BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045498
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ E F+ + +Y I+G CKI ++ A+ + G+ D Y+SL+ GLC R
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
+A L MV + I ++T+ +I D + K+G+FS AM L + + R + ++ Y+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVI-DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+GLC GR +EA++ LD + KG +P VVTYN LING CK + E KL +M ++
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G D+ ++NT+IQG+ D A +
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 374
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++T + + Y ING+C +D A + KG DV Y++LING C
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM---ALLQTLERDKYELNIE 111
R+ E +LF +M +G+ + +TYN +I QG F A A + R NI
Sbjct: 329 RVDEGTKLFREMAQRGLVGDTITYNTII------QGYFQAGRPDAAQEIFSRMDSRPNIR 382
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
YS+++ GLC R E+A + + + + + TYNI+I+G+CK G + +A L +
Sbjct: 383 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442
Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
KG PD S+ T+I GF K + D++ +K
Sbjct: 443 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ Y+ +IN LC +R A+ + KM+ G ++VT + LI+ + F A
Sbjct: 99 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+ L+ +E + ++ +Y+ +IDG C++G +A + D++ G+ VTYN L+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
LC G +A +L+ M + P+ +F VI F+
Sbjct: 219 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 255
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
+ LF M GI +L +YN +I+ A++++ + + YE ++ S +I+
Sbjct: 88 VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLIN 147
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C+ R +A + ++ E G P VV YN +I+G CK G++ +A +L +M+ G
Sbjct: 148 GFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA 207
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLK 204
D+ ++N+++ G A+ ++
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMR 233
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G+ + +YNI+IN LC+ + A ++ +M + G PD + +++I GF N A
Sbjct: 99 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 200 SSFLKK 205
+ K
Sbjct: 159 IDLVSK 164
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 7/185 (3%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I IN CK + +D ++ KG+ + Y++L+ G C +L A ELF +M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V++G+ +VTY L+ + A+ + + +++ + L I +Y+++I G+C +
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
++A LS+KG+ P VVTYN++I GLCKKG + EAD L +MKE GC PD ++N +
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
Query: 187 IQGFL 191
I+ L
Sbjct: 567 IRAHL 571
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 9/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E+ K + Y I I+ +CK D A+ KGI DV YSSLI GLC +
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
+ ++ +M+ + I ++VT++ LI D + K+G+ A L + + Y+
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALI-DVFVKEGKLLEAKELYNEMITRGIAPDTITYN 354
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+IDG C+ EA + D + KG P +VTY+ILIN CK + + +L ++ K
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G P++ ++NT++ GF + + A ++
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 9/200 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNR 55
+ E + + + ING+C ++ E ID ++ G D Y ++N LC
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
A++LF KM + I A +V Y+ +I D+ K G F A++L +E + ++ YS
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVI-DSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 284
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I GLC G+W++ K L ++ + ++P VVT++ LI+ K+G ++EA +L +M +
Sbjct: 285 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 344
Query: 175 GCFPDSTSFNTVIQGFLVKN 194
G PD+ ++N++I GF +N
Sbjct: 345 GIAPDTITYNSLIDGFCKEN 364
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 7/185 (3%)
Query: 14 VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+ +NG C ++ E +D ++ D+ S+LINGLC R+ EA+ L D+M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V G + VTY P+++ + A+ L + +E + ++ YS+VID LC+ G +
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 261
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
++A +++ KG+ VVTY+ LI GLC G + K+L +M + PD +F+ +
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321
Query: 187 IQGFL 191
I F+
Sbjct: 322 IDVFV 326
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
I +GI D Y+SLI+G C N L EA ++FD MV++G ++VTY+ LI+ + +
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
M L + + N Y+ ++ G C+ G+ A++ ++ +G+ P VVTY IL
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
++GLC G + +A ++ +M++ +N +I G ++ D A S
Sbjct: 462 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCK---IRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+G CK + E D + KG D+ YS LIN C R+ + + LF ++
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
++G+ +TYN L+ + +A L Q + ++ Y +++DGLC G
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+A + +++ + + G+ YNI+I+G+C + +A L + +KG PD ++N +
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531
Query: 187 IQGFLVKNETDRASSFLKK 205
I G K A +K
Sbjct: 532 IGGLCKKGSLSEADMLFRK 550
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y + G C+ ++++A + +G+ V Y L++GLC L +A+E+F
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+KM +T + YN +IH A +L +L + ++ Y+++I GLC+
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G EA ++ E G P TYNILI ++ + +L+ +MK G DS++
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTI 598
Query: 184 NTVIQ 188
VI
Sbjct: 599 KMVID 603
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 7/186 (3%)
Query: 21 GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
G CK E++ GI D++ + +IN C +L A + + G + +T++
Sbjct: 91 GFCKGMELN-----GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 145
Query: 81 LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
L++ + +GR S A+AL+ + K ++ S +I+GLC GR EA +D++ E
Sbjct: 146 LVN-GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEY 204
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G P VTY ++N LCK G A L +M+E+ ++ VI D A
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 200 SSFLKK 205
S +
Sbjct: 265 LSLFNE 270
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 53 FNRLKEAVELFDK----------MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
FNRL AV + M GI ++ T +I+ K+ A ++L
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE + +S +++G C GR EA +D++ E P +VT + LINGLC KG +
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQ 188
EA L+ +M E G PD ++ V+
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLN 218
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ + R +Y I I+GMC ++D A KG+ DV Y+ +I GLC
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
L EA LF KM G T + TYN LI + G S++ L++ ++ + + +
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600
Query: 116 VIDGL 120
VID L
Sbjct: 601 VIDML 605
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 13/205 (6%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + I ING CK ID ++ +G+ D Y++LI G C +L A ELF
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 64 DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
+MV++ + +VTY L+ DN E + A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESE---KALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
C + ++A L KG+ PGV TYNI+I GLCKKG + EA+ L +M+E G PD
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578
Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
++N +I+ L + ++ +++
Sbjct: 579 WTYNILIRAHLGDGDATKSVKLIEE 603
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 9/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E + N YG +N MCK + A++ + I LD YS +I+GLC
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
L A LF++M +GIT ++TYN LI + GR+ A LL+ + + K N+ +S
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILI-GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 337
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ID + G+ EA + ++ +G+ P +TY LI+G CK+ + +A++++ M K
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
GC P+ +FN +I G+ N D +K
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 8 FKGNFHVYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
++ N + ING+C ++ E +D ++ G D+ ++L+NGLC + EA+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
L DKMV G VTY P+++ + AM LL+ +E +L+ YS++IDGL
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
C+ G + A +++ KG+ ++TYNILI G C G + KLL M ++ P+
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333
Query: 181 TSFNTVIQGFLVKNETDRASSFLKKNM 207
+F+ +I F VK R + L K M
Sbjct: 334 VTFSVLIDSF-VKEGKLREAEELHKEM 359
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+G CK +D A + KG ++ ++ LING C NR+ + +ELF KM
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ A+ VTYN LI E A L Q + K NI Y +++DGLC G
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
E+A + +++ + + + YNI+I+G+C + +A L + KG P ++N +
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 187 IQGFLVKNETDRASSFLKK 205
I G K A +K
Sbjct: 550 IGGLCKKGPLSEAELLFRK 568
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 7/201 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + I IN C+ R++ A IK G + +S+LINGLC R+ EA+EL
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G +L+T N L++ AM L+ + + N Y V++ +C+
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G+ A + L ++ E+ + V Y+I+I+GLCK G + A L +M+ KG + ++
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 301
Query: 184 NTVIQGFLVKNETDRASSFLK 204
N +I GF D + L+
Sbjct: 302 NILIGGFCNAGRWDDGAKLLR 322
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 73/148 (49%)
Query: 58 EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
+A++LF M+ ++ ++ L + + +AL + +E N+ S++I
Sbjct: 71 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130
Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
+ CR + A + ++ + G P +T++ LINGLC +G + EA +L+ +M E G
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 190
Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
PD + NT++ G + + A + K
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDK 218
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 42/193 (21%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
++ ++ N Y I ++G+C E + A+ K + LD+ +Y+ +I+G+C +
Sbjct: 463 EMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 522
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ +A +LF + +G+ + TYN
Sbjct: 523 KVDDAWDLFCSLPLKGVKPGVKTYN----------------------------------- 547
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++I GLC+ G EA ++ E G P TYNILI G ++ KL+ ++K
Sbjct: 548 IMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRC 607
Query: 175 GCFPDSTSFNTVI 187
G D+++ VI
Sbjct: 608 GFSVDASTIKMVI 620
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + I ING CK ID ++ +G+ D Y++LI G C +L+ A ELF
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445
Query: 64 DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
+MV++ + ++V+Y L+ DN E + A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 446 QEMVSRRVRPDIVSYKILLDGLCDNGEPE---KALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
C + ++A L KG+ P V TYNI+I GLCKKG + EAD L +M+E G P+
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562
Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
++N +I+ L + + +++ +++
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEE 587
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 42/232 (18%)
Query: 14 VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+ ING+C ++ E +D ++ G + ++L+NGLC ++ +AV L D+M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---- 122
V G VTY P++ + AM LL+ +E K +L+ YS++IDGLC+
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263
Query: 123 -------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
GRW++ K L + ++ + P VV ++ L
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
I+ K+G + EA++L +M ++G PD+ ++ ++I GF +N+ D+A+ L
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 9/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E F+ N YG + MCK + A++ + I LD YS +I+GLC
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYS 114
L A LF++M +G A+++ Y LI + GR+ A LL+ + + K ++ +S
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIR-GFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+ID + G+ EA + ++ ++G+ P VTY LI+G CK+ + +A+ +L M K
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
GC P+ +FN +I G+ N D +K
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRK 412
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+G CK ++D A + KG ++ ++ LING C N + + +ELF KM
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM 413
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ A+ VTYN LI E A L Q + + +I Y +++DGLC G
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
E+A + +++ + + + YNI+I+G+C + +A L + KG PD ++N +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533
Query: 187 IQGFLVKNETDRASSFLKK 205
I G K A +K
Sbjct: 534 IGGLCKKGSLSEADLLFRK 552
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 11/215 (5%)
Query: 1 FDLTEQ-RFKG---NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLING 49
DL +Q KG N + I IN C+ R++ A IK G D +S+LING
Sbjct: 92 LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151
Query: 50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109
LC R+ EA+EL D+MV G L+T N L++ A+ L+ + ++ N
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
Y V+ +C+ G+ A + L ++ E+ + V Y+I+I+GLCK G + A L
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271
Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
+M+ KG D + T+I+GF D + L+
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 76/146 (52%)
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
++L +M +GI L T + +I+ + A + + + + YE + +S +I+G
Sbjct: 92 LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
LC GR EA + +D++ E G P ++T N L+NGLC G + +A L+ +M E G P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
++ V++ +T A L+K
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRK 237
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 42/193 (21%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
++ +R + + Y I ++G+C E + A+ K + LD+ +Y+ +I+G+C +
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ +A +LF + +G+ ++ TYN
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYN----------------------------------- 531
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++I GLC+ G EA ++ E G P TYNILI +G ++ KL+ ++K
Sbjct: 532 IMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRC 591
Query: 175 GCFPDSTSFNTVI 187
G D+++ V+
Sbjct: 592 GFSVDASTVKMVV 604
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ L Q + R + + +S + + R +++ Q+ KG+ + T +I+IN
Sbjct: 56 AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
C+ + A + ++ + G PD+ +F+T+I G ++ A
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 9/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ E +K + Y I+ +CK + ++ A +KGI +V Y++L+NGLC +R
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
+A L M+ + IT ++TY+ L+ D + K G+ A L + + R + +I YS
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+GLC R +EA + D + KG + VV+YN LING CK + + KL +M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G ++ ++NT+IQGF + D+A F +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
+ + + + I IN C ++ A+ K G D SL+NG C NR+ +AV
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
L DKMV G ++V YN +I + + A + +ER N+ Y+ +++GLC
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
RW +A + L + +K + P V+TY+ L++ K G ++EA +L +M PD
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 182 SFNTVIQGFLVKNETDRAS 200
+++++I G + + D A+
Sbjct: 297 TYSSLINGLCLHDRIDEAN 315
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 42/203 (20%)
Query: 15 YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
Y ING+C ID A + KG DV Y++LING C R+++ ++LF +M
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357
Query: 68 AQGITAELVTYNPLIH------DNWEKQGRFS---------------------------- 93
+G+ + VTYN LI D + Q FS
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELE 417
Query: 94 -AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
A+ + + +++ + +L+I Y+ VI G+C+ G+ EEA LS KGL P +VTY ++
Sbjct: 418 KALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMM 477
Query: 153 NGLCKKGMIMEADKLLVQMKEKG 175
+GLC KG++ E + L +MK++G
Sbjct: 478 SGLCTKGLLHEVEALYTKMKQEG 500
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
D+ +++ N Y ++ K ++ A ++ I D+ YSSLINGLC +
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ EA ++FD MV++G A++V+YN LI+ + + M L + + + N Y+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G + G ++A++ Q+ G+ P + TYNIL+ GLC G + +A + M+++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
D ++ TVI+G + + A S
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLF 458
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ ++ +IN C ++ A+ + KM+ G + VT L++ + A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
++L+ + Y+ +I Y+ +ID LC+ R +A ++ KG+ P VVTY L+NG
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
LC +A +LL M +K P+ +++ ++ F VKN
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF-VKN 273
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ L++ + + + L KM GI +L T+N +I+ A+++L +
Sbjct: 88 FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE + +++G CR R +A +D++ E G P +V YN +I+ LCK +
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
+A +++ KG P+ ++ ++ G + A+ L
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%)
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L +A++LF MV +V +N L+ + + ++L + +E ++ ++
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+VI+ C + A L ++ + G P VT L+NG C++ + +A L+ +M E
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PD ++N +I + A F K+
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 8/210 (3%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E +F Y I G C+ +++DSA K KG + Y+ LI+GLC R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+ EA++LF KM + TY LI + + A+ L++ +E + NI Y++
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+ID LC ++E+AR+ L Q+ EKGL+P V+TYN LING CK+GMI +A ++ M+ +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
P++ ++N +I+G+ K+ +A L K
Sbjct: 424 LSPNTRTYNELIKGY-CKSNVHKAMGVLNK 452
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 43/241 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMC------KIREI-DSAIKKGICLDVFVYSSLINGLC--- 51
++ E K N H Y + I+ +C K RE+ ++KG+ +V Y++LING C
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 52 ----------------------TFNRL---------KEAVELFDKMVAQGITAELVTYNP 80
T+N L +A+ + +KM+ + + ++VTYN
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNS 467
Query: 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEK 139
LI D + G F + L +L D+ + + Y+ +ID LC+ R EEA D L +K
Sbjct: 468 LI-DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G+ P VV Y LI+G CK G + EA +L +M K C P+S +FN +I G + A
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 200 S 200
+
Sbjct: 587 T 587
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 6/205 (2%)
Query: 3 LTEQRFKGNFHVYGIRINGMCK------IREIDSAIKKGICLDVFVYSSLINGLCTFNRL 56
+ ++ N Y I G CK + ++ +++ + DV Y+SLI+G C
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478
Query: 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
A L M +G+ + TY +I + + A L +LE+ N+ +Y+ +
Sbjct: 479 DSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538
Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
IDG C+ G+ +EA L+++ K +P +T+N LI+GLC G + EA L +M + G
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGL 598
Query: 177 FPDSTSFNTVIQGFLVKNETDRASS 201
P ++ +I L + D A S
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYS 623
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+ +CK + + DS +KG+ +V +Y++LI+G C ++ EA + +KM
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+++ +T+N LIH A L + + + + + +++I L + G +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+ A + Q+ G P TY I C++G +++A+ ++ +M+E G PD +++++
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 187 IQGFLVKNETDRASSFLKK 205
I+G+ +T+ A LK+
Sbjct: 679 IKGYGDLGQTNFAFDVLKR 697
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 1 FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
FD EQ+ N +Y I+G CK ++D A + K + +++LI+GLC
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
+LKEA L +KMV G+ + T LIH K G F A + Q + + +
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIH-RLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
Y+ I CR GR +A + ++ E G+ P + TY+ LI G G A +L +M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 172 KEKGCFPDSTSFNTVIQGFL 191
++ GC P +F ++I+ L
Sbjct: 699 RDTGCEPSQHTFLSLIKHLL 718
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Query: 5 EQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLK 57
E ++K Y +N + + +D ++ +C +++ Y+ ++NG C ++
Sbjct: 176 ELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVE 235
Query: 58 EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS------------------------ 93
EA + K+V G+ + TY LI +++ S
Sbjct: 236 EANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295
Query: 94 -----------AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142
AM L ++ D+ + Y+++I LC R EA + ++ E G+
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355
Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
P + TY +LI+ LC + +A +LL QM EKG P+ ++N +I G+
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-----DNWEKQGRFSAMAL 97
Y++L+N L F + E +++ +M+ + + TYN +++ N E+ ++ + +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
L+ D + Y+ +I G C+ + A K +++ KG V Y LI+GLC
Sbjct: 246 EAGLDPDFF-----TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCV 300
Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
I EA L V+MK+ CFP ++ +I+ A + +K+
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKE 348
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA-QGITAELVTYNPLIHDNW 86
++ ++ + + Y LI G+C L+ A ++FD M +GI+ + +N L+
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807
Query: 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
+ + A ++ + + +E ++I GL + G E L + G +
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867
Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
+ I+I+G+ K+G++ +L M++ GC S +++ +I+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 50 LCTFNRLKE---AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY 106
LC + + E VEL +KMV +T +Y LI E A + ++R++
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 107 ELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
E V++ ++ C++ + EA K +D + G +P + + +LI GL KKG
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGT 851
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQG 189
+ + + G + D ++ +I G
Sbjct: 852 SVFQNLLQCGYYEDELAWKIIIDG 875
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--------KGICLDVFVYSSLINGLCTFN 54
+ E N Y I G+C++ + A K +GI V+++L++ C
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+ EA ++ D M+ G +L + LI ++K + ++ Q L + Y + +
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWK 870
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
++IDG+ + G E + + + + G TY++LI G
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 41/232 (17%)
Query: 14 VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
Y + I+G CK EI++A+ + + DV Y++++ LC +LK+A+E+ D+M+ +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 70 -----------------------------------GITAELVTYNPLIHDNWEKQGRFS- 93
G T ++VTYN L+ + K+GR
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV-NGICKEGRLDE 292
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ L + + N+ +++++ +C GRW +A K L + KG P VVT+NILIN
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
LC+KG++ A +L +M + GC P+S S+N ++ GF + + DRA +L++
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKI-REIDSA------IKKGICLDVFVYSSLINGLCTFN 54
D+ + N + I + MC R +D+ ++KG V ++ LIN LC
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
L A+++ +KM G ++YNPL+H +++ A+ L+ + +I Y+
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ LC+ G+ E+A + L+QLS KG P ++TYN +I+GL K G +A KLL +M+ K
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
PD+ ++++++ G + + D A F +
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 7/209 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
D+ + F + + I IN +C+ + AI + G + Y+ L++G C
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ A+E ++MV++G ++VTYN ++ + A+ +L L + Y+
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
VIDGL + G+ +A K LD++ K L P +TY+ L+ GL ++G + EA K + +
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
G P++ +FN+++ G +TDRA FL
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 10/211 (4%)
Query: 3 LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
L E R +G + Y + +NG+CK +D AIK G +V ++ ++ +C+
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
R +A +L M+ +G + +VT+N LI+ K A+ +L+ + + + N
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381
Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
Y+ ++ G C+ + + A + L+++ +G P +VTYN ++ LCK G + +A ++L Q+
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441
Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
KGC P ++NTVI G +T +A L
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ + + N Y ++G CK +++D AI+ +G D+ Y++++ LC +
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
+++AVE+ +++ ++G + L+TYN +I D K G+ A+ LL + + + YS
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVI-DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ GL R G+ +EA K + G+ P VT+N ++ GLCK A LV M +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548
Query: 175 GCFPDSTSFNTVIQGF 190
GC P+ TS+ +I+G
Sbjct: 549 GCKPNETSYTILIEGL 564
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
L+E + + MV G +++ LI A +L+ LE ++ Y++
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177
Query: 116 VIDGLCRV--------------------------------GRWEEARKKLDQLSEKGLVP 143
+I G C+ G+ ++A + LD++ ++ P
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237
Query: 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
V+TY ILI C+ + A KLL +M+++GC PD ++N ++ G + D A FL
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I G CR+G+ +A K L+ L G VP V+TYN++I+G CK G I A +L +M
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
PD ++NT+++ + +A L +
Sbjct: 201 S---PDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 21 GMCKIREIDSAIKKGICLDVF------VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
G C I++ K+G LDV + S + G NRL V K+ + G+
Sbjct: 13 GFCLIQQFHREYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLV-LVSAASKVESSGLNGR 71
Query: 75 LVTYNPLI--HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
+ L + N G +S++ LE E N + +V R G EE K
Sbjct: 72 AQKFETLSSGYSNSNGNGHYSSVNSSFALE--DVESNNHLRQMV-----RTGELEEGFKF 124
Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
L+ + G VP ++ LI G C+ G +A K+L ++ G PD ++N +I G+
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 193 KNETDRASSFLKK 205
E + A S L +
Sbjct: 185 AGEINNALSVLDR 197
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ + Y ING C +D A I K +V YS+LI G C
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWE------------------- 87
R++E +ELF +M +G+ VTY LIH DN +
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472
Query: 88 -------KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
K G+ + AM + + L+R E +I Y+++I+G+C+ G+ E+ + LS K
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G+ P V+ YN +I+G C+KG EAD LL +MKE G P+S ++NT+I+ L + + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 200 SSFLKK 205
+ +K+
Sbjct: 593 AELIKE 598
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
+ + + +Y I+G+CK + +D A+ KGI DVF YSSLI+ LC + R +A
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
L M+ + I +VT++ LI D + K+G+ A L + + + +I YS +I+
Sbjct: 313 SRLLSDMIERKINPNVVTFSALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C R +EA+ + + K P VVTY+ LI G CK + E +L +M ++G
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ ++ T+I GF + D A K+
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQ 458
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 19 INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C + I D ++ G D F +++LI+GL N+ EAV L D+MV +G
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+LVTY +++ ++ A++LL+ +E+ K E ++ +Y+ +IDGLC+ ++A
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ KG+ P V TY+ LI+ LC G +A +LL M E+ P+ +F+ +I F+
Sbjct: 280 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
D+ E++ N + I+ K ++ D IK+ I D+F YSSLING C +
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
RL EA +F+ M+++ +VTY+ LI + + M L + + + N Y+
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYT 437
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI------------- 161
+I G + + A+ Q+ G+ P ++TYNIL++GLCK G +
Sbjct: 438 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 497
Query: 162 -MEAD---------------------KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
ME D +L + KG P+ ++NT+I GF K + A
Sbjct: 498 TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557
Query: 200 SSFLKK 205
S LKK
Sbjct: 558 DSLLKK 563
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + Y I IN C+ ++ A+ K G D+ SSL+NG C R+ +AV L
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + T+ LIH + A+AL+ + + + ++ Y V++GLC+
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L ++ + + VV YN +I+GLCK + +A L +M KG PD ++
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY 296
Query: 184 NTVIQ 188
+++I
Sbjct: 297 SSLIS 301
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ L++ + N+ + + L ++M GI+ +L TY+ I+ + A+A+L +
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE +I S +++G C R +A +DQ+ E G P T+ LI+GL
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ QM ++GC PD ++ TV+ G + + D A S LKK
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKK 248
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ YS IN C ++L A+ + KM+ G ++VT + L++ + A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+AL+ + Y+ + ++ +I GL + EA +DQ+ ++G P +VTY ++NG
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
LCK+G I A LL +M++ D +NT+I G D A
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ GN Y I+G + R+ D+A + G+ ++ Y+ L++GLC
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIH---------DNWEKQGRFSAMALLQTLERDK 105
+L +A+ +F+ + + ++ TYN +I D WE L L
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE---------LFCNLSLKG 533
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
N+ Y+ +I G CR G EEA L ++ E G +P TYN LI + G +
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 166 KLLVQMKEKGCFPDSTSFNTV 186
+L+ +M+ G D+++ V
Sbjct: 594 ELIKEMRSCGFAGDASTIGLV 614
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 35/145 (24%)
Query: 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
L N L ++ +AV+LF MV +V +N L+ SA+A + +K
Sbjct: 54 LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLL----------SAVA-----KMNK 98
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
+EL I + +Q+ G+ + TY+I IN C++ + A
Sbjct: 99 FELVISLG--------------------EQMQTLGISHDLYTYSIFINCFCRRSQLSLAL 138
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
+L +M + G PD + ++++ G+
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGY 163
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 14 VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y + I+G+CK + +D+ KG + Y++LI+GLC +L +AV L ++M
Sbjct: 259 IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V+ VTY LI+ +++ A+ LL ++E Y LN +YS++I GL + G+
Sbjct: 319 VSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKA 378
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
EEA +++EKG P +V Y++L++GLC++G EA ++L +M GC P++ +++++
Sbjct: 379 EEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSL 438
Query: 187 IQGFL 191
++GF
Sbjct: 439 MKGFF 443
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 10/211 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ E+ + N H+Y + I+G+ K + + A+ +KG ++ VYS L++GLC +
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
EA E+ ++M+A G TY+ L+ ++ A+ + + +++ N YS+
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV 472
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM---K 172
+IDGLC VGR +EA ++ G+ P V Y+ +I GLC G + A KL +M +
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE 532
Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
E PD ++N ++ G ++ + RA L
Sbjct: 533 EPKSQPDVVTYNILLDGLCMQKDISRAVDLL 563
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
Query: 15 YGIRINGMCKIREIDSAIK--KGI----CL-DVFVYSSLINGLCTFNRLKEAVELFDKMV 67
+ + I +CK+R +D AI+ +G+ CL D + Y +L++GLC R+ EAV L D+M
Sbjct: 190 FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
++G + V YN LI D K+G + + L+ + N Y+ +I GLC G+
Sbjct: 250 SEGCSPSPVIYNVLI-DGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 308
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
++A L+++ +P VTY LINGL K+ +A +LL M+E+G + ++ +
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVL 368
Query: 187 IQGFLVKNETDRASSFLKK 205
I G + + + A S +K
Sbjct: 369 ISGLFKEGKAEEAMSLWRK 387
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Query: 14 VYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
YG +NG+CKI +D+A I K ++ ++++LI+G T RL +A + MV
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIPKP---EIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380
Query: 68 AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
GI ++ TYN LI+ W++ A+ +L + + N+ Y++++DG C++G+
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+EA L+++S GL P V +N LI+ CK+ I EA ++ +M KGC PD +FN++
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 187 IQGFLVKNETDRASSFLK 204
I G +E A L+
Sbjct: 501 ISGLCEVDEIKHALWLLR 518
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
+++ K N + I+ CK I A+ +KG DV+ ++SLI+GLC +
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+K A+ L M+++G+ A VTYN LI+ + A L+ + L+ Y+
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I GLCR G ++AR +++ G P ++ NILINGLC+ GM+ EA + +M +
Sbjct: 569 SLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628
Query: 175 GCFPDSTSFNTVIQGF 190
G PD +FN++I G
Sbjct: 629 GSTPDIVTFNSLINGL 644
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%)
Query: 9 KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
K + + + I+G+C++ EI A I +G+ + Y++LIN +KEA +
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
L ++MV QG + +TYN LI A +L + + RD + + +++I+GLC
Sbjct: 551 LVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
R G EEA + ++ +G P +VT+N LINGLC+ G I + + +++ +G PD+
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670
Query: 182 SFNTVIQ 188
+FNT++
Sbjct: 671 TFNTLMS 677
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
D+ + K N + Y I ++G CK+ +ID A G+ + ++ LI+ C +
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ EAVE+F +M +G ++ T+N LI E A+ LL+ + + N Y+
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+ R G +EARK ++++ +G +TYN LI GLC+ G + +A L +M
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G P + S N +I G + A F K+
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKE 624
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 49/249 (19%)
Query: 1 FDLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTF 53
+D+ ++ +G+ + C + EIDSA+ K G + +Y +LI+ L
Sbjct: 206 YDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265
Query: 54 NRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYEL 108
NR+ EA++L ++M G + T+N +I D + + L++ D
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDI-- 323
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKL--------------------------------DQL 136
Y +++GLC++GR + A+ D +
Sbjct: 324 ---TYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380
Query: 137 SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196
+ G+VP V TYN LI G K+G++ A ++L M+ KGC P+ S+ ++ GF +
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440
Query: 197 DRASSFLKK 205
D A + L +
Sbjct: 441 DEAYNVLNE 449
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 19 INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
I G+CK I+ A K +G D Y L+NGLC R+ A +LF ++
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK--- 350
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEA 129
E+V +N LIH + GR + + Y + +V Y+ +I G + G A
Sbjct: 351 -PEIVIFNTLIH-GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408
Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
+ L + KG P V +Y IL++G CK G I EA +L +M G P++ FN +I
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468
Query: 190 FLVKNETDRASSFLKK 205
F ++ A ++
Sbjct: 469 FCKEHRIPEAVEIFRE 484
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
Y+ ++ L + N K A +F M+++ I L T+ ++ SA++LL+ +
Sbjct: 185 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT 244
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ N +Y +I L + R EA + L+++ G VP T+N +I GLCK I
Sbjct: 245 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA K++ +M +G PD ++ ++ G D A +
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 3/166 (1%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
VY LI L K L +M +GI + + ++ D ++K G L
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRD-YDKAGFPGQTTRLMLE 171
Query: 102 ERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
R+ Y E + Y++V++ L + A + + + P + T+ +++ C
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN 231
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
I A LL M + GC P+S + T+I N + A L++
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
+ + + +Y I+ +CK R +D A+ KGI DVF YSSLI+ LC + R +A
Sbjct: 235 KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 294
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
L M+ + I +VT+N LI D + K+G+ A L + + + NI Y+ +I+
Sbjct: 295 SRLLSDMLERKINPNVVTFNSLI-DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 353
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C R +EA++ + K +P VVTYN LING CK +++ +L M +G
Sbjct: 354 GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ ++ T+I GF ++ D A K+
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQ 440
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 11/196 (5%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y ING CK +++ + ++G+ + Y++LI+G + A +F +M
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
V+ G+ ++TYN L+ D K G+ AM + + L++ K E +I Y+++ +G+C+ G+
Sbjct: 442 VSDGVHPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
E+ LS KG+ P V+ YN +I+G CKKG+ EA L ++MKE G PDS ++NT
Sbjct: 501 VEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNT 560
Query: 186 VIQGFLVKNETDRASS 201
+I+ L + D+A+S
Sbjct: 561 LIRAHL--RDGDKAAS 574
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ N Y ING C +D A + K DV Y++LING C
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ + +ELF M +G+ VTY LIH ++ +A + + + D NI Y+
Sbjct: 395 KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN 454
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++DGLC+ G+ E+A + L + + P + TYNI+ G+CK G + + L + K
Sbjct: 455 TLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK 514
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PD ++NT+I GF K + A + K
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 42/223 (18%)
Query: 19 INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C +I E +D ++ G D +++L++GL N+ EAV L ++MV +G
Sbjct: 142 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 201
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR--------- 122
+LVTY +I+ ++ A+ LL +E+ K E ++ +YS VID LC+
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261
Query: 123 --------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
GRW +A + L + E+ + P VVT+N LI+
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321
Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
K+G ++EA+KL +M ++ P+ ++N++I GF + + D A
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 7/195 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
D+ E++ N + I+ K ++ D I++ I ++ Y+SLING C +
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
RL EA ++F MV++ ++VTYN LI+ + + M L + + R N Y+
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G + + A+ Q+ G+ P ++TYN L++GLCK G + +A + +++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479
Query: 175 GCFPDSTSFNTVIQG 189
PD ++N + +G
Sbjct: 480 KMEPDIYTYNIMSEG 494
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
+S L++ + + + +KM G++ L TYN +I+ + A+A+L +
Sbjct: 68 FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMM 127
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ Y +I + +++G C R EA +DQ+ E G P VT+ L++GL +
Sbjct: 128 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 187
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M KGC PD ++ VI G + E D A + L K
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN +C+ ++ A+ K G + +SL+NG C NR+ EAV L
Sbjct: 99 NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + VT+ L+H GL +
Sbjct: 159 DQMVEMGYQPDTVTFTTLVH-----------------------------------GLFQH 183
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
+ EA ++++ KG P +VTY +INGLCK+G A LL +M++ D +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243
Query: 184 NTVIQGFLVKNETDRA 199
+TVI D A
Sbjct: 244 STVIDSLCKYRHVDDA 259
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
+L EAV+LF +MV +V ++ L+ K +F ++ + +E N+ Y
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLL-SAIAKMKKFDLVISFGEKMEILGVSHNLYTY 103
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+++I+ LCR + A L ++ + G P +VT N L+NG C I EA L+ QM E
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PD+ +F T++ G N+ A + +++
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVER 195
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
D++ + GN Y I+G + + D+A + G+ ++ Y++L++GLC
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
+L++A+ +F+ + + ++ TYN ++ + K G+ L +L + ++ Y
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYN-IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I G C+ G EEA ++ E G +P TYN LI + G + +L+ +M+
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Query: 174 KGCFPDSTSFNTV 186
D++++ V
Sbjct: 584 CRFAGDASTYGLV 596
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNR 55
L + + + + + Y I GMCK +++ S KG+ DV Y+++I+G C
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+EA LF KM G + TYN LI + + ++ L++ + ++ + Y L
Sbjct: 536 KEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGL 595
Query: 116 VIDGL 120
V D L
Sbjct: 596 VTDML 600
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133
E ++ N L+H ++ A+ L + + + +I +S ++ + ++ +++
Sbjct: 34 EKLSRNALLHLKLDE-----AVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFG 88
Query: 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
+++ G+ + TYNI+IN LC++ + A +L +M + G P + N+++ GF
Sbjct: 89 EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148
Query: 194 NETDRASSFLKK 205
N A + + +
Sbjct: 149 NRISEAVALVDQ 160
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 9/200 (4%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I G CK + ++ + ++G+ + Y+ LI GL A E+F +M
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
V+ G+ ++TYN L+ D K G+ AM + + L+R K E I Y+++I+G+C+ G+
Sbjct: 458 VSDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
E+ LS KG+ P VV YN +I+G C+KG EAD L +MKE G P+S +NT
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 576
Query: 186 VIQGFLVKNETDRASSFLKK 205
+I+ L + + ++ +K+
Sbjct: 577 LIRARLRDGDREASAELIKE 596
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y ING C +D A + K DV Y++LI G C + R++E +E+F +M
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ VTYN LI ++ A + + + D NI Y+ ++DGLC+ G+
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
E+A + L + P + TYNI+I G+CK G + + L + KG PD ++NT+
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 542
Query: 187 IQGFLVKNETDRASSFLKK 205
I GF K + A + K+
Sbjct: 543 ISGFCRKGSKEEADALFKE 561
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y I+G+CK + +D A+ KGI +V YSSLI+ LC + R +A L M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
+ + I ++ T++ LI D + K+G+ A L + + + +I YS +I+G C R
Sbjct: 318 IERKINPDVFTFSALI-DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+EA++ + + K P VVTYN LI G CK + E ++ +M ++G ++ ++N
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 186 VIQGFLVKNETDRASSFLKK 205
+IQG + D A K+
Sbjct: 437 LIQGLFQAGDCDMAQEIFKE 456
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 19 INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C + I A+ G + +++LI+GL N+ EA+ L D+MVA+G
Sbjct: 158 LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGC 217
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+LVTY +++ ++ A LL +E+ K E + +Y+ +IDGLC+ ++A
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 277
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ KG+ P VVTY+ LI+ LC G +A +LL M E+ PD +F+ +I F+
Sbjct: 278 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ ++ A+ K G ++ SSL+NG C R+ EAV L
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+M G VT+N LIH + AMAL+ + + ++ Y +V++GLC+
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L+++ + L PGV+ YN +I+GLCK + +A L +M+ KG P+ ++
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 184 NTVIQ 188
+++I
Sbjct: 295 SSLIS 299
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI + + YS LIN C ++L A+ + KM+ G +VT + L++ + A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+AL+ + Y+ N ++ +I GL + EA +D++ KG P +VTY +++NG
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 230
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
LCK+G A LL +M++ P +NT+I G D A + K+
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 7/192 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ GN Y I I G+ + + D A + G+ ++ Y++L++GLC
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L++A+ +F+ + + + TYN +I + L L + ++ Y+
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G CR G EEA ++ E G +P YN LI + G + +L+ +M+
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600
Query: 175 GCFPDSTSFNTV 186
G D+++ V
Sbjct: 601 GFAGDASTIGLV 612
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+AL + + + +I +S ++ + ++ +++ +Q+ G+ TY+ILIN
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 154 GLCKKGM-----------------------------------IMEADKLLVQMKEKGCFP 178
C++ I EA L+ QM G P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ +FNT+I G + N+ A + + +
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDR 211
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ + Y ING C +D A I K +V Y++LING C
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ E VELF +M +G+ VTY LIH ++ + +A + + + D NI Y+
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++DGLC+ G+ E+A + L + P + TYNI+I G+CK G + + L + K
Sbjct: 475 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 534
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PD +NT+I GF K + A + +K
Sbjct: 535 GVKPDVIIYNTMISGFCRKGLKEEADALFRK 565
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y ING CK + ID + ++G+ + Y++LI+G A +F
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
+MV+ G+ ++TYN L+ D K G+ AM + + L+R K E I Y+++I+G+C+
Sbjct: 459 KQMVSDGVHPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
G+ E+ LS KG+ P V+ YN +I+G C+KG+ EAD L +M+E G PDS +
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
+ + N +Y I+ +CK R D A+ KG+ +V YSSLI+ LC + R +A
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDA 314
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
L M+ + I +VT+N LI D + K+G+ A L + + + +I YS +I+
Sbjct: 315 SRLLSDMIERKINPNVVTFNALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C R +EA+ + + K P VVTYN LING CK I E +L +M ++G
Sbjct: 374 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ ++ T+I GF + D A K+
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQ 460
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 11 NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
N + +G RI+ + +D ++ G D +++LI+GL N+ EAV L D+MV +G
Sbjct: 163 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
LVTY +++ ++ A LL +E K E N+ +YS VID LC+ ++A
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
++ KG+ P V+TY+ LI+ LC +A +LL M E+ P+ +FN +I F
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 191 L 191
+
Sbjct: 341 V 341
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ +I A+ K G + SSL+NG C R+ +AV L
Sbjct: 119 NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + +T+ LIH + A+AL+ + + + N+ Y +V++GLC+
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L+++ + VV Y+ +I+ LCK +A L +M+ KG P+ ++
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 184 NTVIQ 188
+++I
Sbjct: 299 SSLIS 303
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 9/185 (4%)
Query: 21 GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
GM K R + S +F ++ L++ + + + L +KM GI+ L TYN
Sbjct: 75 GMVKSRPLPS---------IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125
Query: 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
LI+ + A+ALL + + YE +I S +++G C R +A +DQ+ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
P +T+ LI+GL EA L+ +M ++GC P+ ++ V+ G + + D A
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245
Query: 201 SFLKK 205
+ L K
Sbjct: 246 NLLNK 250
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI +++ Y+ LIN C +++ A+ L KM+ G +VT + L++ + A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+AL+ + Y + ++ +I GL + EA +D++ ++G P +VTY +++NG
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
LCK+G I A LL +M+ + ++TVI D A
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 114/199 (57%), Gaps = 11/199 (5%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I G CK + +D + ++G+ + Y++LI+G A +F
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCR 122
+MV+ G+ +++TY+ L+ D G+ +A+ + + L+R K E +I Y+++I+G+C+
Sbjct: 455 KQMVSDGVLPDIMTYSILL-DGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
G+ E+ LS KG+ P VVTY +++G C+KG+ EAD L +MKE+G PDS +
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573
Query: 183 FNTVIQGFLVKNETDRASS 201
+NT+I+ L + D+A+S
Sbjct: 574 YNTLIRAHL--RDGDKAAS 590
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ + Y ING C +D A I K +V Y++LI G C
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ E +ELF +M +G+ VTY LIH ++ + +A + + + D +I YS
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+++DGLC G+ E A + L + P + TYNI+I G+CK G + + L + K
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G P+ ++ T++ GF K + A + ++
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Query: 19 INGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C I A+ + G D F +++LI+GL NR EAV L D+MV +G
Sbjct: 158 LNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC 217
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+LVTY +++ ++ A++LL+ +E+ K E + +Y+ +ID LC +A
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALN 277
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ KG+ P VVTYN LI LC G +A +LL M E+ P+ +F+ +I F+
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 9/200 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y I+ +C + ++ A+ KGI +V Y+SLI LC + R +A L M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
+ + I +VT++ LI D + K+G+ A L + + + +I YS +I+G C R
Sbjct: 318 IERKINPNVVTFSALI-DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+EA+ + + K P VVTYN LI G CK + E +L +M ++G ++ ++ T
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436
Query: 186 VIQGFLVKNETDRASSFLKK 205
+I GF E D A K+
Sbjct: 437 LIHGFFQARECDNAQIVFKQ 456
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ ++ A+ K G D+ +SL+NG C NR+ +AV L
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+MV G + T+N LIH + A+AL+ + + ++ Y +V++GLC+
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L ++ + + PGVV YN +I+ LC + +A L +M KG P+ ++
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 184 NTVIQ 188
N++I+
Sbjct: 295 NSLIR 299
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
+S L++ + N+ + L ++M GI+ L TY+ LI+ + A+A+L +
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE +I + +++G C R +A + Q+ E G P T+N LI+GL +
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M KGC PD ++ V+ G + + D A S LKK
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ GN Y I+G + RE D+A + G+ D+ YS L++GLC
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+++ A+ +F+ + + ++ TYN +I + L +L + N+ Y+
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ G CR G EEA ++ E+G +P TYN LI + G + +L+ +M+
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
D+++ ++ L D+ SFLK
Sbjct: 601 RFVGDASTIG-LVTNMLHDGRLDK--SFLK 627
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ L + + + +I +S ++ + ++ +++ +Q+ G+ + TY+ILIN
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
C++ + A +L +M + G PD + N+++ GF N A S +
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
+K N +Y I+G+CK +++D+A+ K GI DV Y+SLI+GLC+ R +A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
+ M + I ++ T+N LI D K+GR S A + + R + +I YSL+I G
Sbjct: 242 RMVSCMTKREIYPDVFTFNALI-DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
LC R +EA + + KG P VVTY+ILING CK + KL +M ++G +
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 180 STSFNTVIQGFLVKNETDRASSFLKK 205
+ ++ +IQG+ + + A ++
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRR 386
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I ING CK ++++ +K +G+ + Y+ LI G C +L A E+F +M
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRM 387
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V G+ ++TYN L+H + A+ +L ++++ + +I Y+++I G+C+ G
Sbjct: 388 VFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
+A L+ +GL+P + TY ++ GL KKG+ EAD L +MKE G P+
Sbjct: 448 ADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N I +N C+ ++ A IK G + + SL+NG C +R+ +A+ +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G +V YN +I + + +A+ LL +E+D ++ Y+ +I GLC
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
GRW +A + + ++++ + P V T+N LI+ K+G + EA++ +M + PD ++
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294
Query: 184 NTVIQGFLVKNETDRA 199
+ +I G + + D A
Sbjct: 295 SLLIYGLCMYSRLDEA 310
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 92/168 (54%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
I++ + D+ YS LI GLC ++RL EA E+F MV++G ++VTY+ LI+ + +
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
M L + + N Y+++I G CR G+ A + ++ G+ P ++TYN+L
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVL 402
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
++GLC G I +A +L M++ G D ++N +I+G E A
Sbjct: 403 LHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA 450
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y + I G+C +D A + KG DV YS LING C +++ ++LF +M
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
+G+ VTY LI + + G+ + A + + + NI Y++++ GLC G+
Sbjct: 353 SQRGVVRNTVTYTILIQ-GYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
E+A L + + G+ +VTYNI+I G+CK G + +A + + +G PD ++ T
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTT 471
Query: 186 VIQGFLVKNETDRASSFLKK 205
++ G K A + +K
Sbjct: 472 MMLGLYKKGLRREADALFRK 491
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 84/160 (52%)
Query: 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
L+N C ++L A+ KM+ G +VT+ L++ + A+ + +
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
Y+ N+ +Y+ +IDGLC+ + + A L+++ + G+ P VVTYN LI+GLC G +A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+++ M ++ +PD +FN +I + + A F ++
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
D+ + + Y I I GMCK E+ A +G+ D++ Y++++ GL
Sbjct: 421 DMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480
Query: 55 RLKEAVELFDKMVAQGI 71
+EA LF KM GI
Sbjct: 481 LRREADALFRKMKEDGI 497
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
+I +S ++ + ++ +++ +Q+ G+ + T NIL+N C+ + A L
Sbjct: 80 SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFL 139
Query: 169 VQMKEKGCFPDSTSFNTVIQGF 190
+M + G P +F +++ GF
Sbjct: 140 GKMIKLGHEPSIVTFGSLLNGF 161
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 9/181 (4%)
Query: 19 INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
I G C ++ +D +K +G+ + YS L+ G C ++K A ELF +MV+ G+
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 72 TAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
+++TY L+ D G+ A+ + + L++ K +L I +Y+ +I+G+C+ G+ E+A
Sbjct: 435 LPDVMTYGILL-DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
L KG+ P V+TY ++I+GLCKKG + EA+ LL +M+E G P+ ++NT+I+
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553
Query: 191 L 191
L
Sbjct: 554 L 554
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLC---- 51
+ E+ K + Y I+ +C+ ID+AI KGI V Y+SL+ GLC
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278
Query: 52 ---------------------TFN----------RLKEAVELFDKMVAQGITAELVTYNP 80
TFN +L+EA EL+ +M+ +GI+ ++TYN
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338
Query: 81 LIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
L+ D + Q R S A +L + R+K +I ++ +I G C V R ++ K +S++
Sbjct: 339 LM-DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR 397
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
GLV VTY+IL+ G C+ G I A++L +M G PD ++ ++ G + ++A
Sbjct: 398 GLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+D ++ G DV Y+S++NG+C A++L KM + + A++ TY+ +I D+
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-DSLC 239
Query: 88 KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
+ G +A++L + +E + ++ Y+ ++ GLC+ G+W + L + + +VP V+
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299
Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
T+N+L++ K+G + EA++L +M +G P+ ++NT++ G+ ++N A++ L
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 11 NFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + I IN C+ + + +K G D +++LI GL ++ EAV L
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 181
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G ++VTYN +++ A+ LL+ +E + ++ YS +ID LCR
Sbjct: 182 DRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A ++ KG+ VVTYN L+ GLCK G + LL M + P+ +F
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301
Query: 184 NTVIQGFLVKNETDRASSFLKK 205
N ++ F+ + + A+ K+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKE 323
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ N Y I + G C+ +I A + G+ DV Y L++GLC
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L++A+E+F+ + + +V Y +I + A L +L + N+ Y+
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++I GLC+ G EA L ++ E G P TYN LI + G + + KL+ +MK
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 572
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
G D++S VI L+ E D+ SFL
Sbjct: 573 GFSADASSIKMVID-MLLSGELDK--SFL 598
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 78/156 (50%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI +++ + +IN C + A + K++ G + T+N LI + + A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+ L+ + + + ++ Y+ +++G+CR G A L ++ E+ + V TY+ +I+
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
LC+ G I A L +M+ KG ++N++++G
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 273
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)
Query: 16 GIRINGMCKIREIDSAIKKGICLDVFVYSSLING-LCTFNRLK---------EAVELFDK 65
+R + +C I S+ ++ +SS+ NG +C RL+ +A+ LF +
Sbjct: 26 SLRTDLLCTISSFFSSCERD-------FSSISNGNVCFRERLRSGIVDIKKDDAIALFQE 78
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
M+ LV ++ + + + LE + NI +++I+ CR +
Sbjct: 79 MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 138
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
A L ++ + G P T+N LI GL +G + EA L+ +M E GC PD ++N+
Sbjct: 139 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 198
Query: 186 VIQGFLVKNETDRASSFLKK 205
++ G +T A L+K
Sbjct: 199 IVNGICRSGDTSLALDLLRK 218
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
+ + N +Y I+ +CK R D A+ KG+ +V YSSLI+ LC + R +A
Sbjct: 248 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDA 307
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
L M+ + I LVT++ LI D + K+G+ A L + + + + NI YS +I+
Sbjct: 308 SRLLSDMIERKINPNLVTFSALI-DAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C + R EA++ L+ + K +P VVTYN LING CK + + +L +M ++G
Sbjct: 367 GFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVG 426
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ ++ T+I GF + D A K+
Sbjct: 427 NTVTYTTLIHGFFQARDCDNAQMVFKQ 453
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 7/188 (3%)
Query: 19 INGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C + +D ++ G D +++LI+GL N+ EAV L D+MV +G
Sbjct: 155 LNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGC 214
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+LVTY +++ ++ A+ LL +E K E N+ +YS VID LC+ ++A
Sbjct: 215 QPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 274
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ KG+ P V+TY+ LI+ LC G +A +LL M E+ P+ +F+ +I F+
Sbjct: 275 LFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334
Query: 192 VKNETDRA 199
K + +A
Sbjct: 335 KKGKLVKA 342
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 7/195 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
D+ E++ N + I+ K ++ A IK+ I ++F YSSLING C +
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
RL EA ++ + M+ + +VTYN LI+ + + M L + + + N Y+
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYT 432
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G + + A+ Q+ G+ P ++TYNIL++GLCK G + +A + ++
Sbjct: 433 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492
Query: 175 GCFPDSTSFNTVIQG 189
PD ++N +I+G
Sbjct: 493 TMEPDIYTYNIMIEG 507
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ N Y ING C + + A I+K +V Y++LING C
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ + +ELF +M +G+ VTY LIH ++ + +A + + + NI Y+
Sbjct: 408 RVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 467
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+++DGLC+ G+ +A + L + P + TYNI+I G+CK G
Sbjct: 468 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
+S L++ + N+ + +KM GI+ L TYN LI+ A+ALL +
Sbjct: 81 FSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMM 140
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE +I + +++G C R +A +DQ+ E G P VT+ LI+GL
Sbjct: 141 KLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKAS 200
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M ++GC PD ++ V+ G + +TD A + L K
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y ING CK + +D + ++G+ + Y++LI+G A +F
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
+MV+ G+ ++TYN L+ D K G+ + AM + + L+R E +I Y+++I+G+C+
Sbjct: 452 KQMVSVGVHPNILTYNILL-DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510
Query: 123 VGRWE 127
G+W+
Sbjct: 511 AGKWK 515
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 42/196 (21%)
Query: 11 NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ + A +K G D+ +SL+NG C NR+ +AV L
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALV 171
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + VT+ LIH GL
Sbjct: 172 DQMVEMGYKPDTVTFTTLIH-----------------------------------GLFLH 196
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
+ EA +D++ ++G P +VTY ++NGLCK+G A LL +M+ + +
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 184 NTVIQGFLVKNETDRA 199
+TVI D A
Sbjct: 257 STVIDSLCKYRHEDDA 272
Score = 37.0 bits (84), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 35/147 (23%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI- 152
A+ L + + + +I +S ++ + ++ +++ +++ G+ + TYNILI
Sbjct: 62 AIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILIN 121
Query: 153 ----------------------------------NGLCKKGMIMEADKLLVQMKEKGCFP 178
NG C I +A L+ QM E G P
Sbjct: 122 CFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKP 181
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
D+ +F T+I G + N+ A + + +
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDR 208
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 11/199 (5%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I G CK + ++ + ++G+ + Y++LI GL A ++F
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
KMV+ G+ +++TY+ L+ D K G+ A+ + + L++ K E +I Y+++I+G+C+
Sbjct: 454 KKMVSDGVPPDIITYSILL-DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
G+ E+ LS KG+ P V+ Y +I+G C+KG+ EAD L +MKE G P+S +
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572
Query: 183 FNTVIQGFLVKNETDRASS 201
+NT+I+ L + D+A+S
Sbjct: 573 YNTLIRARL--RDGDKAAS 589
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ + Y ING C +D A I K +V Y++LI G C
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R++E +ELF +M +G+ VTYN LI ++ A + + + D +I YS
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+++DGLC+ G+ E+A + L + + P + TYNI+I G+CK G + + L + K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G P+ + T+I GF K + A + ++
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFRE 560
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 42/239 (17%)
Query: 9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
+ + YG +NG+CK +ID A+ K I DV +Y+++I+ LC + + +A+
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 62 LFDKMVAQGITAELVTYNPLI-----HDNWEKQGR----------------FSAM----- 95
LF +M +GI +VTYN LI + W R FSA+
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 336
Query: 96 ---------ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
L + + + +I YS +I+G C R +EA+ + + K P VV
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 396
Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
TYN LI G CK + E +L +M ++G ++ ++NT+IQG + D A KK
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Query: 19 INGMCKIREIDSAIKKGICLDVFV---------YSSLINGLCTFNRLKEAVELFDKMVAQ 69
+NG C + I A+ + +FV +++LI+GL N+ EAV L D+MVA+
Sbjct: 157 LNGYCHGKRISEAV--ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR 214
Query: 70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
G +L TY +++ ++ A++LL+ +E+ K E ++ +Y+ +ID LC +A
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274
Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
++ KG+ P VVTYN LI LC G +A +LL M E+ P+ +F+ +I
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334
Query: 190 FL 191
F+
Sbjct: 335 FV 336
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
ID + +G D+F Y +++NGLC + A+ L KM I A++V Y +I
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 267
Query: 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
+ A+ L ++ N+ Y+ +I LC GRW +A + L + E+ + P VVT
Sbjct: 268 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327
Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
++ LI+ K+G ++EA+KL +M ++ PD +++++I GF + + D A
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 7/189 (3%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
R + + Y I IN C+ ++ A+ K G D+ SSL+NG C R+ EA
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
V L D+M VT+N LIH + A+AL+ + + ++ Y V++G
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 229
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
LC+ G + A L ++ + + VV Y +I+ LC + +A L +M KG P+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289
Query: 180 STSFNTVIQ 188
++N++I+
Sbjct: 290 VVTYNSLIR 298
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 7/194 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ GN Y I G+ + + D A + G+ D+ YS L++GLC +
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L++A+ +F+ + + ++ TYN +I + L +L + N+ +Y+
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 539
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G CR G EEA ++ E G +P TYN LI + G + +L+ +M+
Sbjct: 540 TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC 599
Query: 175 GCFPDSTSFNTVIQ 188
G D+++ + VI
Sbjct: 600 GFVGDASTISMVIN 613
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ L++ + N+ + L ++M I+ +L +YN LI+ + A+A+L +
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE +I S +++G C R EA +DQ+ P VT+N LI+GL
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M +GC PD ++ TV+ G + + D A S LKK
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 35/136 (25%)
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L +AV+LF +MV +V +N L+ SA+A + +K++L I +
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLL----------SAIA-----KMNKFDLVISLGE 104
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
R + R D + +YNILIN C++ + A +L +M +
Sbjct: 105 ----------RMQNLRISYD----------LYSYNILINCFCRRSQLPLALAVLGKMMKL 144
Query: 175 GCFPDSTSFNTVIQGF 190
G PD + ++++ G+
Sbjct: 145 GYEPDIVTLSSLLNGY 160
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 110/198 (55%), Gaps = 12/198 (6%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y ING CK + ++ + ++G+ + Y+++I G A +F
Sbjct: 397 NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVF 456
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+MV+ + +++TY+ L+H +A+ + + L++ + ELNI +Y+ +I+G+C+
Sbjct: 457 KQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKA 516
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G+ EA LS K P VVTYN +I+GLC K ++ EAD L +MKE G P+S ++
Sbjct: 517 GKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573
Query: 184 NTVIQGFLVKNETDRASS 201
NT+I+ L + DRA+S
Sbjct: 574 NTLIRANL--RDCDRAAS 589
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
R K N ++ I+ +CK R ++ A+ KGI +V Y+SLIN LC + R +A
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDA 312
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
L M+ + I +VT+N LI D + K+G+ A L + + + + + Y+L+I+
Sbjct: 313 SRLLSNMLEKKINPNVVTFNALI-DAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C R +EA++ + K +P + TYN LING CK + + +L +M ++G
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG 431
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
++ ++ T+IQGF + D A K+
Sbjct: 432 NTVTYTTIIQGFFQAGDCDSAQMVFKQ 458
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Query: 19 INGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C + I D ++ G D F +++LI+GL N+ EAV L D+MV +G
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+LVTY +++ ++ A+ LL +E + + N+ +++ +ID LC+ E A
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVD 279
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ KG+ P VVTYN LIN LC G +A +LL M EK P+ +FN +I F
Sbjct: 280 LFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFF 339
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y + ING C +D A + K ++ Y++LING C R+++ VELF +M
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ VTY +I ++ SA + + + ++ +I YS+++ GLC G+
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKL 484
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+ A L + + + YN +I G+CK G + EA L + K PD ++NT+
Sbjct: 485 DTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTM 541
Query: 187 IQGFLVKNETDRASSFLKK 205
I G K A +K
Sbjct: 542 ISGLCSKRLLQEADDLFRK 560
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ L++ + N+ + + L ++M GI+ +L TY+ I+ + A+A+L +
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ YE +I S +++G C R +A +DQ+ E G P T+ LI+GL
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ QM ++GC PD ++ TV+ G + + D A + L K
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNK 248
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ YS IN C ++L A+ + KM+ G ++VT + L++ + A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+AL+ + Y+ + ++ +I GL + EA +DQ+ ++G P +VTY ++NG
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
LCK+G I A LL +M+ + FNT+I
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSL 268
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSA----IKKGICLDVFVYSSLINGLCTFNRLKE 58
L + + N +Y I GMCK ++ A I DV Y+++I+GLC+ L+E
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQE 553
Query: 59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
A +LF KM G TYN LI N R ++ L++ + + + SLV +
Sbjct: 554 ADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTN 613
Query: 119 GLCRVGRWEEA 129
L GR +++
Sbjct: 614 ML-HDGRLDKS 623
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 35/145 (24%)
Query: 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
L N L ++ +AV+LF MV +V +N L+ SA+A + +K
Sbjct: 54 LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLL----------SAVA-----KMNK 98
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
+EL I + +Q+ G+ + TY+I IN C++ + A
Sbjct: 99 FELVISLG--------------------EQMQTLGISHDLYTYSIFINCFCRRSQLSLAL 138
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
+L +M + G PD + ++++ G+
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGY 163
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 8/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ E N + I I+G K + ++K + + +V Y+SLINGLC
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ EA+ + DKMV+ G+ L+TYN LI+ + A+ + +++ +Y+
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ID C++G+ ++ +++ +G+VP V TYN LI GLC+ G I A KL Q+ K
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK 465
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PD +F+ +++G+ K E+ +A+ LK+
Sbjct: 466 G-LPDLVTFHILMEGYCRKGESRKAAMLLKE 495
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 115/245 (46%), Gaps = 44/245 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMC---KIREI----DSAIKKGICLDVFVYSSLINGLCTFN 54
++ +Q K N Y ING+C KI E D + G+ ++ Y++LING C +
Sbjct: 321 EMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKND 380
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
LKEA+++F + QG YN LI D + K G+ AL + +ER+ ++ Y
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLI-DAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLV------------------------------- 142
+ +I GLCR G E A+K DQL+ KGL
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 143 ---PGVVTYNILINGLCKKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGFLVKNETDR 198
P +TYNI++ G CK+G + A + QM KE+ + S+N ++QG+ K + +
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559
Query: 199 ASSFL 203
A+ L
Sbjct: 560 ANMLL 564
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 20/217 (9%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ ++ + N + + IN +CK +++ A G +V Y++LI+G C
Sbjct: 213 EMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG 272
Query: 55 ---RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111
++ +A + +MV ++ L T+N LI W+ +M + + + + N+
Sbjct: 273 GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVI 332
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
Y+ +I+GLC G+ EA D++ G+ P ++TYN LING CK M+ EA + +
Sbjct: 333 SYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392
Query: 172 KEKGCFPDSTSFNTVI----------QGFLVKNETDR 198
K +G P + +N +I GF +K E +R
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y + I+ CK+ +ID ++GI DV Y+ LI GLC ++ A +LFD++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
++G+ +LVT++ L+ K A LL+ + + + Y++V+ G C+ G
Sbjct: 463 TSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521
Query: 127 EEARKKLDQLS-EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ A Q+ E+ L V +YN+L+ G +KG + +A+ LL +M EKG P+ ++
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581
Query: 186 VI-----QGFL 191
V QGF+
Sbjct: 582 VKEEMVDQGFV 592
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ + ++ N VY I+G+CK E++ A+ KKG+ DV Y++L+ GLC R
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
+A + M+ + I ++VT+ LI D + KQG A L + + + + N Y+
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALI-DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+GLC GR +A+K D ++ KG P VVTYN LI+G CK M+ E KL +M +
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345
Query: 175 GCFPDSTSFNTVIQGF 190
G D ++NT+I G+
Sbjct: 346 GFNADIFTYNTLIHGY 361
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I+G CK R +D +K +G D+F Y++LI+G C +L+ A+++F
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
MV++ +T +++T+ L+H SA+ + + + I Y+++I GLC+
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+ E+A + +L +G+ P TY I+I GLCK G EAD+L+ +MKE+G
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 8/213 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFN 54
++ + N Y ING+C + D KG +V Y++LI+G C F
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+ E ++LF +M +G A++ TYN LIH + A+ + + + +I +
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+++ GLC G E A K D + E G+V YNI+I+GLCK + +A +L ++ +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
G PD+ ++ +I G L KN R + L + M
Sbjct: 451 GVKPDARTYTIMILG-LCKNGPRREADELIRRM 482
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ ++ LI+ C +RL A+ + KM+ G +VT+ L+H A
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
+L+ + + YE N+ VY+ +IDGLC+ G A + L+++ +KGL VVTYN L+ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
LC G +A ++L M ++ PD +F +I F+ + D A K+
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 44/223 (19%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + + I I+ C+ + A+ K G + + SL++G C NR+ +A L
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
MV G +V YN LI D K G + A+ LL +E+ ++ Y+ ++ GLC
Sbjct: 165 ILMVKSGYEPNVVVYNTLI-DGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223
Query: 123 VGRWEEARKKLDQLSEKGLVPGV-----------------------------------VT 147
GRW +A + L + ++ + P V VT
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283
Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
YN +INGLC G + +A K M KGCFP+ ++NT+I GF
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTL 101
++ L+ R + + KM GI+ +L ++ LIH + + R S A+++L +
Sbjct: 74 FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH-CFCRCSRLSFALSVLGKM 132
Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
+ YE +I + ++ G C V R +A + + + G P VV YN LI+GLCK G +
Sbjct: 133 MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGEL 192
Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
A +LL +M++KG D ++NT++ G A+ L+ M
Sbjct: 193 NIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I I+G+CK +++ A + +G+ D Y+ +I GLC +EA EL +M
Sbjct: 423 AYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRM 482
Query: 67 VAQGITAEL 75
+GI ++
Sbjct: 483 KEEGIICQM 491
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 8 FKGNFHVYGIRINGMCK---IREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAV 60
+ N Y + ING+C+ ++E+ + ++G LD Y++LI G C +A+
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
+ +M+ G+T ++TY LIH + AM L + N Y+ ++DG
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
+ G EA + L ++++ G P VVTYN LING C G + +A +L MKEKG PD
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 181 TSFNTVIQGFLVKNETDRA 199
S++TV+ GF + D A
Sbjct: 451 VSYSTVLSGFCRSYDVDEA 469
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ E + N Y I I G C ID A+ KG +V Y++LI+G C
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVY 113
++ + +L M +G+ L++YN +I + ++GR ++ + T + R Y L+ Y
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVI-NGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I G C+ G + +A ++ GL P V+TY LI+ +CK G + A + L QM+
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+G P+ ++ T++ GF K + A L++
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 1 FDLTEQRFKG---NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGL 50
F LTE +G + Y I G CK A+ + G+ V Y+SLI+ +
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355
Query: 51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELN 109
C + A+E D+M +G+ TY L+ D + ++G + A +L+ + + + +
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV-DGFSQKGYMNEAYRVLREMNDNGFSPS 414
Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
+ Y+ +I+G C G+ E+A L+ + EKGL P VV+Y+ +++G C+ + EA ++
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474
Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+M EKG PD+ +++++IQGF + T A
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
D+ E+ + Y ++G C+ ++D A++ KGI D YSSLI G C
Sbjct: 440 DMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQR 499
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R KEA +L+++M+ G+ + TY LI+ + A+ L + ++ YS
Sbjct: 500 RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYS 559
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---------------GLCKKG 159
++I+GL + R EA++ L +L + VP VTY+ LI G C KG
Sbjct: 560 VLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKG 619
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
M+ EAD++ M K PD T++N +I G + +A + K+
Sbjct: 620 MMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 106/194 (54%), Gaps = 7/194 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
++ + F + Y ING C +++ AI +KG+ DV YS++++G C
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+ EA+ + +MV +GI + +TY+ LI E++ A L + + R + Y+
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+ C G E+A + +++ EKG++P VVTY++LINGL K+ EA +LL+++ +
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 175 GCFPDSTSFNTVIQ 188
P +++T+I+
Sbjct: 585 ESVPSDVTYHTLIE 598
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+ MCK ++ A++ +G+C + Y++L++G + EA + +M
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
G + +VTYN LI+ + A+A+L+ ++ ++ YS V+ G CR
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+EA + ++ EKG+ P +TY+ LI G C++ EA L +M G PD ++ +
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526
Query: 187 IQGFLVKNETDRA 199
I + ++ + ++A
Sbjct: 527 INAYCMEGDLEKA 539
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 25 IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
+RE++ G V Y++LING C ++++A+ + + M +G++ ++V+Y+ ++
Sbjct: 403 LREMND---NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
A+ + + + + + YS +I G C R +EA +++ GL P
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
TY LIN C +G + +A +L +M EKG PD +++ +I G ++ T A L
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 205 K 205
K
Sbjct: 580 K 580
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ E+ K + Y I G C+ R A ++ G+ D F Y++LIN C
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYELNIEVY 113
L++A++L ++MV +G+ ++VTY+ LI+ N + + R + LL+ + ++ +
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYH 594
Query: 114 SLV--------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+L+ I G C G EA + + + K P YNI+I+G C+ G
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAG 654
Query: 160 MIMEADKLLVQMKEKG 175
I +A L +M + G
Sbjct: 655 DIRKAYTLYKEMVKSG 670
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEKGLVPGVVTYNILI 152
A++++ + + + Y+ V+D R R A ++ E + P V TYNILI
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212
Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
G C G I A L +M+ KGC P+ ++NT+I G+
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y IN C +++ A ++KG+ DV YS LINGL +R +EA L K+
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Query: 67 VAQGITAELVTYNPLIHD--NWEKQGRFS-------------AMALLQTLERDKYELNIE 111
+ VTY+ LI + N E + S A + +++ ++ +
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
Y+++I G CR G +A ++ + G + VT L+ L K+G + E + ++V +
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
+ E+ + + Y + I +C ID A I +G +V Y+ LI+GLC +
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
++EA + KMV I ++TYN LI + + K GR A LL +E+ + N+ ++
Sbjct: 352 IEEANGVCRKMVKDRIFPSVITYNALI-NGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+++GLCRVG+ +A L ++ + GL P +V+YN+LI+GLC++G + A KLL M
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN-- 468
Query: 175 GCF---PDSTSFNTVIQGFLVKNETDRASSFL 203
CF PD +F +I F + + D AS+FL
Sbjct: 469 -CFDIEPDCLTFTAIINAFCKQGKADVASAFL 499
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 89/163 (54%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
YS LI+GLC RL+EA L D+M +G TY LI ++ A L +
Sbjct: 269 YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMI 328
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ N+ Y+++IDGLCR G+ EEA ++ + + P V+TYN LING CK G ++
Sbjct: 329 PRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVV 388
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
A +LL M+++ C P+ +FN +++G + +A LK+
Sbjct: 389 PAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Query: 19 INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
IN CK + D A ++KGI LD ++LI+G+C + ++A+ + + +V I
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRI 542
Query: 72 TAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
+ N +I D K + +A+L + + ++ Y+ ++DGL R G +
Sbjct: 543 LTTPHSLN-VILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
+ L+ + G +P V Y I+INGLC+ G + EA+KLL M++ G P+ ++ +++G+
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661
Query: 191 LVKNETDRA 199
+ + DRA
Sbjct: 662 VNNGKLDRA 670
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 9 KGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVE 61
K N H Y + I+G+C+ +I+ A +K I V Y++LING C R+ A E
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
L M + + T+N L+ + A+ LL+ + + +I Y+++IDGLC
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
R G A K L ++ + P +T+ +IN CK+G A L M KG D
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512
Query: 182 SFNTVIQG 189
+ T+I G
Sbjct: 513 TGTTLIDG 520
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
Query: 15 YGIRINGMCKIREIDSAIK---KGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMV 67
Y + I+G+C+ +++A K C D+ ++++IN C + A M+
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503
Query: 68 AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+GI+ + VT LI D K G+ A+ +L+TL + + ++++D L + +
Sbjct: 504 RKGISLDEVTGTTLI-DGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKV 562
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+E L ++++ GLVP VVTY L++GL + G I + ++L MK GC P+ + +
Sbjct: 563 KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTII 622
Query: 187 IQGFLVKNETDRASSFL 203
I G + A L
Sbjct: 623 INGLCQFGRVEEAEKLL 639
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 62/237 (26%)
Query: 19 INGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVT 77
I G +I E+ +K CL +V+ Y+ +INGLC F R++EA +L M G++ VT
Sbjct: 597 ITGSFRILEL---MKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653
Query: 78 YNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKK 132
Y ++ + G+ A+ ++ + YELN +YS ++ G + EE+
Sbjct: 654 YTVMVK-GYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVS 712
Query: 133 LDQLSEK----------------GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
L E G + G+ + L+ LCK+G E++ L+ + E+G
Sbjct: 713 DIALRETDPECINELISVVEQLGGCISGLCIF--LVTRLCKEGRTDESNDLVQNVLERGV 770
Query: 177 F----------------------------------PDSTSFNTVIQGFLVKNETDRA 199
F P SF VIQG + + +RA
Sbjct: 771 FLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERA 827
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 36/144 (25%)
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--------- 142
F A + +E D + + + Y +++ LC+ G E A + ++ + G V
Sbjct: 177 FLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSL 236
Query: 143 ---------------------------PGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
P V+Y+ILI+GLC+ G + EA L QM EKG
Sbjct: 237 LLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG 296
Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
C P + ++ +I+ + D+A
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKA 320
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
+ LN YS ++ L ++ A ++ G V G++ Y ++N LCK G A+
Sbjct: 156 FRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAE 215
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGF 190
+ ++ + G DS +++ GF
Sbjct: 216 MFMSKILKIGFVLDSHIGTSLLLGF 240
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 21 GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
GM +REI ++G+ + Y++LI+G C + L A +LF +M++ G+ + +T N
Sbjct: 451 GMQLLREIS---RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507
Query: 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
L++ E + A+ L + ++ K +L+ Y+++I G+C+ + +EA L G
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567
Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+ P V TYN++I+G C K I +A+ L +MK+ G PD++++NT+I+G L E D++
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%)
Query: 14 VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+ ING+C ++ E ++ + KG+ +DV Y +++NG+C K A+ L KM
Sbjct: 228 TFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
I ++V Y+ +I D K G S A L + N+ Y+ +IDG C GR
Sbjct: 288 EETHIKPDVVIYSAII-DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
W +A++ L + E+ + P V+T+N LI+ K+G + EA+KL +M + FPD+ ++N+
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 186 VIQGFLVKNETDRA 199
+I GF N D A
Sbjct: 407 MIYGFCKHNRFDDA 420
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 91/161 (56%)
Query: 29 DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
D ++ G+ V +++LINGLC R+ EA L +KMV +G+ ++VTY +++ +
Sbjct: 215 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274
Query: 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
SA+ LL +E + ++ +YS +ID LC+ G +A+ ++ EKG+ P V TY
Sbjct: 275 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 334
Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
N +I+G C G +A +LL M E+ PD +FN +I
Sbjct: 335 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 375
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%)
Query: 6 QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
+R N + + I I C ++ ++ K G DV +++L++GLC +R+ E
Sbjct: 135 RRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISE 194
Query: 59 A---------------VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
A V LFD+MV G+T ++T+N LI+ + A AL+ +
Sbjct: 195 ALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVG 254
Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
+++ Y +++G+C++G + A L ++ E + P VV Y+ +I+ LCK G +
Sbjct: 255 KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD 314
Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190
A L +M EKG P+ ++N +I GF
Sbjct: 315 AQYLFSEMLEKGIAPNVFTYNCMIDGF 341
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
+ E K + +Y I+ +CK A ++KGI +VF Y+ +I+G C+F R
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+A L M+ + I +++T+N LI + ++ F A L + + Y+
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+I G C+ R+++A+ D ++ P VVT+N +I+ C+ + E +LL ++ +G
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462
Query: 176 CFPDSTSFNTVIQGF 190
++T++NT+I GF
Sbjct: 463 LVANTTTYNTLIHGF 477
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95
I L+++ ++ LI C ++L ++ F K+ G ++VT+N L+H + A+
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196
Query: 96 ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155
AL + +E L EA DQ+ E GL P V+T+N LINGL
Sbjct: 197 ALFGYM--------VETGFL------------EAVALFDQMVEIGLTPVVITFNTLINGL 236
Query: 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
C +G ++EA L+ +M KG D ++ T++ G +T A + L K
Sbjct: 237 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105
L +G F L +A++ FD MV V N +I A++L + +E +
Sbjct: 77 LKSGSHYFKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRR 136
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI---- 161
LNI ++++I C + + +L++ G P VVT+N L++GLC + I
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196
Query: 162 -----------MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+EA L QM E G P +FNT+I G ++ A++ + K
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNK 251
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 113/199 (56%), Gaps = 11/199 (5%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ Y I G CK + ++ + +G+ D Y++LI GL A ++F
Sbjct: 324 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 383
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
+MV+ G+ +++TY+ L+ D G+ A+ + +++ + +L+I +Y+ +I+G+C+
Sbjct: 384 KQMVSDGVPPDIMTYSILL-DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
G+ ++ LS KG+ P VVTYN +I+GLC K ++ EA LL +MKE G PDS +
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 502
Query: 183 FNTVIQGFLVKNETDRASS 201
+NT+I+ L + D+A+S
Sbjct: 503 YNTLIRAHL--RDGDKAAS 519
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 9/196 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ ++ + N YG+ +NG+CK +ID A I DV +++++I+ LC +
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
+ +A+ LF +M +GI +VTY+ LI GR+S A LL + K N+ ++
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLI-SCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 259
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+ID + G++ EA K D + ++ + P + TYN LING C + +A ++ M K
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319
Query: 175 GCFPDSTSFNTVIQGF 190
CFPD ++NT+I+GF
Sbjct: 320 DCFPDLDTYNTLIKGF 335
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 94/172 (54%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+D +++G ++ Y ++NGLC + A L +KM A I A++V +N +I +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
+ A+ L + +E N+ YS +I LC GRW +A + L + EK + P +VT
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257
Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+N LI+ K+G +EA+KL M ++ PD ++N++I GF + + D+A
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 2/181 (1%)
Query: 11 NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
N + +G RI+ + +D ++ G D +++LI+GL N+ EAV L D+MV +G
Sbjct: 88 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145
Query: 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
LVTY +++ ++ A LL +E K E ++ +++ +ID LC+ ++A
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
++ KG+ P VVTY+ LI+ LC G +A +LL M EK P+ +FN +I F
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265
Query: 191 L 191
+
Sbjct: 266 V 266
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ +I A+ K G + SSL+NG C R+ +AV L
Sbjct: 44 NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 103
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + +T+ LIH + A+AL+ + + + N+ Y +V++GLC+
Sbjct: 104 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 163
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L+++ + VV +N +I+ LCK + +A L +M+ KG P+ ++
Sbjct: 164 GDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 223
Query: 184 NTVIQGFLVKNETDRASSFL 203
+++I AS L
Sbjct: 224 SSLISCLCSYGRWSDASQLL 243
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
+F ++ L++ + + + L +KM GI+ L TYN LI+ + A+ALL
Sbjct: 10 IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69
Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+ + YE +I S +++G C R +A +DQ+ E G P +T+ LI+GL
Sbjct: 70 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M ++GC P+ ++ V+ G + + D A + L K
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 175
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++ + G+ Y I G+ + D+A + G+ D+ YS L++GLC
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L++A+E+FD M I ++ Y +I + L +L + N+ Y+
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I GLC +EA L ++ E G +P TYN LI + G + +L+ +M+
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 529
Query: 175 GCFPDSTSFNTV 186
D+++ V
Sbjct: 530 RFVGDASTIGLV 541
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 9/207 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEA 59
+ + + ++ I+ +CK R +D A+ KGI +V YSSLI+ LC++ R +A
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVID 118
+L M+ + I LVT+N LI D + K+G+F A L + + + +I Y+ +++
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALI-DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C R ++A++ + + K P VVTYN LI G CK + + +L +M +G
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
D+ ++ T+IQG + D A K+
Sbjct: 434 DTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 44/242 (18%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
D+ ++ + Y +NG C +D A + K DV Y++LI G C
Sbjct: 355 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 414
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWEK------------------ 88
R+++ ELF +M +G+ + VTY LI DN +K
Sbjct: 415 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 474
Query: 89 --------QGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
G+ A+ + +++ + +L+I +Y+ +I+G+C+ G+ ++ LS K
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G+ P VVTYN +I+GLC K ++ EA LL +MKE G P+S ++NT+I+ L + D+A
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL--RDGDKA 592
Query: 200 SS 201
+S
Sbjct: 593 AS 594
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Query: 11 NFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
N + +G RI+ + +D ++ G D +++LI+GL N+ EAV L D+MV +G
Sbjct: 163 NGYCHGKRISDAVAL--VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
LVTY +++ ++ A+ LL +E K E ++ +++ +ID LC+ ++A
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
++ KG+ P VVTY+ LI+ LC G +A +LL M EK P+ +FN +I F
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Query: 191 L 191
+
Sbjct: 341 V 341
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+D +++G ++ Y ++NGLC A+ L +KM A I A++V +N +I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Query: 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
+ A+ L + +E N+ YS +I LC GRW +A + L + EK + P +VT
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332
Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+N LI+ K+G +EA+KL M ++ PD ++N+++ GF + + D+A
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Query: 12 FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFD 64
+ Y I IN C+ +I A+ K G + SSL+NG C R+ +AV L D
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
+MV G + +T+ LIH + A+AL+ + + + N+ Y +V++GLC+ G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
+ A L+++ + VV +N +I+ LCK + +A L +M+ KG P+ +++
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299
Query: 185 TVIQGFLVKNETDRASSFL 203
++I AS L
Sbjct: 300 SLISCLCSYGRWSDASQLL 318
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 21 GMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80
GM K R + S ++ ++ L++ + + + L +KM I L TYN
Sbjct: 75 GMVKSRPLPSIVE---------FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140
LI+ + A+ALL + + YE +I S +++G C R +A +DQ+ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
P +T+ LI+GL EA L+ +M ++GC P+ ++ V+ G + +TD A
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 201 SFLKK 205
+ L K
Sbjct: 246 NLLNK 250
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 19 INGMCKIREIDSAIKKG-------ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
++ + K+++ D I G I ++ Y+ LIN C +++ A+ L KM+ G
Sbjct: 92 LSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY 151
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+VT + L++ + A+AL+ + Y + ++ +I GL + EA
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
+D++ ++G P +VTY +++NGLCK+G A LL +M+ D FNT+I
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 192 VKNETDRASSFLKK 205
D A + K+
Sbjct: 272 KYRHVDDALNLFKE 285
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++ + G+ Y I G+ + D+A + G+ D+ YS L++GLC
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L++A+E+FD M I ++ Y +I + L +L + N+ Y+
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I GLC +EA L ++ E G +P TYN LI + G + +L+ +M+
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 604
Query: 175 GCFPDSTSFNTV 186
D+++ V
Sbjct: 605 RFVGDASTIGLV 616
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 9/183 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I G CK + ++ +K +G+ D F Y++LI+G C +L A ++F++M
Sbjct: 326 TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 385
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
V G++ ++VTYN L+ D G+ A+ +++ L++ + +++I Y+++I GLCR +
Sbjct: 386 VDCGVSPDIVTYNILL-DCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDK 444
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+EA L+ KG+ P + Y +I+GLC+KG+ EADKL +MKE G P ++
Sbjct: 445 LKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDE 504
Query: 186 VIQ 188
++
Sbjct: 505 TLR 507
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
F N +Y ING+CK R++++A+ KKGI D Y++LI+GL R +A
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
L MV + I ++ + LI D + K+G A L + + R N+ Y+ +I+G
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI-DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
C G +A+ D + KG P VVTYN LI G CK + + KL +M +G D
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358
Query: 180 STSFNTVIQGF 190
+ ++NT+I G+
Sbjct: 359 AFTYNTLIHGY 369
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 37/195 (18%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA----------------------- 68
+K G + SL+NG C NR +EAV L D M
Sbjct: 141 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 200
Query: 69 ------------QGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSL 115
+GI A+ VTYN LI GR++ A LL+ + + K + N+ ++
Sbjct: 201 NNALEVFYCMEKKGIRADAVTYNTLI-SGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+ID + G EAR ++ + +VP V TYN LING C G + +A + M KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 176 CFPDSTSFNTVIQGF 190
CFPD ++NT+I GF
Sbjct: 320 CFPDVVTYNTLITGF 334
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 11 NFHVYGIRINGMC-------KIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y ING C D + KG DV Y++LI G C R+++ ++LF
Sbjct: 288 NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 347
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+M QG+ + TYN LIH + A + + +I Y++++D LC
Sbjct: 348 CEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G+ E+A ++ L + + ++TYNI+I GLC+ + EA L + KG PD+ ++
Sbjct: 408 GKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 467
Query: 184 NTVIQGFL---VKNETDRASSFLKKN 206
T+I G ++ E D+ +K++
Sbjct: 468 ITMISGLCRKGLQREADKLCRRMKED 493
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ ++ + N+ + L+ KM GI+ +L ++ LIH A+ALL +
Sbjct: 82 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 141
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ + +I +++G C+ R++EA +D + G VP VV YN +INGLCK +
Sbjct: 142 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 201
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGF 190
A ++ M++KG D+ ++NT+I G
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGL 229
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
DL + + Y I I G+C+ ++ A +KG+ D Y ++I+GLC
Sbjct: 419 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86
+EA +L +M G Y+ + D++
Sbjct: 479 LQREADKLCRRMKEDGFMPSERIYDETLRDHY 510
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
K+G D + Y +LI+GLC F R+ EA +LF +MV + +VTY LI+ +
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD 244
Query: 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
AM L+ ++ E N+ YS ++DGLC+ GR +A + + + +G P +VTY LI
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
GLCK+ I EA +LL +M +G PD+ + VI GF ++ A++FL
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFL 355
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 48/254 (18%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ E+ Y ING+C + +D A++ KGI +VF YSSL++GLC
Sbjct: 217 EMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDG 276
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R +A+ELF+ M+A+G +VTY LI ++Q A+ LL + + + +Y
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYG 336
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI------------------------ 150
VI G C + ++ EA LD++ G+ P +T+NI
Sbjct: 337 KVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLY 396
Query: 151 -----------------LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
L+ LCKKG +A +L+ ++ GC P ++ +I L K
Sbjct: 397 LSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDK 456
Query: 194 NETDRASSFLKKNM 207
AS L +++
Sbjct: 457 TIVGEASDTLLRDL 470
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 9/184 (4%)
Query: 13 HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
+ YG I+G+C+ ID A ++K V Y+SLINGLC + EA+ ++
Sbjct: 193 YTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
M ++GI + TY+ L+ D K GR AM L + + N+ Y+ +I GLC+
Sbjct: 253 MKSKGIEPNVFTYSSLM-DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311
Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
+ +EA + LD+++ +GL P Y +I+G C EA L +M G P+ ++N
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN 371
Query: 185 TVIQ 188
++
Sbjct: 372 IHVK 375
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 136 LSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
+ E GL P V + N+LI LC+ ++A K+ ++M ++GC PDS ++ T+I G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 195 ETDRA 199
D A
Sbjct: 207 RIDEA 211
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 15 YGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
Y ING K + D A + +GI DV Y+S+I LC + +A+E+ + MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
G+ + +TYN ++H A+ L+ + D E ++ YSL++D LC+ GR
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
EARK D ++++GL P + TY L+ G KG ++E LL M G PD F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378
Query: 188 QGFLVKNETDRA 199
+ + + D+A
Sbjct: 379 CAYAKQGKVDQA 390
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 9/205 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR 55
+ +Q N YG I +CK ++ A I +G+ VY+SLI+GLCT N+
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
+ A EL +M+ +GI + +N +I D+ K+GR + L + + R + N+ Y+
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSII-DSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+G C G+ +EA K L + GL P VTY+ LING CK + +A L +M+
Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
G PD ++N ++QG T A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAA 600
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
K N Y ING CKI ++ A+ G+ D+ Y+ ++ GL R A
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
EL+ ++ G EL TYN ++H + + A+ + Q L +L ++++ID L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
+VGR +EA+ S GLVP TY ++ + +G++ E D+L + M++ GC DS
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721
Query: 181 TSFNTVIQGFLVKNETDRASSFLK 204
N +++ L + E RA ++L
Sbjct: 722 GMLNFIVRELLQRGEITRAGTYLS 745
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 10/201 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK----------KGICLDVFVYSSLINGLCT 52
+TE N Y I + G+C A++ G DV Y+++ING
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
+A + +M+ +GI ++VTYN +I + Q AM +L T+ ++ +
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
Y+ ++ G C G+ +EA L ++ G+ P VVTY++L++ LCK G MEA K+ M
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 173 EKGCFPDSTSFNTVIQGFLVK 193
++G P+ T++ T++QG+ K
Sbjct: 329 KRGLKPEITTYGTLLQGYATK 349
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 11/203 (5%)
Query: 14 VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-FDK 65
YGI I C+ +D + IKKG +D ++ L+ GLC R +A+++ +
Sbjct: 89 TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCR 122
M G + +YN L+ ++ A+ LL + D+ ++ Y+ VI+G +
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
G ++A ++ ++G++P VVTYN +I LCK + +A ++L M + G PD +
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
+N+++ G+ + A FLKK
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKK 291
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y ++G C + AI G+ DV YS L++ LC R EA ++FD M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ E+ TY L+ K LL + R+ + V+S++I + G+
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
++A ++ ++GL P VTY +I LCK G + +A QM ++G P + +N++
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447
Query: 187 IQGFLVKNETDRASSFL 203
I G N+ +RA +
Sbjct: 448 IHGLCTCNKWERAEELI 464
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 1 FD-LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCT 52
FD +T++ K YG + G + D ++ GI D +V+S LI
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAK 383
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
++ +A+ +F KM QG+ VTY +I K GR AM + + +
Sbjct: 384 QGKVDQAMLVFSKMRQQGLNPNAVTYGAVI-GILCKSGRVEDAMLYFEQMIDEGLSPGNI 442
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
VY+ +I GLC +WE A + + ++ ++G+ + +N +I+ CK+G ++E++KL M
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502
Query: 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
G P+ ++NT+I G+ + + D A L
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
++ G+ +V Y++LING C ++ EA++L MV+ G+ VTY+ LI+ +
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
A+ L + +E +I Y++++ GL + R A++ +++E G + TYNI+
Sbjct: 563 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 622
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRA 199
++GLCK + +A +QM + C D + +FN +I L D A
Sbjct: 623 LHGLCKNKLTDDA----LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVY 113
++A +FD+++ +G A + N + D + +A++ + R D+ ++ Y
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALAD-VARDSPAAAVSRYNRMARAGADEVTPDLCTY 90
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172
++I CR GR + L + +KG + + L+ GLC +A D +L +M
Sbjct: 91 GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150
Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
E GC P+ S+N +++G +N + A L
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELL 181
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK--KGIC-----LDVFVYSSLINGLCTFNR 55
+TE + Y I ++G+CK + D A++ + +C L+ ++ +I+ L R
Sbjct: 607 ITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYS 114
EA +LF + G+ TY L+ +N QG + L ++E + ++ + +
Sbjct: 667 NDEAKDLFVAFSSNGLVPNYWTYR-LMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 725
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
++ L + G A L + EK T ++ I+
Sbjct: 726 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 123 VGRWEE-ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
V R+ AR D+++ P + TY ILI C+ G + L + +KG D+
Sbjct: 69 VSRYNRMARAGADEVT-----PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAI 123
Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
+F +++G T A + + M
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRM 149
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 111/201 (55%), Gaps = 8/201 (3%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I G CK + ++ + ++G+ + Y++LI+G A +F +M
Sbjct: 358 AYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V+ G+ +++TYN L+ +A+ + + +++ +L+I Y+ +I+ LC+ G+
Sbjct: 418 VSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKV 477
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
E+ LS KG+ P VVTY +++G C+KG+ EAD L V+MKE G P+S ++NT+
Sbjct: 478 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537
Query: 187 IQGFLVKNETDRASSFLKKNM 207
I+ L ++ + AS+ L K M
Sbjct: 538 IRARL-RDGDEAASAELIKEM 557
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 43/215 (20%)
Query: 19 INGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+NG C +I E +D ++ G D +++L++GL N+ EAV L ++MV +G
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 211
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR--------- 122
+LVTY +I+ ++ A+ LL +E+ K E ++ +Y+ +IDGLC+
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271
Query: 123 --------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
GRW +A + L + EK + P +V +N LI+
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Query: 157 KKGMIMEADKLLVQM-KEKGCFPDSTSFNTVIQGF 190
K+G ++EA+KL +M K K CFPD ++NT+I+GF
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGF 366
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
YG ING+CK E D A+ K I DV +Y+++I+GLC + + +A +LF+KM
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276
Query: 67 VAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
+GI ++ TYNPLI + W R + L + + D + ++ +ID
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD-----LVFFNALIDAFV 331
Query: 122 RVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
+ G+ EA K D++ K P VV YN LI G CK + E ++ +M ++G ++
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
++ T+I GF + D A K+
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQ 416
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I IN C+ ++ A+ K G + +SL+NG C NR+ EAV L
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
D+MV G + VT+ L+H ++ A+AL++ + + ++ Y VI+GLC+
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A L+++ + + VV YN +I+GLCK + +A L +M+ KG PD ++
Sbjct: 229 GEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288
Query: 184 NTVIQ 188
N +I
Sbjct: 289 NPLIS 293
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
+S L++ + N+ + L ++M GI+ L TY+ I+ + A+A+L +
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ Y +I + +++G C R EA +DQ+ E G P VT+ L++GL +
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA L+ +M KGC PD ++ VI G + E D A + L K
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 7/192 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++++ GN Y I+G + R+ D+A + G+ D+ Y+ L++GLC
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNG 440
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
++ A+ +F+ M + + ++VTY +I + L +L + N+ Y+
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 500
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ G CR G EEA ++ E G +P TYN LI + G + +L+ +M+
Sbjct: 501 TMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSC 560
Query: 175 GCFPDSTSFNTV 186
G D+++F V
Sbjct: 561 GFAGDASTFGLV 572
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 54/112 (48%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ L + + + +I +S ++ + ++ +++ +Q+ G+ + TY+I IN
Sbjct: 59 AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
C++ + A +L +M + G P + N+++ GF N A + + +
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 170
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 9/198 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+GI I+ CK ++D A+ G+ D+ VY+SLI G C L LFD++
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
+ +G + +TYN LI + K G+ A + + + N+ Y+ +IDGLC VG+
Sbjct: 274 LERGDSPCAITYNTLIR-GFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK 332
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+EA + L+ + EK P VTYNI+IN LCK G++ +A +++ MK++ PD+ ++N
Sbjct: 333 TKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392
Query: 186 VIQGFLVKNETDRASSFL 203
++ G K + D AS L
Sbjct: 393 LLGGLCAKGDLDEASKLL 410
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 9/210 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL---------DVFVYSSLINGLCTF 53
+ ++R + + Y I + G+C ++D A K + DV Y++LI+GLC
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437
Query: 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
NRL +A++++D +V + + VT N L++ + AM L + + K N + Y
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +IDG C+ G A+ L ++ L P V YN L++ LCK+G + +A +L +M+
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
FPD SFN +I G L + A S L
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 3 LTEQRFKG---NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCT 52
L E +F G + VY I G C E+D +++G Y++LI G C
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
+LKEA E+F+ M+ +G+ + TY LI A+ LL + E N
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
Y+++I+ LC+ G +A + ++ + ++ P +TYNIL+ GLC KG + EA KLL M
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414
Query: 173 EKGCF--PDSTSFNTVIQGFLVKNETDRA 199
+ + PD S+N +I G +N +A
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQA 443
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 84/173 (48%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+K+G +V+ ++ L+ GLC +AV L +M + ++ +YN +I E +
Sbjct: 134 LKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKEL 193
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
A+ L ++ ++ + ++ID C+ G+ +EA L ++ GL +V Y L
Sbjct: 194 EKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
I G C G + L ++ E+G P + ++NT+I+GF + AS +
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
Y+++I+G C L A L KM + + YN L+ ++ A L + +
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555
Query: 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
+RD ++ ++++IDG + G + A L +S GL P + TY+ LIN K G +
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
EA +M + G PD+ ++V++ + + ETD+ + +KK
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKK 659
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 44/221 (19%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I G CK+ ++ A I++G+ +V+ Y+ LI+GLC + KEA++L + M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343
Query: 67 VAQ-------------------GITAELV----------------TYNPLIHDNWEKQGR 91
+ + G+ A+ V TYN L+ K
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDL 403
Query: 92 FSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
A LL + +D + +V Y+ +I GLC+ R +A D L EK VT N
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463
Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
IL+N K G + +A +L Q+ + +S ++ +I GF
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 31 AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
A+ G L F ++L+ L + A + KM+ V+ + L+ + +
Sbjct: 64 AVDSGSSL-AFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRK 122
Query: 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
A +L + + + N+ +++++ GLCR +A L ++ L+P V +YN
Sbjct: 123 TGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNT 182
Query: 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+I G C+ + +A +L +MK GC ++ +I F + D A FLK+
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKE 237
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 7/199 (3%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
F + + + +NG+CK + AI ++G DV+ Y+S+I+GLC +KEAV
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
E+ D+M+ + + VTYN LI ++ A L + L ++ ++ +I GL
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
C A + +++ KG P TYN+LI+ LC KG + EA +L QM+ GC
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 181 TSFNTVIQGFLVKNETDRA 199
++NT+I GF N+T A
Sbjct: 471 ITYNTLIDGFCKANKTREA 489
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNR 55
+ ++ + + + Y I+G+CK+ E+ D I + + Y++LI+ LC N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
++EA EL + ++GI ++ T+N LI + AM L + + E + Y++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+ID LC G+ +EA L Q+ G V+TYN LI+G CK EA+++ +M+ G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+S ++NT+I G + A+ + +
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 7/201 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I+ +CK +++ A + KGI DV ++SLI GLC + A+ELF
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
++M ++G + TYN LI K A+ +L+ +E ++ Y+ +IDG C+
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
+ EA + D++ G+ VTYN LI+GLCK + +A +L+ QM +G PD ++
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 184 NTVIQGFLVKNETDRASSFLK 204
N+++ F + +A+ ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQ 564
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 5 EQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
E R KG + Y + I+ +C ++D A+ G V Y++LI+G C N
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA------LLQTLERDKYEL 108
+ +EA E+FD+M G++ VTYN LI D K R A +++ + DKY
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLI-DGLCKSRRVEDAAQLMDQMIMEGQKPDKY-- 541
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
Y+ ++ CR G ++A + ++ G P +VTY LI+GLCK G + A KLL
Sbjct: 542 ---TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
++ KG ++N VIQG K +T A + ++
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFRE 635
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 19 INGMCKIREIDSAI--------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70
++G CK ++ A+ + G D + +++L+NGLC +K A+E+ D M+ +G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325
Query: 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
++ TYN +I + A+ +L + N Y+ +I LC+ + EEA
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEAT 385
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
+ L+ KG++P V T+N LI GLC A +L +M+ KGC PD ++N +I
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445
Query: 191 LVKNETDRASSFLKK 205
K + D A + LK+
Sbjct: 446 CSKGKLDEALNMLKQ 460
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 19 INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
I G+C R A++ KG D F Y+ LI+ LC+ +L EA+ + +M G
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
++TYN LI + A + +E N Y+ +IDGLC+ R E+A +
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
+DQ+ +G P TYN L+ C+ G I +A ++ M GC PD ++ T+I G
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586
Query: 192 VKNETDRASSFLK 204
+ AS L+
Sbjct: 587 KAGRVEVASKLLR 599
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 10/205 (4%)
Query: 9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVE 61
K + + + I +C+ ++ AI G+ D +++++ G L A+
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLE-RDKYELNIEVYSLVIDG 119
+ ++MV G + V+ N ++H + K+GR A+ +Q + +D + + ++ +++G
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVH-GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
LC+ G + A + +D + ++G P V TYN +I+GLCK G + EA ++L QM + C P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364
Query: 180 STSFNTVIQGFLVKNETDRASSFLK 204
+ ++NT+I +N+ + A+ +
Sbjct: 365 TVTYNTLISTLCKENQVEEATELAR 389
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 14 VYGIRINGMCK---IREIDSAIKK----GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+G CK RE + + G+ + Y++LI+GLC R+++A +L D+M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+ +G + TYN L+ A ++Q + + E +I Y +I GLC+ GR
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNT 185
E A K L + KG+ YN +I GL +K EA L +M E+ PD+ S+
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651
Query: 186 VIQGF 190
V +G
Sbjct: 652 VFRGL 656
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+ + G D+ Y +LI+GLC R++ A +L + +GI YNP+I +
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622
Query: 88 KQGRFSAMALL-QTLERDKYELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGV 145
K+ A+ L + LE+++ + Y +V GLC G EA L +L EKG VP
Sbjct: 623 KRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682
Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
+ +L GL M KL+ + +K F +
Sbjct: 683 SSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSE 716
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
++S G+ P V T+N+LI LC+ + A +L M G PD +F TV+QG++ +
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 195 ETDRA 199
+ D A
Sbjct: 239 DLDGA 243
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%)
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
++ ++++I LCR + A L+ + GLVP T+ ++ G ++G + A ++
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIR 247
Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
QM E GC + S N ++ GF + + A +F+++
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E+ K + Y I I+G+CK +D+A KG D+ Y++LI G C R
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
+ +L M+ + I+ +VT++ LI D++ K+G+ A LL+ + + N Y+
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLI-DSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+IDG C+ R EEA + +D + KG P ++T+NILING CK I + +L +M +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432
Query: 175 GCFPDSTSFNTVIQGF 190
G ++ ++NT++QGF
Sbjct: 433 GVIANTVTYNTLVQGF 448
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 42/228 (18%)
Query: 14 VYGIRINGMC---KIRE----IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
++ +NG+C ++ E +D ++ G + ++L+NGLC ++ +AV L D+M
Sbjct: 160 IFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRM 219
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR---- 122
V G VTY P+++ + AM LL+ +E +L+ YS++IDGLC+
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSL 279
Query: 123 -------------------------------VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
GRW++ K L + ++ + P VVT+++L
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
I+ K+G + EAD+LL +M ++G P++ ++N++I GF +N + A
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + I ING CK ID ++ +G+ + Y++L+ G C +L+ A +LF
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461
Query: 64 DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
+MV++ + ++V+Y L+ DN E + A+ + +E+ K EL+I +Y ++I G+
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELE---KALEIFGKIEKSKMELDIGIYMIIIHGM 518
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
C + ++A L KG+ YNI+I+ LC+K + +AD L +M E+G PD
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDE 578
Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
++N +I+ L ++ A+ +++
Sbjct: 579 LTYNILIRAHLGDDDATTAAELIEE 603
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 99/200 (49%), Gaps = 9/200 (4%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
FK + Y I G C D IK+ I +V +S LI+ +L+EA
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDG 119
+L +M+ +GI +TYN LI D + K+ R A+ ++ + + +I ++++I+G
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLI-DGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
C+ R ++ + ++S +G++ VTYN L+ G C+ G + A KL +M + PD
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 180 STSFNTVIQGFLVKNETDRA 199
S+ ++ G E ++A
Sbjct: 473 IVSYKILLDGLCDNGELEKA 492
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 31 AIKKGICLDVF---VYSSLINGLCTFNRLKEAVE----------LFDKMVAQGITAELVT 77
IK +D+F + S + + FNRL A+ L +M ++GI + T
Sbjct: 66 GIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125
Query: 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137
+ +I+ + A + + + + YE + +++ +++GLC R EA + +D++
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197
E G P ++T N L+NGLC G + +A L+ +M E G P+ ++ V+ +T
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245
Query: 198 RASSFLKK 205
A L+K
Sbjct: 246 LAMELLRK 253
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Query: 19 INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
ING CK + A I+ G +V Y++LI+GLC L A EL +M G+
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+ TYN +++ + A+ L+ E + Y+ ++D C+ G ++A++
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
L ++ KGL P +VT+N+L+NG C GM+ + +KLL M KG P++T+FN++++ +
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Query: 192 VKNETDRASSFLK 204
++N A++ K
Sbjct: 608 IRNNLKAATAIYK 620
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
VY I+G CK +I +A K + I DV Y+++I+G C + EA +LF +M
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+G+ + VT+ LI+ + A + + + N+ Y+ +IDGLC+ G
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
+ A + L ++ + GL P + TYN ++NGLCK G I EA KL+ + + G D+ ++ T+
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 187 IQGFLVKNETDRASSFLKK 205
+ + E D+A LK+
Sbjct: 533 MDAYCKSGEMDKAQEILKE 551
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 9/199 (4%)
Query: 15 YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
Y +NG C+ E+D K KG+ + ++Y S+I LC +L EA E F +M+
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
QGI + V Y LI D + K+G A + + ++ Y+ +I G C++G
Sbjct: 344 RQGILPDTVVYTTLI-DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
EA K ++ KGL P VT+ LING CK G + +A ++ M + GC P+ ++ T+
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462
Query: 187 IQGFLVKNETDRASSFLKK 205
I G + + D A+ L +
Sbjct: 463 IDGLCKEGDLDSANELLHE 481
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
G+C +V Y+ +I+ +C R+KEA L M +G T ++++Y+ ++ + + + G
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV-NGYCRFGELDK 299
Query: 95 M-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
+ L++ ++R + N +Y +I LCR+ + EA + ++ +G++P V Y LI+
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
G CK+G I A K +M + PD ++ +I GF
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 44/224 (19%)
Query: 11 NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I+G+CK ++DSA K G+ ++F Y+S++NGLC ++EAV+L
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
+ A G+ A+ VTY L+ D + K G A +L+ + + I ++++++G C
Sbjct: 515 GEFEAAGLNADTVTYTTLM-DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILI------------------------------ 152
G E+ K L+ + KG+ P T+N L+
Sbjct: 574 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633
Query: 153 -----NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
G CK + EA L +MK KG ++++ +I+GFL
Sbjct: 634 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 677
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
A+ +F + G+ + +YN +IH + A LL +E Y ++ YS V++
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G CR G ++ K ++ + KGL P Y +I LC+ + EA++ +M +G P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 179 DSTSFNTVIQGFLVKNETDRASSFL 203
D+ + T+I GF + + AS F
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFF 374
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 14 VYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y ++ CK E+D A + KG+ + ++ L+NG C L++ +L + M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
+A+GI T+N L+ + +A A+ + + + + Y ++ G C+
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
+EA ++ KG V TY++LI G K+ +EA ++ QM+ +G D F+
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%)
Query: 15 YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74
Y IR N +G+ D Y +L+ G C +KEA LF +M +G +
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
+ TY+ LI +++ A + + R+ + E++ D + R + +D
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPID 725
Query: 135 QLSEKGLV 142
++ E LV
Sbjct: 726 EIIENYLV 733
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 9/178 (5%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y I+G CK + ++ +K KG+ + Y+ LI G C R A E+F++M
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
++ ++ TYN L+ D G+ A+ + + + + + ++NI Y+++I G+C++G+
Sbjct: 390 SSRRAPPDIRTYNVLL-DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
E+A L KG+ P V+TY +I+G C++G+I EAD L +MKE G P+ + +
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 7/190 (3%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAV 60
F+ + + +NG C I+ AI G +V Y++LI LC L AV
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
ELF++M G +VTYN L+ E A LL+ + + + E N+ ++ +ID
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
+VG+ EA++ + + + + P V TY LINGLC G++ EA ++ M+ GC+P+
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328
Query: 181 TSFNTVIQGF 190
+ T+I GF
Sbjct: 329 VIYTTLIHGF 338
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 91/168 (54%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+K G D+ ++SL+NG C +NR+++A+ LFD+++ G +VTY LI + +
Sbjct: 145 MKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHL 204
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
A+ L + + N+ Y+ ++ GLC +GRW +A L + ++ + P V+T+ L
Sbjct: 205 NHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTAL 264
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
I+ K G +MEA +L M + +PD ++ ++I G + D A
Sbjct: 265 IDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEA 312
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 7/198 (3%)
Query: 15 YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
YG ING+C +D A + G + +Y++LI+G C R+++ +++F +M
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
+G+ A +TY LI A + + + +I Y++++DGLC G+ E
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVE 415
Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
+A + + ++ + +VTY I+I G+CK G + +A L + KG P+ ++ T+I
Sbjct: 416 KALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMI 475
Query: 188 QGFLVKNETDRASSFLKK 205
GF + A S KK
Sbjct: 476 SGFCRRGLIHEADSLFKK 493
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
D+ ++R + N + I+ K+ ++ A I+ + DVF Y SLINGLC +
Sbjct: 248 DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG 307
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
L EA ++F M G V Y LIH + + M + + + N Y+
Sbjct: 308 LLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++I G C VGR + A++ +Q+S + P + TYN+L++GLC G + +A + M+++
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427
Query: 175 GCFPDSTSFNTVIQGFL----VKNETDRASSFLKKNM 207
+ ++ +IQG V++ D S K M
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 35 GICLDVFVYSS----LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90
G C + +SS L NGL + +A++LF +MV ++ + L+ K
Sbjct: 40 GFCFWIRAFSSYRKILRNGLHNL-QFNDALDLFTRMVHSRPLPSIIDFTRLL-SVIAKMN 97
Query: 91 RFSA-MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149
R+ ++L + ++ + ++V+ +C + A L ++ + G P +VT+
Sbjct: 98 RYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFT 157
Query: 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
L+NG C I +A L Q+ G P+ ++ T+I+
Sbjct: 158 SLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 52/112 (46%)
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ L + + +I ++ ++ + ++ R++ +Q+ G+ P + T NI+++
Sbjct: 67 ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+C A L +M + G PD +F +++ G+ N + A + +
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQ 178
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Query: 30 SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89
S + +GI D Y+ L+NGL +++ +A E+F +M +GI ++ +Y LI+ + K
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN-GFSKL 640
Query: 90 GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
G A ++ + + N+ +Y++++ G CR G E+A++ LD++S KGL P VTY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
+I+G CK G + EA +L +MK KG PDS + T++ G N+ +RA + N
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 7/198 (3%)
Query: 13 HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
H Y + I+G+ K R D+A + GI + ++Y I + +++A LFD
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
M+A G+ + Y LI ++ LL +++ ++ Y V+ G+C G
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ A + ++ G P VV Y LI + +A ++L +MKE+G PD +N+
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 186 VIQGFLVKNETDRASSFL 203
+I G D A SFL
Sbjct: 493 LIIGLSKAKRMDEARSFL 510
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 3 LTEQRFKG---NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
L E KG N Y I+G CK ++ A + KG+ D FVY++L++G C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW-----EKQGRFSAMALLQTLERDKY- 106
N ++ A+ +F +G + +N LI NW + + + + L D++
Sbjct: 745 LNDVERAITIFGTN-KKGCASSTAPFNALI--NWVFKFGKTELKTEVLNRLMDGSFDRFG 801
Query: 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166
+ N Y+++ID LC+ G E A++ Q+ L+P V+TY L+NG K G E
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+ + G PD ++ +I FL + T +A
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Query: 13 HVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
+ YG + GMC ++D A I G +V +Y++LI +R +A+ + +
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
M QGI ++ YN LI + + A + L + + + N Y I G
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ A K + ++ E G++P V LIN CKKG ++EA M ++G D+ ++
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 186 VIQGFLVKNETDRASSFLKK 205
++ G ++ D A ++
Sbjct: 598 LMNGLFKNDKVDDAEEIFRE 617
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 13 HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
Y I G C+ + + K+ I + + Y +++ G+C+ L A + +
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVG 124
M+A G +V Y LI + + RF AM +L+ ++ +I Y+ +I GL +
Sbjct: 443 MIASGCRPNVVIYTTLIK-TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK 501
Query: 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184
R +EAR L ++ E GL P TY I+G + ADK + +M+E G P+
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561
Query: 185 TVIQGFLVKNETDRASS 201
+I + K + A S
Sbjct: 562 GLINEYCKKGKVIEACS 578
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 2/194 (1%)
Query: 12 FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
F + ++G K++E S I KG+ + Y LI+GLC RL++A L +M + G+
Sbjct: 251 FRTATLNVDGALKLKE--SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGV 308
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+ + TY+ LI + + +A L+ + + +Y I + + G E+A+
Sbjct: 309 SLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKA 368
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
D + GL+P Y LI G C++ + + +LLV+MK++ ++ TV++G
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428
Query: 192 VKNETDRASSFLKK 205
+ D A + +K+
Sbjct: 429 SSGDLDGAYNIVKE 442
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 50/235 (21%)
Query: 5 EQRFKG---NFHVYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFN 54
E R KG + YG+ ING K+ + D +++G+ +V +Y+ L+ G C
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
+++A EL D+M +G+ VTY +I D + K G + A L ++ + VY
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTII-DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Query: 114 SLVIDGLCRV----------------------------------GRWEEARKKLDQLSEK 139
+ ++DG CR+ G+ E + L++L +
Sbjct: 736 TTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDG 795
Query: 140 GL----VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
P VTYNI+I+ LCK+G + A +L QM+ P ++ +++ G+
Sbjct: 796 SFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 7/209 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ EQ + Y I G+ K + +D A ++ G+ + F Y + I+G +
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
A + +M G+ V LI++ +K A + +++ + + Y+
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++++GL + + ++A + ++ KG+ P V +Y +LING K G + +A + +M E+
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFL 203
G P+ +N ++ GF E ++A L
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELL 685
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 7/200 (3%)
Query: 13 HVYGIRINGMCKIREIDSAIKK-------GICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
+ Y + I+G+CKI+ ++ A G+ LD YS LI+GL A L +
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
MV+ GI + Y+ I ++ A AL + + Y+ +I+G CR
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ + L ++ ++ +V TY ++ G+C G + A ++ +M GC P+ + T
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457
Query: 186 VIQGFLVKNETDRASSFLKK 205
+I+ FL + A LK+
Sbjct: 458 LIKTFLQNSRFGDAMRVLKE 477
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 36/196 (18%)
Query: 29 DSAIKKGICLD-VFVYSS---------------LINGLCTFNRLKEAVELFDKMVAQGIT 72
D I KG + VFV+SS L++ L +NRL +++ MV + +
Sbjct: 159 DGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVV 218
Query: 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEA 129
++ TY+ LI + + G L +D K E +L +DG A
Sbjct: 219 FDVKTYHMLIIAHC-RAGNVQ-------LGKDVLFKTEKEFRTATLNVDG---------A 261
Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
K + + KGLVP TY++LI+GLCK + +A LLV+M G D+ +++ +I G
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321
Query: 190 FLVKNETDRASSFLKK 205
L D A + +
Sbjct: 322 LLKGRNADAAKGLVHE 337
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 2 DLTEQRF-KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTF 53
D + RF K N Y I I+ +CK +++A + + V Y+SL+NG
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853
Query: 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-----ERDKYEL 108
R E +FD+ +A GI + + Y+ +I+ ++ A+ L+ + D +L
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
+I ++ G +VG E A K ++ + +P T LIN C
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM------A 96
Y+ +I+ LC L+ A ELF +M + ++TY L++ ++K GR + M A
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN-GYDKMGRRAEMFPVFDEA 866
Query: 97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNIL 151
+ +E D +YS++I+ + G +A +DQ+ K V + T L
Sbjct: 867 IAAGIEPDHI-----MYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
++G K G + A+K++ M PDS +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 42/235 (17%)
Query: 11 NFHVYGIRINGMCKIREIDSAIKKGICL-------DVFVYSSLINGLCTFNRLKEAVELF 63
N Y + I G+C+ E+D A++ CL DV Y++LI GLC ++ +EA
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 64 DKMVAQGITAELVTYNPLIH----------------------------------DNWEKQ 89
KMV +G+ + TYN LI D +
Sbjct: 310 GKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHE 369
Query: 90 GRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
G + A+AL + N+ +Y+ +I GL G EA + +++SEKGL+P V T+
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429
Query: 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
NIL+NGLCK G + +AD L+ M KG FPD +FN +I G+ + + + A L
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEIL 484
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 96/173 (55%)
Query: 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92
+KG+ +V ++ L+NGLC + +A L M+++G ++ T+N LIH +
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
+A+ +L + + + ++ Y+ +++GLC+ ++E+ + + EKG P + T+NIL+
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538
Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
LC+ + EA LL +MK K PD+ +F T+I GF + D A + +K
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + + IR+ CK +A++ +G ++V Y +++ G N E ELF
Sbjct: 145 DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELF 204
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
KM+A G++ L T+N L+ +K LL + + N+ Y+L I GLC+
Sbjct: 205 GKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G + A + + L E+G P V+TYN LI GLCK EA+ L +M +G PDS ++
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324
Query: 184 NTVIQGF 190
NT+I G+
Sbjct: 325 NTLIAGY 331
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+++E+ + I +NG+CK+ + A I KG D+F ++ LI+G T
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+++ A+E+ D M+ G+ ++ TYN L++ + M +T+ N+ ++
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++++ LCR + +EA L+++ K + P VT+ LI+G CK G + A L +M+E
Sbjct: 536 ILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595
Query: 175 GCFPDST-SFNTVIQGFLVK 193
ST ++N +I F K
Sbjct: 596 YKVSSSTPTYNIIIHAFTEK 615
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 92/176 (52%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+ G+ L + ++ L+ LC +KE +L DK++ +G+ L TYN I ++
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL 267
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
A+ ++ L + ++ Y+ +I GLC+ +++EA L ++ +GL P TYN L
Sbjct: 268 DGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTL 327
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
I G CK GM+ A++++ G PD ++ ++I G + ET+RA + + +
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 89/172 (51%)
Query: 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
+GI DV+ ++ + C +R A+ L + M +QG +V Y ++ +E+ +
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAE 199
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
L + L + ++ ++ LC+ G +E K LD++ ++G++P + TYN+ I
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259
Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
GLC++G + A +++ + E+G PD ++N +I G ++ A +L K
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK 311
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 13 HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
H Y ++ + +D + G+ DV+ Y+SL+NGLC ++ ++ +E + MV +G
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
L T+N L+ + A+ LL+ ++ + + +IDG C+ G + A
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 133 LDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
++ E V TYNI+I+ +K + A+KL +M ++ PD ++ ++ GF
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648
Query: 192 VKNETDRASSFLKKNM 207
+ FL + M
Sbjct: 649 KTGNVNLGYKFLLEMM 664
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+D IK+G+ ++F Y+ I GLC L AV + ++ QG +++TYN LI+ +
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK 298
Query: 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
A L + + E + Y+ +I G C+ G + A + + G VP T
Sbjct: 299 NSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFT 358
Query: 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
Y LI+GLC +G A L + KG P+ +NT+I+G
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL 401
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ E+ N + I + +C+ R++D A+ K + D + +LI+G C
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581
Query: 56 LKEAVELFDKMV-AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
L A LF KM A +++ TYN +IH EK A L Q + + Y
Sbjct: 582 LDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYR 641
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
L++DG C+ G K L ++ E G +P + T +IN LC + + EA ++ +M +K
Sbjct: 642 LMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701
Query: 175 GCFPDSTS 182
G P++ +
Sbjct: 702 GLVPEAVN 709
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 10/204 (4%)
Query: 11 NFHVYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + Y +NG+CK + + + ++KG ++F ++ L+ LC + +L EA+ L
Sbjct: 495 DVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLL 554
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERD-KYELNIEVYSLVIDGLC 121
++M + + + VT+ LI D + K G A L + +E K + Y+++I
Sbjct: 555 EEMKNKSVNPDAVTFGTLI-DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFT 613
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
A K ++ ++ L P TY ++++G CK G + K L++M E G P T
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLT 673
Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
+ VI V++ A+ + +
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHR 697
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 80/160 (50%)
Query: 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
VF Y+++++ L +A +++ +M +GIT ++ ++ + + +A+ LL
Sbjct: 111 VFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLN 170
Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+ E+N+ Y V+ G E + ++ G+ + T+N L+ LCKKG
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKG 230
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+ E +KLL ++ ++G P+ ++N IQG + E D A
Sbjct: 231 DVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 58 EAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAM--ALLQTLERDKYELNIEVYS 114
+A+E+F+ M + G L TY +I + G+F AM L+ E + VY
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVI-EKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYV 80
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+ R G+ +EA +++ P V +YN +++ L G +A K+ ++M+++
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207
G PD SF ++ F K A+ L NM
Sbjct: 141 GITPDVYSFTIRMKSF-CKTSRPHAALRLLNNM 172
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 9/212 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
+LTE F N +Y I+G CK EI+ A K G+ + Y+ LINGL
Sbjct: 188 ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNG 247
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVY 113
K+ E+++KM G+ L TYN + + K GR A + + NI Y
Sbjct: 248 VKKQGFEMYEKMQEDGVFPNLYTYN-CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I GLCR + EA K +DQ+ G+ P ++TYN LI+G C G + +A L +K
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+G P ++N ++ GF K +T A+ +K+
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ E+ N Y I G+C+ +++ A K GI ++ Y++LI+G C
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+L +A+ L + ++G++ LVTYN L+ K A +++ +E + + Y+
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++ID R E+A + + E GLVP V TY++LI+G C KG + EA +L M EK
Sbjct: 413 ILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
C P+ +NT+I G+ + + RA LK+
Sbjct: 473 NCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 7/206 (3%)
Query: 1 FDLTEQRFKGNFHVYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTF 53
F++ + N Y + ING+ K + + G+ +++ Y+ ++N LC
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281
Query: 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113
R K+A ++FD+M +G++ +VTYN LI + A ++ ++ D N+ Y
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +IDG C VG+ +A L +GL P +VTYNIL++G C+KG A K++ +M+E
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
+G P ++ +I F + ++A
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKA 427
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 106/185 (57%), Gaps = 7/185 (3%)
Query: 13 HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDK 65
+ +GI I G C+ EI+ + + G +V +Y++LI+G C +++A +LF +
Sbjct: 164 YSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223
Query: 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
M G+ A TY LI+ ++ + + + ++ D N+ Y+ V++ LC+ GR
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
++A + D++ E+G+ +VTYN LI GLC++ + EA+K++ QMK G P+ ++NT
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 186 VIQGF 190
+I GF
Sbjct: 344 LIDGF 348
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I+G C + ++ A+ +G+ + Y+ L++G C A ++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396
Query: 64 DKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
+M +GI VTY LI DN EK A+ L ++E ++ YS++I
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEK-----AIQLRLSMEELGLVPDVHTYSVLIH 451
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
G C G+ EA + + EK P V YN +I G CK+G A KLL +M+EK P
Sbjct: 452 GFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511
Query: 179 DSTSFNTVIQGFLVKNETDRASSFLKK 205
+ S+ +I+ + ++ A ++K
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEK 538
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
DL + + Y I ++G C+ + A K +GI Y+ LI+ +
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+++A++L M G+ ++ TY+ LIH K A L +++ E N +Y+
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G C+ G A K L ++ EK L P V +Y +I LCK+ EA++L+ +M +
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDS 542
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRAS 200
G P STS ++I KN++ +S
Sbjct: 543 GIDP-STSILSLIS--RAKNDSHVSS 565
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
+Y +IN L ++ F++MV G +N L+ G S
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLL---TFVVGSSSFNQWWSFF 152
Query: 102 ERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+K ++ ++VYS ++I G C G E++ L +L+E G P VV Y LI+G CKKG
Sbjct: 153 NENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194
I +A L +M + G + ++ +I G L KN
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLING-LFKN 246
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+V V ++ ILI G C+ G I ++ LL+++ E G P+ + T+I G K E ++A
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E K + +Y I+ +CK ++ A+ GI DV +Y+SL+NGLC R
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYS 114
++A L M + I +++T+N LI D + K+G+F A L + R NI Y+
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALI-DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I+G C G +EAR+ + KG P VV Y LING CK + +A K+ +M +K
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 175 GCFPDSTSFNTVIQGF 190
G ++ ++ T+IQGF
Sbjct: 347 GLTGNTITYTTLIQGF 362
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 37/204 (18%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+K G D+ ++SLING C NR++EA+ + ++MV GI ++V Y +I D+ K G
Sbjct: 134 MKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTII-DSLCKNGH 192
Query: 92 FS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150
+ A++L +E ++ +Y+ +++GLC GRW +A L ++++ + P V+T+N
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 151 LI-----------------------------------NGLCKKGMIMEADKLLVQMKEKG 175
LI NG C +G + EA ++ M+ KG
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
CFPD ++ ++I GF + D A
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDA 336
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y ING CK +++D A+K KG+ + Y++LI G + A E+F M
Sbjct: 319 AYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM 378
Query: 67 VAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
V++G+ + TYN L+H N + + +Q E D NI Y++++ GLC
Sbjct: 379 VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYN 438
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G+ E+A + + ++ + G++TY I+I G+CK G + A L + KG P+ ++
Sbjct: 439 GKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTY 498
Query: 184 NTVIQGFLVKNETDRASSFLKK 205
T+I G + A +K
Sbjct: 499 TTMISGLFREGLKHEAHVLFRK 520
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
Query: 19 INGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
+N + K+++ D I G+ D++ + L+N C ++ A KM+ G
Sbjct: 79 LNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGF 138
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
++VT+ LI+ AM+++ + + ++ +Y+ +ID LC+ G A
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
DQ+ G+ P VV Y L+NGLC G +AD LL M ++ PD +FN +I F+
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFV 258
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 3/174 (1%)
Query: 29 DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88
+ I+ I ++F Y+SLING C + EA ++F M +G ++V Y LI+ +
Sbjct: 271 NEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 330
Query: 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148
+ AM + + + N Y+ +I G +VG+ A++ + +G+ P + TY
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390
Query: 149 NILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRA 199
N+L++ LC G + +A + M+++ G P+ ++N ++ G + ++A
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++ L+N + + + L D + G++ +L T N L++ + + A + L +
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134
Query: 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162
+ +E +I ++ +I+G C R EEA ++Q+ E G+ P VV Y +I+ LCK G +
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194
Query: 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
A L QM+ G PD + +++ G A S L+
Sbjct: 195 YALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLR 236
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 40/150 (26%)
Query: 26 REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
RE+D G+ +++ Y+ L++GLC +L++A+ +F+ M
Sbjct: 416 REMD-----GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM------------------- 451
Query: 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
+ + ++ I Y+++I G+C+ G+ + A L KG+ P V
Sbjct: 452 ----------------RKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNV 495
Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKG 175
VTY +I+GL ++G+ EA L +MKE G
Sbjct: 496 VTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%)
Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
++ +++ + ++ +++ D L G+ + T N+L+N C+ A L +M
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134
Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+ G PD +F ++I GF + N + A S + +
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQ 167
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 21 GMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
GMCK ++ +A+ KG+ +V Y+++I+GL EA LF KM G++
Sbjct: 469 GMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Query: 19 INGMCKIREIDSAIKKGICL------DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72
I G +R I A++ L DVF Y++LING C NR+ +A + D+M ++ +
Sbjct: 131 IKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190
Query: 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132
+ VTYN +I + A+ +L L D + + Y+++I+ G +EA K
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250
Query: 133 LDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192
+D++ +GL P + TYN +I G+CK+GM+ A +++ ++ KGC PD S+N +++ L
Sbjct: 251 MDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLN 310
Query: 193 KNETDRASSFLKK 205
+ + + + K
Sbjct: 311 QGKWEEGEKLMTK 323
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 42/245 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ E+ + + Y ING CK+ ID A + K D Y+ +I LC+
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 55 RLK-----------------------------------EAVELFDKMVAQGITAELVTYN 79
+L EA++L D+M+++G+ ++ TYN
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
+I ++ A +++ LE E ++ Y++++ L G+WEE K + ++ +
Sbjct: 268 TIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
P VVTY+ILI LC+ G I EA LL MKEKG PD+ S++ +I F + D A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387
Query: 200 SSFLK 204
FL+
Sbjct: 388 IEFLE 392
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 25 IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-- 82
++ +D + +G+ D+F Y+++I G+C + A E+ + +G ++++YN L+
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307
Query: 83 ---HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
WE+ + L+ + +K + N+ YS++I LCR G+ EEA L + EK
Sbjct: 308 LLNQGKWEEGEK-----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362
Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
GL P +Y+ LI C++G + A + L M GC PD ++NTV+ + D+A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++ + K + Y I GMCK +D A + KG DV Y+ L+ L
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+ +E +L KM ++ +VTY+ LI AM LL+ ++ + Y
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 372
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I CR GR + A + L+ + G +P +V YN ++ LCK G +A ++ ++ E
Sbjct: 373 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 432
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
GC P+S+S+NT+ + RA
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRA 457
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 7/202 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y I I +C+ +I+ A+ +KG+ D + Y LI C RL A+E
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+ M++ G ++V YN ++ + A+ + L N Y+ + L
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G A + ++ G+ P +TYN +I+ LC++GM+ EA +LLV M+ P ++
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511
Query: 184 NTVIQGFLVKNETDRASSFLKK 205
N V+ GF + + A + L+
Sbjct: 512 NIVLLGFCKAHRIEDAINVLES 533
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E+ + + Y I C+ +D AI+ G D+ Y++++ LC +
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+A+E+F K+ G + +YN + W + A+ ++ + + + + Y+
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+I LCR G +EA + L + P VVTYNI++ G CK I +A +L M G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538
Query: 176 CFPDSTSFNTVIQG 189
C P+ T++ +I+G
Sbjct: 539 CRPNETTYTVLIEG 552
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 15 YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
Y + +CK + D A++ G + Y+++ + L + A+ + +M+
Sbjct: 406 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMM 465
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
+ GI + +TYN +I + A LL + ++ ++ Y++V+ G C+ R E
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 525
Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167
+A L+ + G P TY +LI G+ G EA +L
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 34/119 (28%)
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVV---------------------------------- 146
CR G + E+ L+ + KG P V+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
YN LING CK I +A ++L +M+ K PD+ ++N +I + + D A L +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
V Y+ ++ G C +R+++A+ + + MV G TY LI R AM L
Sbjct: 508 VVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELAN 567
Query: 100 TLER 103
L R
Sbjct: 568 DLVR 571
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
+LTE+ + + YG I+G+CK+ E+ +A KG+ + V+++LI+G C
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
+ EA ++D M +G A++ T N I + + R+ A L + +L+ Y
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNT-IASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSY 472
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +ID C+ G EEA++ ++S KG+ P +TYN++I CK+G I EA KL M+
Sbjct: 473 TNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEA 532
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRA 199
G PDS ++ ++I G + + D A
Sbjct: 533 NGMDPDSYTYTSLIHGECIADNVDEA 558
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 41/211 (19%)
Query: 26 REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
R +DS +K + V+ + ++ GLC ++++ +L + +GI E TYN +I+
Sbjct: 214 RMVDSGVK----ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIIN-A 268
Query: 86 WEKQGRFSAM-ALLQTLERDKY-----------------------------------ELN 109
+ KQ FS + +L+ +++D E +
Sbjct: 269 YVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESD 328
Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
+ VY+ +I CR G + A D+L+EKGL P TY LI+G+CK G + A+ L+
Sbjct: 329 VHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMN 388
Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
+M+ KG FNT+I G+ K D AS
Sbjct: 389 EMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
Query: 19 INGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78
+ G+ K+ + D + + + + S+ NG ++ +A +LFD+M +GI +++ Y
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNG-----KMSDAEKLFDEMRERGIESDVHVY 332
Query: 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138
LI N K A L L + Y +IDG+C+VG A ++++
Sbjct: 333 TSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQS 392
Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
KG+ V +N LI+G C+KGM+ EA + M++KG D + NT+ F D
Sbjct: 393 KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDE 452
Query: 199 ASSFLKKNM 207
A +L + M
Sbjct: 453 AKQWLFRMM 461
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 1 FDLTEQR-FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCT 52
+D+ EQ+ F+ + + +++ D A ++ G+ L Y++LI+ C
Sbjct: 422 YDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCK 481
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIE 111
++EA LF +M ++G+ +TYN +I+ + KQG+ A L +E + + +
Sbjct: 482 EGNVEEAKRLFVEMSSKGVQPNAITYNVMIY-AYCKQGKIKEARKLRANMEANGMDPDSY 540
Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
Y+ +I G C +EA + ++ KGL VTY ++I+GL K G EA L +M
Sbjct: 541 TYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEM 600
Query: 172 KEKGCFPDSTSFNTVI 187
K KG D+ + +I
Sbjct: 601 KRKGYTIDNKVYTALI 616
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%)
Query: 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
KG+ + Y+ +I C ++KEA +L M A G+ + TY LIH
Sbjct: 498 KGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDE 557
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
AM L + + N Y+++I GL + G+ +EA D++ KG Y LI
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIG 617
Query: 154 GL 155
+
Sbjct: 618 SM 619
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
++ + F+ YG I+G+ KI +D A K I L+V +YSSLI+G
Sbjct: 612 EMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
R+ EA + ++++ +G+T L T+N L+ + + A+ Q+++ K N Y
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++I+GLC+V ++ +A ++ ++G+ P ++Y +I+GL K G I EA L + K
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
G PDS +N +I+G N A S ++
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 14 VYGIRINGMCKIREIDSAIKKGICLD-------VFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I +CK +D A++ L+ + Y+++I G + + EA L ++
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
A+G ++ YN ++ K G+ A+ + + +++D N+ Y+++ID LCR G+
Sbjct: 335 RAKGSIPSVIAYNCIL-TCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGK 392
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ A + D + + GL P V T NI+++ LCK + EA + +M K C PD +F +
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452
Query: 186 VIQGF 190
+I G
Sbjct: 453 LIDGL 457
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 7/202 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSA------IKKGICL-DVFVYSSLINGLCTFNRLKEAVELF 63
N I ++ +CK +++D A + +C D + SLI+GL R+ +A +++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVY 470
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+KM+ + Y LI + + + + + + ++++ + +D + +
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 530
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
G E+ R +++ + VP +Y+ILI+GL K G E +L MKE+GC D+ ++
Sbjct: 531 GEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590
Query: 184 NTVIQGFLVKNETDRASSFLKK 205
N VI GF + ++A L++
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEE 612
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMAL 97
D YS LI+GL E ELF M QG + YN +I D + K G+ + A L
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCKCGKVNKAYQL 609
Query: 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
L+ ++ +E + Y VIDGL ++ R +EA ++ K + VV Y+ LI+G K
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
G I EA +L ++ +KG P+ ++N+++ + E + A
Sbjct: 670 VGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA 711
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQT 100
Y++LI N + LF +M G + + LI + K+GR SA++LL
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR-GFAKEGRVDSALSLLDE 228
Query: 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160
++ + +I +Y++ ID +VG+ + A K ++ GL P VTY +I LCK
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288
Query: 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
+ EA ++ +++ P + ++NT+I G+ + D A S L++
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 19 INGMCKIREIDSAIK------KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
I+G+ K+ +D A K C + VY+SLI R ++ +++ M+ Q
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNC 513
Query: 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131
+ +L N + ++ A+ + ++ ++ + YS++I GL + G E +
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYE 573
Query: 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191
+ E+G V YNI+I+G CK G + +A +LL +MK KG P ++ +VI G
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633
Query: 192 VKNETDRA 199
+ D A
Sbjct: 634 KIDRLDEA 641
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 7 RFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEA 59
+F+ F Y I + D + + G V ++++LI G R+ A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVID 118
+ L D+M + + A++V YN I D++ K G+ A +E + + + Y+ +I
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCI-DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281
Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
LC+ R +EA + + L + VP YN +I G G EA LL + + KG P
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341
Query: 179 DSTSFNTVIQGFLVKNETDRA 199
++N ++ + D A
Sbjct: 342 SVIAYNCILTCLRKMGKVDEA 362
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
+F+++ A+ + +Y+ LIH + L +++ L+ Y++VIDG C
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
+ G+ +A + L+++ KG P VVTY +I+GL K + EA L + K K +
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVV 658
Query: 182 SFNTVIQGFLVKNETDRASSFLKKNM 207
++++I GF D A L++ M
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELM 684
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
+ E + N YGI ING+CK+R+ + A K+G+ Y+++I+GL
Sbjct: 718 MKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGN 777
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+ EA LFD+ A G + YN +I A +L + R ++ + +
Sbjct: 778 IAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVV 837
Query: 116 VIDGLCRVGRWEEA 129
++D L + E+A
Sbjct: 838 LLDTLHKNDCLEQA 851
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%)
Query: 97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
++Q + + K+ Y+ +I V + Q+ E G P V + LI G
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214
Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
K+G + A LL +MK D +N I F + D A F +
Sbjct: 215 KEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 17 IRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
I I+ +CK R + A++ +GI +V YSSLI GLC RL +A +M ++
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257
Query: 70 GITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128
I ++T++ LI D + K+G+ S + ++ + + + + N+ YS +I GLC R +E
Sbjct: 258 KINPNVITFSALI-DAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 316
Query: 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188
A K LD + KG P VVTY+ L NG K + + KLL M ++G ++ S NT+I+
Sbjct: 317 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIK 376
Query: 189 GFLVKNETDRA 199
G+ + D A
Sbjct: 377 GYFQAGKIDLA 387
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 7/200 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
+ + I +N C+ + SA+ K GI D+ SSL+NG C N +K+AV +
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVA 181
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
+M GI ++V LI + + A+ +L+ ++ N+ YS +I GLC+
Sbjct: 182 GQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKS 241
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
GR +A ++L ++ K + P V+T++ LI+ K+G + + D + M + P+ ++
Sbjct: 242 GRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTY 301
Query: 184 NTVIQGFLVKNETDRASSFL 203
+++I G + N D A L
Sbjct: 302 SSLIYGLCMHNRVDEAIKML 321
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ + N Y I G+C +D AIK KG +V YS+L NG +R
Sbjct: 289 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 348
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
+ + ++L D M +G+ A V+ N LI ++ A+ + + + NI Y++
Sbjct: 349 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 408
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
V+ GL G E+A + + + + ++TY I+I+G+CK M+ EA L ++K K
Sbjct: 409 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 468
Query: 176 CFPDSTSFNTVIQGFL---VKNETDRASSFLKKNM 207
PD ++ +I ++ E D + F +K++
Sbjct: 469 VEPDFKAYTIMIAELNRAGMRTEADALNRFYQKHV 503
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 92/179 (51%)
Query: 26 REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
+ I++A I D++ + L+N C + A+ KM+ GI ++VT + L++
Sbjct: 109 KRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGF 168
Query: 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
A+ + +E+ + ++ V +++ID LC+ A + L ++ ++G+ P V
Sbjct: 169 CLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNV 228
Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
VTY+ LI GLCK G + +A++ L +M K P+ +F+ +I + + + + S K
Sbjct: 229 VTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYK 287
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 7/203 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N +VY I+G CK + A+ + DVF Y+ LINGLC +++ EA LF
Sbjct: 338 NLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLF 397
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
KM + I TYN LIH ++ A+ L + E NI +S +IDG C V
Sbjct: 398 QKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNV 457
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
+ A +++ KG+VP VVTY LI+ K+ + EA +L M E G P+ +F
Sbjct: 458 RDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 517
Query: 184 NTVIQGFLVKNETDRASSFLKKN 206
++ GF + A F ++N
Sbjct: 518 ACLVDGFWKEGRLSVAIDFYQEN 540
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++T K N ++Y I I +C+ +++ A K G+ +++ YS++I+G C
Sbjct: 224 EMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTG 283
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+++A L+ +++ + +V + L+ + + +A +L + + + N+ VY+
Sbjct: 284 NVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYN 343
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+I G C+ G EA L ++ L P V TY ILINGLC + + EA++L +MK +
Sbjct: 344 CLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNE 403
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
FP S ++N++I G+ + ++A
Sbjct: 404 RIFPSSATYNSLIHGYCKEYNMEQA 428
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%)
Query: 11 NFHVYGIRINGMCKIREIDSA--IKKGICL-----DVFVYSSLINGLCTFNRLKEAVELF 63
N + Y I+G CK + A + K I + +V V+ +L++G C L A LF
Sbjct: 268 NLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLF 327
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
MV G+ L YN LIH + + A+ LL +E ++ Y+++I+GLC
Sbjct: 328 VHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIE 387
Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
+ EA + ++ + + P TYN LI+G CK+ + +A L +M G P+ +F
Sbjct: 388 DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITF 447
Query: 184 NTVIQGF 190
+T+I G+
Sbjct: 448 STLIDGY 454
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 2/179 (1%)
Query: 28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
+D GI +V++Y+ I LC N+++EA ++F+ M G+ L TY+ +I D +
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMI-DGYC 280
Query: 88 KQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
K G A L + + + N+ V+ ++DG C+ AR + + G+ P +
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340
Query: 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
YN LI+G CK G ++EA LL +M+ PD ++ +I G ++++ A+ +K
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQK 399
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 11/180 (6%)
Query: 19 INGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNR--LKEAVELFDKMVAQ 69
+NG+ + R DS I +G+ DV +Y L C F + + +L D+M +
Sbjct: 171 LNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQ--CCFKQGLYSKKEKLLDEMTSL 228
Query: 70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129
GI + Y I D A + + +++ N+ YS +IDG C+ G +A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288
Query: 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
++ L+P VV + L++G CK ++ A L V M + G P+ +N +I G
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFN 54
++T + N + I+G C +R+I +A+ KGI DV Y++LI+
Sbjct: 434 EMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEA 493
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVY 113
+KEA+ L+ M+ GI T+ L+ W K+GR S A+ Q + + N +
Sbjct: 494 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFW-KEGRLSVAIDFYQENNQQRSCWNHVGF 552
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I+GLC+ G A + + G+ P + +Y ++ G ++ I + L M +
Sbjct: 553 TCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIK 612
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206
G P+ N ++ F N +++ FL +
Sbjct: 613 TGILPN-LLVNQLLARFYQANGYVKSACFLTNS 644
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
Query: 26 REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85
RE+ + CL S++NGL R + M+++G+ ++ Y L
Sbjct: 156 REMKCSPDSKACL------SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCC 209
Query: 86 WEKQGRFSAMA-LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144
+ KQG +S LL + + N+ +Y++ I LCR + EEA K + + + G++P
Sbjct: 210 F-KQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPN 268
Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
+ TY+ +I+G CK G + +A L ++ P+ F T++ GF E A S
Sbjct: 269 LYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLF 327
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168
++ +Y ++ + G + + K LD+++ G+ P V Y I I LC+ + EA+K+
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257
Query: 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
MK+ G P+ +++ +I G+ +A K+
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKE 294
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 7/204 (3%)
Query: 9 KGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVE 61
+ N YG ++G CK ++ A K +G + VY +LI+GLC +L EA E
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
+ +M G A L TY+ LI ++ + + A +L + + N+ +Y+ +IDGLC
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755
Query: 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181
+VG+ +EA K + + EKG P VVTY +I+G G I +LL +M KG P+
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815
Query: 182 SFNTVIQGFLVKNETDRASSFLKK 205
++ +I D A + L++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEE 839
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 6 QRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKE 58
Q F + Y +N +C +++ A + G+ DV+ Y+ +++ C +++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536
Query: 59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
A + F++M G T +VTY LIH + + A L +T+ + NI YS +ID
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596
Query: 119 GLCRVGRWEEA-------------------RKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
G C+ G+ E+A K+ D SE+ P VVTY L++G CK
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER---PNVVTYGALLDGFCKSH 653
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+ EA KLL M +GC P+ ++ +I G + D A
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 693
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 86/174 (49%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+ G+ L+ SS LC+ + ++A + +M+ QG + TY+ +++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
A L + ++R ++ Y++++D C+ G E+ARK +++ E G P VVTY L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
I+ K + A++L M +GC P+ +++ +I G + ++A ++
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 42/239 (17%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ E N +Y I+G+CK+ + D A K KG +V Y+++I+G +
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLI--------------------HDNWEKQGR---- 91
++ +EL ++M ++G+ VTY LI +W
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854
Query: 92 ---------FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS--EKG 140
++ LL + +D + VY L+ID L + R E A + L++++
Sbjct: 855 VIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 914
Query: 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
LV TYN LI LC + A +L +M +KG P+ SF ++I+G ++ A
Sbjct: 915 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 77 TYNPLIHDNWEKQGRFSAMAL------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130
TYN LI + K R + +L L L D + L YSL C+VG+W EA
Sbjct: 237 TYNCLIQ-AFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSL-----CKVGKWREA- 289
Query: 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
L + + VP V Y LI+GLC+ + EA L +M+ C P+ +++T++ G
Sbjct: 290 --LTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 191 LVKNETDRASSFLKKNM 207
L K + R L M
Sbjct: 348 LNKKQLGRCKRVLNMMM 364
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMV-----AQGITAELVTYNPLIHDNWEKQGRFSAMA 96
Y+ LI +RL A + +M G T Y+ W + A+
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWRE-----ALT 291
Query: 97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156
L++T + + + Y+ +I GLC +EEA L+++ +P VVTY+ L+ G
Sbjct: 292 LVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348
Query: 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
K + ++L M +GC+P FN+++ + + A LKK
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 397
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
D Y+ LI+GLC + +EA++ ++M A +VTY+ L+ K+ +L
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360
Query: 99 QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158
+ + + ++++ ++ C G A K L ++ + G +PG V YNILI +C
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420
Query: 159 GMIMEADKLLVQMKEKG 175
+ D L+ + EK
Sbjct: 421 KDSLNCD--LLDLAEKA 435
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 43 YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
Y +I G FN+ E++ L D+ + Q TA ++ L+ DN K R MAL
Sbjct: 852 YRKVIEG---FNKEFIESLGLLDE-IGQDDTAPFLSVYRLLIDNLIKAQRLE-MALRLLE 906
Query: 102 ERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
E + + Y+ +I+ LC + E A + ++++KG++P + ++ LI GL +
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966
Query: 158 KGMIMEADKLL 168
I EA LL
Sbjct: 967 NSKISEALLLL 977
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
Y+SLI LC N+++ A +LF +M +G+ E+ ++ LI + A+ LL
Sbjct: 921 TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
Y+ VY+ ++D + R + + L Q+ + N+L+ C+ G A
Sbjct: 161 YKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIAL 220
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200
+ L ++K+ P +++N +IQ FL + D AS
Sbjct: 221 EELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSAS 255
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ +Q F+ Y I+G+ +I++A +KGI LD Y+ LING C
Sbjct: 352 EMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHG 411
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
K+A L D+M+ GI TY LI+ K A L + + + ++ + +
Sbjct: 412 DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMN 471
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
++DG C +G + A L ++ + P VTYN L+ GLC +G EA +L+ +MK +
Sbjct: 472 TLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRA 199
G PD S+NT+I G+ K +T A
Sbjct: 532 GIKPDHISYNTLISGYSKKGDTKHA 556
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 14 VYGIRINGMCKIREI-------DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I ING C+ + D + GI F Y+SLI LC N+ +EA ELF+K+
Sbjct: 399 TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKV 458
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V +G+ +LV N L+ + A +LL+ ++ + Y+ ++ GLC G++
Sbjct: 459 VGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKF 518
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
EEAR+ + ++ +G+ P ++YN LI+G KKG A + +M G P ++N +
Sbjct: 519 EEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNAL 578
Query: 187 IQGFLVKNETDRASSFLKK 205
++G E + A L++
Sbjct: 579 LKGLSKNQEGELAEELLRE 597
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 2 DLTEQRFKGNFHVYGIRINGMC---KIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLK 57
++ + F+ + Y ++ MC + E+ +K+ G+ D Y+ LI G L+
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLE 344
Query: 58 EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117
A D+MV QG+ TYN LIH + + +A L++ + L+ Y+++I
Sbjct: 345 MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILI 404
Query: 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177
+G C+ G ++A D++ G+ P TY LI LC+K EAD+L ++ KG
Sbjct: 405 NGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMK 464
Query: 178 PDSTSFNTVIQGFLVKNETDRASSFLKK 205
PD NT++ G DRA S LK+
Sbjct: 465 PDLVMMNTLMDGHCAIGNMDRAFSLLKE 492
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKK-----------GICLDVFVYSSLINGL 50
D+ K N + + I IN +CK + +KK GI + Y++L+ G
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCK----EGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGF 270
Query: 51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE-KQGRFSAMALLQTLERDKYELN 109
R++ A + +M ++G ++ TYNP++ +W +GR A +L+ ++ +
Sbjct: 271 SLRGRIEGARLIISEMKSKGFQPDMQTYNPIL--SWMCNEGR--ASEVLREMKEIGLVPD 326
Query: 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169
Y+++I G G E A D++ ++G+VP TYN LI+GL + I A+ L+
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+++EKG DS ++N +I G+ + +A
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHGDAKKA 416
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 23 CKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
C++R +D AI+ KG + ++ L NR++ A + M I + +
Sbjct: 166 CQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225
Query: 76 VTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134
T+N +I + K+G+ A L +E + I Y+ ++ G GR E AR +
Sbjct: 226 YTFNIMI-NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIIS 284
Query: 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189
++ KG P + TYN +++ +C +G A ++L +MKE G PDS S+N +I+G
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNILIRG 336
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
++ L+ C + EA+E F M +G + T N ++ +A
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214
Query: 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159
+ R + + N+ ++++I+ LC+ G+ ++A+ L + G+ P +VTYN L+ G +G
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRG 274
Query: 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
I A ++ +MK KG PD ++N ++ NE RAS L++
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNPILSWMC--NE-GRASEVLRE 317
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 14 VYGIRINGMC------KIREIDSAIKK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y + G+C + RE+ +K+ GI D Y++LI+G K A + D+M
Sbjct: 504 TYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEM 563
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
++ G L+TYN L+ + Q A LL+ ++ + N + VI+ +
Sbjct: 564 LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAM 617
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 8 FKGNFHVYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAV 60
F+ + +G +NG C + +D + G +V +Y+++I+ LC ++ A+
Sbjct: 145 FEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
++ M GI ++VTYN LI + + +L + R ++ +S +ID
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264
Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
+ G+ EA+K+ +++ ++ + P +VTYN LINGLC G++ EA K+L + KG FP++
Sbjct: 265 GKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNA 324
Query: 181 TSFNTVIQGFLVKNETD 197
++NT+I G+ D
Sbjct: 325 VTYNTLINGYCKAKRVD 341
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 9/191 (4%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAV 60
++ N +Y I+ +C+ ++++A+ K GI DV Y+SLI L +
Sbjct: 180 YEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSA 239
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDG 119
+ M+ GI+ +++T++ LI D + K+G+ A + + NI Y+ +I+G
Sbjct: 240 RILSDMMRMGISPDVITFSALI-DVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
LC G +EA+K L+ L KG P VTYN LING CK + + K+L M G D
Sbjct: 299 LCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGD 358
Query: 180 STSFNTVIQGF 190
+ ++NT+ QG+
Sbjct: 359 TFTYNTLYQGY 369
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 9/212 (4%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
++ ++ N Y ING+C +D A + KG + Y++LING C
Sbjct: 279 EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAK 338
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM-ALLQTLERDKYELNIEVY 113
R+ + +++ M G+ + TYN L + + + G+FSA +L + ++ +
Sbjct: 339 RVDDGMKILCVMSRDGVDGDTFTYNTL-YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTF 397
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
++++DGLC G+ +A +L+ L + V G++TYNI+I GLCK + +A L +
Sbjct: 398 NILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLAL 457
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
KG PD ++ T++ G K A +K
Sbjct: 458 KGVSPDVITYITMMIGLRRKRLWREAHELYRK 489
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 10/185 (5%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
L + F N Y ING CK + +D +K G+ D F Y++L G C +
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGK 374
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
A ++ +MV+ G+ ++ T+N L+ D G+ A+ L+ L++ K + I Y+
Sbjct: 375 FSAAEKVLGRMVSCGVHPDMYTFNILL-DGLCDHGKIGKALVRLEDLQKSKTVVGIITYN 433
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM-KE 173
++I GLC+ + E+A L+ KG+ P V+TY ++ GL +K + EA +L +M KE
Sbjct: 434 IIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKE 493
Query: 174 KGCFP 178
G P
Sbjct: 494 DGLMP 498
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
F VYG + ++ + I++ + ++ Y+SLINGLC L EA ++ + +V
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
++G VTYN LI+ + + M +L + RD + + Y+ + G C+ G++
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFS 376
Query: 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
A K L ++ G+ P + T+NIL++GLC G I +A L +++ ++N +I
Sbjct: 377 AAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436
Query: 188 QGFLVKNETDRA 199
+G ++ + A
Sbjct: 437 KGLCKADKVEDA 448
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%)
Query: 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94
GI D++ +++LI+ C RL A+ KM+ G +VT+ L++ + A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
M+L+ + YE N+ +Y+ +ID LC G+ A L + + G+ P VVTYN LI
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
L G + ++L M G PD +F+ +I +
Sbjct: 229 LFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%)
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
+ +A+ LF M +V ++ L+ + + ++L + LE ++ ++
Sbjct: 59 KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118
Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+ID CR R A L ++ + G P +VT+ L+NG C EA L+ Q+
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178
Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
G P+ +NT+I K + + A LK
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLK 208
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%)
Query: 15 YGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
Y I ING+CK + A +G+ L+ Y+SLINGLC L EA+ LFD +
Sbjct: 658 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 717
Query: 68 AQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
G+ VTY LI DN K+G F A LL ++ NI +Y+ ++DG C++G+
Sbjct: 718 NIGLVPSEVTYGILI-DNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQT 776
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
E+A + + + + P T + +I G CKKG + EA + + K+K D F +
Sbjct: 777 EDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFL 836
Query: 187 IQGFLVKNETDRASSFLKK 205
I+GF K + A L++
Sbjct: 837 IKGFCTKGRMEEARGLLRE 855
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 91/164 (55%)
Query: 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
+DV Y+ +INGLC L +A+ L ++G+T +TYN LI+ ++ A+ L
Sbjct: 653 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRL 712
Query: 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
+LE + Y ++ID LC+ G + +A K LD + KGLVP ++ YN +++G CK
Sbjct: 713 FDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCK 772
Query: 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201
G +A +++ + PD+ + +++I+G+ K + + A S
Sbjct: 773 LGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALS 816
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N Y ++ +C++ ++D +G D YS+ I+G L +A+
Sbjct: 206 NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 265
Query: 64 DKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCR 122
+MV +G+ ++V+Y+ LI D K+G A+ LL + ++ E N+ Y+ +I GLC+
Sbjct: 266 REMVEKGMNRDVVSYSILI-DGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCK 324
Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
+G+ EEA +++ G+ Y LI+G+C+KG + A +L M+++G P +
Sbjct: 325 MGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILT 384
Query: 183 FNTVIQGFLVKNETDRA 199
+NTVI G + A
Sbjct: 385 YNTVINGLCMAGRVSEA 401
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 3/189 (1%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA--IKKGICLDVFVYSSLINGLCTFNRLKEA 59
D+ ++ + + Y ING+C + A + KG+ DV YS+L++ +
Sbjct: 372 DMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAV 431
Query: 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119
+E+ + + I +LV N L+ A AL + + + Y+ +I G
Sbjct: 432 LEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKG 491
Query: 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179
C+ G+ EEA + ++L K V V YN +I+ LCKKGM+ A ++L+++ EKG + D
Sbjct: 492 YCKTGQIEEALEMFNEL-RKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 550
Query: 180 STSFNTVIQ 188
+ T++
Sbjct: 551 IHTSRTLLH 559
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y I+G+C+ ++ A ++GI + Y+++INGLC R+ EA E
Sbjct: 349 LYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADE----- 403
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
V++G+ +++TY+ L+ + Q + + + + K +++ + ++++ +G +
Sbjct: 404 VSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAY 463
Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
EA + E L P TY +I G CK G I EA ++ +++ K + +N +
Sbjct: 464 GEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR-KSSVSAAVCYNRI 522
Query: 187 IQGFLVKNETDRASSFL 203
I K D A+ L
Sbjct: 523 IDALCKKGMLDTATEVL 539
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 40/228 (17%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRL 56
+ E + Y I G CK +I+ A+ +K Y+ +I+ LC L
Sbjct: 473 MPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYNRIIDALCKKGML 532
Query: 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116
A E+ ++ +G+ ++ T L+H G + L+ LE+ ++ + + +
Sbjct: 533 DTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDA 592
Query: 117 IDGLCRVGRWEEARKKLDQLSEKGLV---PG----------------------------- 144
I LC+ G +E A + + KGL P
Sbjct: 593 ILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTLSS 652
Query: 145 --VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
V+ Y I+INGLCK+G +++A L K +G ++ ++N++I G
Sbjct: 653 MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGL 700
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 15 YGIRINGMCKI-------REIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
YGI I+ +CK + +DS + KG+ ++ +Y+S+++G C + ++A+ + + +
Sbjct: 728 YGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKM 787
Query: 68 AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127
+T + T + +I +K A+++ + + + +I G C GR E
Sbjct: 788 MGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRME 847
Query: 128 EARKKLDQL 136
EAR L ++
Sbjct: 848 EARGLLREM 856
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDG 119
L D + G +T+ LI+ EK +A+ +L+ + Y + V S VI G
Sbjct: 121 LRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISG 180
Query: 120 LCRVGRWEEARKKLDQLSEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
C++G+ E A + + G LVP +VTY L++ LC+ G + E L+ +++++G
Sbjct: 181 FCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEF 240
Query: 179 DSTSFNTVIQGFL 191
D ++ I G+
Sbjct: 241 DCVFYSNWIHGYF 253
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 69/188 (36%)
Query: 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97
D FV S++I+G C + + A+ F+ V G+
Sbjct: 169 FDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVP----------------------- 205
Query: 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR---KKLD-------------------- 134
N+ Y+ ++ LC++G+ +E R ++L+
Sbjct: 206 -----------NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFK 254
Query: 135 ------------QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
++ EKG+ VV+Y+ILI+GL K+G + EA LL +M ++G P+ +
Sbjct: 255 GGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLIT 314
Query: 183 FNTVIQGF 190
+ +I+G
Sbjct: 315 YTAIIRGL 322
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
+ R + ++ G + L + + + + Q + L+ + +N +
Sbjct: 4 YPRTSSGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRI 63
Query: 113 YSLVIDGLCRVGRWEEARKKLD-QLSEKGLVPGVVTYNILINGLC------KKGMIMEAD 165
YS+V + R+E+A K ++ +S+ + P + LI+G KG+++ D
Sbjct: 64 YSIVSWAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRD 123
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204
L + G FP S +F ++I F+ K E D A L+
Sbjct: 124 CL----RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLE 158
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 18/145 (12%)
Query: 11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
N +Y ++G CK+ + + A++ + D F SS+I G C ++EA+ +F
Sbjct: 759 NIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVF 818
Query: 64 DKMVAQGITAELVTYNPLIHD------NWEKQGRFSAMALLQTLERDKYELNIEVY-SLV 116
+ + I+A+ + LI E +G M + +++ + ++ E+ S
Sbjct: 819 TEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESES 878
Query: 117 IDG----LCRVGRWEEARKKLDQLS 137
I G LC GR +A K LD++S
Sbjct: 879 IRGFLVELCEQGRVPQAIKILDEIS 903
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
+ EQ N + Y ING CK A + +G +++ Y++ I+ LC +R
Sbjct: 384 MKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 443
Query: 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
EA EL +K + G+ A+ VTY LI + ++ A+A + + +E ++ + ++
Sbjct: 444 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNI 503
Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
+I CR + +E+ + + GL+P TY +I+ CK+G I A K MK G
Sbjct: 504 LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHG 563
Query: 176 CFPDSTSFNTVIQGFLVKNETDRA 199
C PDS ++ ++I G K+ D A
Sbjct: 564 CVPDSFTYGSLISGLCKKSMVDEA 587
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Query: 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102
++SLI+GLC +K+A E+ ++MV G + T+ LI ++ A L L
Sbjct: 290 FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 349
Query: 103 R-DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161
R D Y+ N+ Y+ +I G C+ + A ++ E+GL P V TY LING CK G
Sbjct: 350 RSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSF 409
Query: 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
A +L+ M ++G P+ ++N I K+ A L K
Sbjct: 410 GRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 453
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 5/181 (2%)
Query: 24 KIREID----SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79
KI+E D I++G D + ++ LC + A+ F KM+ G L+ +
Sbjct: 232 KIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFT 291
Query: 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA-RKKLDQLSE 138
LI +K A +L+ + R+ ++ N+ ++ +IDGLC+ G E+A R L +
Sbjct: 292 SLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 351
Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
P V TY +I G CK+ + A+ L +MKE+G FP+ ++ T+I G R
Sbjct: 352 DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGR 411
Query: 199 A 199
A
Sbjct: 412 A 412
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 8 FKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAV 60
FK N + I+G+CK I A ++ G +V+ +++LI+GLC ++A
Sbjct: 283 FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAF 342
Query: 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-------AMALLQTLERDKYELNIEVY 113
LF K+V TY P +H G + A L ++ N+ Y
Sbjct: 343 RLFLKLVRSD------TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTY 396
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173
+ +I+G C+ G + A + ++ + ++G +P + TYN I+ LCKK EA +LL +
Sbjct: 397 TTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFS 456
Query: 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFL 203
G D ++ +IQ +N+ ++A +F
Sbjct: 457 CGLEADGVTYTILIQEQCKQNDINQALAFF 486
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 10/198 (5%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICL--------DVFVYSSLINGLCTF 53
++ +K N + + I+G+CK + A + + L +V Y+S+I G C
Sbjct: 312 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 371
Query: 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEV 112
++L A LF +M QG+ + TY LI+ + K G F A L+ + + + NI
Sbjct: 372 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC-KAGSFGRAYELMNLMGDEGFMPNIYT 430
Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
Y+ ID LC+ R EA + L++ GL VTY ILI CK+ I +A +M
Sbjct: 431 YNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMN 490
Query: 173 EKGCFPDSTSFNTVIQGF 190
+ G D N +I F
Sbjct: 491 KTGFEADMRLNNILIAAF 508
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 1/173 (0%)
Query: 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93
+G+ D Y ++ G +++EA M+ +G + T ++ E
Sbjct: 211 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 270
Query: 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
A+ + + ++ N+ ++ +IDGLC+ G ++A + L+++ G P V T+ LI+
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 330
Query: 154 GLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVKNETDRASSFLKK 205
GLCK+G +A +L +++ + P+ ++ ++I G+ +++ +RA +
Sbjct: 331 GLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 383
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101
V ++ RL EAV + M QG+T +T N ++ E + L++
Sbjct: 149 VMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVE-------LGLIEYA 201
Query: 102 ERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
E E+++ Y L++ G R G+ +EA + L + ++G +P T +++
Sbjct: 202 ENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 261
Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
LC+ G++ A +M + G P+ +F ++I G K +A L++
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 312
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 14 VYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I I CK +I+ A+ K G D+ + + LI C ++KE+ LF +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
V+ G+ TY +I + K+G A+ ++R + Y +I GLC+
Sbjct: 525 VSLGLIPTKETYTSMI-SCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 583
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
+EA K + + ++GL P VT L CK+ A LL + +K
Sbjct: 584 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKK 632
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 14 VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
Y I+ CK +ID A+K G D F Y SLI+GLC + + EA +L++ M
Sbjct: 535 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 594
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121
+ +G++ VT L ++ ++ +AM LL+ L++ +L I ++ LC
Sbjct: 595 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDK---KLWIRTVRTLVRKLC 646
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 14 VYGIRINGMCKIRE-------IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
+Y +NG CK + +D I++G+ D Y++LI+G C ++ A+E+ +M
Sbjct: 382 LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441
Query: 67 VAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
GI + V ++ L+ K+GR A L+ + R + + Y++++D C+ G
Sbjct: 442 DQNGIELDRVGFSALVC-GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGD 500
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+ K L ++ G VP VVTYN+L+NGLCK G + AD LL M G PD ++NT
Sbjct: 501 AQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNT 560
Query: 186 VIQG 189
+++G
Sbjct: 561 LLEG 564
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 14 VYGIRINGMCKIREID-------SAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
++ I+G + EID + KG+ D+ +Y++L+NG C L A + D M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Query: 67 VAQGITAELVTYNPLIHDNWEKQGRF-SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125
+ +G+ + +TY LI D + + G +A+ + + ++++ EL+ +S ++ G+C+ GR
Sbjct: 407 IRRGLRPDKITYTTLI-DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465
Query: 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185
+A + L ++ G+ P VTY ++++ CKKG KLL +M+ G P ++N
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525
Query: 186 VIQGF 190
++ G
Sbjct: 526 LLNGL 530
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 2 DLTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFN 54
++T++ + + ING CK+ +D K DVF YS+LIN LC N
Sbjct: 265 EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKEN 324
Query: 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA-LLQTLERDKYELNIEVY 113
++ A LFD+M +G+ V + LIH + + G M Q + + +I +Y
Sbjct: 325 KMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH-SRNGEIDLMKESYQKMLSKGLQPDIVLY 383
Query: 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING------------------- 154
+ +++G C+ G AR +D + +GL P +TY LI+G
Sbjct: 384 NTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ 443
Query: 155 ----------------LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198
+CK+G +++A++ L +M G PD ++ ++ F K +
Sbjct: 444 NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQT 503
Query: 199 ASSFLKK 205
LK+
Sbjct: 504 GFKLLKE 510
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 83/159 (52%)
Query: 32 IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91
+ G L+V+V++ L+N C + +A ++FD++ + + +V++N LI+ +
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291
Query: 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151
L +E+ + ++ YS +I+ LC+ + + A D++ ++GL+P V + L
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351
Query: 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
I+G + G I + +M KG PD +NT++ GF
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 58/94 (61%)
Query: 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165
+ LN+ V++++++ C+ G +A+K D+++++ L P VV++N LING CK G + E
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
+L QM++ PD +++ +I +N+ D A
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGA 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,651,761
Number of Sequences: 539616
Number of extensions: 2773110
Number of successful extensions: 11581
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 6618
Number of HSP's gapped (non-prelim): 2693
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)