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D M +  I   + TY+ +IH          A  + + +  +    N+  Y+ +I G C++
Sbjct: 651 DAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKL 710

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ ++    L +++   + P  +TY I+I+G CK G   EA KLL +M   G  PD+ ++
Sbjct: 711 GQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTY 770

Query: 184 NTVIQGFLVKNETDRA 199
             + +G+  +NE +  
Sbjct: 771 TVLQKGYCKENELEET 786



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 13  HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           + Y   IN  CK  +ID A+       + G+  +V  Y++LI+GLC   RL+EA+    +
Sbjct: 242 YTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGR 301

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           MV   +   LVTY  L++   + +    A ++L  +    +  N  V++ +IDG  R G 
Sbjct: 302 MVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGN 361

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
            ++A +  D ++ KGL P  VT+N L+ G C+   + +A+++L
Sbjct: 362 MDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVL 404



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           F+ SSL+      N L ++  +FD M   G+  ++ TY   I + + K G+   A+ L  
Sbjct: 211 FLMSSLVKS----NELHKSFRVFDAMCRGGVLIDVYTYATAI-NAYCKGGKIDEAVGLFL 265

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +       N+  Y+ +IDGLC+ GR EEA     ++ E  + P +VTY IL+NGL K  
Sbjct: 266 KMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFE 325

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
              EA+ +LV+M  KG  P+   FN +I G+  K   D A
Sbjct: 326 KFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDA 365



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 35/209 (16%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-- 89
           +++G+ LD   Y++LI G C   +++EA +L +KM+ QG   +  TYN L+    +K   
Sbjct: 514 VERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKM 573

Query: 90  ---GRF------------------------------SAMALLQTLERDKYELNIEVYSLV 116
              GR                               +A++L   L  +K EL+  VY+++
Sbjct: 574 DDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNIL 633

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           I    + G + EA K  D +    + P + TY+ +I+G+C   ++ EA  +  +M+ +G 
Sbjct: 634 IAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGL 693

Query: 177 FPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            P+   +  +I G+    + D+  S L++
Sbjct: 694 MPNVFCYTALIGGYCKLGQMDQIESILQE 722



 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 43/230 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E +   +   YGI +NG+ K  + D A         KG   + FV+++LI+G      
Sbjct: 302 MVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGN 361

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH-----DNWE----------------------- 87
           + +A+ + D M  +G+    VT+N L+      +  E                       
Sbjct: 362 MDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSY 421

Query: 88  ------KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK- 139
                 K  +F SA+ +++ L     ++N  + +L++ GLC+ G+  EA     +L++K 
Sbjct: 422 VLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKK 481

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           GL     T N L+ GLC++G + E   +  +M E+G   D  S+NT+I G
Sbjct: 482 GLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFG 531



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 112/247 (45%), Gaps = 43/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  + F  N  V+   I+G  +   +D A++       KG+  +   +++L+ G C  N
Sbjct: 336 EMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTN 395

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           ++++A ++ + +++  ++      + ++H   +     SA+ +++ L     ++N  + +
Sbjct: 396 QMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLT 455

Query: 115 LVIDGLCRVGR-------W-----------------------------EEARKKLDQLSE 138
           L++ GLC+ G+       W                             EE      ++ E
Sbjct: 456 LLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVE 515

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +GLV   ++YN LI G CK G I EA KL  +M ++G  PD+ ++N +++G   K + D 
Sbjct: 516 RGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDD 575

Query: 199 ASSFLKK 205
               L +
Sbjct: 576 VGRVLHE 582



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 70/145 (48%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A + F    ++G+   L + N L+    +      +  +   + R    +++  Y+  I+
Sbjct: 190 AFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAIN 249

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             C+ G+ +EA     ++ E G++P VVTYN LI+GLCK G + EA     +M E    P
Sbjct: 250 AYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNP 309

Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
              ++  ++ G +   + D A+S L
Sbjct: 310 SLVTYGILVNGLVKFEKFDEANSVL 334


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G C+   +D A       IK G+C DV  ++ L+ G C    L  A ELFD+M+
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML 444

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           ++G+  + + Y   I    +      A  + + ++ + +  ++  Y+++I+GLC++G ++
Sbjct: 445 SRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFD 504

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A + + ++  +G+VP  VTY  +I+     G++ +A+++   M +KG  P   ++  +I
Sbjct: 505 DANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLI 564

Query: 188 QGFLVKNETDRASSFL 203
             + V+   D A  + 
Sbjct: 565 HSYAVRGRLDFAKKYF 580



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 9/192 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K + H Y   I G CK    + A       + +G    V  Y++++  LC   R+ +A 
Sbjct: 273 LKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDAR 332

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
              D MV + +  +LV+YN LI+  + + G F+ A+ L   L       ++  Y+ +IDG
Sbjct: 333 RYLDVMVNEDLMPDLVSYNTLIY-GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG 391

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            CR G  + A+   D + + GL P VVT+ IL+ G C+ G +  A +L  +M  +G  PD
Sbjct: 392 GCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPD 451

Query: 180 STSFNTVIQGFL 191
             ++ T I G L
Sbjct: 452 CIAYTTRIVGEL 463



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y  RI G  K+     A         +G   D+  Y+ LINGLC      +A EL  KM 
Sbjct: 455 YTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMR 514

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +GI  + VTY  +IH +        A  +   + +     ++  Y+++I      GR +
Sbjct: 515 LEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLD 574

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A+K  D++ +KG+ P V+TYN LI GLCK+ M+  A  L  +M+ KG  P+  ++  +I
Sbjct: 575 FAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634

Query: 188 Q 188
            
Sbjct: 635 N 635



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y + ING+CK+   D A +       +GI  D   Y+S+I+      
Sbjct: 477 EMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISG 536

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            L++A E+F  M+ +GI   +VTY  LIH ++  +GR   A      ++      N+  Y
Sbjct: 537 LLRKAEEVFSDMLKKGIHPSVVTYTVLIH-SYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GLC+    + A     ++  KG+ P   TY ILIN         +A KL   M +
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655

Query: 174 KGCFPDSTSFNTVIQ 188
           +   PDS + + +++
Sbjct: 656 REIKPDSCTHSALMK 670



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           IK  I   +  ++++++  C    +  AVE+ D M   G     V+YN L+ +    +G 
Sbjct: 199 IKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLV-NGLSGKGE 257

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
           F  A  L++ +     +++   Y+ +I G C+   +EEA     ++  +G +P VVTYN 
Sbjct: 258 FDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNT 317

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           ++  LC+ G + +A + L  M  +   PD  S+NT+I G+
Sbjct: 318 IMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGY 357



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  DV   + ++  L   + + E  E++  M+   I   +VT+N ++ D+  K+G 
Sbjct: 164 VNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMM-DSRCKEGE 222

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+ +L  +     + N   Y+++++GL   G ++ A++ ++Q+S  GL     TYN 
Sbjct: 223 VGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNP 282

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           LI G CKK M  EA+ L  +M  +G  P   ++NT++
Sbjct: 283 LIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIM 319



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 14  VYGIRINGMCKIRE--IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++   I+G+ +  E      +KKGI   V  Y+ LI+      RL  A + FD+M  +G+
Sbjct: 529 IHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           +  ++TYN LI+   ++     A  L   +E      N   Y+++I+    +  W++A K
Sbjct: 589 SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALK 648

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCK 157
               + ++ + P   T++ L+  L K
Sbjct: 649 LYKDMLDREIKPDSCTHSALMKHLSK 674



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L++ + +F KMV  G+  ++   N ++    +K        +   + + +    I  ++ 
Sbjct: 153 LEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNT 212

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D  C+ G    A + LD +   G  P  V+YN+L+NGL  KG    A +L+ QM   G
Sbjct: 213 MMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLG 272

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
               + ++N +I+GF  K   + A+  L++ M
Sbjct: 273 LKVSAHTYNPLIRGFCKKEMFEEAND-LRREM 303


>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A  LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIXLLHR 77


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+  +    N + Y I + G CK+  +  A        +  +  DV+ Y+ LINGLC  
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++EA +L D+M    +  ++V+YN LI+   E      A  LL+ +     + N   +
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++   C+ G+ ++A   + ++ E G  P  VTYN LING CK G + EA + + +M  
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K    DS + NT+++    + + + A   L
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLL 476



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           + AIK GI  +V  ++ +I G C  N+ K+AVE  + M     + + VTYN ++ D   K
Sbjct: 197 NDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL-DTLCK 255

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A  LL  ++      N   Y++++ G C++G  +EA   ++ +++  L+P V T
Sbjct: 256 KGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN+LINGLC +G I EA KL  +M+     PD  S+NT+I G L  ++   A   L++
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++E+  K N   + I +   CK  ++D A        + G   D   Y++LING C   
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA    D+M  + +  + VT N ++     ++    A  LL +  +  Y ++   Y 
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  + G  + A K  D++ EK ++P  VTYN +I GLC+ G   +A   L ++ E 
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES 552

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD T++NT++ G+  + + ++A  F  K
Sbjct: 553 GLLPDETTYNTILHGYCREGDVEKAFQFHNK 583



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           +T+     +   Y + ING+C    I+ A K         +  DV  Y++LING   +++
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEVY 113
           + EA +L ++M  +G+    VT+N ++   W  K+G+   A   +  +E   +  +   Y
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVK--WYCKEGKMDDASNTITKMEESGFSPDCVTY 421

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+ G   EA + +D++  K +    VT N ++  LC++  + EA KLL   ++
Sbjct: 422 NTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARK 481

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G F D  S+ T+I G+      DRA
Sbjct: 482 RGYFIDEVSYGTLIVGYFKDGNVDRA 507



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + + I I G C   +   A+       K     D   Y+++++ LC   RL +A +L 
Sbjct: 207 NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLL 266

Query: 64  DKMVAQGITAELVTYNPLIHD----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             M ++G+     TYN L++      W K+    A  +++ + ++    ++  Y+++I+G
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKE----AANVIELMTQNNLLPDVWTYNMLING 322

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GR EEA K  D++    L+P VV+YN LING  +   I EA KLL +M EKG  P+
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + + N +++ +  + + D AS+ + K
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITK 408



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 3   LTEQRFKGNF---HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L+  R +G F     YG  I G  K   +D A+K       K I      Y+ +I GLC 
Sbjct: 476 LSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQ 535

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             + ++A+   ++++  G+  +  TYN ++H      + EK  +F    +  + + D + 
Sbjct: 536 CGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFT 595

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            NI     ++ GLC  G  E+A K  +    KG     VTYN LI  LCK+G + +A  L
Sbjct: 596 CNI-----LLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNL 650

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L +M+EK   PD  ++N +I           A  F+ K
Sbjct: 651 LSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSK 688



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   Y   ING CK        R +D   +K + +D    ++++  LC   +
Sbjct: 409 MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+EA +L      +G   + V+Y  LI   ++      A+ L   ++  +   +   Y+ 
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNC 528

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ G+ E+A  KL++L E GL+P   TYN +++G C++G + +A +   +M E  
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS 588

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  + N +++G  ++   ++A
Sbjct: 589 FKPDVFTCNILLRGLCMEGVLEKA 612



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 49/190 (25%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C+  +++ A       ++     DVF  + L+ GLC    L++A++LF+  
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTW 619

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G   + VTYN L                                   I  LC+ GR 
Sbjct: 620 VSKGKAIDTVTYNTL-----------------------------------ITSLCKEGRL 644

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A   L ++ EK L P   TYN +I  L   G I EA++ + +M EKG  PD      V
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQ-----V 699

Query: 187 IQGFLVKNET 196
           +Q  L KNET
Sbjct: 700 LQ--LDKNET 707



 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVPGVVTYNI 150
           A  + + ++R +   N+   + +++ L R         +R+  +   + G+VP V T+NI
Sbjct: 154 AFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +I G C +    +A + L  M +  C PD+ ++NT++     K     A   L
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLL 266


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +C+       ++ +D   + G   +   Y+SL+ GLC    L ++++L D+++
Sbjct: 135 YTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLI 194

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   A  LL  +     + N+  Y++++ GLC+ GR E
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTE 254

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   +L  KG  P VV+YNIL+  LC +G   EA+ LL +M      P + ++N +I
Sbjct: 255 DAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILI 314

Query: 188 QGFLVKNETDRASSFLKK 205
               +   T+ A   L++
Sbjct: 315 GSLTLHGRTEHALEVLEE 332



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  +  N   Y   + G+C        ++ +D  I+KG+  + + YS L+        
Sbjct: 158 MEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERG 217

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA +L D+++A+G    LV+YN L+     K+GR   AM L + L    +  N+  Y+
Sbjct: 218 ADEASKLLDEIIAKGGKPNLVSYNVLL-TGLCKEGRTEDAMQLFRELPSKGFSPNVVSYN 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++  LC  GRWEEA   L ++      P  VTYNILI  L   G    A ++L +M   
Sbjct: 277 ILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRA 336

Query: 175 GCFPDSTSFNTVI 187
              P ++S+N +I
Sbjct: 337 RFKPTASSYNPII 349



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 90/174 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG   DVF  + L+  LC   ++++A+++ + M+  GI  +  +Y  L+     K   
Sbjct: 89  VEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNV 148

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L+  +E   Y  N   Y+ ++ GLC  G   ++ + LD+L +KGLVP   TY+ L
Sbjct: 149 GYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFL 208

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +    K+    EA KLL ++  KG  P+  S+N ++ G   +  T+ A    ++
Sbjct: 209 LEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRE 262



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 23  CKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           CK+R+    ++  I  GI  D   Y+ L++ LC    +  A++L DKM   G      TY
Sbjct: 111 CKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATY 170

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N L+           ++ LL  L +     N   YS +++   +    +EA K LD++  
Sbjct: 171 NSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIA 230

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG  P +V+YN+L+ GLCK+G   +A +L  ++  KG  P+  S+N +++    +   + 
Sbjct: 231 KGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEE 290

Query: 199 ASSFLKK 205
           A+  L +
Sbjct: 291 ANVLLAE 297



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 30/198 (15%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           ++   RFK     Y   I  +CK R++D  +K   CLD  +Y        T+N +    E
Sbjct: 332 EMIRARFKPTASSYNPIIARLCKDRKVDLVVK---CLDQMMYRHCNPNEGTYNAIATLCE 388

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
                  +G+  E                   A +++Q+L   ++    E Y +VI  LC
Sbjct: 389 -------EGMVQE-------------------AFSIIQSLGNKQHFSTQEFYKIVITSLC 422

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    A + L ++++ G  P   TY+ LI GLC +GM+ EA ++   M+E     D+ 
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL-DTE 481

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++N++I G      TD A
Sbjct: 482 NYNSLILGCCKSRRTDLA 499



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 43/181 (23%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I  +C+      A        K G   D F YSSLI GLC    L EA+E+F  M 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM- 472

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                                               +  +L+ E Y+ +I G C+  R +
Sbjct: 473 -----------------------------------EENIKLDTENYNSLILGCCKSRRTD 497

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A    + +  KG +    TY IL+ G+  +  +  A ++L +++ +     ST    V+
Sbjct: 498 LALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQLRDVINQSTVERLVM 557

Query: 188 Q 188
           Q
Sbjct: 558 Q 558



 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++T+  F  +   Y   I G+C      +  EI S +++ I LD   Y+SLI G C   
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKLDTENYNSLILGCCKSR 494

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI 82
           R   A+++F+ MV +G  A   TY  L+
Sbjct: 495 RTDLALDVFEIMVGKGYLANETTYTILV 522


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 9/193 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  ++D A+K       +G+  D+  Y++LINGLC    LKEA  L ++M A G+
Sbjct: 360 IDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGL 419

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +T+  LI D   K G   SA+ + + +  +  EL+   ++ +I GLCR GR  +A 
Sbjct: 420 KPDKITFTTLI-DGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAG 478

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           + L  +   G  P   TY ++I+  CKKG +    KLL +M+  G  P   ++N ++ G 
Sbjct: 479 RMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGL 538

Query: 191 LVKNETDRASSFL 203
             + +   A   L
Sbjct: 539 CKQGQMKNAKMLL 551



 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 44/230 (19%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  +++   +       +G+C DVF +S+LINGLC   RL E   LFD+M  +G+
Sbjct: 290 ISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGL 349

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI D   K G+   A+   Q +       ++  Y+ +I+GLC+VG  +EAR
Sbjct: 350 VPNGVTFTTLI-DGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 131 KKLDQLSEKGLVPGVVTYNILING-----------------------------------L 155
           + +++++  GL P  +T+  LI+G                                   L
Sbjct: 409 RLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGL 468

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           C++G + +A ++L  M   G  PD  ++  VI  F  K +       LK+
Sbjct: 469 CREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 18/207 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++T    K +   +   I+G CK  +++SA       +++GI LD   +++LI+GLC   
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG 472

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ +A  +   M++ G   +  TY  +I D + K+G       LL+ ++ D +   +  Y
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVI-DCFCKKGDVKMGFKLLKEMQSDGHVPGVVTY 531

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +++GLC+ G+ + A+  LD +   G+ P  +TYNIL++G  K G  ++ D   +   E
Sbjct: 532 NALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVD---IFNSE 588

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRAS 200
           KG   D  S+  ++      NE+ + S
Sbjct: 589 KGLVTDYASYTALV------NESSKTS 609



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           Y   I  +++++ G C+ G    AR   D++ ++GL P VV++N LI+G CK G + E  
Sbjct: 244 YPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGF 303

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           +L   M+ +G  PD  +F+ +I G   +   D  S
Sbjct: 304 RLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGS 338



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L+ +++  G   ++  +N L+H   +     +A  +   + +      +  ++ +I G C
Sbjct: 235 LYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCC 294

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + G  EE  +    +  +G+ P V T++ LINGLCK+G + E   L  +M  +G  P+  
Sbjct: 295 KSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGV 354

Query: 182 SFNTVIQG 189
           +F T+I G
Sbjct: 355 TFTTLIDG 362


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ E+  K +   +   +  +C+  ++ +A+         G+  D   +++L+ G     
Sbjct: 175 EMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEG 234

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
            +K A+ +  +M+  G +   VT N LI + + K GR   A+  +Q    + +E +   Y
Sbjct: 235 SIKAALRVKARMLEMGCSPTKVTVNVLI-NGYCKLGRVEDALGYIQQEIANGFEPDQITY 293

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +  ++GLC+ G    A K +D + ++G  P V TYNI++N LCK G + EA  +L QM E
Sbjct: 294 NTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVE 353

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GC PD T+FNT+I      N  + A    ++
Sbjct: 354 RGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385



 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           + ING CK+  ++ A       I  G   D   Y++ +NGLC    +  A+++ D MV +
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE 319

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G   ++ TYN ++ +   K G+   A  +L  +       +I  ++ +I  LC   R EE
Sbjct: 320 GHDPDVFTYN-IVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEE 378

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A     Q++ KGL P V T+NILIN LCK G    A +L  +MK  GC PD  ++NT+I 
Sbjct: 379 ALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLID 438

Query: 189 GFLVKNETDRASSFLKK 205
                 +  +A   LK+
Sbjct: 439 NLCSLGKLGKALDLLKE 455



 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 17/204 (8%)

Query: 8   FKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +   Y   +NG+C+       ++ +D  +++G   DVF Y+ ++N LC   +L+EA 
Sbjct: 286 FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 345

Query: 61  ELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + ++MV +G   ++ T+N LI      +  E+    +    L+ L  D Y  NI     
Sbjct: 346 GILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNI----- 400

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+ LC+VG  + A +  +++   G  P  VTYN LI+ LC  G + +A  LL +M+  G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C   + ++NT+I G   K   + A
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEA 484



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G+CK   I+ A +       +GI  +   +++LI+GLC   R+ +A +L  +M
Sbjct: 467 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQM 526

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           +++G+    +TYN ++  ++ KQG     A +LQT+  + +E+++  Y  +I+GLC+ GR
Sbjct: 527 ISEGLQPNNITYNSIL-THYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            + A K L  +  KG+      YN +I  L ++    +A  L  +M E G  PD+ ++  
Sbjct: 586 TQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKI 645

Query: 186 VIQGF 190
           V +G 
Sbjct: 646 VFRGL 650



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+ +C + ++  A+         G       Y+++I+GLC   R++EA E+FD+M
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             QGI+   +T+N LI D   K  R   A  L+  +  +  + N   Y+ ++   C+ G 
Sbjct: 492 DLQGISRNAITFNTLI-DGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGD 550

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A   L  ++  G    VVTY  LINGLCK G    A KLL  M+ KG      ++N 
Sbjct: 551 IKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNP 610

Query: 186 VIQGFLVKNETDRASSFLKK 205
           VIQ    +N T  A +  ++
Sbjct: 611 VIQSLFRRNNTRDAMNLFRE 630



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +T +    + + + I IN +CK+ +   A++        G   D   Y++LI+ LC+  +
Sbjct: 386 VTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK 445

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L +A++L  +M + G     VTYN +I    +K     A  +   ++      N   ++ 
Sbjct: 446 LGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 505

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDGLC+  R ++A + + Q+  +GL P  +TYN ++   CK+G I +A  +L  M   G
Sbjct: 506 LIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANG 565

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              D  ++ T+I G      T  A   L+
Sbjct: 566 FEVDVVTYGTLINGLCKAGRTQVALKLLR 594



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           + +    G  +DV  Y +LINGLC   R + A++L   M  +G+ A    YNP+I   + 
Sbjct: 558 LQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFR 617

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-VGRWEEARKKLDQLSEKGLVPGVV 146
           +     AM L + +       +   Y +V  GLCR  G   EA   L ++ +KG +P   
Sbjct: 618 RNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFS 677

Query: 147 TYNILINGLCKKGM 160
           ++ +L  GL   GM
Sbjct: 678 SFRMLAEGLLNLGM 691



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +++ L    + +       ++ E+G+ P VVT+N L+  LC+   +  A  +L +M
Sbjct: 152 VYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM 211

Query: 172 KEKGCFPDSTSFNTVIQGFL 191
              G  PD T+F T++QGF+
Sbjct: 212 SSSGVAPDETTFTTLMQGFV 231


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
            D+  +    N + Y I + G CK+  +  A        +  +  DV+ Y+ LINGLC  
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            R++EA +L D+M    +  ++V+YN LI+   E      A  LL+ +     + N   +
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           ++++   C+ G+ ++A   + ++ E G  P  VTYN LING CK G + EA + + +M  
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           K    DS + NT+++    + + + A   L
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLL 476



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           + AIK GI  +V  ++ +I G C  N+ K+AVE  + M     + + VTYN ++ D   K
Sbjct: 197 NDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL-DALCK 255

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A  LL  ++      N   Y++++ G C++G  +EA   ++ +++  L+P V T
Sbjct: 256 KGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN+LINGLC +G I EA KL  +M+     PD  S+NT+I G L  ++   A   L++
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           +++E+  K N   + I +   CK  ++D A        + G   D   Y++LING C   
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            + EA    D+M  + +  + VT N ++     ++    A  LL +  +  Y ++   Y 
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G  + G  + A K  D++ EK ++P  VTYN +I GLC+ G   +A   L ++ E 
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES 552

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD T++NT++ G+  + + ++A  F  K
Sbjct: 553 GLLPDETTYNTILHGYCREGDVEKAFQFHNK 583



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 11/206 (5%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           +T+     +   Y + ING+C    I+ A K         +  DV  Y++LING   +++
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEVY 113
           + EA +L ++M  +G+    VT+N ++   W  K+G+   A   +  +E   +  +   Y
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVK--WYCKEGKMDDASNTITKMEESGFSPDCVTY 421

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+ G   EA + +D++  K +    VT N ++  LC++  + EA KLL   ++
Sbjct: 422 NTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARK 481

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
           +G F D  S+ T+I G+      DRA
Sbjct: 482 RGYFIDEVSYGTLIVGYFKDGNVDRA 507



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + + I I G C   +   A+       K     D   Y+++++ LC   RL +A +L 
Sbjct: 207 NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLL 266

Query: 64  DKMVAQGITAELVTYNPLIHD----NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
             M ++G+     TYN L++      W K+    A  +++ + ++    ++  Y+++I+G
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKE----AANVIELMTQNNLLPDVWTYNMLING 322

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           LC  GR EEA K  D++    L+P VV+YN LING  +   I EA KLL +M EKG  P+
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + + N +++ +  + + D AS+ + K
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITK 408



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 3   LTEQRFKGNF---HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
           L+  R +G F     YG  I G  K   +D A+K       K I      Y+ +I GLC 
Sbjct: 476 LSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQ 535

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFSAMALLQTLERDKYE 107
             + ++A+   ++++  G+  +  TYN ++H      + EK  +F    +  + + D + 
Sbjct: 536 CGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFT 595

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            NI     ++ GLC  G  E+A K  +    KG     VTYN LI  LCK+G + +A  L
Sbjct: 596 CNI-----LLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNL 650

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           L +M+EK   PD  ++N +I           A  F+ K
Sbjct: 651 LSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSK 688



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   Y   ING CK        R +D   +K + +D    ++++  LC   +
Sbjct: 409 MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+EA +L      +G   + V+Y  LI   ++      A+ L   ++  +   +   Y+ 
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNC 528

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLC+ G+ E+A  KL++L E GL+P   TYN +++G C++G + +A +   +M E  
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS 588

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  + N +++G  ++   ++A
Sbjct: 589 FKPDVFTCNILLRGLCMEGMLEKA 612



 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 32/214 (14%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G C+  +++ A       ++     DVF  + L+ GLC    L++A++LF+  
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTW 619

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V++G   + VTYN LI  +  K+GR   A  LL  +E  +   +   Y+ +I  L   GR
Sbjct: 620 VSKGKAIDTVTYNTLI-TSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGR 678

Query: 126 WEEARKKLDQLSEKGLVP-----------------------GVVTYNILINGLCKKGMIM 162
             EA + + ++ EKG +P                         V Y+  I  LC +G   
Sbjct: 679 IREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYK 738

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +A ++  + K+KG   D +++  ++ G + + ++
Sbjct: 739 DAMRIFGESKQKGITVDKSTYINLMDGLIKRRKS 772



 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVPGVVTYNI 150
           A  + + ++R +   N+   + +++ L R         +R+  +   + G+VP V T+NI
Sbjct: 154 AFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +I G C +    +A + L  M +  C PD+ ++NT++     K     A   L
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLL 266


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + EQ    N + Y   ING CK      A +       +G   +++ Y++ I+ LC  +R
Sbjct: 384 MKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 443

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             EA EL +K  + G+ A+ VTY  LI +  ++     A+A    + +  +E ++ + ++
Sbjct: 444 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNI 503

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I   CR  + +E+ +    +   GL+P   TY  +I+  CK+G I  A K    MK  G
Sbjct: 504 LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHG 563

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
           C PDS ++ ++I G   K+  D A
Sbjct: 564 CVPDSFTYGSLISGLCKKSMVDEA 587



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++SLI+GLC    +K+A E+ ++MV  G    + T+  LI    ++     A  L   L 
Sbjct: 290 FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 349

Query: 103 R-DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
           R D Y+ N+  Y+ +I G C+  +   A     ++ E+GL P V TY  LING CK G  
Sbjct: 350 RSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSF 409

Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             A +L+  M ++G  P+  ++N  I     K+    A   L K
Sbjct: 410 GRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 453



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 24  KIREID----SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           KI+E D      I++G   D    + ++  LC    +  A+  F KM+  G    L+ + 
Sbjct: 232 KIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFT 291

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-RKKLDQLSE 138
            LI    +K     A  +L+ + R+ ++ N+  ++ +IDGLC+ G  E+A R  L  +  
Sbjct: 292 SLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 351

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
               P V TY  +I G CK+  +  A+ L  +MKE+G FP+  ++ T+I G        R
Sbjct: 352 DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGR 411

Query: 199 A 199
           A
Sbjct: 412 A 412



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 20/210 (9%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK N   +   I+G+CK   I  A       ++ G   +V+ +++LI+GLC     ++A 
Sbjct: 283 FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAF 342

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-------AMALLQTLERDKYELNIEVY 113
            LF K+V         TY P +H      G +        A  L   ++      N+  Y
Sbjct: 343 RLFLKLVRSD------TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTY 396

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C+ G +  A + ++ + ++G +P + TYN  I+ LCKK    EA +LL +   
Sbjct: 397 TTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFS 456

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G   D  ++  +IQ    +N+ ++A +F 
Sbjct: 457 CGLEADGVTYTILIQEQCKQNDINQALAFF 486



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 10/198 (5%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
           ++    +K N + +   I+G+CK    + A +  + L        +V  Y+S+I G C  
Sbjct: 312 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 371

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
           ++L  A  LF +M  QG+   + TY  LI+ +  K G F  A  L+  +  + +  NI  
Sbjct: 372 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC-KAGSFGRAYELMNLMGDEGFMPNIYT 430

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+  ID LC+  R  EA + L++    GL    VTY ILI   CK+  I +A     +M 
Sbjct: 431 YNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMN 490

Query: 173 EKGCFPDSTSFNTVIQGF 190
           + G   D    N +I  F
Sbjct: 491 KTGFEADMRLNNILIAAF 508



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 1/173 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   Y  ++ G     +++EA      M+ +G   +  T   ++    E      
Sbjct: 211 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 270

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + +    ++ N+  ++ +IDGLC+ G  ++A + L+++   G  P V T+  LI+
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 330

Query: 154 GLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK+G   +A +L +++     + P+  ++ ++I G+  +++ +RA     +
Sbjct: 331 GLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 383



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 14/171 (8%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V   ++       RL EAV +   M  QG+T   +T N ++    E       + L++  
Sbjct: 149 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVE-------LGLIEYA 201

Query: 102 ERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           E    E+++         Y L++ G  R G+ +EA + L  + ++G +P   T  +++  
Sbjct: 202 ENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 261

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G++  A     +M + G  P+  +F ++I G   K    +A   L++
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 312



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I I   CK  +I+ A+       K G   D+ + + LI   C   ++KE+  LF  +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           V+ G+     TY  +I   + K+G    A+     ++R     +   Y  +I GLC+   
Sbjct: 525 VSLGLIPTKETYTSMI-SCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 583

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +EA K  + + ++GL P  VT   L    CK+     A  LL  + +K
Sbjct: 584 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKK 632



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+  CK  +ID A+K        G   D F Y SLI+GLC  + + EA +L++ M
Sbjct: 535 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 594

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           + +G++   VT   L ++  ++    +AM LL+ L++   +L I     ++  LC
Sbjct: 595 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDK---KLWIRTVRTLVRKLC 646


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ +     N  +Y + ING  K   +  A+         G+  DV   S+ I+GL    
Sbjct: 280 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 339

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R++EA+++F ++  +G+  ++ TY+ LI   + KQG    A  L   +       NI +Y
Sbjct: 340 RVQEALKVFSELKEKGLVPDVFTYSSLI-SGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DGLC+ G  + ARK  D + EKGL P  VTY+ +I+G CK   + EA  L  +M  
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  P S  +N ++ G   + + ++A +  ++
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 490



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E+    +   Y   I+G CK  E++ A +       KGI  ++F+Y++L++GLC   
Sbjct: 350 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 409

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A +LFD M  +G+  + VTY+ +I    + +    A +L   +     + +  VY+
Sbjct: 410 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 469

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G  E+A     ++ +KG     +++N LI+G CK   I EA +L  +M  K
Sbjct: 470 ALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAK 528

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++ TVI       + + A+   K+
Sbjct: 529 QIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G+  +  +Y+ LING      L EA+ +F  + A G+  ++ T +  IH    K
Sbjct: 279 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH-GLLK 337

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A+ +   L+      ++  YS +I G C+ G  E+A +  D++  KG+ P +  
Sbjct: 338 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 397

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN L++GLCK G I  A KL   M EKG  PDS +++T+I G+        A S   +
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 455



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+G+CK  +++ A       I  G   +   +  LI G C  + +  A+EL 
Sbjct: 79  NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 138

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  + +    V+Y  +I+     +    A  LL+ +     + N+ VYS +I G    
Sbjct: 139 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 198

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEAR+ LD +S  G+ P +  YN +I+ L K G + EA   L++++ +G  PD+ +F
Sbjct: 199 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 258

Query: 184 NTVIQGFLVKNETDRASSFL 203
              I G+    +   A+ + 
Sbjct: 259 GAFILGYSKTGKMTEAAKYF 278



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  +  GI +++  Y+ LI+GLC F ++++A E+   M+  G      T+  LI  
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A+ LL  +E+     +   Y  +I+GLC       A K L++++  GL P 
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           VV Y+ LI G   +G I EA +LL  M   G  PD   +N +I       + + AS++L
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 243



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   + + I G     ++ EA + FD+M+  G+      Y  LI+ +++      
Sbjct: 249 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 308

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+++ + L       +++  S  I GL + GR +EA K   +L EKGLVP V TY+ LI+
Sbjct: 309 ALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 368

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G CK+G + +A +L  +M  KG  P+   +N ++ G     +  RA
Sbjct: 369 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 414



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + + I G C+   +  A+       K+ +      Y ++INGLC    L  A +
Sbjct: 112 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 171

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L +KM   G+   +V Y+ LI   +  +GR   A  LL  +       +I  Y+ +I  L
Sbjct: 172 LLEKMTFSGLKPNVVVYSTLIM-GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+ EEA   L ++  +GL P  VT+   I G  K G + EA K   +M + G  P++
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 290

Query: 181 TSFNTVIQG 189
             +  +I G
Sbjct: 291 PLYTVLING 299



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 29/213 (13%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   ++G CK  +++ A       ++KG       +++LI+G C   +++EA +LF +M
Sbjct: 467 VYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEM 525

Query: 67  VAQGITAELVTYNPLIHDNWE-KQGRF------------------SAMALLQTLERDKYE 107
           +A+ I  + VTY  +I  +W  K G+                   +  AL + +     +
Sbjct: 526 IAKQIMPDHVTYTTVI--DWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVK 583

Query: 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
            +   Y LVI   C+     EA K  D++  KG++     +++LI  LCK+  + EA KL
Sbjct: 584 PDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKL 643

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           L +M E G  P   + +T+++ F    + D A+
Sbjct: 644 LDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 676



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEA------------ 59
           I+G CK  +I  A       I K I  D   Y+++I+  C   +++EA            
Sbjct: 506 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565

Query: 60  -----VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
                  LF+KMVA+G+  + VTY  +I+ + ++     A  L   +          ++ 
Sbjct: 566 IVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 625

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L+I  LC+     EA K LD++ E GL P +   + L+    + G + EA ++   +K  
Sbjct: 626 LLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 685

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD+T+   ++ G L   +++ A + +K+
Sbjct: 686 GLVPDTTTLIDLVNGNLNDTDSEDARNLIKQ 716



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  + + Y+ +  GLC   R+ EA   F++M   G+  +    + LI D + ++G  
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALI-DGFMREGDI 61

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + +   +      +N+  Y+++I GLC+ G+ E+A + L  +   G  P   T+ +L
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLL 121

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I G C++  +  A +LL +M+++   P + S+  +I G     +   A+  L+K
Sbjct: 122 IEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 175



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + EKGLVP   TY I+  GLC+   + EA     +M++ G  PD  + + +I GF+ + +
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 196 TDR 198
            D 
Sbjct: 61  IDE 63


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ++ +C+       ++ +D   + G   +   Y+SL+ GLC    L ++++L D+++
Sbjct: 135 YTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLI 194

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+     TY+ L+   ++++G   A  LL  +     + N+  Y++++ GLC+ GR E
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTE 254

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A +   +L  KG  P VV+YNIL+  LC +G   EA+ LL +M      P + ++N +I
Sbjct: 255 DAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILI 314

Query: 188 QGFLVKNETDRASSFLKK 205
               +   T+ A   L++
Sbjct: 315 GSLTLHGRTEHALEVLEE 332



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 90/174 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++KG   DVF  + L+  LC   ++++A+++ + M+  GI  +  +Y  L+     K   
Sbjct: 89  VEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNV 148

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             AM L+  +E   Y  N   Y+ ++ GLC  G   ++ + LD+L +KGLVP   TY+ L
Sbjct: 149 GYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFL 208

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +    K+    EA KLL ++  KG  P+  S+N ++ G   +  T+ A    ++
Sbjct: 209 LEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRE 262



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  +  N   Y   + G+C        ++ +D  I+KG+  + + YS L+        
Sbjct: 158 MEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERG 217

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             EA +L D+++A+G    LV+YN L+     K+GR   AM L + L    +  N+  Y+
Sbjct: 218 ADEASKLLDEIIAKGGKPNLVSYNVLL-TGLCKEGRTEDAMQLFRELPSKGFSPNVVSYN 276

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++  LC  GRWEEA   L ++      P  VTYNILI  L   G    A ++L +M   
Sbjct: 277 ILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRA 336

Query: 175 GCFPDSTSFNTVI 187
              P ++S+N +I
Sbjct: 337 RFKPTASSYNPII 349



 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 23  CKIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
           CK+R+    ++  I  GI  D   Y+ L++ LC    +  A++L DKM   G      TY
Sbjct: 111 CKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATY 170

Query: 79  NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
           N L+           ++ LL  L +     N   YS +++   +    +EA K LD++  
Sbjct: 171 NSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIA 230

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           KG  P +V+YN+L+ GLCK+G   +A +L  ++  KG  P+  S+N +++    +   + 
Sbjct: 231 KGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEE 290

Query: 199 ASSFLKK 205
           A+  L +
Sbjct: 291 ANVLLAE 297



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 30/198 (15%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           ++   RFK     Y   I  +CK R++D  +K   CLD  +Y        T+N +    E
Sbjct: 332 EMIRARFKPTASSYNPIIARLCKDRKVDLVVK---CLDQMMYRHCNPNEGTYNAIATLCE 388

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
                  +G+  E                   A +++Q+L   ++    E Y +VI  LC
Sbjct: 389 -------EGMVQE-------------------AFSIIQSLGNKQHFSTQEFYKIVITSLC 422

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    A + L ++++ G  P   TY+ LI GLC +GM+ EA ++   M+E     D+ 
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL-DTE 481

Query: 182 SFNTVIQGFLVKNETDRA 199
           ++N++I G      TD A
Sbjct: 482 NYNSLILGCCKSRRTDLA 499



 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 43/181 (23%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I  +C+      A        K G   D F YSSLI GLC    L EA+E+F  M 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM- 472

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                                               +  +L+ E Y+ +I G C+  R +
Sbjct: 473 -----------------------------------EENIKLDTENYNSLILGCCKSRRTD 497

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A    + +  KG +    TY IL+ G+  +  +  A ++L +++ +     ST    ++
Sbjct: 498 LALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQLRDVINQSTVERLIM 557

Query: 188 Q 188
           Q
Sbjct: 558 Q 558



 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMC------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
           +++T+  F  +   Y   I G+C      +  EI S +++ I LD   Y+SLI G C   
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKLDTENYNSLILGCCKSR 494

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI 82
           R   A+++F+ MV +G  A   TY  L+
Sbjct: 495 RTDLALDVFEIMVGKGYLANETTYTILV 522


>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIBEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 8/200 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + I+G+CK   +  A       ++ G    V + S L++G C +  + EA  +F+ M
Sbjct: 243 TFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELM 302

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G T   V+ N LI+   + +    A  + + + + + + ++  YS  +DGLCR  R 
Sbjct: 303 TNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRV 362

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL-VQMKEKGCFPDSTSFNT 185
           ++AR+ L  L +KG  P VV Y  LI+GLC  G + EA K+  V M+  GC P++ + N 
Sbjct: 363 DQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNV 422

Query: 186 VIQGFLVKNETDRASSFLKK 205
           ++ GF +    D A    ++
Sbjct: 423 LVNGFGLAGRLDEARELFQR 442



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I G+C++  +  A       +  G       Y+ L++G C  +R+ EAVEL +++
Sbjct: 138 TYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNEL 197

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           VA+G       YN +I   ++K     A      +E+D        ++++IDGLC+  R 
Sbjct: 198 VARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRV 257

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             A++      E G  P VV  + L++G CK G + EA ++   M  +GC P+  S N +
Sbjct: 258 ARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNIL 317

Query: 187 IQGF 190
           I G 
Sbjct: 318 INGL 321



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 8   FKG--NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKE 58
           F+G  N   Y I IN  CK + ID AI+        G       Y++LI GLC   RL E
Sbjct: 95  FRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGE 154

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVI 117
           A + ++++++ G  A  +TYN L+ D + K  R   A+ LL  L      +    Y+ +I
Sbjct: 155 AQQFYERLLSSGAGASFITYNILV-DGFCKADRVPEAVELLNELVARGGVVTSAPYNCII 213

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           D L + G+  EA    +++ + G+ P  VT+ +LI+GLCK   +  A ++     E G  
Sbjct: 214 DTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGS 273

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P     + ++ GF      D A
Sbjct: 274 PSVVICSCLMDGFCKYGGVDEA 295



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 9/195 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           H+  I I+ +CK   ID A          +G+ ++   Y+ LIN  C   R+ EA++LF 
Sbjct: 67  HLVNITIDSLCKSDMIDKAESWFQELKDFRGL-VNTVSYNILINAFCKTKRIDEAIQLFG 125

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M A G      TYN LI      +    A    + L       +   Y++++DG C+  
Sbjct: 126 EMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKAD 185

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           R  EA + L++L  +G V     YN +I+ L KKG I EA+    +M++ G  P   +F 
Sbjct: 186 RVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFT 245

Query: 185 TVIQGFLVKNETDRA 199
            +I G    N   RA
Sbjct: 246 VLIDGLCKANRVARA 260



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G CK   +D A +       +G   +    + LINGLC   RL +A E+F+++V +  
Sbjct: 283 MDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQA 342

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             ++VTY+  +           A  +L  L       ++ +Y+ +I GLC +GR +EARK
Sbjct: 343 KPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARK 402

Query: 132 KLD-QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             +  +   G  P   T N+L+NG    G + EA +L  +  E+G  PD  +F+ +
Sbjct: 403 VFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAM 458



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 85/175 (48%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G+      ++ LI+GLC  NR+  A E+F   +  G +  +V  + L+    +  G  
Sbjct: 234 KDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVD 293

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  + + +       N    +++I+GLC+  R  +AR+  +++ ++   P VVTY+  +
Sbjct: 294 EAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFM 353

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           +GLC+   + +A ++L  + +KG  PD   +  +I G       D A    + +M
Sbjct: 354 DGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDM 408



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 50  LCTFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107
           LC   +L EA+ELF  +V+ G  + A+L+           K GR      +  L  D+ +
Sbjct: 9   LCHVGKLDEALELFHSLVSDGCGLPADLLVRE------LSKAGRAEECLKVVKLMLDRQQ 62

Query: 108 L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEAD 165
           L    + ++ ID LC+    ++A     +L + +GLV   V+YNILIN  CK   I EA 
Sbjct: 63  LRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLV-NTVSYNILINAFCKTKRIDEAI 121

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +L  +MK  GC P ++++NT+I G         A  F ++
Sbjct: 122 QLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYER 161



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 28/159 (17%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I ING+CK + +  A       +K+    DV  YS+ ++GLC  +R+ +A ++   +V +
Sbjct: 316 ILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDK 375

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLE--RDKYELNIEVY---------SLVID 118
           G T ++V Y  LI          S +  L  L+  R  +E+++            +++++
Sbjct: 376 GGTPDVVMYTALI----------SGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVN 425

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           G    GR +EAR+   +  E+G+ P   T++ + N   K
Sbjct: 426 GFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAK 464



 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           +Y   I+G+C +  +D A K         G   + F  + L+NG     RL EA ELF +
Sbjct: 383 MYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQR 442

Query: 66  MVAQGITAELVTYNPLIHDNWEKQG 90
            V +G+  +  T++ + ++  + +G
Sbjct: 443 FVERGVQPDCRTFSAMANNTAKTEG 467


>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 376

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A       IK G   +V VY++LINGL   ++ ++A+ +F +M
Sbjct: 131 AYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREM 190

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                +  ++TYN LI+   + +    A  L++ L     +  +  YS+++ GLC   + 
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKV 250

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q++ KG  P V  +NILI+GLC  G I  A  L   M    C P+  S NT+
Sbjct: 251 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTL 310

Query: 187 IQGF 190
           ++GF
Sbjct: 311 MEGF 314



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 42/204 (20%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   YGI ++G CK   ID ++       +KG  LD F YS++INGLC    
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  A+ + + M+  G                                      N+ VY+ 
Sbjct: 145 LDRALSVLNGMIKSGCKP-----------------------------------NVHVYNT 169

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GL    ++E+A +   ++      P ++TYN LINGLCK  M  EA  L+ ++ +KG
Sbjct: 170 LINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG 229

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P   +++ +++G  + ++ +RA
Sbjct: 230 LDPGVITYSMLMKGLCLDHKVERA 253



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             +  Y++LINGLC      EA  
Sbjct: 161 KPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +++ +G+   ++TY+ L+           A+ L   +    ++ ++++++++I GLC
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +V++N L+ G  K G I  A  +  ++   G  PD  
Sbjct: 281 SVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 341 SYNITLKGLCSCNRISDAILFL 362



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNR 55
           ++ E +   +  VY   +NG  ++ +I    +    +       V  ++ ++ GL    +
Sbjct: 15  EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGK 74

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           + E + +++ M   G   + +TY  L+H  + K G    ++ +L+  E+    L+   YS
Sbjct: 75  VDEVISIWELMKESGFVEDSITYGILVH-GFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+    + A   L+ + + G  P V  YN LINGL       +A ++  +M   
Sbjct: 134 AMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTM 193

Query: 175 GCFPDSTSFNTVIQGFLVKNE 195
            C P   ++NT+I G L KNE
Sbjct: 194 HCSPTIITYNTLING-LCKNE 213



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 43/188 (22%)

Query: 23  CKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           C+  +ID A       ++  +  D  VY++++NG     ++K+  EL++ M ++G     
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG----- 55

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
                                            ++  +++++ GL   G+ +E     + 
Sbjct: 56  -------------------------------NRSVSSFNIMMRGLFDNGKVDEVISIWEL 84

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E G V   +TY IL++G CK G I ++  +L   ++KG   D+ +++ +I G   +  
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 196 TDRASSFL 203
            DRA S L
Sbjct: 145 LDRALSVL 152



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY+ +++G  RV + ++  +  + +  +G    V ++NI++ GL   G + E   +   M
Sbjct: 27  VYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGKVDEVISIWELM 85

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           KE G   DS ++  ++ GF      D++   L+
Sbjct: 86  KESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118


>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIRLLHXMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L   
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHX 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL  M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHXMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++ ++  K + + Y I I G+  + +++ AI       + G+  DV+ YS +I+G C   
Sbjct: 557 EMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAE 616

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R +E  +LFD+M++  +    V YN LI   + + GR S A+ L + ++      N   Y
Sbjct: 617 RTEEGQKLFDEMMSNNLQPNTVVYNHLI-GAYCRSGRLSMALELREDMKHKGISPNSATY 675

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G+  + R EEA+  L+++  +GL P V  Y  LI+G  K G +++ + LL +M  
Sbjct: 676 TSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS 735

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           K   P+  ++  +I G+        AS  L +
Sbjct: 736 KNVHPNKITYTVMIGGYARDGNVTEASRLLHE 767



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 2/190 (1%)

Query: 17  IRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76
           +R     K  E    + KG+  DV+++++ IN  C   +++EA+ELF KM   G+   +V
Sbjct: 229 VRATEFQKCCEAFHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVV 288

Query: 77  TYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
           TYN +I D     GR+  A    + +     E  +  YS+++ GL +  R  +A   L +
Sbjct: 289 TYNTVI-DGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKE 347

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           ++EKG  P V+ YN LI+ L + G + +A ++   M  KG    S+++NT+I+G+    +
Sbjct: 348 MTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQ 407

Query: 196 TDRASSFLKK 205
            D A   LK+
Sbjct: 408 ADIAERLLKE 417



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G+C+  +++   +       +G  +D   Y++LI+G C   +L EA    D+MV +G+
Sbjct: 504 LHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGL 563

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             +  TY+ LI           A+      +R+    ++  YS++IDG C+  R EE +K
Sbjct: 564 KPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQK 623

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
             D++    L P  V YN LI   C+ G +  A +L   MK KG  P+S ++ ++I+G  
Sbjct: 624 LFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 683

Query: 192 VKNETDRASSFLKK 205
           + +  + A   L++
Sbjct: 684 IISRVEEAKLLLEE 697



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + +++   IN  CK  +++ AI+        G+  +V  Y+++I+GL    R  EA    
Sbjct: 251 DVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFK 310

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KMV +G+   L+TY+ L+    + +    A  +L+ +    +  N+ VY+ +ID L   
Sbjct: 311 EKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEA 370

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G   +A +  D +  KGL     TYN LI G CK G    A++LL +M   G   +  SF
Sbjct: 371 GSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSF 430

Query: 184 NTVIQGFLVKNETDRASSFL 203
            +VI      +  D A  F+
Sbjct: 431 TSVICLLCSHHMFDSALRFV 450



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++     + N  VY   I   C+   +  A++       KGI  +   Y+SLI G+   +
Sbjct: 627 EMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 686

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--- 111
           R++EA  L ++M  +G+   +  Y  LI D +   G+   M  ++ L R+ +  N+    
Sbjct: 687 RVEEAKLLLEEMRMEGLEPNVFHYTALI-DGY---GKLGQMVKVECLLREMHSKNVHPNK 742

Query: 112 -VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
             Y+++I G  R G   EA + L ++ EKG+VP  +TY   I G  K+G +++A K
Sbjct: 743 ITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFK 798



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 9/196 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           + E+  +     Y I + G+ K + I  A        +KG   +V VY++LI+ L     
Sbjct: 313 MVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGS 372

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           L +A+E+ D MV++G++    TYN LI   + K G+   A  LL+ +    + +N   ++
Sbjct: 373 LNKAIEIKDLMVSKGLSLTSSTYNTLI-KGYCKSGQADIAERLLKEMLSIGFNVNQGSFT 431

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            VI  LC    ++ A + + ++  + + PG      LI+GLCK G   +A +L ++   K
Sbjct: 432 SVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNK 491

Query: 175 GCFPDSTSFNTVIQGF 190
           G   D+ + N ++ G 
Sbjct: 492 GFLVDTKTSNALLHGL 507



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 42/243 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++TE+ F  N  VY   I+ + +   ++ AI+       KG+ L    Y++LI G C   
Sbjct: 347 EMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSG 406

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTL-------- 101
           +   A  L  +M++ G      ++  +I     H  ++   RF    LL+ +        
Sbjct: 407 QADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLT 466

Query: 102 -------ERDKYELNIEVY---------------SLVIDGLCRVGRWEEARKKLDQLSEK 139
                  +  K+   +E++               + ++ GLC  G+ EE  +   ++  +
Sbjct: 467 TLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGR 526

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G V   V+YN LI+G C    + EA   + +M +KG  PD+ +++ +I+G L  N+ + A
Sbjct: 527 GFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEA 586

Query: 200 SSF 202
             F
Sbjct: 587 IQF 589



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%)

Query: 44  SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           ++LI+GLC   +  +AVEL+ K + +G   +  T N L+H   E         + + +  
Sbjct: 466 TTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILG 525

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             + ++   Y+ +I G C   + +EA   +D++ +KGL P   TY+ILI GL     + E
Sbjct: 526 RGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEE 585

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           A +     K  G  PD  +++ +I G      T+       + M
Sbjct: 586 AIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMM 629



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 7/196 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G+      D A       +++G+   +  YS L+ GL    R+ +A  + 
Sbjct: 286 NVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVL 345

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G    ++ YN LI    E      A+ +   +      L    Y+ +I G C+ 
Sbjct: 346 KEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKS 405

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+ + A + L ++   G      ++  +I  LC   M   A + + +M  +   P     
Sbjct: 406 GQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLL 465

Query: 184 NTVIQGFLVKNETDRA 199
            T+I G     +  +A
Sbjct: 466 TTLISGLCKHGKHSKA 481


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 42/196 (21%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++  + F  +   Y   I+G  KI+ +D A++       +G C DV  Y++LING C   
Sbjct: 587 EMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVK 646

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA ++ D+MVA+G+   +VTYN                                   
Sbjct: 647 RVSEAHDILDEMVAKGLVPSVVTYN----------------------------------- 671

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           L+IDG C+ G  ++A   L ++  K   P V+TY  LI+GLC  G   +A  L  +M+ K
Sbjct: 672 LLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 731

Query: 175 GCFPDSTSFNTVIQGF 190
           GC P+  SF  +I G 
Sbjct: 732 GCSPNRISFIALIHGL 747



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 81/157 (51%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           Y+ L+  LC   R  EA     +MV +G   ++V Y+  I    + +    A+ + + + 
Sbjct: 565 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 624

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
              Y  ++  Y+ +I+G C+V R  EA   LD++  KGLVP VVTYN+LI+G CK G I 
Sbjct: 625 ARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDID 684

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +A   L +M  K   P+  ++ T+I G       D A
Sbjct: 685 QAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDA 721



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 42/247 (17%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTF 53
           F + ++  + +   + I I+G+C   ++D A       ++ G   +V +Y++LI+ L   
Sbjct: 446 FFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 505

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLI-----------------------HDNW---- 86
           NRL+E   L  +M   G      T+N +                        H+ W    
Sbjct: 506 NRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHY 565

Query: 87  --------EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
                   +++    A   L  + R+ +  +I  YS  IDG  ++   ++A +    +  
Sbjct: 566 TLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICA 625

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
           +G  P VV YN LING CK   + EA  +L +M  KG  P   ++N +I G+    + D+
Sbjct: 626 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQ 685

Query: 199 ASSFLKK 205
           A   L +
Sbjct: 686 AFHCLSR 692



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 10  GNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           G+  +  +R+  MC     DS  +     D +  +S++   C   +  +A+ +F+++  +
Sbjct: 213 GSIDLVEMRLKEMC-----DSGWEP----DKYTLTSVLQAYCNSRKFDKALSVFNEIYGR 263

Query: 70  GITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           G     V    ++   + K G    A  L++ +E     LN + + ++I G  R  R ++
Sbjct: 264 GWVDGHVL--SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDK 321

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
           A +   ++ + G  P V  Y+ LI GLC K  I +A  LL +MKE G  PD
Sbjct: 322 ALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 372



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 36/216 (16%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT-----FNR 55
           F  +  VY   I G+C  +EI+ A+       + GI  D+ + S LI   C+     +  
Sbjct: 334 FAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCSEEVDIYRL 392

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--- 112
           ++E +E  D        A L+ YN +++     +    A  LL+ +  D Y  N EV   
Sbjct: 393 IEERLEDLDT------EAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKF 446

Query: 113 -------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
                        +S+VIDGLC  G+ + A      +   G    V+ YN LI+ L    
Sbjct: 447 FMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSN 506

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
            + E   LL +MK  G  P   + N++  G L + E
Sbjct: 507 RLEECYLLLKEMKGSGFRPTQFTHNSIF-GCLCRRE 541



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 25/218 (11%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + + I+G  +   +D A+       K G   DV VY +LI GLC    +++A+ L 
Sbjct: 302 NEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLL 361

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M   GI  ++   + LI    E+   +  +   + LE    E  + +Y+ V++GL   
Sbjct: 362 SEMKELGIDPDIQILSKLIAYCSEEVDIYRLIE--ERLEDLDTEAMLLLYNSVLNGLVNG 419

Query: 124 GRWEEARKKLDQLS----------------EKGLVPGVVTYNILINGLCKKGMIMEADKL 167
              ++A   L  ++                ++ + P   +++I+I+GLC  G +  A  L
Sbjct: 420 KSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSL 479

Query: 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              M   GC  +   +N +I      N  +     LK+
Sbjct: 480 FRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKE 517



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 59/243 (24%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +   C  R+ D A+        +G  +D  V S L+        + +A EL ++M   GI
Sbjct: 241 LQAYCNSRKFDKALSVFNEIYGRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGI 299

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
                T+  LIH  + +Q R   A+ L + +++  +  ++ VY  +I GLC     E+A 
Sbjct: 300 RLNEKTFCVLIH-GFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL 358

Query: 131 KKLDQLSEKGLVPGV---------------------------------VTYNILINGLCK 157
             L ++ E G+ P +                                 + YN ++NGL  
Sbjct: 359 HLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVN 418

Query: 158 KGMIMEADKLLVQMK----------------EKGCFPDSTSFNTVIQGFLVKNETDRASS 201
              + +A  LL  M                 ++   PD+TSF+ VI G     + D A S
Sbjct: 419 GKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALS 478

Query: 202 FLK 204
             +
Sbjct: 479 LFR 481



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 52/95 (54%)

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            V S+++    + G  ++A + ++++ + G+     T+ +LI+G  ++  + +A +L  +
Sbjct: 269 HVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKK 328

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M++ G  PD + ++ +I G   K E ++A   L +
Sbjct: 329 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSE 363



 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           I  L   G  EEA    DQ+    L VP   ++N L+  + K G I   +  L +M + G
Sbjct: 170 IRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSG 229

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASS 201
             PD  +  +V+Q +    + D+A S
Sbjct: 230 WEPDKYTLTSVLQAYCNSRKFDKALS 255


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 9/184 (4%)

Query: 14  VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   +NG CK  +       +D  I++G+  D   Y++LI+G C    ++ A+E+  +M
Sbjct: 382 LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              GI  + V ++ L+     K+GR   A   L+ + R   + +   Y++++D  C+ G 
Sbjct: 442 DQNGIELDRVGFSALVC-GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGD 500

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            +   K L ++   G VP VVTYN+L+NGLCK G +  AD LL  M   G  PD  ++NT
Sbjct: 501 AQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNT 560

Query: 186 VIQG 189
           +++G
Sbjct: 561 LLEG 564



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 14  VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           ++   I+G  +  EID         + KG+  D+ +Y++L+NG C    L  A  + D M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           + +G+  + +TY  LI D + + G   +A+ + + ++++  EL+   +S ++ G+C+ GR
Sbjct: 407 IRRGLRPDKITYTTLI-DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
             +A + L ++   G+ P  VTY ++++  CKKG      KLL +M+  G  P   ++N 
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525

Query: 186 VIQGF 190
           ++ G 
Sbjct: 526 LLNGL 530



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 44/247 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++T++  +     +   ING CK+  +D          K     DVF YS+LIN LC  N
Sbjct: 265 EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKEN 324

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
           ++  A  LFD+M  +G+    V +  LIH +  + G    M    Q +     + +I +Y
Sbjct: 325 KMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH-SRNGEIDLMKESYQKMLSKGLQPDIVLY 383

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING------------------- 154
           + +++G C+ G    AR  +D +  +GL P  +TY  LI+G                   
Sbjct: 384 NTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ 443

Query: 155 ----------------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                           +CK+G +++A++ L +M   G  PD  ++  ++  F  K +   
Sbjct: 444 NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQT 503

Query: 199 ASSFLKK 205
               LK+
Sbjct: 504 GFKLLKE 510



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 83/159 (52%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G  L+V+V++ L+N  C    + +A ++FD++  + +   +V++N LI+   +    
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                L   +E+ +   ++  YS +I+ LC+  + + A    D++ ++GL+P  V +  L
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+G  + G I    +   +M  KG  PD   +NT++ GF
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 58/94 (61%)

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
           + LN+ V++++++  C+ G   +A+K  D+++++ L P VV++N LING CK G + E  
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +L  QM++    PD  +++ +I     +N+ D A
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGA 329


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y + ING  K   +  A+         G+  DV   S+ I+GL    R++EA+++F
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++  +G+  ++ TY+ LI   + KQG    A  L   +       NI +Y+ ++DGLC+
Sbjct: 548 SELKEKGLVPDVFTYSSLI-SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  + ARK  D + EKGL P  VTY+ +I+G CK   + EA  L  +M  KG  P S  
Sbjct: 607 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 666

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N ++ G   + + ++A +  ++
Sbjct: 667 YNALVHGCCKEGDMEKAMNLFRE 689



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E+    +   Y   I+G CK  E++ A +       KGI  ++F+Y++L++GLC   
Sbjct: 549 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 608

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A +LFD M  +G+  + VTY+ +I    + +    A +L   +     + +  VY+
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 668

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G  E+A     ++ +KG     +++N LI+G CK   I EA +L  +M  K
Sbjct: 669 ALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAK 727

Query: 175 GCFPDSTSFNTVI 187
              PD  ++ TVI
Sbjct: 728 QIMPDHVTYTTVI 740



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G+  +  +Y+ LING      L EA+ +F  + A G+  ++ T +  IH    K
Sbjct: 478 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH-GLLK 536

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A+ +   L+      ++  YS +I G C+ G  E+A +  D++  KG+ P +  
Sbjct: 537 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 596

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           YN L++GLCK G I  A KL   M EKG  PDS +++T+I G+
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 8/187 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   ++G+CK  +I  A K       KG+  D   YS++I+G C    + EA  LF
Sbjct: 593 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 652

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M ++G+      YN L+H   ++     AM L + + +  +   +  ++ +IDG C+ 
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKS 711

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +EA +   ++  K ++P  VTY  +I+  CK G + EA+ L  +M+E+    D+ ++
Sbjct: 712 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 771

Query: 184 NTVIQGF 190
            +++ G+
Sbjct: 772 TSLMYGY 778



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+G+CK  +++ A       I  G   +   +  LI G C  + +  A+EL 
Sbjct: 278 NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 337

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  + +    V+Y  +I+     +    A  LL+ +     + N+ VYS +I G    
Sbjct: 338 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 397

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEAR+ LD +S  G+ P +  YN +I+ L K G + EA   L++++ +G  PD+ +F
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457

Query: 184 NTVIQGFLVKNETDRASSFL 203
              I G+    +   A+ + 
Sbjct: 458 GAFILGYSKTGKMTEAAKYF 477



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  +  GI +++  Y+ LI+GLC F ++++A E+   M+  G      T+  LI  
Sbjct: 264 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 323

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A+ LL  +E+     +   Y  +I+GLC       A K L++++  GL P 
Sbjct: 324 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 383

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           VV Y+ LI G   +G I EA +LL  M   G  PD   +N +I       + + AS++L
Sbjct: 384 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 442



 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   + + I G     ++ EA + FD+M+  G+      Y  LI+ +++      
Sbjct: 448 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 507

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+++ + L       +++  S  I GL + GR +EA K   +L EKGLVP V TY+ LI+
Sbjct: 508 ALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 567

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G CK+G + +A +L  +M  KG  P+   +N ++ G     +  RA
Sbjct: 568 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 613



 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + + I G C+   +  A+       K+ +      Y ++INGLC    L  A +
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L +KM   G+   +V Y+ LI   +  +GR   A  LL  +       +I  Y+ +I  L
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIM-GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+ EEA   L ++  +GL P  VT+   I G  K G + EA K   +M + G  P++
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 489

Query: 181 TSFNTVIQG 189
             +  +I G
Sbjct: 490 PLYTVLING 498



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 8/201 (3%)

Query: 13  HV-YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           HV Y   I+  CK  +++ A        ++ + +D   Y+SL+ G     +  E   LF+
Sbjct: 733 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFE 792

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           KMVA+G+  + VTY  +I+ + ++     A  L   +          ++ L+I  LC+  
Sbjct: 793 KMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 852

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              EA K LD++ E GL P +   + L+    + G + EA ++   +K  G  PD+T+  
Sbjct: 853 DLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLI 912

Query: 185 TVIQGFLVKNETDRASSFLKK 205
            ++ G L   +++ A + +K+
Sbjct: 913 DLVNGNLNDTDSEDARNLIKQ 933



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  +I  A       I K I  D   Y+++I+  C   +++EA  LF +M  + +
Sbjct: 705 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 764

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + VTY  L++  + K G+ S   AL + +     + +   Y LVI   C+     EA 
Sbjct: 765 IVDTVTYTSLMY-GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 823

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K  D++  KG++     +++LI  LCK+  + EA KLL +M E G  P   + +T+++ F
Sbjct: 824 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 883

Query: 191 LVKNETDRAS 200
               + D A+
Sbjct: 884 HEAGKMDEAT 893



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 12/199 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   ++G CK  +++ A       ++KG       +++LI+G C   +++EA +LF +M
Sbjct: 666 VYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEM 724

Query: 67  VAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +A+ I  + VTY  +I  +W  K G+   A  L + ++     ++   Y+ ++ G  ++G
Sbjct: 725 IAKQIMPDHVTYTTVI--DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 782

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  E     +++  KG+ P  VTY ++I   CK+  ++EA KL  ++  KG     T  +
Sbjct: 783 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 842

Query: 185 TVIQGFLVKNETDRASSFL 203
            +I     + +   AS  L
Sbjct: 843 LLITALCKREDLTEASKLL 861



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  + + Y+ +  GLC   R+ EA   F++M   G+  +    + LI D + ++G  
Sbjct: 202 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALI-DGFMREGDI 260

Query: 93  S-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
              + +   +      +N+  Y+++I GLC+ G+ E+A + L  +   G  P   T+ +L
Sbjct: 261 DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLL 320

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I G C++  +  A +LL +M+++   P + S+  +I G     +   A+  L+K
Sbjct: 321 IEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 374


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
            + +++G    V  Y+ L+  +C  +   EA+ + D+M A+G T  +VTYN +I +   +
Sbjct: 176 STMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVII-NGMCR 234

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +GR   A  +L  L    ++ +I  Y+ V+ GLC   RW++ +    ++ +K  VP  VT
Sbjct: 235 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 294

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           +++L+   C+ GM+  A ++L QM + GC P++T  N VI     +   D A  FL
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFL 350



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 103/242 (42%), Gaps = 45/242 (18%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L E R KG   N   Y + INGMC+   +D A          G   D+  Y++++ GLC 
Sbjct: 210 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA 269

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIH----------------------------- 83
             R  +   LF +MV +      VT++ L+                              
Sbjct: 270 ARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTL 329

Query: 84  -----DNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
                +   KQGR   A   L  +       +   Y+ V+ GLCR GRWE A++ L ++ 
Sbjct: 330 CNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV 389

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            K   P  VT+N  I  LC+KG+I +A KL+  M E GC     ++N ++ GF V+   D
Sbjct: 390 RKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVD 449

Query: 198 RA 199
            A
Sbjct: 450 SA 451



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 12/197 (6%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C+    + A       ++K    +   +++ I  LC    +++A++L + M 
Sbjct: 365 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 424

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G +  +VTYN L+H  +  QGR  SA+ L   L     E N   Y+ ++ GLC   R 
Sbjct: 425 EYGCSVGIVTYNALVH-GFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERL 480

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A + L ++ +K      VT+N+L++  C+KG + EA +L+ QM E GC P+  +FNT+
Sbjct: 481 DAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTL 540

Query: 187 IQGFLVKNETDRASSFL 203
           + G      ++ A   L
Sbjct: 541 LDGITKDCNSEEALELL 557



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 7/189 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           + N   Y   + G+C    +D+A       I+K   L+   ++ L++  C    ++EA+E
Sbjct: 461 EPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME 520

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L ++M+  G T  L+T+N L+    +      A+ LL  L      L+   YS V+D L 
Sbjct: 521 LVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLS 580

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R  R EEA + L  + + G+ P V  YN ++  LCK+    +A      M   GC P+ +
Sbjct: 581 REDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNES 640

Query: 182 SFNTVIQGF 190
           ++  +I+G 
Sbjct: 641 TYIILIEGL 649



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           +++     N  +  I IN +CK   +D A          G   D   Y++++ GLC   R
Sbjct: 318 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 377

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            + A EL  +MV +      VT+N  I    +K     A+ L++ +      + I  Y+ 
Sbjct: 378 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 437

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ G C  GR + A +  + L  +   P  +TY  L+ GLC    +  A +LL +M +K 
Sbjct: 438 LVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEMIQKD 494

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           C  ++ +FN ++  F  K   + A   + + M
Sbjct: 495 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM 526



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ +G    +VTY  L+    +  G   AM +L  +       NI  Y+++I+G+CR GR
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
            ++A++ L++LS  G  P +V+Y  ++ GLC      +   L  +M +K C P+  +F+ 
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +++ F      +RA   L++
Sbjct: 298 LVRFFCRGGMVERAIQVLQQ 317



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 93/179 (51%), Gaps = 3/179 (1%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           I+ I+   + G  + +  Y++L++G C   R+  A+ELF+ +  +  T   +TY  L+  
Sbjct: 417 IKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNT---ITYTTLLTG 473

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
               +   +A  LL  + +    LN   +++++   C+ G  EEA + ++Q+ E G  P 
Sbjct: 474 LCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPN 533

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           ++T+N L++G+ K     EA +LL  +  KG   D+ ++++V+     ++ T+ A   L
Sbjct: 534 LITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML 592



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G          R     + ++G  P VVTY +L+  +CK     EA  +L +M+ KGC 
Sbjct: 160 SGASATAEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCT 219

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           P+  ++N +I G   +   D A   L +
Sbjct: 220 PNIVTYNVIINGMCREGRVDDAKEILNR 247


>gi|226493605|ref|NP_001151863.1| rf1 protein [Zea mays]
 gi|195650381|gb|ACG44658.1| rf1 protein [Zea mays]
          Length = 467

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
           N +VY   I G+C+  ++D+A+        K  + LD  VY++L+  L    R    V L
Sbjct: 226 NVYVYTSLIKGLCEKGDVDAAMALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGL 285

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLC 121
            ++M   G+ A+ V YN ++    E +   +A  A+L  ++++  + +   Y+ ++ GLC
Sbjct: 286 LEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLC 345

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           ++GRW +A + ++ +  +G  P VVTY +L +G+C     +EA+++L +M  KG  P + 
Sbjct: 346 KLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGMCAAKEFLEANQVLDEMVFKGFAPSND 405

Query: 182 SFNTVIQGF 190
                +QG 
Sbjct: 406 GAQKFVQGI 414



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWE 87
           D  +++GI   V  + +L+  LC   +L++A E+ + MV Q  +   +  Y  LI    E
Sbjct: 180 DEMLRRGIAPTVVTFGTLVAALCAAGQLEDAFEVKEVMVRQYHVLPNVYVYTSLIKGLCE 239

Query: 88  KQGRFSAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           K    +AMAL + +  +    L+  VY+ ++  L +VGR       L+++   G+V   V
Sbjct: 240 KGDVDAAMALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTV 299

Query: 147 TYNILINGLCK-KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            YN ++ G C+ +  +  A  +L  M++ GC  D+ S+NT++ G 
Sbjct: 300 VYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGL 344



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G   D   Y+ L+        L  A  LFD+M+ +GI   +VT+  L+           A
Sbjct: 151 GTPPDACTYNILMRAAAASGSLGHARHLFDEMLRRGIAPTVVTFGTLVAALCAAGQLEDA 210

Query: 95  MALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILI 152
             + + + R  + L N+ VY+ +I GLC  G  + A    ++++ K  LV     Y  L+
Sbjct: 211 FEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKEEMAGKADLVLDSAVYATLV 270

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             L + G       LL +MK  G   D+  +N ++ GF  ++E D A++F
Sbjct: 271 RALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGF-CEDEKDLAAAF 319



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL-VQM 171
           Y++++      G    AR   D++  +G+ P VVT+  L+  LC  G + +A ++  V +
Sbjct: 159 YNILMRAAAASGSLGHARHLFDEMLRRGIAPTVVTFGTLVAALCAAGQLEDAFEVKEVMV 218

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++    P+   + ++I+G   K + D A + LK+ M
Sbjct: 219 RQYHVLPNVYVYTSLIKGLCEKGDVDAAMA-LKEEM 253


>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          G     + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGFAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   + + +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRXNGFAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G  ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGFAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 7/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N ++YG  ++G CK   ID A+        KG+     +Y+ +++GL    R   A ++F
Sbjct: 507 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMF 566

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+  G T  + TY  ++           A  LL+ L     + +I  +++VI  + +V
Sbjct: 567 HEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKV 626

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR +EA++    +S  GLVP V TYN++I+ L K+    EAD L + +++ G  PDS   
Sbjct: 627 GRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLL 686

Query: 184 NTVIQGFLVKNETDRASSFLK 204
           N +++  L K E  +AS++L 
Sbjct: 687 NHIVRMLLKKAEVAKASNYLS 707



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           ++ G+  DV  Y++LI+G      + +A ELF KM+ Q ++ ++VTYN LI    + +  
Sbjct: 149 LRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEM 208

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             +  +L+ +       N + Y+ +I G    G W+E+ +   ++S  GL+P VV  N  
Sbjct: 209 VKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF 268

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+ LC+   I EA  +   M  KG  P+  S++T++ G+
Sbjct: 269 IHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGY 307



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 4/200 (2%)

Query: 11  NFHVYGIRINGMCK--IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           N  +YG    GM K  +R        G+   V   +S I+ LC  NR+KEA ++FD MV 
Sbjct: 231 NSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVL 290

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWE 127
           +G    +++Y+ L+H  +  +G F+ M  L  L   K  + N   ++++I+   R G  +
Sbjct: 291 KGPKPNIISYSTLLH-GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMD 349

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A    + +  KG++P  VT+  +I+ LC+ G + +A      M + G  P    +  +I
Sbjct: 350 KAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLI 409

Query: 188 QGFLVKNETDRASSFLKKNM 207
           QG     E  +A   + + M
Sbjct: 410 QGCCNHGELVKAKELISEMM 429



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTF 53
           + + EQ    +   Y   I+G+CK +E       ++  +  GI  +   Y+SLI G  T 
Sbjct: 181 YKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTA 240

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
              KE+V +F +M + G+   +V  N  IH          A  +  ++     + NI  Y
Sbjct: 241 GMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISY 300

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S ++ G    G +      ++ +  KG+VP    +NILIN   + GM+ +A  +   M+ 
Sbjct: 301 STLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQN 360

Query: 174 KGCFPDSTSFNTVIQGF 190
           KG  PD+ +F TVI   
Sbjct: 361 KGMIPDTVTFATVISSL 377



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 78/163 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +SS+IN L    R+ E  ++ D MV  G    +VT+N L+           A ALL  + 
Sbjct: 441 FSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
               E N  +Y  ++DG C+ GR ++A      +  KG+ P  V YNI+++GL +     
Sbjct: 501 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTT 560

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            A K+  +M E G      ++  V+ G    N TD A+  L+K
Sbjct: 561 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEK 603



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 25/201 (12%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G  K  E+D A       I++ +  DV  Y+SLI+GLC    + ++  + ++MV
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMV 219

Query: 68  AQGITAELVTYNPLIHDN-----WEKQGR----FSAMALLQTLERDKYELNIEVYSLVID 118
             GI     TYN LI+       W++  R     S+  L+  +      +N   +   I 
Sbjct: 220 DAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCV------VNCNSF---IH 270

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LCR  R +EA+   D +  KG  P +++Y+ L++G   +G     + L+  M  KG  P
Sbjct: 271 ALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVP 330

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
           +   FN +I  +      D+A
Sbjct: 331 NHRFFNILINAYARCGMMDKA 351



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 8/139 (5%)

Query: 59  AVELFDKM------VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
           AVELF +M       A      + TYN LI D + +  R   A+A+   L R     ++ 
Sbjct: 100 AVELFKRMDRWACPHAAADAPTIYTYNILI-DCYRRMHRPELALAVFGRLLRTGLGPDVC 158

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +IDG  + G  ++A +   ++ E+ + P VVTYN LI+GLCK   +++++++L QM
Sbjct: 159 SYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQM 218

Query: 172 KEKGCFPDSTSFNTVIQGF 190
            + G  P++ ++N++I G+
Sbjct: 219 VDAGIRPNNKTYNSLIYGY 237



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 2/161 (1%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALL 98
           ++ Y+ LI+     +R + A+ +F +++  G+  ++ +YN LI D + K+G    A  L 
Sbjct: 122 IYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLI-DGFSKEGEVDKAYELF 180

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
             +       ++  Y+ +IDGLC+     ++ + L+Q+ + G+ P   TYN LI G    
Sbjct: 181 YKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTA 240

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GM  E+ ++  +M   G  P   + N+ I      N    A
Sbjct: 241 GMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEA 281



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
           I  Y+++ID   R+ R E A     +L   GL P V +YN LI+G  K+G + +A +L  
Sbjct: 122 IYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFY 181

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +M E+   PD  ++N++I G     E  ++   L++
Sbjct: 182 KMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQ 217



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           +   YG+ + G+C+    D A           +  D+  ++ +I+ +    R +EA ELF
Sbjct: 577 SIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELF 636

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             +   G+   + TYN +I +  +++    A  L  ++E+     +  + + ++  L + 
Sbjct: 637 AAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKK 696

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
               +A   L  + E  L     T ++L +   ++G   E  KLL
Sbjct: 697 AEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIKLL 741


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 8/201 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFNRLKEAVELF 63
           N  VY + ++G+C   +++ A      +K   C  DV  Y++L++ +C   R++E  +LF
Sbjct: 184 NVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLF 243

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           + M A G    ++T++ LIH          A+ +  ++     + N   Y+ +I GLCR 
Sbjct: 244 EAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRA 303

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK-EKGCFPDSTS 182
            +  +AR+  +++++  + P  V YN LI G CK+G + EA+KL  +M    G  P   +
Sbjct: 304 EKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVT 363

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           FNT+I GF    +  RA+  +
Sbjct: 364 FNTLIDGFCKLGKLGRANELV 384



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 7/194 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G+C+  ++  A        K G   +V VY+ L++GLC+  +L++A  LF +M +   
Sbjct: 157 ILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSC 216

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
           + ++VTYN L+    + +       L + +    Y  N+  +S +I GLCR G  E+A +
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
               + E G  P   TY  LI+GLC+   +++A +L  +M +    PD+ ++N++I G+ 
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 192 VKNETDRASSFLKK 205
            +   D A    ++
Sbjct: 337 KRGSMDEAEKLYRE 350



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 10/213 (4%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L+E   +G   +   Y   +  + K R +D A       I+ G   D  ++  LI GLC 
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ 162

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             ++K+A E F +M   G    +  YN L+H          A  L   ++      ++  
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT 222

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+ ++D +C+  R EE  K  + +   G VP V+T++ LI+GLC+ G + +A ++   M 
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           E GC P+  ++ T+I G     +  +A    +K
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARELFEK 315



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++ +CK R ++   K        G   +V  +S+LI+GLC    L++A+E+F  M
Sbjct: 222 TYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 281

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G      TY  LI      +    A  L + + +     +   Y+ +I G C+ G  
Sbjct: 282 LEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSM 341

Query: 127 EEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           +EA K   ++S   GL P +VT+N LI+G CK G +  A++L+ +M  KG   DS ++  
Sbjct: 342 DEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRI 401

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G     + D A    K+
Sbjct: 402 LIAGLSRATKLDEALEVYKQ 421



 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  +K +   Y I I+G+ KI ++D ++K       +G    +  YSSL+  L    R
Sbjct: 71  MVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A  LFD+M+  G   + + +  LI    +      A    + + +   + N+ VY++
Sbjct: 131 VDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNV 190

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++ GLC  G+ E+A     ++      P VVTYN L++ +CK   + E  KL   M+  G
Sbjct: 191 LLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+  +F+T+I G     E ++A
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKA 274



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 8/197 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   I+G+C+  E++ A++        G   + + Y++LI+GLC   ++ +A ELF
Sbjct: 254 NVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELF 313

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCR 122
           +KM    I  + V YN LI    ++     A  L + +      +  I  ++ +IDG C+
Sbjct: 314 EKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCK 373

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           +G+   A + + ++  KGL     TY ILI GL +   + EA ++  QM+EK    D  S
Sbjct: 374 LGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVS 433

Query: 183 FNTVIQGFLVKNETDRA 199
             + + G       D+A
Sbjct: 434 CVSFVGGLCKTGNIDQA 450



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 37/196 (18%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH---- 83
           ++  +  G   DVF ++ ++ G    N +++A E++  MV  G   + V+Y+ LIH    
Sbjct: 33  LEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 92

Query: 84  ----DNWEK-------QGRFSAMALLQTLER---------------------DKYELNIE 111
               D   K       +G+  +M    +L R                       +   + 
Sbjct: 93  IGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLM 152

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y L++ GLC+ G+ ++A ++  Q+ + G  P V  YN+L++GLC  G + +A+ L  +M
Sbjct: 153 FYELIL-GLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEM 211

Query: 172 KEKGCFPDSTSFNTVI 187
           K   C PD  ++NT++
Sbjct: 212 KSHSCSPDVVTYNTLL 227



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           K I  +VF YSS+I  L    + +E+ ++ ++M+A G   ++  +N ++           
Sbjct: 4   KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 63

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  + Q +    Y+ +   Y ++I GL ++G+ +E+ K L ++  +G  P +  Y+ L+ 
Sbjct: 64  AREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVR 123

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L K   +  A  L  +M   G  PD   F  +I G     +   AS   K+
Sbjct: 124 ALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ 175



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
            Y   I G CK   +D A K         G+   +  +++LI+G C   +L  A EL  +
Sbjct: 327 AYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAE 386

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M  +G+ A+  TY  LI           A+ + + +   K+ L+       + GLC+ G 
Sbjct: 387 MGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGN 446

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++A    +   + G VP   T+ IL   L K G + +A KL+   K +
Sbjct: 447 IDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 495



 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + +K +   V TY+ +I  L K+    E+ K+L +M   GC PD  +FN V+QGF   N 
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 196 TDRA 199
            ++A
Sbjct: 61  MEKA 64


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 20/208 (9%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++TE     N   Y   I+G C++ ++++A       +  G+C +V   ++L++GLC   
Sbjct: 386 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNG 445

Query: 55  RLKEAVELFDKMVAQ-----------GITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE 102
           +LK+A+E+F  M              G+  ++ TYN LI      +G+F  A  L + + 
Sbjct: 446 KLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILI-SGLINEGKFLEAEELYEEMP 504

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
                 +   Y+ VI GLC+  R +EA +  D +  K   P VVT+  LING CK G + 
Sbjct: 505 HRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 564

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +  +L  +M  +G   ++ ++ T+I GF
Sbjct: 565 DGLELFCEMGRRGIVANAITYITLIHGF 592



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 45/248 (18%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-LDVFVYSSLINGLCTFNRLKEA 59
           +T+  F      +   ++G+C    I  A+     +C  +V  +++L+NGLC   R+ EA
Sbjct: 139 ITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 198

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSL--- 115
           V L D+M+  G+    +TY  ++    +     SA+ LL+ +E   + + N+ ++ L   
Sbjct: 199 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERR 258

Query: 116 --VIDGLCRVGRWEEA---------RKKL---------------------------DQLS 137
             +I+G C  GRW EA         RKK+                           D++ 
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEML 318

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
            +G++P  +TY+ +I+G CK+  +  A+ +   M  KGC PD  +FNT+I G+      D
Sbjct: 319 PRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVD 378

Query: 198 RASSFLKK 205
                L +
Sbjct: 379 DGIKLLHE 386



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 45/239 (18%)

Query: 6   QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
           +R   N + + I +   C   ++  A+       K G    V  +S+L++GLC  +R+ E
Sbjct: 107 RRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISE 166

Query: 59  AVELF-------------------------------DKMVAQGITAELVTYNPLIHDNWE 87
           A++LF                               D+M+  G+    +TY  ++    +
Sbjct: 167 ALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCK 226

Query: 88  KQGRFSAMALLQTLERDKY-ELNIEVYSL-----VIDGLCRVGRWEEARKKLDQLSE-KG 140
                SA+ LL+ +E   + + N+ ++ L     +I+G C  GRW EA++ L ++ E K 
Sbjct: 227 MGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKK 286

Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + P VVTYN LIN   K+G   EA++L  +M  +G  P + +++++I GF  +N  D A
Sbjct: 287 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAA 345



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 18/219 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVY-----SSLING 49
           + E   + N   YG  ++GMCK+ +  SA+           I  +V ++     + +ING
Sbjct: 205 MLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMING 264

Query: 50  LCTFNRLKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKY 106
            C+  R  EA +L  +M+  + I+ ++VTYN LI + + K+G+F     L  + L R   
Sbjct: 265 FCSSGRWSEAQQLLQEMLERKKISPDVVTYNALI-NAFVKEGKFFEAEELYDEMLPRGII 323

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
              I  YS +IDG C+  R + A      ++ KG  P ++T+N LI G C+   + +  K
Sbjct: 324 PSTI-TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIK 382

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LL +M E G   ++ ++ T+I GF    + + A   L++
Sbjct: 383 LLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQE 421



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+  DV  Y+ LI+GL    +  EA EL+++M  +GI  + +TYN +IH    KQ R   
Sbjct: 472 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIH-GLCKQSRLDE 530

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  +  ++    +  N+  ++ +I+G C+ GR ++  +   ++  +G+V   +TY  LI+
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIH 590

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           G  K G I  A  +  +M   G +PD+ +   ++ G   K E  RA + L+
Sbjct: 591 GFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLE 641



 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 46/218 (21%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  + +GI      YSS+I+G C  NRL  A  +F  M  +G + +++T+N LI      
Sbjct: 315 DEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRA 374

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +     + LL  +       N   Y+ +I G C+VG    A+  L ++   G+ P VVT 
Sbjct: 375 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTC 434

Query: 149 NILINGLCKKGMI----------------------------------------------M 162
           N L++GLC  G +                                              +
Sbjct: 435 NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFL 494

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
           EA++L  +M  +G  PD+ ++N+VI G   ++  D A+
Sbjct: 495 EAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEAT 532



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 39/167 (23%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           + + ++ L+   C+ ++L  A+  F K+   G    +VT++ L+H               
Sbjct: 112 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLH--------------- 156

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
                               GLC   R  EA     Q+ +    P VVT+  L+NGLC++
Sbjct: 157 --------------------GLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCRE 192

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G ++EA  LL +M E G  P+  ++ T++ G     +T  A + L+K
Sbjct: 193 GRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 239



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +  + F  N   +   ING CK   +D  +       ++GI  +   Y +LI+G   
Sbjct: 535 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRK 594

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
              +  A+++F +M+A G+  + +T   ++   W K+    A+A+L+ L+
Sbjct: 595 VGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644


>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLFKR 182



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALXKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 16/215 (7%)

Query: 7   RFKGNFHVYGIR---------INGMCKIREIDSA-------IKKGICLDVFVYSSLINGL 50
           R K   H  G+          ING+CK  ++D A       + KG+  +   +++LI+G 
Sbjct: 192 RLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGH 251

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C   R+  A+E++ +M+ QG + +L+TYN LI+    K     A  L+  +     + + 
Sbjct: 252 CKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDK 311

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ +IDG C+ G  E A +   ++ E+ +    V Y  LI+GLC++G  ++A+K+L +
Sbjct: 312 ITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLRE 371

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M   G  P++ ++  +I GF  + +   AS  LK+
Sbjct: 372 MLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKE 406



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ING  ++ ++D   +        G+  DV+  + LINGLC  +++ EA ELF++M+ +G+
Sbjct: 178 INGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGL 237

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI D   K GR   A+ + + + R  Y  ++  Y+ +I GLCR G  ++AR
Sbjct: 238 VPNGVTFTTLI-DGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQAR 296

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             + ++S KGL P  +TY  LI+G CK+G +  A +L  +M E+    D  ++  +I G 
Sbjct: 297 DLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGL 356

Query: 191 LVKNETDRASSFLKK 205
             +     A   L++
Sbjct: 357 CQEGRAVDAEKMLRE 371



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A+       ++G   D+  Y++LI GLC    LK+A +L  +M  +G+
Sbjct: 248 IDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGL 307

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + +TY  LI  + ++    +A  L + +  +   L+   Y+ +I GLC+ GR  +A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEK 367

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L ++   GL P   TY ++ING CK+G +  A KLL +M+  G  P
Sbjct: 368 MLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
            + +++  G    L  +N L+H  + K+G    A ++   + +     ++  ++ +I+G 
Sbjct: 123 FYKEILECGYPTSLYFFNILMH-RFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGY 181

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            R+G  ++  +    +   G+ P V T  +LINGLCK+  + EA++L  +M +KG  P+ 
Sbjct: 182 IRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNG 241

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            +F T+I G       D A    K+
Sbjct: 242 VTFTTLIDGHCKSGRVDLALEIYKQ 266



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           +  Q +  +   Y   I G+C+  ++  A         KG+  D   Y++LI+G C    
Sbjct: 267 MLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ A EL  +M+ + I  + V Y  LI    ++     A  +L+ +     +     Y++
Sbjct: 327 LETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTM 386

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +I+G C+ G  + A K L ++   G VP VVT
Sbjct: 387 IINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQ------------------GITAELVTYNPLIHD 84
           Y ++I+ L T  R+ EA  L   +V++                     +++  ++ LI  
Sbjct: 16  YCTMIHFLSTHQRILEAKSLIQIVVSRKGKDSASAVFAAILETKGAQRSDIYVFSGLITA 75

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +   + K+ +  +    V++ L ++  ++       ++ E G    
Sbjct: 76  YLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPTS 135

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK+G I  A  +   + + G  P   SFNT+I G++   + D+ 
Sbjct: 136 LYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKG 190


>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC  D T +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGC--DQTVY 194

Query: 184 NTVI 187
              I
Sbjct: 195 TYTI 198



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEE 187



 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 9/203 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I   CK + +D A       ++ G+  DV   S+L++GLC   +  EA  LF
Sbjct: 256 NVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALF 315

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G+    VTY  LI D+  K  R S ++ LL  +      +++ +Y+ ++D L +
Sbjct: 316 REMDKIGVAPNHVTYCTLI-DSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+ EEA+  L       + P  VTY +L++  C+ G I  A+++L+QM+EK   P+  +
Sbjct: 375 EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVT 434

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           F+++I G + +    +A+ +++K
Sbjct: 435 FSSIINGLVKRGCLGKAADYMRK 457



 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 15/183 (8%)

Query: 19  INGMCK----------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           ++G+C+           RE+D   K G+  +   Y +LI+ L    R  E++ L  +MV+
Sbjct: 299 VDGLCRDGQFSEAYALFREMD---KIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVS 355

Query: 69  QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
           +G+  +LV Y  L+ D   K+G+   A  +L+  + D    N   Y++++D  CR G  +
Sbjct: 356 RGVVMDLVMYTALM-DRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNID 414

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A + L Q+ EK ++P VVT++ +INGL K+G + +A   + +MK+ G  P+  ++ T+I
Sbjct: 415 GAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLI 474

Query: 188 QGF 190
            GF
Sbjct: 475 DGF 477



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 42/237 (17%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           NF  Y + ++  C+   ID A +       K +  +V  +SS+INGL     L +A +  
Sbjct: 396 NFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYM 455

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV----------- 112
            KM   GI   +VTY  LI   ++ QG+ +A+ + + +  +  E N  V           
Sbjct: 456 RKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKN 515

Query: 113 ------------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                                   Y+ ++DGL + G    A K   +L EK L P  V Y
Sbjct: 516 GNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVY 575

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           N+ IN LC  G   EA   L +M+  G  PD  ++NT+I     + +T +A   LK+
Sbjct: 576 NVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKE 632



 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 84/156 (53%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G+  D+ VY++L++ LC     + A  + D+M+ +GI  + +T+N LI  + +     +A
Sbjct: 707 GLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNA 766

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
            A+   +       NI  ++ ++ GL   GR  EA   L  + + GL P  +TY+IL+ G
Sbjct: 767 FAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTG 826

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             KK   +EA +L  +M  KG  P ++++N+++  F
Sbjct: 827 YAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDF 862



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK++++ +A+        +G+ LDV  Y+SL+ G         A+E+ ++M A G+
Sbjct: 194 IDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGV 253

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
              +VTY  LI +  + +G   A +L + + R     ++   S ++DGLCR G++ EA  
Sbjct: 254 EPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYA 313

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++ + G+ P  VTY  LI+ L K     E+  LL +M  +G   D   +  ++    
Sbjct: 314 LFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLG 373

Query: 192 VKNETDRASSFLK 204
            + + + A   L+
Sbjct: 374 KEGKIEEAKDVLR 386



 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 82/150 (54%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           LDV  +++LI+G C    +  A+ + ++M  QG+  ++V YN L+   +      +A+ +
Sbjct: 185 LDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEV 244

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++ ++ D  E N+  Y+ +I   C+    +EA    + +   G++P VVT + L++GLC+
Sbjct: 245 VERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCR 304

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            G   EA  L  +M + G  P+  ++ T+I
Sbjct: 305 DGQFSEAYALFREMDKIGVAPNHVTYCTLI 334



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   YG  I+G  K +  ++A+        +G+  + FV  SL+NGL     ++ A  LF
Sbjct: 466 NVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALF 525

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             M  +G+  + V Y  L+   ++     +A  + Q L       +  VY++ I+ LC +
Sbjct: 526 KDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTL 585

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G++ EA+  L ++   GL P   TYN +I   C++G   +A KLL +MK     P+  ++
Sbjct: 586 GKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITY 645

Query: 184 NTVIQGFL 191
            T++ G L
Sbjct: 646 TTLVVGLL 653



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +D  + +GI  D   +++LI G C  + L  A  ++ +M+ QG++  + T+N L+    E
Sbjct: 735 LDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLL-GGLE 793

Query: 88  KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
             GR   A  +L  +++   E N   Y +++ G  +     EA +   ++  KG +P   
Sbjct: 794 SAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKAS 853

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           TYN L++   K GM+ +A +L  +MK +G    S++++ ++ G+
Sbjct: 854 TYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGW 897



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 43/230 (18%)

Query: 13  HV-YGIRINGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFD 64
           HV Y   ++G+ K   + +A K G       +  D  VY+  IN LCT  +  EA     
Sbjct: 537 HVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLK 596

Query: 65  KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +M   G+  +  TYN +I     +     A+ LL+ ++R+  + N+  Y+ ++ GL   G
Sbjct: 597 EMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAG 656

Query: 125 RWEEARKKLDQLSEKGLVPGVVT-----------------------------------YN 149
             ++A+  L++++  G  P  +T                                   YN
Sbjct: 657 VVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYN 716

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            L++ LC  GM   A  +L +M  +G  PD+ +FN +I G    +  D A
Sbjct: 717 TLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNA 766



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           D+  +  + N  V    +NG+ K   I+ A        ++G+ LD   Y++L++GL    
Sbjct: 492 DMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTG 551

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            +  A ++  +++ + ++ + V YN  I +     G+FS A + L+ +     E +   Y
Sbjct: 552 NMPAAFKVGQELMEKNLSPDAVVYNVFI-NCLCTLGKFSEAKSFLKEMRNTGLEPDQATY 610

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I   CR G+  +A K L ++    + P ++TY  L+ GL + G++ +A  LL +M  
Sbjct: 611 NTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMAS 670

Query: 174 KGCFPDSTSFNTVIQG 189
            G  P S +   V+Q 
Sbjct: 671 AGFAPTSLTHQRVLQA 686



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 2/175 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV-AQGITA-ELVTYNPLIHDNWEKQG 90
           K+G+  D    S+ + GLC    + EA  L + +V  +GI   ++V +N LI    + Q 
Sbjct: 143 KRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQD 202

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
             +A+A+++ +      L++  Y+ ++ G    G  + A + ++++   G+ P VVTY  
Sbjct: 203 MAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTA 262

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LI   CK   + EA  L   M   G  PD  + + ++ G     +   A +  ++
Sbjct: 263 LIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFRE 317



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 7/193 (3%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I G CK   +D+A       + +G+  ++  +++L+ GL +  R+ EA  +   M   G+
Sbjct: 754 ILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGL 813

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TY+ L+    +K  +  A+ L   +    +      Y+ ++    + G   +A++
Sbjct: 814 EPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKE 873

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
              ++  +G++    TY+IL+NG  K    +E   LL  MKE G  P   + +++ + F 
Sbjct: 874 LFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFS 933

Query: 192 VKNETDRASSFLK 204
               T  A   LK
Sbjct: 934 RPGMTGEARRLLK 946


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           L E + KG   N  ++   ++G C+  ++D A+       KKGI  DVF Y+ L NGLC 
Sbjct: 380 LLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCK 439

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
            +R  EA  + + MV +G+   +VT+   I + + K+G  + A  L + +E+     NI 
Sbjct: 440 LHRYDEAKCILNSMVEKGVKPNVVTFTMFI-EIYCKEGNLAEAERLFRDMEKKGEVPNII 498

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +ID  C+  + ++A K   ++  KGL+P + TY+ LI+G C  G + EA KL  +M
Sbjct: 499 TYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEM 558

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + KG   +  ++ ++I G   +   D A
Sbjct: 559 RLKGITRNVATYTSMISGLSKEGRADEA 586



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 100/172 (58%), Gaps = 2/172 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   ++ I  +   Y +LI G+C   +++ A  L  +M ++G+   LV +N  + D + +
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTM-DGYCR 404

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +G+   A+ L   +E+     ++  Y+++ +GLC++ R++EA+  L+ + EKG+ P VVT
Sbjct: 405 RGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVT 464

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           + + I   CK+G + EA++L   M++KG  P+  ++NT+I  +  K +  +A
Sbjct: 465 FTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQA 516



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 1/173 (0%)

Query: 28  IDSAIKKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
           +D  + KGI   +VF Y++L+N        K   E+   M  + +   + TY+ LI    
Sbjct: 239 MDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYS 298

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
                  A  + + +     E+++ VYS +I    R+G  + A    D++S++ +VP   
Sbjct: 299 SSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAH 358

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           TY  LI G+CK G +  A+ LL++M+ KG   +   FNT + G+  + + D A
Sbjct: 359 TYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEA 411



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-GR 91
           K+ +   V  YS LI    +   ++EA ++F++M  + I  ++  Y+ +I  +W ++ G 
Sbjct: 280 KEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMI--SWSRRLGN 337

Query: 92  FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A AL   + +     N   Y  +I G+C+ G+ E A   L ++  KG+   +V +N 
Sbjct: 338 MKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNT 397

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            ++G C++G + EA +L   M++KG   D  ++N +  G    +  D A   L
Sbjct: 398 TMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCIL 450



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 64/125 (51%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           KKG   ++  Y++LI+  C   ++K+A ++  +M+ +G+  +L TY+ LIH         
Sbjct: 490 KKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVD 549

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L   +       N+  Y+ +I GL + GR +EA K  D++ + GL+P    +  L+
Sbjct: 550 EALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609

Query: 153 NGLCK 157
               K
Sbjct: 610 GSFHK 614



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 43  YSSLINGLCTFNRL-KEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQT 100
           +  ++  +C+ NRL  E + ++D +  +G +  E   +  L+      +  F      + 
Sbjct: 147 FCDMLFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRM 206

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKG 159
           +E +K+E+ ++  +LVID LCR G  E+A++ +D++  KG+V P V TYN L+N    + 
Sbjct: 207 VESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRK 266

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                D++L  M+++       +++ +IQ +    + + A    ++
Sbjct: 267 DRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEE 312


>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC  D T +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGC--DQTVY 194

Query: 184 NTVI 187
              I
Sbjct: 195 TYTI 198



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEE 187



 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 9/192 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I G C +  ++ A++       KG   D   Y +++  LC   R+KE   L 
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 297

Query: 64  DKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           +KM+    +  + VTYN  +H   +      A+  L+  E  ++ ++   YS ++   CR
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR ++A++ ++++  KG +P VVTY  +INGLC++  + +A K+L QM + GC P++ S
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417

Query: 183 FNTVIQGFLVKN 194
           +  ++ G L KN
Sbjct: 418 YTALLNG-LCKN 428



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 7/206 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
           E+RF+ +   Y   ++  C+   +D A         KG   DV  Y+S+INGLC   ++ 
Sbjct: 338 ERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVD 397

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           +A ++  +M   G     V+Y  L++   +      A  ++   E D +  N   YS+++
Sbjct: 398 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLM 457

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
            G  R G+  EA   + ++ +KG  P  V  N+LI  LC++  + EA + + Q    GC 
Sbjct: 458 HGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA 517

Query: 178 PDSTSFNTVIQGFLVKNETDRASSFL 203
            +  +F TVI GF  K++ + A S L
Sbjct: 518 VNVVNFTTVIHGFCQKDDLEAALSLL 543



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 94/168 (55%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D   YS++++  C   R+ +A E+ ++M ++G   ++VTY  +I+   +++    A  +
Sbjct: 343 VDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKM 402

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ + +   + N   Y+ +++GLC+ G   EAR+ ++   E   +P  +TY++L++G  +
Sbjct: 403 LRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRR 462

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G   EA  L+ +M +KG FP     N +IQ    + + D A  F+++
Sbjct: 463 EGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQ 510



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  Y+ LI G C  +RL++A+EL  +M  +G + + ++Y  ++    +++       L+
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 297

Query: 99  QTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           + + +D   L  +V Y+  +  L + G  +EA + L +  E+      V Y+ +++  C+
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +G + +A +++ +M  KGC PD  ++ +VI G   + + D+A   L++
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQ 405



 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 42/219 (19%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLC--------------- 51
            Y   ING+C+ R++D A        K G   +   Y++L+NGLC               
Sbjct: 382 TYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMS 441

Query: 52  ----------TFNRL----------KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
                     T++ L           EA +L  +M+ +G     V  N LI    +++  
Sbjct: 442 EEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKV 501

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A   ++    +   +N+  ++ VI G C+    E A   LD +      P VVTY  +
Sbjct: 502 DEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTI 561

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+ L KKG I EA KL ++M   G  P   ++ TVI  +
Sbjct: 562 IDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQY 600



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +RE+   IKKG        + LI  LC   ++ EA    ++ +  G    +V +  +IH 
Sbjct: 473 VREM---IKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +K    +A++LL  +       ++  Y+ +ID L + GR EEA K   ++   GL+P 
Sbjct: 530 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPT 589

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            VTY  +I+  C+ G + +  KLL +M   + C    T++N VI+        ++A   L
Sbjct: 590 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLL 646

Query: 204 KK 205
            K
Sbjct: 647 GK 648



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 85  NWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143
           ++ + G+  +AM +L  +++   E ++ + +  I  L    R ++A + L+++    + P
Sbjct: 178 SYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEP 237

Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            V+TYN LI G C    + +A +L+ +M  KGC PD  S+ TV+ GFL K +  +    L
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVM-GFLCKEKRIKEVRLL 296

Query: 204 KKNM 207
            + M
Sbjct: 297 MEKM 300



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G C+  ++++A+             DV  Y+++I+ L    R++EA +L  KM+  G+
Sbjct: 527 IHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGL 586

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLER--DKYELNIEVYSLVIDGLCRVGRWEEA 129
               VTY  +IH  + + GR     LL+ LE+   + E     Y+ VI+ LC  G  E+A
Sbjct: 587 IPTPVTYRTVIH-QYCRMGRVED--LLKLLEKMLSRQECRT-AYNQVIEKLCSFGNLEQA 642

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            K L ++          T ++LI     KG+ + +  +  +M  +   PD      V + 
Sbjct: 643 YKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKK 702

Query: 190 FLVKNETDRASSFL 203
            +++ +++ A   +
Sbjct: 703 LMLEGKSEEADKLI 716


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E+    +   Y   I+  CK   +       D  + KG+ +D F  ++++  LC   R
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
            ++A EL      +G   + V+Y  ++   +++     A+ L   +   K   +I  Y+ 
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I GLCR+ R +EA  KL++L EKGLVP   TYNI+I+  CK+G +  A +   +M E  
Sbjct: 530 LIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             PD  + NT++ G  +  + D+A
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKA 613



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 95/181 (52%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  I++ +   +  Y++LI GLC   RLKEA++  +++V +G+  +  TYN +IH 
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             ++    +A      +  + ++ ++   + +++GLC  G+ ++A K  +   EKG    
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVD 628

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           V+TYN LI  +CK G +  A      M+ KG  PD+ ++N V+        ++ A + L 
Sbjct: 629 VITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLH 688

Query: 205 K 205
           K
Sbjct: 689 K 689



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 12/214 (5%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCT 52
           L E R KG       + I +  +CK  +++ A+ K       G+  DV  Y++LI+  C 
Sbjct: 372 LEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCK 431

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              + +A  L D+MV +G+  +  T N +++ N  K  R+  A  LL +  +  +  +  
Sbjct: 432 AGNVAKAFTLMDEMVGKGLKMDTFTLNTVLY-NLCKMKRYEDAEELLHSPPQRGFVPDEV 490

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y  V+    +    E A +  DQ+ E+ L+P + TYN LI GLC+   + EA   L ++
Sbjct: 491 SYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEL 550

Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            EKG  PD T++N +I  +  + + + A  F  K
Sbjct: 551 VEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNK 584



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNW 86
           ++S    G   D+  Y+ L  GLC   ++ EA  L D+M        ++VTYN L+   +
Sbjct: 301 VESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACF 360

Query: 87  EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
           + +    A+ LL+ +     +  +  +++V+  LC+ G+ EEA  KL++++E+GL P V+
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           TYN LI+  CK G + +A  L+ +M  KG   D+ + NTV+
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVL 461



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 16/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNR 55
           L E R   N + + + ++  C    +  A+         G+  D   Y++L+N  C    
Sbjct: 199 LIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM 258

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHD----NWEKQGRFSAMALLQTLERDKYELNIE 111
           L EA  L  +M   GI     TYN L+       W KQ    A  +++++    +E ++ 
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQ----ATKVVESMTAYGFEPDLR 314

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            Y+++  GLC+ G+ +EA +  D++      +P VVTYN L++   K     +A +LL +
Sbjct: 315 TYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M++KG  P   + N V++    + + + A   L+K
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEK 409



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 43/237 (18%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           +L E+    +   Y I I+  CK  ++++A       ++     DV   ++L+NGLC   
Sbjct: 549 ELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHG 608

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L +A++LF+  V +G   +++TYN LI    +     +A+     +E    + +   Y+
Sbjct: 609 KLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYN 668

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKG----------LVP--------------------- 143
           +V+  L   GR EEA   L +L++ G          L P                     
Sbjct: 669 VVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSE 728

Query: 144 -----GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
                 + TY   +NGLC  G + EA  +L +M +KG   DS+++ T+++G + + +
Sbjct: 729 KAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 57  KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
           + ++++F  ++   +     T+N L+H +  K     A+A L T++      +   Y+ +
Sbjct: 190 QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           ++  CR G   EAR  L ++   G+ P   TYN L++   + G I +A K++  M   G 
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 177 FPDSTSFNTVIQG----------FLVKNETDRASSFL 203
            PD  ++N +  G          F +K+E +R S+ L
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTAL 346



 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           Y   +NGLCT  +LKEA  + D+M+ +G+  +  TY  L+    ++Q R +  A   TL
Sbjct: 738 YMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTHAAGQSTL 796


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 42/233 (18%)

Query: 15  YGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAV------- 60
           Y   I+G C + ++D +IK+       G+  D + Y+SL+NG     R+++A+       
Sbjct: 518 YNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMF 577

Query: 61  ----------------------------ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
                                       EL+ KMV +G    + TYN ++    E     
Sbjct: 578 RKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVD 637

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ + + L   ++EL++  +S+VI+ L +VGR +EA+     +  +G VP V+TY+++I
Sbjct: 638 EALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMI 697

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               ++G++ E+D L + M++ GC  DS   N +++  L K +  RA ++L K
Sbjct: 698 KSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTK 750



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 46/221 (20%)

Query: 19  INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVEL-------- 62
           I G+C     D A+        + G   DVF Y++LI GLC   + +EA+EL        
Sbjct: 133 IKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADG 192

Query: 63  ------------------------------FDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
                                         F +M+ QG+  ++VTYN LI    + Q   
Sbjct: 193 GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMD 252

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+A+LQ +       +   Y+++I G C +G+ EEA + L ++S  GL P VVTY++LI
Sbjct: 253 KAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLI 312

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
              CK G   EA  +   M  KG  P+ST ++ ++ G+  K
Sbjct: 313 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATK 353



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   I+G  K  E+D A       + +G+  DV  Y+SLI+GLC    + +AV +   M 
Sbjct: 203 YNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMF 262

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G+  +  TYN +I           A+ LL+ +     + ++  YSL+I   C++GR  
Sbjct: 263 DKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCA 322

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EAR   D +  KG  P    Y+IL++G   KG +++   LL  M   G   +  +FN +I
Sbjct: 323 EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 382

Query: 188 QGFLVKNETDRA 199
             +      D+A
Sbjct: 383 CAYAKHGAVDKA 394



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDK 65
           + GI I   C +  +D A        K G  +     + LI GLC  NR  +A+++ F +
Sbjct: 93  IIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRR 152

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCR 122
           M   G T ++ +YN LI     ++    A+ LL  +  D       N+  Y+ VIDG  +
Sbjct: 153 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFK 212

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  ++A     ++  +GL P VVTYN LI+GLCK   + +A  +L  M +KG  PD+ +
Sbjct: 213 EGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT 272

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N +I+G+    + + A   LKK
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKK 295



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 97/178 (54%), Gaps = 10/178 (5%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWE 87
           + G+  DV  YS++I+ LC   R+++AV  F++MV++G++  ++++  LIH       W+
Sbjct: 403 QNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWK 462

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           K    +   + + +  D   +N      ++D LC+ GR  EA+   D +   G+ P VV+
Sbjct: 463 KVEELAFEMINRGIHPDAIFMNT-----IMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVS 517

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN LI+G C  G + E+ K L +M   G  PDS ++N+++ G+      + A +  ++
Sbjct: 518 YNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYRE 575



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I G C + +++ A++        G+  DV  YS LI   C   R  EA  +FD MV
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G       Y+ L+H    K        LL  + RD        ++++I    + G  +
Sbjct: 333 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 392

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           +A     ++ + GL P VV+Y+ +I+ LCK G + +A     QM  +G  P+  SF ++I
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452

Query: 188 QGF 190
            G 
Sbjct: 453 HGL 455



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 2/177 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  I  G+  DV  Y++LI+G C   ++ E+++  D+MV+ G+  +  TYN L+ + + K
Sbjct: 504 DMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLL-NGYFK 562

Query: 89  QGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A+AL + + R   +      ++++ GL + GR   AR+   ++ ++G    + T
Sbjct: 563 NGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIET 622

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           YN ++ GLC+   + EA ++   ++ K    D  +F+ VI   L     D A S   
Sbjct: 623 YNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFS 679



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   + G+C+   +D A++       K   LDV  +S +IN L    R+ EA  LF  MV
Sbjct: 623 YNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMV 682

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
            +G   +++TY+ +I  + E+     +  L  ++E++    +  + ++++  L   G   
Sbjct: 683 LRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVR 742

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
            A   L ++ EK       T  +LI  + +K
Sbjct: 743 RAGTYLTKIDEKNFSLEASTAALLIPIVSEK 773


>gi|341605687|gb|AEK82946.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + B A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLFKR 182



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKXDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G   D  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVBEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 107/199 (53%), Gaps = 9/199 (4%)

Query: 13  HVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           +   I + G+C    I+  IK       KG   ++  Y++LI+G C    ++ A +LF K
Sbjct: 209 YTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKK 268

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVG 124
           +  +G    L T+  L+ + + K G F A+ LL    +D+   +N+++Y+ +ID   ++G
Sbjct: 269 LKMKGFIPTLQTFGSLV-NGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLG 327

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
              +A+  L ++SE    P +VTYN LIN  C +G + EA+KLL Q   +G  P+  ++ 
Sbjct: 328 FDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYT 387

Query: 185 TVIQGFLVKNETDRASSFL 203
            ++ G+  + E  +A+ +L
Sbjct: 388 PLVHGYCKQGEYTKATDYL 406



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   I+G CK  E++SA K       KG    +  + SL+NG C     +    L 
Sbjct: 242 NIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLL 301

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +G++  +  YN +I   ++      A   L+ +  +  E ++  Y+ +I+  C  
Sbjct: 302 LEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSR 361

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  EEA K L+Q   +GL P  +TY  L++G CK+G   +A   L++M   G   D  S+
Sbjct: 362 GEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISY 421

Query: 184 NTVIQGFLVKNETDRASSFLKKNM 207
             +I G +V  E D A +   + M
Sbjct: 422 GALIHGLVVAGEVDTALTIRDRMM 445



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 2/167 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D+  Y++LIN  C+   ++EA +L ++ + +G+    +TY PL+H  + KQG ++ A   
Sbjct: 347 DLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVH-GYCKQGEYTKATDY 405

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L  +     E+++  Y  +I GL   G  + A    D++  +G++P    YN+L+NGL K
Sbjct: 406 LIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFK 465

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           KG +  A  +L +M ++   PD+  + T++ GF+     D A    +
Sbjct: 466 KGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQ 512



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G CK  E   A          G+ +D+  Y +LI+GL     +  A+ + D+M
Sbjct: 385 TYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRM 444

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +GI  +   YN L++  ++K     A  +L  +       +  VY+ ++DG  R G  
Sbjct: 445 MNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNL 504

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA+K    + EKGL PGVV YN++I G  K GM+  A   + +M+     PD  +F+T+
Sbjct: 505 DEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTI 564

Query: 187 IQGFL 191
           I G++
Sbjct: 565 IDGYV 569



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 9/200 (4%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           ++Y + +NG+ K  ++  A       + + I  D FVY++L++G      L EA +LF  
Sbjct: 454 NIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQL 513

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           ++ +G+   +V YN +I   + K G   +A+  +  + R  +  +I  +S +IDG  +  
Sbjct: 514 IIEKGLDPGVVGYNVMIK-GFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQH 572

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
                 K    + ++   P VVTY  LING C+KG    A+KL   M+  G  P   +++
Sbjct: 573 NMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYS 632

Query: 185 TVIQGFLVKNETDRASSFLK 204
            +I  F  + +  +A S+ +
Sbjct: 633 ILIGSFCKEAKLGKAVSYFE 652



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 53/214 (24%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
            +  +SL+N L    R++ A +L+D+M+ +    ++        DN+        + L  
Sbjct: 169 TYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICV------DNYTTSIMVKGLCLKG 222

Query: 100 TLERDKYEL-----------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
            +E D  +L           NI  Y+ +IDG C+ G  E A K   +L  KG +P + T+
Sbjct: 223 RIE-DGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTF 281

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKG--------------------------------- 175
             L+NG CK GM    D LL++MK++G                                 
Sbjct: 282 GSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSE 341

Query: 176 --CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             C PD  ++NT+I  F  + E + A   L++ +
Sbjct: 342 NCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTI 375



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 7/203 (3%)

Query: 8   FKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F      +G  +NG CK+     ID  +     +G+ ++V +Y+++I+         +A 
Sbjct: 274 FIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAK 333

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           +   +M       +LVTYN LI+    +     A  LL+   R     N   Y+ ++ G 
Sbjct: 334 DTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGY 393

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+ G + +A   L ++S  GL   +++Y  LI+GL   G +  A  +  +M  +G  PD+
Sbjct: 394 CKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDA 453

Query: 181 TSFNTVIQGFLVKNETDRASSFL 203
             +N ++ G   K +   A   L
Sbjct: 454 NIYNVLMNGLFKKGKLSMAKVML 476



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +K+    +V  Y+SLING C     K A +LF  M + G+   +VTY+ LI    ++   
Sbjct: 585 VKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKL 644

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCR-----VGR-----WEEARKKLDQLSEK-- 139
             A++  + +  +K   N   +  +++G        V R      E +R   +    +  
Sbjct: 645 GKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMI 704

Query: 140 --GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
             G       YN ++  LC++ M+  A +L  +M   G   D+ SF  +I G  ++  +
Sbjct: 705 GDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEGNS 763



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 21/178 (11%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + +Q  K N   Y   ING C+  E   A K        G+   V  YS LI   C   +
Sbjct: 584 MVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAK 643

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIH--------------DNWEKQGRFSAMALLQTL 101
           L +AV  F+ M+    T     ++ L++              +N  +  R         +
Sbjct: 644 LGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRM 703

Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
             D +      Y+ ++  LC+    + A +  +++   GL    V++  LI+G+C +G
Sbjct: 704 IGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEG 761


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           YG+ ++G+CK  E D A        + G+C+    Y+ +I+GLC    L EAV + ++M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMS 430

Query: 68  AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI  ++VTY+ LI + + + GR  +A  ++  + R     N  +YS +I   CR+G  
Sbjct: 431 KDGIDPDIVTYSALI-NGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +E  +  + +  +G  P   T+N+L+  LCK G + EA++ +  M   G  P++ SF+ +
Sbjct: 490 KETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCL 549

Query: 187 IQGFLVKNETDRASS 201
           I G+    E  +A S
Sbjct: 550 INGYGSSGEGLKAFS 564



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 4/162 (2%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQG 90
           +K+ IC DV  ++ LIN LC     K++  L  KM   G    +VTYN ++H  W  K+G
Sbjct: 185 LKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLH--WYCKKG 242

Query: 91  RF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
           RF +A+ LL  +       ++  Y+++I  LCR  R  +    L  + ++ + P  VTYN
Sbjct: 243 RFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYN 302

Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            L+NG   +G ++ A +LL +M   G  P+  +FN +I G +
Sbjct: 303 TLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHI 344



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           K G    +  Y+++++  C   R K A+EL D M  +G+ A++ TYN LIHD        
Sbjct: 221 KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSA 280

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
               LL+ + +     N   Y+ +++G    G+   AR+ L+++   GL P  VT+N LI
Sbjct: 281 KGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALI 340

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF---LKKN 206
           +G   +G   EA K+   M+ KG      S+  ++ G     E D A  F   +K+N
Sbjct: 341 DGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRN 397



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 8/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T+      F  YG  + G+CK   + +A K           +D  + ++LI  +C   
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSG 627

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVY 113
            L +AV LF +MV + I  +  TY  LI     K     A+   +  E R     N  +Y
Sbjct: 628 NLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMY 687

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +  +DG+ + G+W+       Q+ + GL   VVT N +I+G  + G I +   LL +M  
Sbjct: 688 TCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGN 747

Query: 174 KGCFPDSTSFNTVIQGF 190
           +   P+ T++N ++ G+
Sbjct: 748 QNQGPNLTTYNILLHGY 764



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           IR  ++ I +G   D F ++ L+  LC   ++ EA E    M + GI    V+++ LI+ 
Sbjct: 493 IRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLING 552

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
                    A ++   + +  +      Y  ++ GLC+ G    A K L  L        
Sbjct: 553 YGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVD 612

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            V  N LI  +CK G + +A  L  +M ++   PDS ++ ++I G   K +T  A  F K
Sbjct: 613 TVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAK 672

Query: 205 K 205
           +
Sbjct: 673 E 673



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 9/200 (4%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++  CK     +AI+       KG+  DV  Y+ LI+ LC  NR  +   L   M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDM 289

Query: 67  VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             + I    VTYN L+ + +  +G+   A  LL  +       N   ++ +IDG    G 
Sbjct: 290 RKRMIHPNEVTYNTLL-NGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGN 348

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
           ++EA K    +  KGL+   V+Y +L++GLCK      A    ++MK  G      ++  
Sbjct: 349 FKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G       D A   L +
Sbjct: 409 MIDGLCKNGFLDEAVVMLNE 428



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%)

Query: 33   KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
            K+GI  +   Y  L+NGLC    +K A  + ++M+A  I    V  + ++    +     
Sbjct: 887  KQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD 946

Query: 93   SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
             A  LL+++ + K    I  ++ ++   C+ G   EA +    +S  GL   +V+YN+LI
Sbjct: 947  EASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLI 1006

Query: 153  NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
             GLC KG +  A +L  +MK  G   + T++  ++ G L +      +  + K++
Sbjct: 1007 TGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGTEFSGTDIILKDL 1061



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG- 70
           I  MCK   +D A+       ++ I  D F Y+SLI+GLC   +   A+    +  A+G 
Sbjct: 620 ITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 71  ITAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
           +    V Y   + D   K G++ A     Q +++     ++   + +IDG  R+G+ E+ 
Sbjct: 680 LVPNKVMYTCFV-DGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKT 738

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L ++  +   P + TYNIL++G  K+  +  +  L   M   G  PD  +  ++I G
Sbjct: 739 HDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILG 798

Query: 190 FLVKN 194
               N
Sbjct: 799 ICESN 803



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTF 53
           F++  Q    N   Y I ++G  K + +        S I  GI  D     S+I G+C  
Sbjct: 743 FEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICES 802

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHD---NWEKQGRFSAMALLQTLERDKYELNI 110
           N L+  +++    + +G+  +  T+N LI     N E    F  + ++ +L      L+ 
Sbjct: 803 NMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSL---GISLDK 859

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
                ++  L R  R++E+R  L ++S++G+ P    Y  L+NGLC+ G I  A  +  +
Sbjct: 860 NTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEE 919

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           M      P + + + +++      + D AS  L+
Sbjct: 920 MIAHKICPPNVAESAMVRALAKCGKADEASLLLR 953



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++++E+F  M   G    + T N ++    +     S  + L+ + + K   ++  +++
Sbjct: 139 IQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+ LC  G ++++   + ++ + G  P +VTYN +++  CKKG    A +LL  M  KG
Sbjct: 199 LINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKG 258

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLK 204
              D  ++N +I      N + +    L+
Sbjct: 259 VNADVCTYNMLIHDLCRSNRSAKGYLLLR 287



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 9/202 (4%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + + +  +CK  ++  A          GI  +   +  LING  +     +A  +FD+M
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEM 569

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              G      TY  L+    +     +A   L++L+     ++  + + +I  +C+ G  
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNL 629

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNT 185
           ++A     ++ ++ ++P   TY  LI+GLC+KG  + A     + + +G   P+   +  
Sbjct: 630 DKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTC 689

Query: 186 VIQGFLVKNETDRASSFLKKNM 207
            + G + K    +A  + ++ M
Sbjct: 690 FVDG-MFKAGQWKAGFYFRQQM 710



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 19   INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            +NG+C++ +I +A       I   IC      S+++  L    +  EA  L   M+   +
Sbjct: 901  LNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKL 960

Query: 72   TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               + ++  L+H   +      A+ L   +     +L++  Y+++I GLC  G    A +
Sbjct: 961  VPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFE 1020

Query: 132  KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMKEKGCFPDSTSFNTVIQ 188
              +++   G +  V TY  L+ G+  +G      D +L  +  +G F  + SFN +I 
Sbjct: 1021 LFEEMKRDGFLANVTTYKALVGGILSQGTEFSGTDIILKDLLARG-FITAMSFNHMIN 1077


>gi|115457858|ref|NP_001052529.1| Os04g0350000 [Oryza sativa Japonica Group]
 gi|113564100|dbj|BAF14443.1| Os04g0350000, partial [Oryza sativa Japonica Group]
          Length = 263

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 35/213 (16%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +DS    G+  D++ Y++L++G C   R+ +A+ LF  M+ + +T   V+YN ++H  ++
Sbjct: 1   LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 60

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR------------------------- 122
            +    A  +   +      ++I  Y+ V+ GLCR                         
Sbjct: 61  ARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILT 120

Query: 123 ----------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
                     VGR +EA++    +S  GLVP ++TY ++I  L K+    +AD L   M+
Sbjct: 121 FNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSME 180

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +  C PDS   N +I+  L K E  +A ++L K
Sbjct: 181 KSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSK 213



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E     + H Y   + G+C+    D A           +  D+  ++ +I  +    
Sbjct: 73  EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 132

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R +EA ELF  +   G+   ++TY  +I +  +++    A  L  ++E+     +  + +
Sbjct: 133 RRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILN 192

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
            +I  L   G   +A   L ++ +KG++P   T ++LI      G   E  KLL +
Sbjct: 193 EIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 248


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ +     N  +Y + ING  K   +  A+         G+  DV   S+ I+GL    
Sbjct: 568 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNG 627

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R++EA+++F ++  +G+  ++ TY+ LI   + KQG    A  L   +       NI +Y
Sbjct: 628 RVQEALKVFSELKEKGLVPDVFTYSSLI-SGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + ++DGLC+ G  + ARK  D + EKGL P  VTY+ +I+G CK   + EA  L  +M  
Sbjct: 687 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 746

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           KG  P S  +N ++ G   + + ++A +  ++
Sbjct: 747 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 778



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 8/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           +L E+    +   Y   I+G CK  E++ A +       KGI  ++F+Y++L++GLC   
Sbjct: 638 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 697

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            ++ A +LFD M  +G+  + VTY+ +I    + +    A +L   +     + +  VY+
Sbjct: 698 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 757

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            ++ G C+ G  E+A     ++ +KG     +++N LI+G CK   I EA +L  +M  K
Sbjct: 758 ALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAK 816

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              PD  ++ TVI       + + A+   K+
Sbjct: 817 QIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 847



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D  +  G+  +  +Y+ LING      L EA+ +F ++ A G+  ++ T +  IH    K
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIH-GLLK 625

Query: 89  QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GR   A+ +   L+      ++  YS +I G C+ G  E+A +  D++  KG+ P +  
Sbjct: 626 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 685

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           YN L++GLCK G I  A KL   M EKG  PDS +++T+I G+        A S   +
Sbjct: 686 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 8/187 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N  +Y   ++G+CK  +I  A K       KG+  D   YS++I+G C    + EA  LF
Sbjct: 682 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 741

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M ++G+      YN L+H   ++     AM L + + +  +   +  ++ +IDG C+ 
Sbjct: 742 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKS 800

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
            + +EA +   ++  K ++P  VTY  +I+  CK G + EA+ L  +M+E+    D+ ++
Sbjct: 801 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860

Query: 184 NTVIQGF 190
            +++ G+
Sbjct: 861 TSLMYGY 867



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y + I+G+CK  +++ A  I KG+       +   +  LI G C  + +  A+EL 
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+M  + +    V+Y  +I+     +    A  LL+ +     + N+ VYS++I      
Sbjct: 427 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASE 486

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           GR EEAR+ LD +S  G+ P +  YN +I+ L K G + EA   L++++ +G  PD+ +F
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 546

Query: 184 NTVIQGFLVKNETDRASSFL 203
              I G+    +   A+ + 
Sbjct: 547 GAFILGYSKTGKMTEAAKYF 566



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           +R  D  +  GI +++  Y+ LI+GLC F ++++A E+   MV  G      T+  LI  
Sbjct: 353 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG 412

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
              +     A+ LL  +E+     +   Y  +I+GLC       A K L++++  GL P 
Sbjct: 413 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 472

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           VV Y+ILI     +G I EA +LL  M   G  PD   +N +I       + + AS++L
Sbjct: 473 VVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 531



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   + + I G     ++ EA + FD+M+  G+      Y  LI+ +++      
Sbjct: 537 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 596

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+++ + L       +++  S  I GL + GR +EA K   +L EKGLVP V TY+ LI+
Sbjct: 597 ALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 656

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G CK+G + +A +L  +M  KG  P+   +N ++ G     +  RA
Sbjct: 657 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 702



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N  +Y + I GMC++ +ID A++       KG+  + + Y+ +  GLC   
Sbjct: 253 EMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAK 312

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R+ EA   F++M   G+  +    + LI D + ++G     + +   +      +N+  Y
Sbjct: 313 RMNEAKLTFEEMQKTGLKPDYNACSALI-DGFMREGDIDEVLRIKDVMVSCGIPINLITY 371

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           +++I GLC+ G+ E+A + L  +   G  P   T+ +LI G C++  +  A +LL +M++
Sbjct: 372 NVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +   P + S+  +I G     +   A+  L+K
Sbjct: 432 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 463



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   + + I G C+   +  A+       K+ +      Y ++INGLC    L  A +
Sbjct: 400 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 459

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGL 120
           L +KM   G+   +V Y+ LI   +  +GR   A  LL  +       +I  Y+ +I  L
Sbjct: 460 LLEKMTFSGLKPNVVVYSILIM-AYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
            + G+ EEA   L ++  +GL P  VT+   I G  K G + EA K   +M + G  P++
Sbjct: 519 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 578

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
             +  +I G         A S  ++
Sbjct: 579 PLYTVLINGHFKAGNLMEALSIFRR 603



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 8/201 (3%)

Query: 13   HV-YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
            HV Y   I+  CK  +++ A        ++ + +D   Y+SL+ G     +  E   LF+
Sbjct: 822  HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFE 881

Query: 65   KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
            KMVA+G+  + VTY  +I+ + ++     A  L   +          ++ L+I  LC+  
Sbjct: 882  KMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 941

Query: 125  RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
               EA K LD++ E GL P +   N L+    + G + EA ++   +K  G  PD+T+  
Sbjct: 942  DLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLI 1001

Query: 185  TVIQGFLVKNETDRASSFLKK 205
             ++ G L   +++ A + +K+
Sbjct: 1002 DLVNGNLNDTDSEDARNLIKQ 1022



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  +I  A       I K I  D   Y+++I+  C   +++EA  LF +M  + +
Sbjct: 794 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 853

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + VTY  L++  + K G+ S   AL + +     + +   Y LVI   C+     EA 
Sbjct: 854 IVDTVTYTSLMY-GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 912

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           K  D++  KG++     +++LI  LCK+  + EA KLL +M E G  P   + NT+++ F
Sbjct: 913 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSF 972

Query: 191 LVKNETDRAS 200
               + D A+
Sbjct: 973 HEAGKMDEAT 982



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 35/201 (17%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
            DV+ Y+ L+  LC    L+ A  +  +M  +G+      Y+ +I    +      A+ L
Sbjct: 226 FDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVEL 285

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-------------- 143
            +++       N   Y+++  GLCR  R  EA+   +++ + GL P              
Sbjct: 286 KRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 345

Query: 144 ---------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
                                 ++TYN+LI+GLCK G + +A ++L  M   GC P+S +
Sbjct: 346 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRT 405

Query: 183 FNTVIQGFLVKNETDRASSFL 203
           F  +I+G+  ++   RA   L
Sbjct: 406 FCLLIEGYCREHNMGRALELL 426



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 12/199 (6%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           VY   ++G CK  +++ A       ++KG       +++LI+G C   +++EA +LF +M
Sbjct: 755 VYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEM 813

Query: 67  VAQGITAELVTYNPLIHDNWE-KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           +A+ I  + VTY  +I  +W  K G+   A  L + ++     ++   Y+ ++ G  ++G
Sbjct: 814 IAKQIMPDHVTYTTVI--DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 871

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           +  E     +++  KG+ P  VTY ++I   CK+  ++EA KL  ++  KG     T  +
Sbjct: 872 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 931

Query: 185 TVIQGFLVKNETDRASSFL 203
            +I     + +   AS  L
Sbjct: 932 LLITALCKREDLTEASKLL 950


>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL      Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 184



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 188

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +    +S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGNV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  +S+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I  F    + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKR 182



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 9/170 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VT++ ++ +   K GR   A+   QT + +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTFSVVV-NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           R +EA +  +++SEKG       YN LI+   K G + EA  L  +M+E+
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEEE 186



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++    +SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +F+ V+ G       + A  + +
Sbjct: 62  YAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQ 111



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   + + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D + K G+   AM L + +E ++
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DAFTKHGKVDEAMTLFKRMEEEE 187



 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  NVEDAIRLLHR 77


>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
           KGI +    +S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G   
Sbjct: 1   KGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGNVE 59

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ LL  +  + ++ ++  +S+V++GLC+ GR EEA          GL    + Y+ LI
Sbjct: 60  DAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLI 119

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL K G I EA++L  +M EKGC  DS  +N +I  F    + D A +  K+
Sbjct: 120 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKR 172



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 10/173 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 8   HAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHR 67

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VT++ ++ +   K GR   A+   QT + +   +N   YS +IDGL + G
Sbjct: 68  MIDEGFKPDVVTFSVVV-NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAG 126

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGC 176
           R +EA +  +++SEKG       YN LI+   K G + EA  L  +M KE+GC
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEKEEGC 179



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   + + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 68  MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D + K G+   AM L + +E+++
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALI-DAFTKHGKVDEAMTLFKRMEKEE 177


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  ++D A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q ++ +L+TYN LI+    K     A  L+  +     + +   Y+ +IDG C+ 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKE 324

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A +   ++ ++ +    V Y  LI+GLC++G  ++A+K+L +M   G  PD+ ++
Sbjct: 325 GDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITY 384

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +    S  LK+
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKE 406



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 9/168 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A++       + +  D+  Y++LI GLC    LK+A +L D+M  +G+
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGL 307

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +TY  LI D   K+G   +A    + + ++  +L+   Y+ +I GLC+ GR+ +A 
Sbjct: 308 KPDKITYTTLI-DGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAE 366

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           K L ++   GL P  +TY ++IN  CKKG +    KLL +M+  G  P
Sbjct: 367 KVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMP 414



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
           G    ++ ++ L++  C    ++ A  +F+ +   G+   +V++N L+ + + + G    
Sbjct: 131 GYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLM-NGYIRLGDLDE 189

Query: 95  MALLQT-LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              L+T +     + ++  YS++I+GLC+  + ++A +  D++ +KGLVP  VT+  LI+
Sbjct: 190 GFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLID 249

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G CK G +  A ++  QM  +   PD  ++NT+I G   K +  +A   +
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLI 299



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 73/144 (50%)

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            +++++  G  A L  +N L+H   +      A ++   + +     ++  ++ +++G  
Sbjct: 123 FYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYI 182

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R+G  +E  +    +   G+ P V TY++LINGLCK+  + +A++L  +M +KG  P+  
Sbjct: 183 RLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 242

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           +F T+I G       D A    K+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ 266



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNR 55
           +  Q    +   Y   I G+C+  +       ID    KG+  D   Y++LI+G C    
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGD 326

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L+ A E   +M+ + I  + V Y  LI    ++     A  +L+ +     + +   Y++
Sbjct: 327 LETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTM 386

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +I+  C+ G      K L ++   G +P VVT
Sbjct: 387 IINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 17  IRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
           I +NG+CK  +I  A       +  G+     +Y++LING C    L+ A  +F +M ++
Sbjct: 333 ILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSR 392

Query: 70  GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
            I  + +TYN LI+   + +    A  L+  +E++    ++E ++ +ID   R G+ E+ 
Sbjct: 393 LIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKC 452

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
              L  + EKGL P VV+Y  ++N  CK G I+EA  +L  M  K   P +  +N +I  
Sbjct: 453 FIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDA 512

Query: 190 FLVKNETDRA 199
           ++    TD+A
Sbjct: 513 YIECGSTDQA 522



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 44/229 (19%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   ING C+I +++ A         + I  D   Y++LINGL    R+ EA +L  +M
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEM 424

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
              G+   + T+N LI D + + G+      +L  ++    + N+  Y  +++  C+ G+
Sbjct: 425 EKNGVNPSVETFNTLI-DAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGK 483

Query: 126 WEEARKKLDQ-------------------------------LSEK----GLVPGVVTYNI 150
             EA   LD                                L+EK    G+ P +VTYN+
Sbjct: 484 ILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNL 543

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           LI GLCK+  I EA++LL  ++  G  PD  S+NT+I     ++ TDRA
Sbjct: 544 LIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRA 592



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+    N   Y   I+G  K  +++S        ++ G+  +V  Y+ L++GLC   
Sbjct: 213 EMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAG 272

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
           R+ E   + D+M ++ +  +  TY+ ++ D   + G    M +L +   +   ++     
Sbjct: 273 RMGETAAVLDEMASRKMVPDGFTYS-ILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTC 331

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S++++GLC+ G+  +A + L  L   GL+   V YN LING C+ G +  A  +  QMK 
Sbjct: 332 SILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKS 391

Query: 174 KGCFPDSTSFNTVIQGF 190
           +   PD  ++N +I G 
Sbjct: 392 RLIRPDHITYNALINGL 408



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 8   FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            K N   Y + ++G+C+          +D    + +  D F YS L +G       +  +
Sbjct: 254 LKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTML 313

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
            LF++ V +G+     T + L+ +   K G+ S A  +LQTL          +Y+ +I+G
Sbjct: 314 SLFEESVKKGVKIGAYTCSILL-NGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLING 372

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C++G  E A     Q+  + + P  +TYN LINGL K   I EA  L+++M++ G  P 
Sbjct: 373 YCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPS 432

Query: 180 STSFNTVIQGF 190
             +FNT+I  +
Sbjct: 433 VETFNTLIDAY 443



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           + F Y+ +I GL       +AV+LFD+M  + +    +TYN +I  + +K    S   L 
Sbjct: 187 NAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLW 246

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--------------- 143
             + R   + N+  Y++++ GLCR GR  E    LD+++ + +VP               
Sbjct: 247 SQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRT 306

Query: 144 --------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
                               G  T +IL+NGLCK G I +A+++L  +   G    +  +
Sbjct: 307 GDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIY 366

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+I G+    + + A S  ++
Sbjct: 367 NTLINGYCQIGDLEGAFSIFQQ 388



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KG+  +V  Y S++N  C   ++ EAV + D M  + +      YN +I    E     
Sbjct: 461 EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTD 520

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A  L + ++      +I  Y+L+I GLC+  +  EA + LD L   GL P V++YN LI
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLI 580

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           +  C +     A +L  +M + G  P   ++
Sbjct: 581 SACCYRSNTDRALELEKEMWKCGIKPSPRTY 611



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ E+  K N   YG  +N  CK  +I  A+        K +     VY+++I+      
Sbjct: 458 DMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECG 517

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
              +A  L +KM + G+   +VTYN LI    ++     A  LL +L       ++  Y+
Sbjct: 518 STDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYN 577

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C     + A +   ++ + G+ P   TY +L + L   G + E + L  QM +K
Sbjct: 578 TLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDK 637

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
              P S  +N ++  +    E  +  + L+K M
Sbjct: 638 DVVPCSGIYNIMVDAYAKCGEESKVEA-LRKEM 669



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
             G+   +  Y+ LI GLC  +++ EA EL D +   G+  ++++YN LI     +    
Sbjct: 531 SSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTD 590

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ L + + +   + +   Y ++   L   GR  E      Q+ +K +VP    YNI++
Sbjct: 591 RALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMV 650

Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
           +   K G   + + L  +M +KG
Sbjct: 651 DAYAKCGEESKVEALRKEMSDKG 673



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 11/143 (7%)

Query: 14  VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y + I G+CK  +I       DS    G+  DV  Y++LI+  C  +    A+EL  +M
Sbjct: 540 TYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM 599

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALL--QTLERDKYELNIEVYSLVIDGLCRVG 124
              GI     TY  ++  +    GR   M  L  Q L++D    +  +Y++++D   + G
Sbjct: 600 WKCGIKPSPRTYR-MLFSSLGGAGRVHEMENLYQQMLDKDVVPCS-GIYNIMVDAYAKCG 657

Query: 125 RWEEARKKLDQLSEKGLVPGVVT 147
              +      ++S+KG+  G  T
Sbjct: 658 EESKVEALRKEMSDKGIAVGDYT 680



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKGMIM 162
           D +  N  V + V+      G  +EA   L ++   G   P   +YN++I GL K G   
Sbjct: 151 DTFTWNKAVQACVV-----AGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDC 205

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           +A KL  +M EK   P+  ++NT+I G + K +
Sbjct: 206 DAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGD 238


>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 176

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
           KGI +    +S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G   
Sbjct: 1   KGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGNVE 59

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ LL  +  + ++ ++  +S+V++GLC+ GR EEA          GL    + Y+ LI
Sbjct: 60  DAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLI 119

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL K G I EA++L  +M EKGC  DS  +N +I  F    + D A +  K+
Sbjct: 120 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKR 172



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 9/170 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 8   HAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHR 67

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VT++ ++ +   K GR   A+   QT + +   +N   YS +IDGL + G
Sbjct: 68  MIDEGFKPDVVTFSVVV-NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAG 126

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           R +EA +  +++SEKG       YN LI+   K G + EA  L  +M+E+
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEEE 176



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   + + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 68  MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERD 104
           + EA  LF++M  +G T +   YN LI D + K G+   AM L + +E +
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALI-DAFTKHGKVDEAMTLFKRMEEE 176


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTFNRLKEA 59
            K N + +   I+G+CKI   + A +  + L        +V  Y+ +I G C   +L  A
Sbjct: 174 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 233

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
             L  +MV QG+     TY  LI  +  K G F  A  L+  ++++ +  NI  Y+ VID
Sbjct: 234 EMLLVRMVEQGLKPNTNTYTTLIGGHC-KGGSFDRAFELMNKMKQEGFLPNIYTYNAVID 292

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+ G+ +EA K L   + +GL    +TY ILI   CK+G I  A  L  +M E GC P
Sbjct: 293 GFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 352

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++ ++I  +  + + + +  F  K
Sbjct: 353 DIEAYTSLISTYCQQRQMEESQKFFDK 379



 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + EQ  K N + Y   I G CK    D A        ++G   +++ Y+++I+G C   +
Sbjct: 240 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 299

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA ++     +QG+  + +TY  LI ++  KQG  + A+ L   +  +    +IE Y+
Sbjct: 300 IQEAYKVLRMATSQGLKFDKITYTILITEHC-KQGHITYALDLFDRMVENGCCPDIEAYT 358

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C+  + EE++K  D+    GL+P   TY  +I G CK G    A ++  +M + 
Sbjct: 359 SLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQN 418

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
           GCF DS ++  +I G   ++  + A + 
Sbjct: 419 GCFADSITYGALISGLCKESRLEEAKAL 446



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 24  KIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           K+ E+D+ +    + G  LD    + ++  LC   R K+  E F +M+  G    +V Y 
Sbjct: 88  KVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYT 147

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-RKKLDQLSE 138
             I    +++    A  +L+ +     + N+  ++ +IDGLC++G  E A R  L  +  
Sbjct: 148 AWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKS 207

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
               P V TY ++I G C++G +  A+ LLV+M E+G  P++ ++ T+I G       DR
Sbjct: 208 SSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDR 267

Query: 199 ASSFLKK 205
           A   + K
Sbjct: 268 AFELMNK 274



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 17/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ F  N + Y   I+G CK  +I  A K       +G+  D   Y+ LI   C    
Sbjct: 275 MKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 334

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNI 110
           +  A++LFD+MV  G   ++  Y  LI         E+  +F    L+  L   K     
Sbjct: 335 ITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK----- 389

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           + Y+ +I G C+VGR   A +  +++ + G     +TY  LI+GLCK+  + EA  L   
Sbjct: 390 QTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEG 449

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M +K   P   +  T+   +  + +T  A S L +
Sbjct: 450 MLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDR 484



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVI 117
           A ++FD M   G++     +  L+     ++G+   + ALL  + R  + L+    ++V+
Sbjct: 57  ARKVFDGMTRAGVSPMNRGFGALVVVCC-REGKVEEVDALLAAMWRYGFSLDNATCTVVV 115

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC  GR+++  +   ++ E G  P VV Y   I+GLCK+  + +A  +L +M  +G  
Sbjct: 116 RSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK 175

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P+  +  T+I G      T+RA
Sbjct: 176 PNVYTHTTLIDGLCKIGWTERA 197



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 13  HVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y   I G CK+       R  +  ++ G   D   Y +LI+GLC  +RL+EA  L++ 
Sbjct: 390 QTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEG 449

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ + +    VT   L  +   ++    A+++L  L++ +    +    +V+  L  +G 
Sbjct: 450 MLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVVVRKLSALGD 506

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILIN 153
            + A   L ++ ++       TY   IN
Sbjct: 507 VDAASLFLKKVLDEDYAVDHATYTGFIN 534



 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 60/152 (39%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL EA ++  +M + G+   + T N ++    E      A  +   + R         +
Sbjct: 17  GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGF 76

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             ++   CR G+ EE    L  +   G      T  +++  LC+KG   +  +   +M E
Sbjct: 77  GALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLE 136

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++   I G   +    +A   L++
Sbjct: 137 TGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEE 168


>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A    K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKR 184



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIBEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N + +GI ++G+ K      A K       +GI  +   Y+ LI+GLC      +A +LF
Sbjct: 197 NLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLF 256

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
            +M   G   + V +N L+ D + K GR   A  LL+  E+D + L +  YS +IDGL R
Sbjct: 257 YEMQTSGNYPDSVAHNALL-DGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFR 315

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
             R+ +A +    + +K + P ++ Y ILI GL K G I +A KLL  M  KG  PD+  
Sbjct: 316 ARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYC 375

Query: 183 FNTVIQGF 190
           +N VI+  
Sbjct: 376 YNAVIKAL 383



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 12/212 (5%)

Query: 5   EQRFKGNFH---VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           E +  GN+     +   ++G CK+  +  A        K G  L +  YSSLI+GL    
Sbjct: 258 EMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRAR 317

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           R  +A EL+  M+ + I  +++ Y  LI     K G+   A+ LL ++       +   Y
Sbjct: 318 RYTQAFELYANMLKKNIKPDIILYTILIQ-GLSKAGKIEDALKLLSSMPSKGISPDTYCY 376

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + VI  LC  G  EE R    ++SE    P   T+ ILI  +C+ G++ EA+++  ++++
Sbjct: 377 NAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEK 436

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC P   +FN +I G     E   A   L K
Sbjct: 437 SGCSPSVATFNALIDGLCKSGELKEARLLLHK 468



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+T +    N   Y I I+G+C+    D A K        G   D   +++L++G C   
Sbjct: 223 DMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLG 282

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R+ EA EL       G    L  Y+ LI   +  +    A  L   + +   + +I +Y+
Sbjct: 283 RMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYT 342

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           ++I GL + G+ E+A K L  +  KG+ P    YN +I  LC +G++ E   L ++M E 
Sbjct: 343 ILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSET 402

Query: 175 GCFPDSTSFNTVI 187
             FPD+ +   +I
Sbjct: 403 ESFPDACTHTILI 415



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS- 93
           G+ +D + +  LI+        ++AVE F +M       ++ TYN ++     ++  F  
Sbjct: 122 GVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFML 181

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A A+   + +     N+  + +++DGL + GR  +A+K  D ++ +G+ P  VTY ILI+
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLC++G   +A KL  +M+  G +PDS + N ++ GF
Sbjct: 242 GLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGF 278



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 46/235 (19%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ ++  K +  +Y I I G+ K  +I+ A+K       KGI  D + Y+++I  LC   
Sbjct: 328 NMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRG 387

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L+E   L  +M       +  T+  LI           A  +   +E+     ++  ++
Sbjct: 388 LLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFN 447

Query: 115 LVIDGLCRVGRWEEAR---------------------------------------KKLDQ 135
            +IDGLC+ G  +EAR                                       + L  
Sbjct: 448 ALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAH 507

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
            ++ G  P +V+YN+LING C+ G I  A KLL  ++ KG  PDS ++NT+I G 
Sbjct: 508 FADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGL 562



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 51/247 (20%)

Query: 8   FKGNFHVYGIR-----INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
           F+ +  V G+R     I+G+ + R    A       +KK I  D+ +Y+ LI GL    +
Sbjct: 294 FEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGK 353

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++A++L   M ++GI+ +   YN +I     +       +L   +   +   +   +++
Sbjct: 354 IEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTI 413

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK--- 172
           +I  +CR G   EA +   ++ + G  P V T+N LI+GLCK G + EA  LL +M+   
Sbjct: 414 LICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGR 473

Query: 173 ------------------------------------EKGCFPDSTSFNTVIQGFLVKNET 196
                                               + G  PD  S+N +I GF    + 
Sbjct: 474 PASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDI 533

Query: 197 DRASSFL 203
           D A   L
Sbjct: 534 DGALKLL 540



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 14  VYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I I  MC+   +RE +       K G    V  +++LI+GLC    LKEA  L  KM
Sbjct: 410 THTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469

Query: 67  VAQGITAELV-----TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
              G  A L      + N       E      A   L          +I  Y+++I+G C
Sbjct: 470 EV-GRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFC 528

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           R G  + A K L+ L  KGL P  VTYN LINGL + G   EA KL 
Sbjct: 529 RAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 39  DVFVYSSLINGLC---TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-A 94
           DVF Y+ ++  +     F  L  AV  +++M+    +  L T+  L+ D   K+GR S A
Sbjct: 161 DVFTYNVILRVMMREEVFFMLAFAV--YNEMLKCNCSPNLYTFGILM-DGLYKKGRTSDA 217

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
             +   +       N   Y+++I GLC+ G  ++ARK   ++   G  P  V +N L++G
Sbjct: 218 QKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDG 277

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA----SSFLKKNM 207
            CK G ++EA +LL   ++ G       ++++I G        +A    ++ LKKN+
Sbjct: 278 FCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNI 334



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y + ING C+  +ID A+K       KG+  D   Y++LINGL    R +EA +LF    
Sbjct: 520 YNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF--YA 577

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
                     Y  L+  +  K+    A  L     +    L+ E  +  I+   + G  E
Sbjct: 578 KDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETAN-EIEQCFKEGETE 636

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A ++L +L  +     +  Y I + GLC+ G   EA  +   ++EK       S   +I
Sbjct: 637 RALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLI 696

Query: 188 QGFLVKNETDRA 199
            G   + + D A
Sbjct: 697 HGLCKREQLDAA 708



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 40/175 (22%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R++      G   D+  Y+ LING C    +  A++L + +  +G++ + VTYN L    
Sbjct: 503 RDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTL---- 558

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                                          I+GL RVGR EEA K      +    P V
Sbjct: 559 -------------------------------INGLHRVGREEEAFKLFYAKDDFRHSPAV 587

Query: 146 VTYNILINGLCKKGMIMEADKLLVQ-MKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
             Y  L+   C+K  ++ A  L ++ +K+  C  D T+ N + Q F  + ET+RA
Sbjct: 588 --YRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETA-NEIEQCF-KEGETERA 638


>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A    K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIBEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++GMCK  +++SA        K G+  DV+ Y + + GLC   R+++AVE+F++M  +G+
Sbjct: 286 MSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGV 345

Query: 72  TAELVTYNPLIHDNWEKQGRFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               V +  LI D   K+G  +A + L + +     + ++  Y+ + +GLCRV   + A 
Sbjct: 346 NPNTVVFTTLI-DAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAAN 404

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             ++++   GL P  VTY  LI+G CK+G +  A ++  +M ++G   D  ++ T+I G 
Sbjct: 405 DIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGL 464



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + YG  + G+CK   I  A++       +G+  +  V+++LI+  C    +   +EL 
Sbjct: 313 DVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELH 372

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M  +GI  +LV YN L +     +   +A  +++ +  +  + +   Y+ +IDG C+ 
Sbjct: 373 REMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKE 432

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  + A +   ++S++G+    VTY  LI+GL K G  ++++++L +M E G  PD+T++
Sbjct: 433 GELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTY 492

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             VI  F   ++       LK+
Sbjct: 493 TMVIDAFCKNSDVKTGFKLLKE 514



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++ E+    N  V+   I+  CK   + + ++       +GI  D+  Y++L NGLC   
Sbjct: 339 EMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVR 398

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
            LK A ++ ++M   G+  + VTY  LI D + K+G    AM + Q +  +   L+   Y
Sbjct: 399 DLKAANDIVEEMRNNGLKPDKVTYTTLI-DGFCKEGELDMAMEMKQEMSDEGVALDEVTY 457

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I GL + GR  ++ + L ++ E GL P   TY ++I+  CK   +    KLL +M+ 
Sbjct: 458 TTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQN 517

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           KG  P   ++N V+ GF +  +   A   L
Sbjct: 518 KGRKPGVVTYNVVMNGFCILGQMKNADMLL 547



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK  E+D A++       +G+ LD   Y++LI+GL    R  ++  +  +M
Sbjct: 421 TYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEM 480

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +  G+  +  TY  +I    +     +   LL+ ++    +  +  Y++V++G C +G+ 
Sbjct: 481 MEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQM 540

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           + A   L+ +   G+ P  +TYNIL++G CK G + +A++L      KG   D   + ++
Sbjct: 541 KNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL---KSAKGMVSDFGLYTSL 597

Query: 187 IQGFLVKNET 196
           I  F+ K  T
Sbjct: 598 INEFVKKKST 607



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 17  IRINGMCKIREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           IR   +   R + D  +++G+   V  +++L++G+C  + L  A  L   M   G+  ++
Sbjct: 255 IRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDV 314

Query: 76  VTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
            TY   +     K GR   A+ + + +       N  V++ +ID  C+ G      +   
Sbjct: 315 YTYGAFMQ-GLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHR 373

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           +++ +G+   +V YN L NGLC+   +  A+ ++ +M+  G  PD  ++ T+I GF  + 
Sbjct: 374 EMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEG 433

Query: 195 ETDRA 199
           E D A
Sbjct: 434 ELDMA 438



 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 79/159 (49%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  +   ++ L+  +    +L  A  +FD+M+ +G+   +VT+N L+    +    
Sbjct: 236 LDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDL 295

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
            SA AL   + +     ++  Y   + GLC+ GR ++A +  +++ E+G+ P  V +  L
Sbjct: 296 NSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTL 355

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I+  CK+G +    +L  +M  +G   D  ++N +  G 
Sbjct: 356 IDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGL 394



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G+ + +  +S L+N L +   + EA   + +++  G+  E   +N L+ D        
Sbjct: 205 RRGVRVPLPAWSDLMNRLPS---VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLA 261

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           SA  +   + R      +  ++ ++ G+C+      A      +++ G+ P V TY   +
Sbjct: 262 SARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFM 321

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            GLCK G I +A ++  +M+E+G  P++  F T+I  
Sbjct: 322 QGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDA 358


>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Brachypodium distachyon]
          Length = 461

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 14/210 (6%)

Query: 1   FDLTEQ-----RFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLI 47
           FDL E        + N HVY   + G+C+  + D+A++          + LD  +Y++L+
Sbjct: 204 FDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADNAVRLKEEMAGNAELGLDSAIYATLV 263

Query: 48  NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKY 106
             L    R  E V L ++M  +GI  + V +N +I    E +    +A  +L  +++   
Sbjct: 264 RALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDDMQKSGC 323

Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
           + +   Y+ ++ GLC++GRW +A + ++ +  +G  P VVTY +L +G+C  G   EA++
Sbjct: 324 KADTVSYNTLVAGLCKLGRWRDANELVEDMPRRGCSPDVVTYRMLFDGMCAVGEFHEANQ 383

Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
           +L +M  KG  P        +QG  ++ + 
Sbjct: 384 VLDEMVFKGFAPSKDGVKRFVQGIEIEGDV 413



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 42/192 (21%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           D   Y+ L+        +  A  LFD+MV + I   +VT+  L+   +   GR   A  L
Sbjct: 148 DACTYNILMRAAAASGSVDHARLLFDEMVQRRIAPTVVTFGTLVA-AFCSSGRLDEAFDL 206

Query: 98  LQTLERDKYEL--NIEVYSLVIDGLC---------------------------------- 121
            + + R +Y +  N  VY+ ++ GLC                                  
Sbjct: 207 KEAMAR-QYNVRPNAHVYASLMKGLCQSGDADNAVRLKEEMAGNAELGLDSAIYATLVRA 265

Query: 122 --RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFP 178
             RVGR  E    L+++  +G+    V +N +I G C+  M ++A   +L  M++ GC  
Sbjct: 266 LFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDDMQKSGCKA 325

Query: 179 DSTSFNTVIQGF 190
           D+ S+NT++ G 
Sbjct: 326 DTVSYNTLVAGL 337


>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF- 92
           KGI +    +S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G   
Sbjct: 1   KGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGNVE 59

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A+ LL  +  + ++ ++  +S+V++GLC+ GR EEA          GL    + Y+ LI
Sbjct: 60  DAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLI 119

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           +GL K G I EA++L  +M EKGC  DS  +N +I  F    + D A +  K+
Sbjct: 120 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKR 172



 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 10/173 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 8   HAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHR 67

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VT++ ++ +   K GR   A+   QT + +   +N   YS +IDGL + G
Sbjct: 68  MIDEGFKPDVVTFSVVV-NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAG 126

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGC 176
           R +EA +  +++SEKG       YN LI+   K G + EA  L  +M +E+GC
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEEEEGC 179



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   + + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 68  MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D + K G+   AM L + +E ++
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALI-DAFTKHGKVDEAMTLFKRMEEEE 177


>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +    +S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGNV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  +S+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I  F    + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKR 182



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 12/184 (6%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           H + + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VT++ ++ +   K GR   A+   QT + +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTFSVVV-NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+   K G + EA  L  +M +E+GC  D T +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEEEEGC--DQTVY 194

Query: 184 NTVI 187
              I
Sbjct: 195 TYTI 198



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++    +SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +F+ V+ G       + A  + +
Sbjct: 62  YAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQ 111



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   + + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK 105
           + EA  LF++M  +G T +   YN LI D + K G+   AM L + +E ++
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DAFTKHGKVDEAMTLFKRMEEEE 187



 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  NVEDAIRLLHR 77


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTFNRLKEA 59
            K N + +   I+G+CKI   + A +  + L        +V  Y+ +I G C   +L  A
Sbjct: 282 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 341

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
             L  +MV QG+     TY  LI  +  K G F  A  L+  ++++ +  NI  Y+ VID
Sbjct: 342 EMLLVRMVEQGLKPNTNTYTTLIGGHC-KGGSFDRAFELMNKMKQEGFLPNIYTYNAVID 400

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+ G+ +EA K L   + +GL    +TY ILI   CK+G I  A  L  +M E GC P
Sbjct: 401 GFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 460

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++ ++I  +  + + + +  F  K
Sbjct: 461 DIEAYTSLISTYCQQRQMEESQKFFDK 487



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + EQ  K N + Y   I G CK    D A        ++G   +++ Y+++I+G C   +
Sbjct: 348 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 407

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA ++     +QG+  + +TY  LI ++  KQG  + A+ L   +  +    +IE Y+
Sbjct: 408 IQEAYKVLRMATSQGLKFDKITYTILITEHC-KQGHITYALDLFDRMVENGCCPDIEAYT 466

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C+  + EE++K  D+    GL+P   TY  +I G CK G    A ++  +M + 
Sbjct: 467 SLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQN 526

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSF 202
           GCF DS ++  +I G   ++  + A + 
Sbjct: 527 GCFADSITYGALISGLCKESRLEEAKAL 554



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 17/215 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ F  N + Y   I+G CK  +I  A K       +G+  D   Y+ LI   C    
Sbjct: 383 MKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 442

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNI 110
           +  A++LFD+MV  G   ++  Y  LI         E+  +F    L+  L   K     
Sbjct: 443 ITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK----- 497

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
           + Y+ +I G C+VGR   A +  +++ + G     +TY  LI+GLCK+  + EA  L   
Sbjct: 498 QTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEG 557

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M +K   P   +  T+   +  + +T  A S L +
Sbjct: 558 MLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDR 592



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   + G+C D   + +L+   C   +++E   L   M   G + +  T   ++    EK
Sbjct: 170 DGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEK 229

Query: 89  QGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GRF  ++   + +       N+  Y+  IDGLC+    ++A   L+++  +GL P V T
Sbjct: 230 -GRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 288

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFL 203
           +  LI+GLCK G    A +L +++ +   + P+  ++  +I G+  + +  RA   L
Sbjct: 289 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLL 345



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVI 117
           A ++FD M   G+  +  ++  L+     ++G+   + ALL  + R  + L+    ++V+
Sbjct: 165 ARKVFDGMTRAGVCPDERSFRALVVVCC-REGKVEEVDALLAAMWRYGFSLDNATCTVVV 223

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC  GR+++  +   ++ E G  P VV Y   I+GLCK+  + +A  +L +M  +G  
Sbjct: 224 RSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK 283

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P+  +  T+I G      T+RA
Sbjct: 284 PNVYTHTTLIDGLCKIGWTERA 305



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 13  HVYGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
             Y   I G CK+       R  +  ++ G   D   Y +LI+GLC  +RL+EA  L++ 
Sbjct: 498 QTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEG 557

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
           M+ + +    VT   L  +   ++    A+++L  L++ +    +    +V+  L  +G 
Sbjct: 558 MLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVVVRKLSALGD 614

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILIN 153
            + A   L ++ ++       TY   IN
Sbjct: 615 VDAASLFLKKVLDEDYAVDHATYTGFIN 642



 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 61/152 (40%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL EA ++  +M + G+   + T N ++    E      A  +   + R     +   +
Sbjct: 125 GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSF 184

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             ++   CR G+ EE    L  +   G      T  +++  LC+KG   +  +   +M E
Sbjct: 185 RALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLE 244

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++   I G   +    +A   L++
Sbjct: 245 TGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEE 276


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++  + F  +  +Y + ++G+CK+  ++ A       +  G+  D   Y+S+I+      
Sbjct: 504 EMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENG 563

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           RL++  E+F +M+++G+T  +VTY  LIH +  K     A      ++      N+  Y+
Sbjct: 564 RLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYN 623

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC+V R ++A     ++ EKG+ P   +Y ILIN  C  G   EA  L  QM ++
Sbjct: 624 SLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDR 683

Query: 175 GCFPDSTSFNTVIQ 188
           G  PDS + + +++
Sbjct: 684 GVQPDSCTHSALLK 697



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+C+  E++ A       I +GI  D+  Y+ L+NG C    L  A E FD+M
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+  +   Y   I    +      A +L + +    +  ++ +Y++V+DGLC++G  
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA + L ++   G++P  VTY  +I+   + G + +  ++  +M  KG  P   ++  +
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590

Query: 187 IQGFLVKNETDRA 199
           I G   K   +RA
Sbjct: 591 IHGHAGKGRLERA 603



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           +  + KG    V  Y+S I GLC   R+ +A++    M+A  +  ++V+YN LI+     
Sbjct: 328 EEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRL 387

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
                A  L   L        I  Y+ ++DGLCR G  E A++   ++  +G+ P +VTY
Sbjct: 388 GNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            IL+NG CK G +  A +   +M  +G   DS ++ T I G L   +T RA S 
Sbjct: 448 TILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 501



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 12/198 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L+E + +G   N   Y + ING+ K  E + A       +K G+ +  + Y+ LI G   
Sbjct: 257 LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFN 316

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              L EA+ L ++MV +G +  + TYN  I+    K GR S AM  L  +  +    ++ 
Sbjct: 317 KGMLAEALSLQEEMVLKGASPTVATYNSFIY-GLCKLGRMSDAMQQLSDMLANNLLPDVV 375

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I G CR+G   +A    D+L    L P +VTYN L++GLC++G +  A +L V+M
Sbjct: 376 SYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEM 435

Query: 172 KEKGCFPDSTSFNTVIQG 189
             +G  PD  ++  ++ G
Sbjct: 436 INEGIAPDIVTYTILVNG 453



 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   +   Y+ LINGL      ++A  L  +M+  G+     TYNPLI+  + K    
Sbjct: 262 RRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLA 321

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A++L + +        +  Y+  I GLC++GR  +A ++L  +    L+P VV+YN LI
Sbjct: 322 EALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLI 381

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G C+ G +M+A  L  +++    FP   ++NT++ G   + E + A
Sbjct: 382 YGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVA 428



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 81/152 (53%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +  Y++L++GLC    L+ A +L  +M+ +GI  ++VTY  L++ + +      A     
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +  +  EL+   Y+  I G  ++G    A    +++  KG  P ++ YN++++GLCK G
Sbjct: 469 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLG 528

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + EA +LL +M   G  PD  ++ ++I   L
Sbjct: 529 NLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI   +  Y++L++  C   ++++ ++L  +M  +G     VTYN LI +   K+G F  
Sbjct: 229 GIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI-NGLSKKGEFEQ 287

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L+  + +   +++   Y+ +I G    G   EA    +++  KG  P V TYN  I 
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLCK G + +A + L  M      PD  S+NT+I G+
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGY 384



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 76/147 (51%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++ + +FDKM+   ++ ++   N ++    +K     A+ + +T+     +  I  Y+ 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D  C+ G+ ++    L ++  +G  P  VTYN+LINGL KKG   +A  L+ +M + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
               + ++N +I G+  K     A S 
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSL 326



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E G+ P +VTYN L++  CK G + +   LL +M+ +GC P+  ++N +I G   K E
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 196 TDRASSFL 203
            ++A   +
Sbjct: 285 FEQAKGLI 292


>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g09900-like [Glycine max]
          Length = 395

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
           DV   + LI+  C  + + +A++L  +M+++G    +VTYN LI      +GR   A+  
Sbjct: 30  DVVTCTELIDAACKESGVGQAMKLLIEMMSKGCKPNVVTYNVLIKGICN-EGRLDEAIRF 88

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           L+ L     +L++  Y++++  LC  G+W +A K L  +   G  P VVT+N LIN LC 
Sbjct: 89  LKNLPSYSIQLDVISYTIILHSLCSGGKWMDAMKLLASMLRNGFSPNVVTFNTLINFLCL 148

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           KG++ +A  +L  M + GC P+  S+N +I+GF  +   DR   +
Sbjct: 149 KGLLGKALNVLEMMPKHGCTPNFRSYNPLIEGFCNEKSADRTIEY 193



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 8/198 (4%)

Query: 1   FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
            ++  +  K N   Y + I G+C    +D AI+         I LDV  Y+ +++ LC+ 
Sbjct: 55  IEMMSKGCKPNVVTYNVLIKGICNEGRLDEAIRFLKNLPSYSIQLDVISYTIILHSLCSG 114

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            +  +A++L   M+  G +  +VT+N LI+    K     A+ +L+ + +     N   Y
Sbjct: 115 GKWMDAMKLLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSY 174

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+G C     +   +    +  +G     VTYNIL+  LCK G + +A ++L Q+  
Sbjct: 175 NPLIEGFCNEKSADRTIEYSRIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQLSL 234

Query: 174 KGCFPDSTSFNTVIQGFL 191
            GC P   ++  VI G L
Sbjct: 235 NGCSPLLITY-IVIDGLL 251



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           NF  Y   I G C  +  D  I+       +G  LD   Y+ L+  LC   ++ +A+E+ 
Sbjct: 170 NFRSYNPLIEGFCNEKSADRTIEYSRIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEIL 229

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +++   G +  L+TY  ++ D   K G+   + +L   E    + N+  ++ V  GL R 
Sbjct: 230 NQLSLNGCSPLLITY--IVIDGLLKVGKTVHVVVLFE-EIKALKPNLITFTSVEGGLSRK 286

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G+  EA +    L   G+   ++       GLCK      A   L  M E GC P   ++
Sbjct: 287 GKVHEAIQNFRFLEGLGIRXSIIM------GLCKTQQTSRAIDFLAYMVENGCKPTEATY 340

Query: 184 NTVIQGFLVKNETDRASSF 202
           N +++G   +   + AS  
Sbjct: 341 NILVKGITCEGLPEEASKL 359


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG  ++ ++D   +        G+  DV+ YS LINGLC  +++ +A ELFD+M+
Sbjct: 174 YNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 233

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+    VT+  LI D   K GR   AM + + +       ++  Y+ +I GLC+ G  
Sbjct: 234 VKGLVPNGVTFTTLI-DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-----------MIME------------ 163
           ++A   +D++S KGL P  +TY  LI+G CK+G           MI E            
Sbjct: 293 KQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTAL 352

Query: 164 ------------ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                       A+K+L +M   G  PD+ ++  +I  F  K +  + S  LK+
Sbjct: 353 XSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 406



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+   V  Y++L+NG     
Sbjct: 126 EILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 185

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 186 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFT 245

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L P ++TYN LI GLCKKG + +A  L+ +M  K
Sbjct: 246 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 305

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G   + + D A    K+
Sbjct: 306 GLKPDKITYTTLIDGCCKEGDLDSAFEHRKR 336



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A++       + +  D+  Y++LI GLC    LK+A  L D+M  +G+
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 307

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +TY  LI D   K+G   SA    + + ++   L+   Y+ +  GLC+ GR  +A 
Sbjct: 308 KPDKITYTTLI-DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAE 366

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           K L ++   GL P   TY ++IN  CKKG + +  KLL +M+  G  P
Sbjct: 367 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 414



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +             T   ++    + +         
Sbjct: 65  DJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV+YN L+NG  + 
Sbjct: 125 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 184

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G + E  +L   M   G  PD  +++ +I G   +++ D A+   
Sbjct: 185 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELF 229



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITA-----------ELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A           +J  ++ LI  
Sbjct: 16  YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYVFSGLITA 75

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V++ L ++  ++      +++ E G    
Sbjct: 76  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 135

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK G I  A  +   + + G  P   S+NT++ G++   + D  
Sbjct: 136 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 190


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            YG  ++G+ KI  +D A          G+ L+V +YSSLI+G     R+ EA  + +++
Sbjct: 659 TYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEEL 718

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+T    T+N L+    + +    A    Q ++  K   N   YS++I+GLC + ++
Sbjct: 719 MQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKF 778

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            +A     ++ ++GL P  +TY  +I GL K G +MEA  L  + K  G  PDS  +N +
Sbjct: 779 NKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAM 838

Query: 187 IQGFLVKNET 196
           I+G    N+ 
Sbjct: 839 IEGLSSANKA 848



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKI---REIDSAI----KKGICLDVFVYSSLINGLCTFN 54
           ++  Q    +   Y I I+G+ K    RE         ++G+ LDV  Y+++I+G C   
Sbjct: 577 EIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSG 636

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
           ++ +A +L ++M  +G+   +VTY  ++ D   K  R   A  L +  +    +LN+ +Y
Sbjct: 637 KVDKAYQLLEEMKTKGLQPTVVTYGSVV-DGLAKIDRLDEAYMLFEEAKSIGVDLNVVIY 695

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           S +IDG  +VGR +EA   L++L +KGL P   T+N L++ L K   I EA      MK 
Sbjct: 696 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             C P++ +++ +I G  +  + ++A  F ++
Sbjct: 756 LKCSPNAMTYSIMINGLCMIRKFNKAFVFWQE 787



 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 8/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I  +CK R +D A++    LD       V+ Y+++I G  +  +  EA  L ++ 
Sbjct: 310 TYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             +G    ++ YN ++     ++G+      +    R     N+  Y+++ID LC+ G  
Sbjct: 370 KRKGCIPSVIAYNCIL-TCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGEL 428

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A K  D + E GL P ++T NI+I+ LCK   + EA  + + +  K C PDS +F ++
Sbjct: 429 EAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSL 488

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G   +   D A S  +K
Sbjct: 489 IDGLGRRGRVDDAYSLYEK 507



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIKKGICLDVFV-------YSSLINGLCTFNRLKEAVELF 63
           N     I I+ +CK +++D A    + LD  V       + SLI+GL    R+ +A  L+
Sbjct: 446 NIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLY 505

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           +KM+       +V Y  LI + ++   +     + + +       ++ + +  +D + + 
Sbjct: 506 EKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKA 565

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+ R   +++  +GLVP V +Y+ILI+GL K G   E  KL  +MKE+G   D  ++
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NTVI GF    + D+A   L++
Sbjct: 626 NTVIDGFCKSGKVDKAYQLLEE 647



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
            Y++LI  L   NR    + LF +M   G  A +  +  L+   + ++GR  +A++LL  
Sbjct: 205 AYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVR-VFAREGRIDAALSLLDE 263

Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
           ++ + +  ++ +Y++ ID   +VG+ + A K   ++  +GLVP  VTY  LI  LCK   
Sbjct: 264 MKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARR 323

Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
           + EA +L  ++      P   ++NT+I G+    + D A S L++ 
Sbjct: 324 LDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V VY+SLI       R ++  +++ +MV +G + +L+  N  +   ++        AL 
Sbjct: 516 NVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALF 575

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + ++      ++  YS++I GL + G   E  K   ++ E+GL   V+ YN +I+G CK 
Sbjct: 576 EEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKS 635

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G + +A +LL +MK KG  P   ++ +V+ G    +  D A
Sbjct: 636 GKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEA 676



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 91/176 (51%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           + +G   D+ + +S ++ +     +++   LF+++ AQG+  ++ +Y+ LIH   +    
Sbjct: 544 VHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFS 603

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                L   ++     L++  Y+ VIDG C+ G+ ++A + L+++  KGL P VVTY  +
Sbjct: 604 RETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSV 663

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           ++GL K   + EA  L  + K  G   +   ++++I GF      D A   L++ M
Sbjct: 664 VDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELM 719



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 8/204 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E  ++ N H++   +    +   ID+A+             D+ +Y+  I+      +
Sbjct: 229 MQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGK 288

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +  A + F +M AQG+  + VTY  LI    + +    A+ L + L+ ++    +  Y+ 
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I G    G+++EA   L++   KG +P V+ YN ++  L +KG + EA ++  +M++  
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA 408

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
             P+ T++N +I       E + A
Sbjct: 409 A-PNLTTYNILIDMLCKAGELEAA 431



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 7   RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
           +F+  F  Y   I  +      D  +       + G   +V ++++L+       R+  A
Sbjct: 198 KFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAA 257

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
           + L D+M +   TA+LV YN  I D + K G+   A      ++      +   Y+ +I 
Sbjct: 258 LSLLDEMKSNSFTADLVLYNVCI-DCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIG 316

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            LC+  R +EA +  ++L     VP V  YN +I G    G   EA  LL + K KGC P
Sbjct: 317 VLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIP 376

Query: 179 DSTSFNTVIQGFLVKNETDRA 199
              ++N ++     K + + A
Sbjct: 377 SVIAYNCILTCLGRKGKVEEA 397



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 81/178 (45%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I   +++    ++  Y+ LI+ LC    L+ A+++ D M   G+   ++T N +I    +
Sbjct: 400 IHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCK 459

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            Q    A ++   L+      +   +  +IDGL R GR ++A    +++ +   +P VV 
Sbjct: 460 AQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVV 519

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           Y  LI    K G   +  K+  +M  +GC PD    N+ +       E ++  +  ++
Sbjct: 520 YTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEE 577



 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING+C IR+ + A        K+G+  +   Y+++I GL     + EA  LF
Sbjct: 761 NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLF 820

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
           D+  A G   +   YN +I           A  + +        +N +   +++D L + 
Sbjct: 821 DRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKA 880

Query: 124 GRWEEA 129
              E+A
Sbjct: 881 DCLEQA 886


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 110/202 (54%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  ++D A       + KG+  +   +++LI+G C   R+  A+E++
Sbjct: 186 DVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 245

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M++Q +  +L+TYN LI+   +K     A  L+  + R   + +   Y+ +IDG C+ 
Sbjct: 246 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKE 305

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G    A +   +L ++ +    V Y  LI+GLC++G  ++A+K+L +M   G  PD+ ++
Sbjct: 306 GVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTY 365

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +  + S  LK+
Sbjct: 366 TMIINEFCKKGDVWKGSKLLKE 387



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 9/179 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A++       + +  D+  Y++LI GLC    LK+A +L D M  +G+
Sbjct: 229 IDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGL 288

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +TY  LI D   K+G   SA    + L ++   L+  VY+ +I GLC+ GR  +A 
Sbjct: 289 KPDKITYTTLI-DGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAE 347

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           K L ++   GL P   TY ++IN  CKKG + +  KLL +M+  G  P   ++N ++ G
Sbjct: 348 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+      Y++L+NG     
Sbjct: 107 EILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLG 166

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 167 VLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFT 226

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L+P ++TYN LI GLCKKG + +A  L+  M  K
Sbjct: 227 TLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRK 286

Query: 175 GCFPDSTSFNTVIQG 189
           G  PD  ++ T+I G
Sbjct: 287 GLKPDKITYTTLIDG 301



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG---- 90
           G    ++ ++ L++  C    ++ A  +FD +   G+    V+YN L+ + + + G    
Sbjct: 112 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLM-NGYIRLGVLDE 170

Query: 91  --RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
             R  +  L   ++ D Y      YS++I+GLC+  + ++A +  D++  KGLVP  VT+
Sbjct: 171 GFRLKSAMLASGVQPDVY-----TYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTF 225

Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             LI+G CK G +  A ++  QM  +   PD  ++NT+I G   K +  +A   +
Sbjct: 226 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLI 280



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 73/161 (45%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +       +     T   ++    + +         
Sbjct: 46  DIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGFY 105

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P  V+YN L+NG  + 
Sbjct: 106 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRL 165

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G++ E  +L   M   G  PD  +++ +I G   +++ D A
Sbjct: 166 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 206


>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+ +CK   +D A+       KKGI L+++ Y+S+INGLC    L +A  LFD + 
Sbjct: 642 YSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLE 701

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +    +TY  LI    ++     A  L + +    +  N+ VY+ +IDG C+ G  E
Sbjct: 702 KIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNME 761

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  L  + + P   T + LING C KG +  A     + K+K   PD   F  ++
Sbjct: 762 EALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLV 821

Query: 188 QGFLVKNETDRASSFLKK 205
           +G   K   + A   L++
Sbjct: 822 RGLCAKGRMEEARGILRE 839



 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           IR+    I+KGI  D   Y+ LI+G      +++A+   +KM   G+   LVTY  ++  
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLG 237

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +K     A  L + +E    E++  +Y  +IDG C  G  +     L+ + ++G+ P 
Sbjct: 238 FCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPS 297

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +VTYN +INGLCK G   EAD++      KG   D+ +F+T++ G++
Sbjct: 298 IVTYNSIINGLCKAGRTSEADEV-----SKGIAGDAVTFSTLLHGYI 339



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQ 99
           FV SS+I+G C  ++ + AV  F+  V   +    +     +     + GR   ++ L+ 
Sbjct: 88  FVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVS 147

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +ER+++  ++  YS  I G  R G   EA +K  ++ EKG+ P  V+Y ILI+G  ++G
Sbjct: 148 WMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREG 207

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            + +A   L +MK+ G  P+  ++  ++ GF  K + D A +  K
Sbjct: 208 YVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK 252



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D+  YS +I+ LC    L +A++L   +  +GI   +  YN +I+    +     A  L
Sbjct: 637 MDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRL 696

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +LE+     +   Y+ +ID LC+ G   +A++  +++  KG  P V  YN LI+G CK
Sbjct: 697 FDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCK 756

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G + EA  LL+ +K +   PD  + + +I G+  K + + A  F 
Sbjct: 757 FGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFF 802



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 48/218 (22%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G C   +ID          K+GI   +  Y+S+INGLC   R  EA E     
Sbjct: 265 MYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE----- 319

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-------------- 112
           V++GI  + VT++ L+H   E++     +   + LE D   +++ +              
Sbjct: 320 VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGAL 379

Query: 113 ---------------------YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
                                Y  +I+G CRV R EEA +  D+   K  +  V  Y  +
Sbjct: 380 EDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEF-RKTSISSVSCYKCM 438

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           I GLC+KGM+  A ++ +++ EKG    S ++ ++I+ 
Sbjct: 439 IYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKA 476



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           GNF V    I+G CKI +   A+         + +  ++   ++L+  L    R++E  +
Sbjct: 86  GNF-VSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSD 144

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV------YSL 115
           L   M  +    ++V Y+  I       G F    L++ + + K  +   +      Y++
Sbjct: 145 LVSWMEREEFVFDVVFYSSWIC------GYFREGVLVEAIRKHKEMIEKGIAPDTVSYTI 198

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  R G  E+A   L+++ + GL P +VTY  ++ G CKKG + EA  L   ++  G
Sbjct: 199 LIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLG 258

Query: 176 CFPDSTSFNTVIQGFLVKNETD 197
              D   + T+I GF  + + D
Sbjct: 259 IEVDEFMYVTLIDGFCTRGDID 280



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 42/204 (20%)

Query: 43  YSSLINGLCTFNRLKEAVELF--DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           + SLI GLC   +  E   L   D +   GI     T++ LIH ++  QG+ S A+ +L+
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIH-SFTSQGKMSRAIEVLE 74

Query: 100 TLERDK--YELNIEVYSLVIDGLCRV---------------------------------- 123
            +  DK  Y     V S VI G C++                                  
Sbjct: 75  LMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 124 --GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             GR  E    +  +  +  V  VV Y+  I G  ++G+++EA +   +M EKG  PD+ 
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTV 194

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           S+  +I GF  +   ++A  FL+K
Sbjct: 195 SYTILIDGFSREGYVEKAIGFLEK 218



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 41/195 (21%)

Query: 15  YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           Y   ING C++  I+ A+      +K     V  Y  +I GLC    +  A+E+F ++  
Sbjct: 401 YCTMINGYCRVSRIEEALEIFDEFRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNE 460

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
           +G+     TY  LI  ++E+QG   A  +L+ + R             I+ L        
Sbjct: 461 KGLELVSGTYTSLIKASFEEQG---AEGVLKFVHR-------------IENL-------- 496

Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
            R+  D +S           N  I  LCK+G  + A ++ ++M+ K     S S+ ++++
Sbjct: 497 GREAFDTIS-----------NSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILK 545

Query: 189 GFLVKNETDRASSFL 203
           G +  ++      FL
Sbjct: 546 GLISDDQKGLGWPFL 560



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-----KGICL--DVFVYSSLINGLCTFNRLKEAV 60
           F  N  VY   I+G CK   ++ A+      K  C+  D F  S+LING C    ++ A+
Sbjct: 740 FNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGAL 799

Query: 61  ELFDKMVAQGITAELVTYNPLIHD------NWEKQGRFSAM----ALLQTLERDKYELNI 110
             F +   + I  + + +  L+          E +G    M    ++L+ + R   E+  
Sbjct: 800 GFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVLELINRVDTEIET 859

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQL 136
           E     I  LC  G  +EA   L+++
Sbjct: 860 ESVESFIISLCEQGSIQEAVTVLNEV 885



 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           V+  L + GR  +A K +    E   V  +V Y+I+I+ LCK+G + +A  L   +K+KG
Sbjct: 610 VLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKG 669

Query: 176 CFPDSTSFNTVIQGF 190
              +  ++N+VI G 
Sbjct: 670 IALNIYAYNSVINGL 684


>gi|341605689|gb|AEK82947.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKXDVVTYSXVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + B A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLFKR 182



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKXDVVTYSXVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G   D  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKXDVVTYSXVVNGLCKNGRVEEALDYFQ 111



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y   +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKXDVVTYSXVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVBEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F  +  +Y + ++G+CK+  ++ A       +  G+  D   Y+S+I+      RL++  
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
           E+F +M+++G+T  +VTY  LIH +  K     A      ++      N+  Y+ +I+GL
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C+V R ++A     ++ EKG+ P   +Y ILIN  C  G   EA  L  QM ++G  PDS
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 181 TSFNTVIQ 188
            + + +++
Sbjct: 690 CTHSALLK 697



 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ++G+C+  E++ A       I +GI  D+  Y+ L+NG C    L  A E FD+M
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           + +G+  +   Y   I    +      A +L + +    +  ++ +Y++V+DGLC++G  
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA + L ++   G++P  VTY  +I+   + G + +  ++  +M  KG  P   ++  +
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590

Query: 187 IQGFLVKNETDRA 199
           I G   K   +RA
Sbjct: 591 IHGHAGKGRLERA 603



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           KG    V  Y+S I GLC   R+ +A++    M+A  +  ++V+YN LI+          
Sbjct: 333 KGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK 392

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L   L        I  Y+ ++DGLCR G  E A++   ++  +G+ P +VTY IL+N
Sbjct: 393 AFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           G CK G +  A +   +M  +G   DS ++ T I G L   +T RA S 
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 501



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 12/198 (6%)

Query: 3   LTEQRFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
           L+E + +G   N   Y + ING+ K  E + A       +K G+ +  + Y+ LI G   
Sbjct: 257 LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFN 316

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
              L EA+ L ++MV +G +  + TYN  I+    K GR S AM  L  +  +    ++ 
Sbjct: 317 KGMLAEALSLQEEMVLKGASPTVATYNSFIY-GLCKLGRMSDAMQQLSDMLANNLLPDVV 375

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
            Y+ +I G CR+G   +A    D+L    L P +VTYN L++GLC++G +  A +L V+M
Sbjct: 376 SYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEM 435

Query: 172 KEKGCFPDSTSFNTVIQG 189
             +G  PD  ++  ++ G
Sbjct: 436 INEGIAPDIVTYTILVNG 453



 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           ++G   +   Y+ LINGL      ++A  L  +M+  G+     TYNPLI+  + K    
Sbjct: 262 RRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLA 321

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A++L + +        +  Y+  I GLC++GR  +A ++L  +    L+P VV+YN LI
Sbjct: 322 EALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLI 381

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
            G C+ G +M+A  L  +++    FP   ++NT++ G   + E + A
Sbjct: 382 YGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVA 428



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 81/152 (53%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
           +  Y++L++GLC    L+ A +L  +M+ +GI  ++VTY  L++ + +      A     
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +  +  EL+   Y+  I G  ++G    A    +++  KG  P ++ YN++++GLCK G
Sbjct: 469 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLG 528

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
            + EA +LL +M   G  PD  ++ ++I   L
Sbjct: 529 NLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-S 93
           GI   +  Y++L++  C   ++++ ++L  +M  +G     VTYN LI +   K+G F  
Sbjct: 229 GIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI-NGLSKKGEFEQ 287

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A  L+  + +   +++   Y+ +I G    G   EA    +++  KG  P V TYN  I 
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           GLCK G + +A + L  M      PD  S+NT+I G+
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGY 384



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 76/147 (51%)

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           +++ + +FDKM+   ++ ++   N ++    +K     A+ + +T+     +  I  Y+ 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           ++D  C+ G+ ++    L ++  +G  P  VTYN+LINGL KKG   +A  L+ +M + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSF 202
               + ++N +I G+  K     A S 
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSL 326



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + E G+ P +VTYN L++  CK G + +   LL +M+ +GC P+  ++N +I G   K E
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 196 TDRASSFL 203
            ++A   +
Sbjct: 285 FEQAKGLI 292


>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+ +CK   +D A+       KKGI L+++ Y+S+INGLC    L +A  LFD + 
Sbjct: 497 YSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLE 556

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +    +TY  LI    ++     A  L + +    +  N+ VY+ +IDG C+ G  E
Sbjct: 557 KIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNME 616

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           EA   L  L  + + P   T + LING C KG +  A     + K+K   PD   F  ++
Sbjct: 617 EALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLV 676

Query: 188 QGFLVKNETDRASSFLKK 205
           +G   K   + A   L++
Sbjct: 677 RGLCAKGRMEEARGILRE 694



 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 25  IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           IR+    I+KGI  D   Y+ LI+G      +++A+   +KM   G+   LVTY  ++  
Sbjct: 178 IRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLG 237

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             +K     A  L + +E    E++  +Y  +IDG C  G  +     L+ + ++G+ P 
Sbjct: 238 FCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPS 297

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           +VTYN +INGLCK G   EAD++      KG   D+ +F+T++ G++
Sbjct: 298 IVTYNSIINGLCKAGRTSEADEV-----SKGIAGDAVTFSTLLHGYI 339



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQ 99
           FV SS+I+G C  ++ + AV  F+  V   +    +     +     + GR   ++ L+ 
Sbjct: 88  FVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVS 147

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            +ER+++  ++  YS  I G  R G   EA +K  ++ EKG+ P  V+Y ILI+G  ++G
Sbjct: 148 WMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREG 207

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
            + +A   L +MK+ G  P+  ++  ++ GF  K + D A +  K
Sbjct: 208 YVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK 252



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%)

Query: 38  LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
           +D+  YS +I+ LC    L +A++L   +  +GI   +  YN +I+    +     A  L
Sbjct: 492 MDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRL 551

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
             +LE+     +   Y+ +ID LC+ G   +A++  +++  KG  P V  YN LI+G CK
Sbjct: 552 FDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCK 611

Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            G + EA  LL+ +K +   PD  + + +I G+  K + + A  F 
Sbjct: 612 FGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFF 657



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   I+G C   +ID          K+GI   +  Y+S+INGLC   R  EA E     
Sbjct: 265 MYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE----- 319

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++GI  + VT++ L+H   E++     +   + LE D   +++ + + +I  L  VG  
Sbjct: 320 VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGAL 379

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164
           E+A      +S   LV   VTY  +ING C+   I EA
Sbjct: 380 EDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEA 417



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y I I+G  +   ++ AI       K G+  ++  Y++++ G C   +L EA  LF  + 
Sbjct: 196 YTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVE 255

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             GI  +   Y  LI D +  +G    +  LL+ +E+     +I  Y+ +I+GLC+ GR 
Sbjct: 256 NLGIEVDEFMYVTLI-DGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRT 314

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
            EA    D++S KG+    VT++ L++G  ++  +    +   +++E G   D    NT+
Sbjct: 315 SEA----DEVS-KGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTI 369

Query: 187 IQGFLVKNETDRASSFLK 204
           I+  L+    + A +F K
Sbjct: 370 IKALLMVGALEDAYAFYK 387



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           GNF V    I+G CKI +   A+         + +  ++   ++L+  L    R++E  +
Sbjct: 86  GNF-VSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSD 144

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV------YSL 115
           L   M  +    ++V Y+  I       G F    L++ + + K  +   +      Y++
Sbjct: 145 LVSWMEREEFVFDVVFYSSWIC------GYFREGVLVEAIRKHKEMIEKGIAPDTVSYTI 198

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +IDG  R G  E+A   L+++ + GL P +VTY  ++ G CKKG + EA  L   ++  G
Sbjct: 199 LIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLG 258

Query: 176 CFPDSTSFNTVIQGFLVKNETD 197
              D   + T+I GF  + + D
Sbjct: 259 IEVDEFMYVTLIDGFCTRGDID 280



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 42/204 (20%)

Query: 43  YSSLINGLCTFNRLKEAVELF--DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQ 99
           + SLI GLC   +  E   L   D +   GI     T++ LIH ++  QG+ S A+ +L+
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIH-SFTSQGKMSRAIEVLE 74

Query: 100 TLERDK--YELNIEVYSLVIDGLCRV---------------------------------- 123
            +  DK  Y     V S VI G C++                                  
Sbjct: 75  LMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 124 --GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
             GR  E    +  +  +  V  VV Y+  I G  ++G+++EA +   +M EKG  PD+ 
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTV 194

Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
           S+  +I GF  +   ++A  FL+K
Sbjct: 195 SYTILIDGFSREGYVEKAIGFLEK 218



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D   Y ++ING C  +R++EA+E+FD+     I++  + +          Q  F    + 
Sbjct: 397 DSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSCYLFF---------VQEGFFPGCMR 447

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
              E +K  + +     V+  L + GR  +A K +    E   V  +V Y+I+I+ LCK+
Sbjct: 448 SIHENEKETITVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKE 507

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           G + +A  L   +K+KG   +  ++N+VI G 
Sbjct: 508 GHLDKALDLCAFVKKKGIALNIYAYNSVINGL 539



 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 42/206 (20%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIK-----KGICL--DVFVYSSLINGLCTFNRLKEAV 60
           F  N  VY   I+G CK   ++ A+      K  C+  D F  S+LING C    ++ A+
Sbjct: 595 FNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGAL 654

Query: 61  ELFDKMVAQGITAELVTYNPLIHD------NWEKQGRFSAM----ALLQTLERDKYELNI 110
             F +   + I  + + +  L+          E +G    M    ++L+ + R   E+  
Sbjct: 655 GFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVLELINRVDTEIET 714

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQL----------------SEK---------GLVPGV 145
           E     I  LC  G  +EA   L+++                +EK           VP  
Sbjct: 715 ESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKIYEGKGSRVPDF 774

Query: 146 VTYNILINGLCKKGMIMEADKLLVQM 171
            +Y  LI  LC +G ++EA++   QM
Sbjct: 775 ESYYSLIASLCSRGELLEANRKTRQM 800


>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A    K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKR 184



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 10/211 (4%)

Query: 5   EQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           E R KG   +   Y + I G CK   +D AI+        G   DV  ++ ++  LC+  
Sbjct: 241 EMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGG 300

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           R  +A++L   M+ +G    +VT+N LI+   +K     A+ +L+ + +  +  N   ++
Sbjct: 301 RWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFN 360

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C     + A + L+ +  +G  P +VTYNIL+  LCK G + +A  +L Q+  K
Sbjct: 361 PLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSK 420

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC P   S+NTVI G L   + + A   L++
Sbjct: 421 GCSPSLISYNTVIDGLLKVGKAELAVELLEE 451



 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 15  YGIRINGMCKIREIDSAIK----KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
           Y + I+G CK  EI+ A++     G+  +   Y +++  LC   +LK+A+++  + +   
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211

Query: 71  ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
              ++VT   LI    ++ G   AM L   +     + ++  Y+++I G C+ GR +EA 
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           + L +L   G  P V+++N+++  LC  G  M+A KLL  M  KGC P   +FN +I
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILI 328



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R ++    KG   DV   ++LI   C   R K A ++   +   G   ++ +YN LI   
Sbjct: 100 RFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLI-SG 158

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           + K G       L+ L+R     N   Y  V+  LC  G+ ++A + L +  +    P V
Sbjct: 159 YCKSGEIEEA--LRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDV 216

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           VT  +LI+  CK+  + +A KL  +M+ KGC PD  ++N +I+GF      D A  FLKK
Sbjct: 217 VTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKK 276



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   +   I G C  + ID AI+       +G   D+  Y+ L+  LC   ++ +AV + 
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVIL 414

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
            ++ ++G +  L++YN +I D   K G+   A+ LL+ +     + ++   + V+ GL R
Sbjct: 415 SQLSSKGCSPSLISYNTVI-DGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 473

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G+  EA K    L    + P    YN +I GLCK      A   L  M  KGC P   +
Sbjct: 474 EGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEAT 533

Query: 183 FNTVIQGFLVKNETDRAS 200
           + T+I+G   +   + AS
Sbjct: 534 YTTLIKGITYEGLAEDAS 551



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%)

Query: 22  MCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81
           M  ++ + + ++KG    V  ++ LIN LC    L +A+ + + M   G T    ++NPL
Sbjct: 303 MDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 362

Query: 82  IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
           I      +G   A+  L+ +       +I  Y++++  LC+ G+ ++A   L QLS KG 
Sbjct: 363 IQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 422

Query: 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
            P +++YN +I+GL K G    A +LL +M  KG  PD  +  +V+ G   + +   A  
Sbjct: 423 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMK 482

Query: 202 FL 203
           F 
Sbjct: 483 FF 484



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 7/197 (3%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            + I IN +C+   +  A+       K G   +   ++ LI G C    +  A+E  + M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G   ++VTYN L+    +      A+ +L  L       ++  Y+ VIDGL +VG+ 
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A + L+++  KGL P ++T   ++ GL ++G + EA K    +K     P++  +N++
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSI 502

Query: 187 IQGFLVKNETDRASSFL 203
           I G     +T  A  FL
Sbjct: 503 ITGLCKSQQTSLAIDFL 519



 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I +  +CK  ++D A+        KG    +  Y+++I+GL    + + AVEL ++M
Sbjct: 393 TYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 452

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
             +G+  +L+T   ++     ++G+   AM     L+R     N  +Y+ +I GLC+  +
Sbjct: 453 CYKGLKPDLITCTSVV-GGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQ 511

Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
              A   L  +  KG  P   TY  LI G+  +G+  +A KL  ++  +G
Sbjct: 512 TSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 79  NPLIHDNWEKQGRFSAMAL---LQTLERDKYELNIEVYSLV-IDGLCRVGRWEEARKKLD 134
           N  +  N +   RFS  AL     + +R    LN E   +  +  L R G  EE  + L+
Sbjct: 44  NSGLKGNLQHSERFSKGALNGVESSPDRVNTSLNFEESEIRHLRRLIRNGELEEGSRFLE 103

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
            ++ KG  P V+    LI   CK G    A +++  ++E G   D TS+N +I G+    
Sbjct: 104 YMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSG 163

Query: 195 ETDRASSFLKK 205
           E + A   L +
Sbjct: 164 EIEEALRVLDR 174


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCT 52
            D+ E++  K +   + + I+G CK   +RE    +++ +  G   +   Y++LI+G C 
Sbjct: 163 LDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCK 222

Query: 53  FNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
              L EA++LF  + ++   AE  +VT+N LI    +      A  L++ ++      + 
Sbjct: 223 SGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             Y+ ++DGLC+ GR  E  +  +++  +G  P VVTY  L++  CK G + +A +++  
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  KG  PD T++  +++G     +   A+ F +K
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEK 377



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLK 57
           +   + N   +   I+G+CK   ++ A +       + +  D F Y++L++GLC   R  
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 58  EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           E   +F++M+ +G    +VTY  L+H + +      A  +++++       ++  Y++++
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLL 359

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
           +GL   G+   A +  +++  +   P  V Y+ L+ G CK  ++ EA K  V+M ++   
Sbjct: 360 EGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLA 419

Query: 178 PDSTSFNTVIQGFLVKNETD 197
           PD  +   +++    +  TD
Sbjct: 420 PDPATCKLLVEMLCKRGRTD 439



 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 13/200 (6%)

Query: 17  IRINGMCKIREIDSAIKK--------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68
           I ING C+++ +D A++          +  +   Y+++I   C  +RL +A +L ++  +
Sbjct: 75  ILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEE--S 132

Query: 69  QGITAELVTYNPLIHDNWEKQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVGRWE 127
              +++++    +     + Q    A  LL   +E+   + +I  ++++I G C+ GR  
Sbjct: 133 SCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVR 192

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL--LVQMKEKGCFPDSTSFNT 185
           EA + L+ L   G VP  VTY  LI+G CK G + EA +L  ++  ++    P+  +FN 
Sbjct: 193 EAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNA 252

Query: 186 VIQGFLVKNETDRASSFLKK 205
           +I G    +  + A   +K+
Sbjct: 253 LISGLCKADRLEHAFELVKQ 272



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 8/194 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGI--CLDVFVYSSLINGLCTFNRLKE 58
           + E+    N     + +  +C+   +D A  I +GI     V   + LING C    L +
Sbjct: 29  MLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGIQCSPSVITLNILINGFCELQLLDK 88

Query: 59  AVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
           A+ELF +M     +  E  TY  +I    +      A  LL+  E      ++   + V 
Sbjct: 89  ALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLE--ESSCCSSDVIAITSVA 146

Query: 118 DGLCRVGRWEEARK-KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
            G C+  R +EA +  LD + +K   P +V +N++I+G CK G + EA ++L  +   GC
Sbjct: 147 RGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGC 206

Query: 177 FPDSTSFNTVIQGF 190
            P++ ++ T+I GF
Sbjct: 207 VPNAVTYTTLIDGF 220



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           +S++I GLC+ GR  EA +  +Q+ E+  VP +   N+L+  LC+ G +   D+ +   +
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTM---DQAMAIFR 62

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRA 199
              C P   + N +I GF      D+A
Sbjct: 63  GIQCSPSVITLNILINGFCELQLLDKA 89



 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P   T+++LI GLCK G + EA +   QM E+ C P+    N ++         D+A + 
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 203 LK 204
            +
Sbjct: 61  FR 62


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   ING+CK   +D A       IK G   +V VY++LINGL   ++ ++A+ +F +M
Sbjct: 105 AYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM 164

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
                +  ++TYN LI+   + +    A  L++ L     +  +  YS++++GLC   + 
Sbjct: 165 GTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKV 224

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E A +  +Q++ KG  P V  +NILI+GLC  G +  A  L   M    C P+  S NT+
Sbjct: 225 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTL 284

Query: 187 IQGF 190
           ++GF
Sbjct: 285 MEGF 288



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   YGI ++G CK   ID ++       +KG  LD F YS++INGLC    
Sbjct: 59  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 118

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           L  AV + + M+  G    +  YN LI+          A+ + + +        I  Y+ 
Sbjct: 119 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 178

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+G C+   + EA   + +L +KGL PGV+TY++L+ GLC    +  A +L  Q+  KG
Sbjct: 179 LINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKG 238

Query: 176 CFPDSTSFNTVIQGF 190
             PD    N +I G 
Sbjct: 239 FKPDVQMHNILIHGL 253



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             +  Y++LING C      EA  
Sbjct: 135 KPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYN 194

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +++ +G+   ++TY+ L+           A+ L   +    ++ ++++++++I GLC
Sbjct: 195 LVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 254

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ + A      ++     P +V++N L+ G  K G I  A  +  ++   G  PD  
Sbjct: 255 SVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDII 314

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  ++G    N    A  FL
Sbjct: 315 SYNITLEGLCSCNRISDAILFL 336



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 74/148 (50%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           +++++ GL    ++ E + +++ M   G   + +TY  L+H   +      ++ +L+  E
Sbjct: 36  FNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAE 95

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +    L+   YS +I+GLC+    + A   L+ + + G  P V  YN LINGL       
Sbjct: 96  QKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFE 155

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           +A ++  +M    C P   ++NT+I GF
Sbjct: 156 DAIRVFREMGTMHCSPTIITYNTLINGF 183



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
           ++  ++ ++ GL   G+ +E     + + E G V   +TY IL++G CK G I ++  +L
Sbjct: 32  SVSSFNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 91

Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
              ++KG   D+ +++ +I G   +   DRA S L
Sbjct: 92  EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVL 126


>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A    K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 42/219 (19%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y   +NG C+I ++D AI        +G+  +   ++S+I+  C    + +A E   KM
Sbjct: 279 IYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKM 338

Query: 67  VAQGITAELVTYNPLI-------------------HDNWEKQGRFSAMALLQTLERDKYE 107
           V +GI   + TYN LI                    +N EK    S  +L+  L +D   
Sbjct: 339 VGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKI 398

Query: 108 L----------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
           L                N  +Y+++IDG C VG+  EA +  D++S+ G+   +VTYN L
Sbjct: 399 LEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSL 458

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           I GLCK G + EA+++   +   G  PD  ++N++I G+
Sbjct: 459 IKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY 497



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 10/196 (5%)

Query: 19  INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK  E+D AI       K+ +   +  ++SL++GLC   R++EA  + +++   G 
Sbjct: 143 IDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGF 202

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY--SLVIDGLCRVGRWEEA 129
             +  TY+ +I D   K    +  AL    E     + I+ Y  S++++GLC+ G+ E+A
Sbjct: 203 VPDGFTYS-IIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKA 261

Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
            + L  L E GLVPG V YN ++NG C+ G +  A   + QM+ +G  P+  +FN+VI  
Sbjct: 262 EEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDK 321

Query: 190 FLVKNETDRASSFLKK 205
           F      D+A  ++KK
Sbjct: 322 FCEMQMIDKAEEWVKK 337



 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 45/236 (19%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           F+ +  VYG  +    K+ ++  A+       ++ +  +VFVY+ LI GLC   R+++A 
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAE 121

Query: 61  ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
           +LF +M  + +    VT+N LI D + K G    A+ L + ++++K E +I  ++ ++ G
Sbjct: 122 KLFGEMSVRNLVPNRVTFNTLI-DGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTY------------------------------- 148
           LC+  R EEAR  L+++   G VP   TY                               
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 149 -----NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
                +IL+NGLCK+G + +A+++L  + E G  P    +NT++ G+    + DRA
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRA 296



 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 10/189 (5%)

Query: 11  NFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N ++Y + I+G C   K+RE     D   K GI   +  Y+SLI GLC   +LKEA E+F
Sbjct: 416 NANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMF 475

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
             + + G   +++TYN LI            + L +T+++   +  I  +  +I G  + 
Sbjct: 476 FLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKE 535

Query: 124 G-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
           G + +E     +++ +  L P  V YN +I+   + G + +A  L  +M + G  PD+ +
Sbjct: 536 GIKLKETL--FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKT 593

Query: 183 FNTVIQGFL 191
           +N++I G L
Sbjct: 594 YNSLILGHL 602



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 10/212 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E   K N   YG  IN +CK  +I  A       + +G+  +  +Y+ LI+G CT  
Sbjct: 372 EMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVG 431

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
           +L+EA+  FD+M   GI A +VTYN LI     K G+   A  +   +    +  ++  Y
Sbjct: 432 KLREALRFFDEMSKNGIGATIVTYNSLIK-GLCKMGKLKEAEEMFFLITSTGHCPDVITY 490

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I G    G  ++  +  + + + GL P + T++ LI+G  K+G+ ++ + L  +M +
Sbjct: 491 NSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK-ETLFNEMLQ 549

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               PD   +N +I  +       +A S  K+
Sbjct: 550 MNLSPDRVVYNAMIHCYQETGHVQKAFSLQKE 581



 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 35/194 (18%)

Query: 31  AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
           AI KG+ +D +  S L+NGLC   ++++A E+   +V  G+    V YN +++   +   
Sbjct: 233 AIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGD 292

Query: 91  RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A+  ++ +E      N   ++ VID  C +   ++A + + ++  KG+ P V TYNI
Sbjct: 293 MDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNI 352

Query: 151 LING-----------------------------------LCKKGMIMEADKLLVQMKEKG 175
           LI+G                                   LCK G I+EA+ +L  M  +G
Sbjct: 353 LIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRG 412

Query: 176 CFPDSTSFNTVIQG 189
             P++  +N +I G
Sbjct: 413 VLPNANIYNMLIDG 426



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%)

Query: 46  LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
           ++  L    +    ++LF +MV  G   + + Y   +    +      AM L +T++R K
Sbjct: 37  IVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK 96

Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
              N+ VY+++I GLC+  R  +A K   ++S + LVP  VT+N LI+G CK G +  A 
Sbjct: 97  VVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAI 156

Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            L  +MK++   P   +FN+++ G       + A   L +
Sbjct: 157 GLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNE 196



 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 41/230 (17%)

Query: 14  VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING----------------- 49
            Y   I G+CK+ ++  A          G C DV  Y+SLI+G                 
Sbjct: 454 TYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM 513

Query: 50  --------LCTFNRL-----KEAVEL----FDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
                   + TF+ L     KE ++L    F++M+   ++ + V YN +IH   E     
Sbjct: 514 KKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQ 573

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
            A +L + +       + + Y+ +I G  + G+  E +  +D +  KGL+P   TY++LI
Sbjct: 574 KAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLI 633

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
            G C       A     +M E G  P+    N +  G         A S 
Sbjct: 634 QGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSI 683



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-L 97
           D  VY+++I+       +++A  L  +MV  G+  +  TYN LI  +  K+G+ S    L
Sbjct: 555 DRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHL-KEGKLSETKDL 613

Query: 98  LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           +  ++        + YSL+I G C +  +  A     ++ E G +P V   N L  GL K
Sbjct: 614 VDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRK 673

Query: 158 KGMIMEADKLLVQMKEKG 175
            G + EA  +  +M   G
Sbjct: 674 DGRLQEAQSICSEMIANG 691



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%)

Query: 32  IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
           +  G+  D   Y+SLI G     +L E  +L D M A+G+  E  TY+ LI  + + +  
Sbjct: 583 VDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDF 642

Query: 92  FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141
             A    + +  + +  N+ + + +  GL + GR +EA+    ++   G+
Sbjct: 643 NGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 22  MCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           +CK + ++ A       K     D   Y+ ++NG C   R  +A+E+  +MV +G+T  L
Sbjct: 181 LCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNL 240

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135
            +YN ++   +       A      +++   E+++  Y+ VI G    G  + ARK  D 
Sbjct: 241 TSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDT 300

Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195
           + +KG++P V TYN  I  LCKK  +  A  +  +M  KG  P+S ++N VI+G   + E
Sbjct: 301 MVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGE 360

Query: 196 TDRASSFLKK 205
            +RA  F+ +
Sbjct: 361 MERAMEFMGR 370



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA------IKKGIC-LDVFVYSSLINGLCTFN 54
           ++ ++    N   Y   + G  +  +I+ A      +KK  C +DV  Y+++I+G     
Sbjct: 230 EMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAG 289

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +K A ++FD MV +G+   + TYN  I    +K    +A+ + + +    Y  N   Y+
Sbjct: 290 EIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYN 349

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           LVI GLC  G  E A + + ++ + G  P V TYN++I   C +G I +A  L  +M   
Sbjct: 350 LVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSG 409

Query: 175 GCFPDSTSFNTVIQGFLVKNETD 197
            C P+  ++N +I    V+ ++D
Sbjct: 410 DCLPNLDTYNILISAMFVRKKSD 432



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 5/196 (2%)

Query: 14  VYGIRINGMCK-IREI-DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           ++G  + G  K  R++ D+ +KKG+   V  Y++ I  LC  + +  A+ +F++MV +G 
Sbjct: 282 IHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGY 341

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
               +TYN +I     +     AM  +  ++ D  E N++ Y+LVI   C  G  ++A  
Sbjct: 342 VPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALD 401

Query: 132 KLDQLSEKGLVPGVVTYNILINGLC---KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
              +++    +P + TYNILI+ +    K   ++ A  LL++M ++G  P   +FN V+ 
Sbjct: 402 LFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLN 461

Query: 189 GFLVKNETDRASSFLK 204
           G L+      A   L+
Sbjct: 462 GLLLTGNQGFAKEILR 477


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 44/234 (18%)

Query: 15  YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   +NG  ++ ++D   +        G+  DV+ YS LINGLC  +++ +A ELFD+M+
Sbjct: 180 YNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 239

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
            +G+    VT+  LI D   K GR   AM + + +       ++  Y+ +I GLC+ G  
Sbjct: 240 VKGLVPNGVTFTTLI-DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 298

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-----------MIME------------ 163
           ++A   +D++S KGL P  +TY  LI+G CK+G           MI E            
Sbjct: 299 KQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTAL 358

Query: 164 ------------ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
                       A+K+L +M   G  PD+ ++  +I  F  K +  + S  LK+
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 412



 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 9/179 (5%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   +D A++       + +  D+  Y++LI GLC    LK+A  L D+M  +G+
Sbjct: 254 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 313

Query: 72  TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
             + +TY  LI D   K+G   SA    + + ++   L+   Y+ +I GLC+ GR  +A 
Sbjct: 314 KPDKITYTTLI-DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           K L ++   GL P   TY ++IN  CKKG + +  KLL +M+  G  P   ++N ++ G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  +I       D+  K G+   V  Y++L+NG     
Sbjct: 132 EILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 191

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M+A G+  ++ TY+ LI+   ++     A  L   +       N   ++
Sbjct: 192 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFT 251

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ GR + A +   Q+  + L P ++TYN LI GLCKKG + +A  L+ +M  K
Sbjct: 252 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVK 311

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G   + + D A    K+
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDSAFEHRKR 342



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 74/165 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           D++V+S LI        L++A+E +           + T   ++    + +         
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D +++ GL P VV+YN L+NG  + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G + E  +L   M   G  PD  +++ +I G   +++ D A+   
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELF 235



 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-------AQGITA-----------ELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V       A  + A           ++  ++ LI  
Sbjct: 22  YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIYVFSGLITA 81

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ + I+    V++ L ++  ++      +++ E G    
Sbjct: 82  YLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 141

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK G I  A  +   + + G  P   S+NT++ G++   + D  
Sbjct: 142 LYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196


>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
 gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 93/167 (55%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
           R +D  ++KG   +V   + LIN  C   +L+   ++F+ M   G    + TYN L+   
Sbjct: 197 RVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGM 256

Query: 86  WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
                   A  L++ +++   E +I  Y+ ++DG C+VGR +EA + L++  E GL P V
Sbjct: 257 CYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNV 316

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
           VT+N L++G  K+G  ++   +L  MK++ C PD  S++T++ G L+
Sbjct: 317 VTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLL 363



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 14/204 (6%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N   Y   + GMC +  ID A        K  +  D++ Y+++++G C   R  EA+E
Sbjct: 243 KPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAME 302

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGL 120
           L ++ +  G+   +VT+N L+ D + K+GR      +L+ +++ K   +   YS ++ GL
Sbjct: 303 LLNEAMEMGLAPNVVTFNTLL-DGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGL 361

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-----MIMEADKLLVQMKEKG 175
              G+     +  +++   GL       N L+ GLC+K      ++  A ++  +MK++G
Sbjct: 362 LLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRG 421

Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
              + +++  VIQ   V  + D A
Sbjct: 422 FVIEQSTYALVIQALWVAKKVDDA 445



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 41  FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQ 99
           + +S ++   C      EA  + D+M+ +G    + T   LI +++ K G+  +   + +
Sbjct: 177 WTFSIMVRCHCKKKDPGEAKRVLDQMMQKGFNPNVATLTILI-NSFCKMGQLQNTFQVFE 235

Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
            ++R   + NI+ Y+ ++ G+C VGR +EA + ++ + +  + P + TY  +++G CK G
Sbjct: 236 VMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVG 295

Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
              EA +LL +  E G  P+  +FNT++ G+
Sbjct: 296 RSDEAMELLNEAMEMGLAPNVVTFNTLLDGY 326



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 79/165 (47%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
           ++ ++  L T N     ++L+  +    +     T++ ++  + +K+    A  +L  + 
Sbjct: 144 FNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVLDQMM 203

Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
           +  +  N+   +++I+  C++G+ +   +  + +   G  P + TYN L+ G+C  G I 
Sbjct: 204 QKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRID 263

Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
           EA +L+  +K+    PD  ++  ++ GF     +D A   L + M
Sbjct: 264 EAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAM 308



 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 35  GICLDVFVYSSLINGLCTFNRLKE------AVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           G+  D  + +SL+ GLC    +KE      A E+F+KM  +G   E  TY  +I   W  
Sbjct: 381 GLEADERLMNSLVRGLCR-KSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQALWVA 439

Query: 89  QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
           +    A   L  + R  Y   +   + VI  LC  G+ ++A   L  + E   +P  ++Y
Sbjct: 440 KKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGKVDKAFYVLVLMYENSKIPSRMSY 499

Query: 149 NILINGL 155
           ++LI+ L
Sbjct: 500 DLLIHEL 506


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            + EQ    N + Y   ING CK      A +       +G   +++ Y++ I+ LC  +R
Sbjct: 985  MKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 1044

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              EA EL +K  + G+ A+ VTY  LI +  ++     A+A    + +  +E ++ + ++
Sbjct: 1045 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNI 1104

Query: 116  VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
            +I   CR  + +E+ +    +   GL+P   TY  +I+  CK+G I  A K    MK  G
Sbjct: 1105 LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHG 1164

Query: 176  CFPDSTSFNTVIQGFLVKNETDRA 199
            C PDS ++ ++I G   K+  D A
Sbjct: 1165 CVPDSFTYGSLISGLCKKSMVDEA 1188



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 1/175 (0%)

Query: 32   IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
            I  G   ++  ++SLI+GLC    +K+A E+ ++MV  G    + T+  LI    ++   
Sbjct: 880  IDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWT 939

Query: 92   FSAMALLQTLER-DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
              A  L   L R D Y+ N+  Y+ +I G C+  +   A     ++ E+GL P V TY  
Sbjct: 940  EKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 999

Query: 151  LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LING CK G    A +L+  M ++G  P+  ++N  I     K+    A   L K
Sbjct: 1000 LINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 1054



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 24   KIREID----SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
            KI+E D      I++G   D    + ++  LC    +  A+  F KM+  G    L+ + 
Sbjct: 833  KIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFT 892

Query: 80   PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-RKKLDQLSE 138
             LI    +K     A  +L+ + R+ ++ N+  ++ +IDGLC+ G  E+A R  L  +  
Sbjct: 893  SLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 952

Query: 139  KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
                P V TY  +I G CK+  +  A+ L  +MKE+G FP+  ++ T+I G        R
Sbjct: 953  DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGR 1012

Query: 199  A 199
            A
Sbjct: 1013 A 1013



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 20/210 (9%)

Query: 8    FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
            FK N   +   I+G+CK   I  A       ++ G   +V+ +++LI+GLC     ++A 
Sbjct: 884  FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAF 943

Query: 61   ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-------SAMALLQTLERDKYELNIEVY 113
             LF K+V         TY P +H      G +        A  L   ++      N+  Y
Sbjct: 944  RLFLKLVRSD------TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTY 997

Query: 114  SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
            + +I+G C+ G +  A + ++ + ++G +P + TYN  I+ LCKK    EA +LL +   
Sbjct: 998  TTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFS 1057

Query: 174  KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             G   D  ++  +IQ    +N+ ++A +F 
Sbjct: 1058 CGLEADGVTYTILIQEQCKQNDINQALAFF 1087



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 10/192 (5%)

Query: 8    FKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTFNRLKEA 59
            +K N + +   I+G+CK    + A +  + L        +V  Y+S+I G C  ++L  A
Sbjct: 919  WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 978

Query: 60   VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
              LF +M  QG+   + TY  LI+ +  K G F  A  L+  +  + +  NI  Y+  ID
Sbjct: 979  EMLFSRMKEQGLFPNVNTYTTLINGHC-KAGSFGRAYELMNLMGDEGFMPNIYTYNAAID 1037

Query: 119  GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
             LC+  R  EA + L++    GL    VTY ILI   CK+  I +A     +M + G   
Sbjct: 1038 SLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEA 1097

Query: 179  DSTSFNTVIQGF 190
            D    N +I  F
Sbjct: 1098 DMRLNNILIAAF 1109



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 1/173 (0%)

Query: 34  KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
           +G+  D   Y  ++ G     +++EA      M+ +G   +  T   ++    E      
Sbjct: 812 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 871

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+   + +    ++ N+  ++ +IDGLC+ G  ++A + L+++   G  P V T+  LI+
Sbjct: 872 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 931

Query: 154 GLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GLCK+G   +A +L +++     + P+  ++ ++I G+  +++ +RA     +
Sbjct: 932 GLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 984



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 14   VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y   I+  CK  +ID A+K        G   D F Y SLI+GLC  + + EA +L++ M
Sbjct: 1136 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 1195

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
            + +G++   VT   L ++  ++    +AM LL+ L++   +L I     ++  LC
Sbjct: 1196 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDK---KLWIRTVRTLVRKLC 1247



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 14/171 (8%)

Query: 42  VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
           V   ++       RL EAV +   M  QG+T   +T N ++    E       + L++  
Sbjct: 750 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVE-------LGLIEYA 802

Query: 102 ERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           E    E+++         Y L++ G  R G+ +EA + L  + ++G +P   T  +++  
Sbjct: 803 ENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 862

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           LC+ G++  A     +M + G  P+  +F ++I G   K    +A   L++
Sbjct: 863 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 913



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 14   VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
             Y I I   CK  +I+ A+       K G   D+ + + LI   C   ++KE+  LF  +
Sbjct: 1066 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 1125

Query: 67   VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
            V+ G+     TY  +I   + K+G    A+     ++R     +   Y  +I GLC+   
Sbjct: 1126 VSLGLIPTKETYTSMI-SCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 1184

Query: 126  WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
             +EA K  + + ++GL P  VT   L    CK+     A  LL  + +K
Sbjct: 1185 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKK 1233


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 35/186 (18%)

Query: 20  NGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
           N +C ++  D   K G+  D   +S+ INGLC  + + EA + F +M A+GI     TYN
Sbjct: 510 NAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYN 569

Query: 80  PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                                               +I  LCR G   EA K    + + 
Sbjct: 570 S-----------------------------------IISALCRAGNMTEALKLQQNMRQN 594

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           GLVP + T NILI+GLC++G +   D LL+ M   G  PD+ ++NT+I  +    + + A
Sbjct: 595 GLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSA 654

Query: 200 SSFLKK 205
            +F+ K
Sbjct: 655 MNFMNK 660



 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           D+ +   + +F  +   ING+C++  ++ A +       +GI  + F Y+S+I+ LC   
Sbjct: 520 DMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAG 579

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
            + EA++L   M   G+  ++ T N LI D   ++G+   +  LL  +  +    +   Y
Sbjct: 580 NMTEALKLQQNMRQNGLVPDIYTSNILI-DGLCREGKLEMVDNLLLDMCSNGLTPDTVTY 638

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
           + +I+  CR      A   ++++   G  P + TYNI ++ LC   M+ +A K+L ++  
Sbjct: 639 NTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVA 698

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
            GC PDS ++NT++ G +  +  DRA
Sbjct: 699 MGCPPDSVTYNTLMDG-ICSDVLDRA 723



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN----WEKQGRFSAMALL 98
           ++++I G C    ++ A  L   M   GI   + +YN LI  +    W +     A  L 
Sbjct: 222 FNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSR----DAFKLF 277

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + + R   E  +  Y++++D LC  GR  EAR+  D++++ G+    +T+N+LI+G  K 
Sbjct: 278 EEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKT 337

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
           G + +A     +MK +G  PDS +FN +  G
Sbjct: 338 GRMDQACAAYREMKARGLVPDSCTFNIIAAG 368



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 16/215 (7%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
           ++T +    N   Y   I+ +C+   +  A+K        G+  D++  + LI+GLC   
Sbjct: 555 EMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREG 614

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           +L+    L   M + G+T + VTYN +I+     +   SAM  +  +     E +I  Y+
Sbjct: 615 KLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYN 674

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQ 170
           + +  LC      +A K LD+L   G  P  VTYN L++G+C     + MI+     L++
Sbjct: 675 IWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAMILTGR--LIK 732

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           M  +   P++ + N  +  F  +    RA  + +K
Sbjct: 733 MAFQ---PNTITLNVFLSHFCKQGFGKRALMWAEK 764



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 73/143 (51%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A  +F++M A+G    L T+N +I     +     A  LL  +       N+  Y+++I 
Sbjct: 203 AWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIK 262

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C  G   +A K  +++   G  P VVTYNIL++ LC +G + EA +L  +M + G   
Sbjct: 263 GHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQA 322

Query: 179 DSTSFNTVIQGFLVKNETDRASS 201
           ++ +FN +I G+      D+A +
Sbjct: 323 NTITFNVLIDGYAKTGRMDQACA 345



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 41/234 (17%)

Query: 11  NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I I G C         +  +   + G    V  Y+ L++ LC   R+ EA  LF
Sbjct: 253 NVCSYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLF 312

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLER-----DKYELNI------- 110
           D+M   GI A  +T+N LI D + K GR   A A  + ++      D    NI       
Sbjct: 313 DEMAQVGIQANTITFNVLI-DGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYK 371

Query: 111 -----------EVYS--LVIDGL----CRVG---RWEEARKKLDQLSEKGLVPGVVTYNI 150
                      +++   ++ DG+    CR+    R ++A + L    E+G    V  +N 
Sbjct: 372 FGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNA 431

Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           LI    K+G+  EA +L   M + G  P S++FN +I G   +   D A   L+
Sbjct: 432 LIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLE 485



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 37/192 (19%)

Query: 26  REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN------ 79
           R  D   + GI  +   ++ LI+G     R+ +A   + +M A+G+  +  T+N      
Sbjct: 310 RLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGA 369

Query: 80  -------PLIHDN--------------------WEKQGRFSAMALLQTLERDKYELNIEV 112
                   L+HD+                    W+ +    A  LL+        L++  
Sbjct: 370 YKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLD-DAWELLRGAIEQGAPLSVTG 428

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           ++ +I    + G  EEA +    +++ GL P   T+N LI GLC +G + EA  LL  M 
Sbjct: 429 FNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMV 488

Query: 173 EKG-CFPDSTSF 183
            KG C   STSF
Sbjct: 489 SKGYCL--STSF 498



 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           R G    A    ++++ +G  P + T+N +I G C +G++  A  LL  M E G  P+  
Sbjct: 196 RSGEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVC 255

Query: 182 SFNTVIQGFLV 192
           S+N +I+G  V
Sbjct: 256 SYNILIKGHCV 266


>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A    K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKR 182



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMXLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 19  INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           +NG  ++ ++D   +        GI  DV+ YS LINGLC  +++ +A ELFD+M+  G+
Sbjct: 178 MNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGL 237

Query: 72  TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
               VT+  LI D   K G    AM   + + R  +  ++  Y+ +I GLC+ G  ++A+
Sbjct: 238 VPNGVTFTTLI-DGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQ 296

Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
             +D++S KGL P  +TY  LI+G CK+G +  A K   +M ++    D  ++  +I G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGL 356

Query: 191 LVKNETDRASSFLKK 205
             + ++  A   L++
Sbjct: 357 CREGQSVGAEKMLRE 371



 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           + + Y + ING+CK  +++ A       I  G+  +   +++LI+G C    +  A+E +
Sbjct: 205 DVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAY 264

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +M+ QG + +L+TYN LI+   ++     A  L+  +     + +   Y+ +IDG C+ 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E A K   ++ ++ +    V Y  LI+GLC++G  + A+K+L +M   G  PD+ ++
Sbjct: 325 GDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTY 384

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
             +I  F  K +    S  LK+
Sbjct: 385 TMIINEFCKKGDVKMGSKLLKE 406



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 19  INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
           I+G CK   ID A       +++G   D+  Y++LI GLC    LK+A +L D+M  +G+
Sbjct: 248 IDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGL 307

Query: 72  TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
             + +TY  LI  + ++    +A    + + ++   L+   Y+ +I GLCR G+   A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEK 367

Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
            L ++   GL P   TY ++IN  CKKG +    KLL +M+  G  P
Sbjct: 368 MLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
           ++ E  +  + + + I ++  CK  E+       D   K G+   V  +++L+NG     
Sbjct: 126 EILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLG 185

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            L E   L   M   GI  ++ TY+ LI+   ++     A  L   +  +    N   ++
Sbjct: 186 DLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFT 245

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +IDG C+ G  + A +   ++  +G  P ++TYN LI GLCK+G + +A  L+ +M  K
Sbjct: 246 TLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMK 305

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G  PD  ++ T+I G   + + + A  + K+
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETAFKYKKR 336



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 74/165 (44%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           DV+V+S LI        L +A+E F             T   ++    + +   S     
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFY 124

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           + +    Y  ++  +++++   C+ G    A+   D++++ GL P VV++N L+NG  + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
           G + E  +L   M   G  PD  +++ +I G   +++ + A+   
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELF 229



 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 43  YSSLINGLCTFNRLKEAVELFDKMV-----------------AQGIT-AELVTYNPLIHD 84
           Y ++I+ LCT   L EA  L   +V                 A+G   +++  ++ LI  
Sbjct: 16  YCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGLITA 75

Query: 85  NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
             E      A+   +     K+ +  +    V++   ++  ++       ++ E G    
Sbjct: 76  YLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPAS 135

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           +  +NIL++  CK+G +  A  +  ++ + G  P   SFNT++ G++   + D  
Sbjct: 136 LYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190


>gi|341605685|gb|AEK82945.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + B A    K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLFKR 182



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKXDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G   D  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVBEAMXLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTFNRLKEA 59
            K N + +   I+G+CKI   + A +  + L        +V  Y+ +I G C   +L  A
Sbjct: 274 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 333

Query: 60  VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
             L  +MV QG+     TY  LI  +  K G F  A  L+  ++++ +  NI  Y+ VID
Sbjct: 334 EMLLVRMVEQGLKPNTNTYTTLIGGHC-KGGSFDRAFELMNKMKQEGFLPNIYTYNAVID 392

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           G C+ G+ +EA K L   + +GL    +TY ILI   CK+G I  A  L  +M E GC P
Sbjct: 393 GFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 452

Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
           D  ++ ++I  +  + + + +  F  K
Sbjct: 453 DIEAYTSLISTYCQQRQMEESQKFFDK 479



 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 9/186 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + EQ  K N + Y   I G CK    D A        ++G   +++ Y+++I+G C   +
Sbjct: 340 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 399

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++EA ++     +QG+  + +TY  LI ++  KQG  + A+ L   +  +    +IE Y+
Sbjct: 400 IQEAYKVLRMATSQGLKFDKITYTILITEHC-KQGHITYALDLFDRMVENGCCPDIEAYT 458

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I   C+  + EE++K  D+    GL+P   TY  +I G CK G    A ++  +M + 
Sbjct: 459 SLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQN 518

Query: 175 GCFPDS 180
           GCF DS
Sbjct: 519 GCFADS 524



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 29  DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
           D   + G+C D   + +L+   C   +++E   L   M   G + +  T   ++    EK
Sbjct: 162 DGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEK 221

Query: 89  QGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            GRF  ++   + +       N+  Y+  IDGLC+    ++A   L+++  +GL P V T
Sbjct: 222 -GRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 280

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFL 203
           +  LI+GLCK G    A +L +++ +   + P+  ++  +I G+  + +  RA   L
Sbjct: 281 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLL 337



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVI 117
           A ++FD M   G+  +  ++  L+     ++G+   + ALL  + R  + L+    ++V+
Sbjct: 157 ARKVFDGMTRAGVCPDERSFRALVVVCC-REGKVEEVDALLAAMWRYGFSLDNATCTVVV 215

Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
             LC  GR+++  +   ++ E G  P VV Y   I+GLCK+  + +A  +L +M  +G  
Sbjct: 216 RSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK 275

Query: 178 PDSTSFNTVIQGFLVKNETDRA 199
           P+  +  T+I G      T+RA
Sbjct: 276 PNVYTHTTLIDGLCKIGWTERA 297



 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 61/152 (40%)

Query: 54  NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
            RL EA ++  +M + G+   + T N ++    E      A  +   + R     +   +
Sbjct: 117 GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSF 176

Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
             ++   CR G+ EE    L  +   G      T  +++  LC+KG   +  +   +M E
Sbjct: 177 RALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLE 236

Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            G  P+  ++   I G   +    +A   L++
Sbjct: 237 MGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEE 268


>gi|399107202|gb|AFP20365.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 12  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 70

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          GL    + Y+ L
Sbjct: 71  EDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSL 130

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + B A    K+
Sbjct: 131 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLFKR 184



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 20  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 79

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 80  MIDEGFKXDVVTYSVVV-NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAG 138

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLFKRMEEEEGCDQTVYTY 198

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 199 TILISGMF 206



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
           S +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI
Sbjct: 2   SCVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI 61

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
           +G  K G + +A +LL +M ++G   D  +++ V+ G       + A  + +
Sbjct: 62  DGYAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQ 113



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G+ ++   YSSLI+GL    R
Sbjct: 80  MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 139

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVBEAMXLFKRMEEEEGCDQTVYTY 198

Query: 114 SLVIDGLCRVGRWE 127
           +++I G+ +  R E
Sbjct: 199 TILISGMFKDHRNE 212



 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 9   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 68

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 69  SVEDAIRLLHR 79


>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 33  KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
           +KGI +   V+S +I GLC   +L E   +F+ M+ +G    +  Y  LI D + K G  
Sbjct: 10  EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLI-DGYAKSGSV 68

Query: 93  -SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
             A+ LL  +  + ++ ++  YS+V++GLC+ GR EEA          G     + Y+ L
Sbjct: 69  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGXAINSMFYSSL 128

Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           I+GL K G I EA++L  +M EKGC  DS  +N +I       + D A +  K+
Sbjct: 129 IDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKR 182



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 10/188 (5%)

Query: 13  HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
           HV+ + I G+CK  +++         I+KG   +V +Y+ LI+G      +++A+ L  +
Sbjct: 18  HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 77

Query: 66  MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
           M+ +G   ++VTY+ ++ +   K GR   A+   QT   +   +N   YS +IDGL + G
Sbjct: 78  MIDEGFKPDVVTYSVVV-NGLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAG 136

Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSF 183
           R +EA +  +++SEKG       YN LI+ L K G + EA  L  +M +E+GC     ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 184 NTVIQGFL 191
             +I G  
Sbjct: 197 TILISGMF 204



 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)

Query: 95  MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           +AL Q ++    ++   V+SLVI GLC+ G+  E     + +  KG  P V  Y +LI+G
Sbjct: 2   VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 61

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
             K G + +A +LL +M ++G  PD  +++ V+ G       + A  + +
Sbjct: 62  YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQ 111



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + ++ FK +   Y + +NG+CK   ++ A+         G  ++   YSSLI+GL    R
Sbjct: 78  MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGR 137

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDK-YELNIEVY 113
           + EA  LF++M  +G T +   YN LI D   K G+   AM L + +E ++  +  +  Y
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALI-DALTKHGKVDEAMTLFKRMEEEEGCDQTVYTY 196

Query: 114 SLVIDGL 120
           +++I G+
Sbjct: 197 TILISGM 203



 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
           ++ EKG+      ++++I GLCK+G + E   +   M  KG  P+   +  +I G+    
Sbjct: 7   EMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSG 66

Query: 195 ETDRASSFLKK 205
             + A   L +
Sbjct: 67  SVEDAIRLLHR 77


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 7/181 (3%)

Query: 23  CKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82
           C +RE       G+ +D +  ++L+ G C  + L++A  L   M   G      +Y  LI
Sbjct: 203 CLLRE------SGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILI 256

Query: 83  HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
               E +    A+ L+  +  D   LN+  Y+L+I GLC+ GR  +AR  LD++  +G+V
Sbjct: 257 QGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVV 316

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
           P V TYN +I+G CK G + +A  +   M++ GC PD  ++N++I G L   + D A   
Sbjct: 317 PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYG-LCGGKLDEAEEL 375

Query: 203 L 203
           L
Sbjct: 376 L 376



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 108/199 (54%), Gaps = 8/199 (4%)

Query: 14  VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y   I+G CK   +  A+       + G   D + Y+SLI GLC   +L EA EL +  
Sbjct: 321 TYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGA 379

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           +A+G T  ++T+  LI+   + +    A+ +   +     +L+++ Y ++I+ L +  R 
Sbjct: 380 IARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRL 439

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA++ L+++   GL P VVTY  +I+G CK GM+  A ++   M+ +GC P++ ++ ++
Sbjct: 440 KEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSL 499

Query: 187 IQGFLVKNETDRASSFLKK 205
           I G +   +  +A + + K
Sbjct: 500 IYGLIQDKKLHKAMALITK 518



 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 5/210 (2%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNR 55
           F++ EQ     +   Y +  + +CK    + A    ++KG+ L    Y+SL++G      
Sbjct: 551 FEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGN 610

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
              A  L +KMV +G  A+L TY+ L+    +++    A+++L  +     + NI  Y++
Sbjct: 611 TDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI 670

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I  + + G+ + A+   +++   G  P   TY + I+  CK G I EA+ L+ +M+  G
Sbjct: 671 IISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG 730

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             PD  ++N  I G       DRA S LK+
Sbjct: 731 VTPDVVTYNIFINGCGHMGYIDRAFSTLKR 760



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           I+  + +G   D++ YS L+  LC   +L EA+ + D+M   G+   +V Y  +I +  +
Sbjct: 618 IEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIK 677

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           +     A +L   +    ++ +   Y++ I   C++GR EEA   + ++   G+ P VVT
Sbjct: 678 EGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVT 737

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
           YNI ING    G I  A   L +M +  C P+  ++  +++ FL
Sbjct: 738 YNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 10/211 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGM---CKIRE----IDSAIKKGICLDVFVYSSLINGLCTFN 54
           ++     K +   YG+ IN +   C+++E    ++     G+  +V  Y+S+I+G C   
Sbjct: 413 NMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVG 472

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
            +  A+E+F  M  +G      TY  LI+   + +    AMAL+  ++ D     +  Y+
Sbjct: 473 MVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYT 532

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I G C+   ++ A +  + + + GL P    YN+L + LCK G   EA   LV+   K
Sbjct: 533 TLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR---K 589

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G      ++ +++ GF     TD A+  ++K
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           ++  +K G+   V  YSS+I G C   RL+EA  L D M+ + I+     Y  LI    +
Sbjct: 809 LERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCD 868

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
            +    A++ +  +    ++  +E Y  +I GLC  G ++ A+     L         V 
Sbjct: 869 IKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVA 928

Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
           + IL +GL K G +    +LL  M  + C  DS S++
Sbjct: 929 WKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYS 965



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 23/225 (10%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
           ++     K +   Y + I+  CKI  I+ A        + G+  DV  Y+  ING     
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMG 749

Query: 55  RLKEAVELFDKMVAQGITAELVTY---------NPLIHDNW-EKQGRFSAMAL---LQTL 101
            +  A     +MV         TY           LI+ ++ +  G ++ + L    Q L
Sbjct: 750 YIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLL 809

Query: 102 ERD-KYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           ER  K+ LN  V  YS +I G C+  R EEA   LD +  K + P    Y +LI   C  
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDI 869

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            +  +A   +  M E G  P   S++ +I G   + + DRA S  
Sbjct: 870 KLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLF 914



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 7/186 (3%)

Query: 25  IREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
           +RE   AI+       K + L    Y+  +  L  F+  +   +L+  +V +G+  + VT
Sbjct: 122 VREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVT 181

Query: 78  YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
           YN +I    +K     A      L     +++    + ++ G CR     +A   L  + 
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMP 241

Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
             G      +Y ILI GLC+   + EA  L+  M   GC  +  ++  +I+G   +    
Sbjct: 242 LMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIH 301

Query: 198 RASSFL 203
            A   L
Sbjct: 302 DARGLL 307



 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 93  SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE------KGLVPGVV 146
           S  ALLQ L R +   N +   LV+  +   G  E+ R+ +D +        K LV    
Sbjct: 88  SHAALLQLLARRRAPANYD--KLVLSMISCSGTAEDVREAVDAIQAIRRVGGKRLVLSPK 145

Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
            YN+ +  L +  M     KL   + ++G  PD+ ++NT+I  +  K     A  + 
Sbjct: 146 CYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYF 202


>gi|255661026|gb|ACU25682.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 376

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNR 55
           + E  F  +   YGI ++G CK       +  ++ A + G  LD F YS++ING C   +
Sbjct: 85  MKESGFVEDXTTYGILVHGFCKNGYNNKSLHVLEIAXQXGGVLDAFAYSAMINGXCKXGK 144

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             +AV + + M+  G       YN LI+          A+ + + L        I  Y+ 
Sbjct: 145 XDKAVSVLNGMIXSGCKXNTHVYNALINGLXXASKFEDAIRVFKELGTXHCSPTIVTYNT 204

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +I+GLC+  R+ EA   + ++ EKG  P  +TY++LI GLC+   +  A +L  Q+  KG
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWXPSXITYSLLIKGLCQDHKVEMALQLWNQVISKG 264

Query: 176 CFPDSTSFNTVIQGFLVKNETDRAS 200
             PD    N +  G     +T+ AS
Sbjct: 265 FXPDVQMHNILXHGLCSVGKTZXAS 289



 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 15  YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CK  + D A       I  G   +  VY++LINGL   ++ ++A+ +F ++ 
Sbjct: 132 YSAMINGXCKXGKXDKAVSVLNGMIXSGCKXNTHVYNALINGLXXASKFEDAIRVFKELG 191

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
               +  +VTYN LI+   + +    A  L++ +    +  +   YSL+I GLC+  + E
Sbjct: 192 TXHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWXPSXITYSLLIKGLCQDHKVE 251

Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            A +  +Q+  KG  P V  +NIL +GLC  G    A +L   M    C P+  + NT++
Sbjct: 252 MALQLWNQVISKGFXPDVQMHNILXHGLCSVGKTZXASELYFDMNXWNCAPNLVTHNTLM 311

Query: 188 QGF 190
           +GF
Sbjct: 312 EGF 314



 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 9   KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
           K N HVY   ING+    + + AI+             +  Y++LINGLC   R  EA +
Sbjct: 161 KXNTHVYNALINGLXXASKFEDAIRVFKELGTXHCSPTIVTYNTLINGLCKGERFAEAYD 220

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           L  +M+ +G     +TY+ LI    +      A+ L   +    +  ++++++++  GLC
Sbjct: 221 LVKEMLEKGWXPSXITYSLLIKGLCQDHKVEMALQLWNQVISKGFXPDVQMHNILXHGLC 280

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
            VG+ Z A +    ++     P +VT+N L+ G  K G I  A  +  ++   G  PD  
Sbjct: 281 SVGKTZXASELYFDMNXWNCAPNLVTHNTLMEGFYKXGDIRNALVIWXRILRNGLXPDII 340

Query: 182 SFNTVIQGFLVKNETDRASSFL 203
           S+N  + G    N    A  FL
Sbjct: 341 SYNITLIGLCSCNRISVAILFL 362



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           +V  ++ ++ GL     + Z + +++ M   G   +  TY  L+H   +      ++ +L
Sbjct: 58  NVASFNXMMXGLFXNGEVDZVISIWELMKESGFVEDXTTYGILVHGFCKNGYNNKSLHVL 117

Query: 99  QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
           +   +    L+   YS +I+G C+ G+ ++A   L+ +   G       YN LINGL   
Sbjct: 118 EIAXQXGGVLDAFAYSAMINGXCKXGKXDKAVSVLNGMIXSGCKXNTHVYNALINGLXXA 177

Query: 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               +A ++  ++    C P   ++NT+I G 
Sbjct: 178 SKFEDAIRVFKELGTXHCSPTIVTYNTLINGL 209



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 36  ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
           I  D  VY++++NG     R K+   L++ M  +G +  + ++N ++   +        +
Sbjct: 21  ISPDAVVYNAMLNGXFXAGRXKBCFXLWELMXXEG-SXNVASFNXMMXGLFXNGEVDZVI 79

Query: 96  ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
           ++ + ++   +  +   Y +++ G C+ G   ++   L+   + G V     Y+ +ING 
Sbjct: 80  SIWELMKESGFVEDXTTYGILVHGFCKNGYNNKSLHVLEIAXQXGGVLDAFAYSAMINGX 139

Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           CK G   +A  +L  M   GC  ++  +N +I G    ++ + A    K+
Sbjct: 140 CKXGKXDKAVSVLNGMIXSGCKXNTHVYNALINGLXXASKFEDAIRVFKE 189



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ E+ +  +   Y + I G+C+  +++ A       I KG   DV +++ L +GLC+  
Sbjct: 224 EMLEKGWXPSXITYSLLIKGLCQDHKVEMALQLWNQVISKGFXPDVQMHNILXHGLCSVG 283

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
           + + A EL+  M        LVT+N L+   ++     +A+ +   + R+    +I  Y+
Sbjct: 284 KTZXASELYFDMNXWNCAPNLVTHNTLMEGFYKXGDIRNALVIWXRILRNGLXPDIISYN 343

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
           + + GLC   R   A   L     K +VP V+T
Sbjct: 344 ITLIGLCSCNRISVAILFLXDAVTKNIVPTVIT 376



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 51  CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110
           C    +  A  ++ +M    I+ + V YN +++  +   GR      L  L   +   N+
Sbjct: 1   CESGDIBXAERVYKEMAESKISPDAVVYNAMLNGXF-XAGRXKBCFXLWELMXXEGSXNV 59

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
             ++ ++ GL   G  +Z     + + E G V    TY IL++G CK G   ++  +L  
Sbjct: 60  ASFNXMMXGLFXNGEVDZVISIWELMKESGFVEDXTTYGILVHGFCKNGYNNKSLHVLEI 119

Query: 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
             + G   D+ +++ +I G     + D+A S L
Sbjct: 120 AXQXGGVLDAFAYSAMINGXCKXGKXDKAVSVL 152


>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
 gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 42/189 (22%)

Query: 9   KGNFHVYGIRINGMCK---IREIDS--AIKK--GICLDVFVYSSLINGLCTFNRLKEAVE 61
           K +   Y I I+ +C    IRE D   A+ K  G+  D F+Y++++ G C  N+  EAV 
Sbjct: 226 KPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVR 285

Query: 62  LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
           ++ +M  +G+  +LVTYN LI                                    GL 
Sbjct: 286 IYKQMKEEGVEPDLVTYNTLIF-----------------------------------GLS 310

Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
           + GR  EA+K L  + E G  P  VTY  L+NG+C++G ++ A  LL +M+ KGC P+S 
Sbjct: 311 KCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSC 370

Query: 182 SFNTVIQGF 190
           ++NT++ GF
Sbjct: 371 TYNTLLHGF 379



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 8   FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
           FK N     + I  +C    +D AI        K    D F Y+ L+  LC         
Sbjct: 154 FKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLVKCLCKSRIFNSVY 213

Query: 61  ELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
              D+M +   I  +LVTY  LI +    +    A  L+  L+    + +  +Y+ ++ G
Sbjct: 214 SFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKG 273

Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
            C + +  EA +   Q+ E+G+ P +VTYN LI GL K G + EA KLL  M E G FPD
Sbjct: 274 YCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPD 333

Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
           + ++ +++ G   + +   A++ L++
Sbjct: 334 AVTYTSLMNGMCREGDVLGAAALLEE 359



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 40/206 (19%)

Query: 30  SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA--QGITAELVTYNPLIHDNWE 87
           S  K  +  ++ +++S +    + + L +++ L D MV     ++ +  TY+ L+  +  
Sbjct: 74  STTKAPLLDNLRLHNSFLQSYTSISTLDDSISLLDHMVKTLPSLSPDRSTYHVLLSQSCR 133

Query: 88  KQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
           +      SA  +L  +    ++ N     + I  LC  GR ++A   + + S K   P  
Sbjct: 134 EPDSSLSSAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDT 193

Query: 146 VTYNILINGLCKKGM------------------------------------IMEADKLLV 169
            TYN L+  LCK  +                                    I EAD+L+ 
Sbjct: 194 FTYNFLVKCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVA 253

Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNE 195
            +KE G  PD+  +NT+++G+ + N+
Sbjct: 254 VLKECGLKPDAFLYNTIMKGYCLLNK 279


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.139    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,963,270,713
Number of Sequences: 23463169
Number of extensions: 111461001
Number of successful extensions: 382640
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5460
Number of HSP's successfully gapped in prelim test: 3893
Number of HSP's that attempted gapping in prelim test: 285705
Number of HSP's gapped (non-prelim): 56547
length of query: 207
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 71
effective length of database: 9,168,204,383
effective search space: 650942511193
effective search space used: 650942511193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)