Query 045498
Match_columns 207
No_of_seqs 321 out of 1107
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 02:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-41 2.2E-46 277.5 24.7 204 3-206 463-675 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.2E-41 2.6E-46 277.1 24.6 204 3-206 533-745 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.7E-39 3.6E-44 260.2 19.7 200 3-206 250-452 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.4E-37 7.4E-42 247.0 20.4 194 9-206 287-488 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.9E-37 1.3E-41 250.5 20.5 204 3-206 314-615 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 9.9E-37 2.1E-41 249.2 20.2 200 3-206 213-415 (857)
7 PRK11788 tetratricopeptide rep 99.8 4.4E-16 9.6E-21 117.8 21.7 191 13-206 108-308 (389)
8 PRK11788 tetratricopeptide rep 99.7 2.2E-15 4.7E-20 114.1 21.6 193 10-207 139-345 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 1.8E-14 3.9E-19 119.1 23.3 192 11-207 702-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 7.5E-14 1.6E-18 115.5 23.5 191 11-206 600-796 (899)
11 PF13041 PPR_2: PPR repeat fam 99.7 5.1E-16 1.1E-20 82.2 6.0 50 38-87 1-50 (50)
12 PF13041 PPR_2: PPR repeat fam 99.6 1.1E-15 2.3E-20 81.0 6.4 49 143-191 1-49 (50)
13 TIGR02521 type_IV_pilW type IV 99.6 6.5E-12 1.4E-16 88.1 23.3 193 11-206 30-229 (234)
14 KOG4422 Uncharacterized conser 99.6 8.9E-13 1.9E-17 96.6 17.7 194 9-206 204-459 (625)
15 KOG4422 Uncharacterized conser 99.6 7.5E-13 1.6E-17 96.9 17.0 168 33-204 200-380 (625)
16 PRK15174 Vi polysaccharide exp 99.5 2.8E-11 6.1E-16 97.2 22.7 93 110-205 284-377 (656)
17 TIGR02521 type_IV_pilW type IV 99.5 4E-11 8.7E-16 84.0 20.7 167 37-206 28-195 (234)
18 PF13429 TPR_15: Tetratricopep 99.5 1.7E-12 3.6E-17 94.1 13.4 191 12-206 78-274 (280)
19 PRK15174 Vi polysaccharide exp 99.5 6.1E-11 1.3E-15 95.3 22.9 154 50-206 187-344 (656)
20 TIGR00990 3a0801s09 mitochondr 99.5 8.9E-11 1.9E-15 94.0 23.0 164 40-206 399-568 (615)
21 PRK09782 bacteriophage N4 rece 99.4 1.7E-10 3.7E-15 95.6 23.7 192 10-206 507-703 (987)
22 TIGR00990 3a0801s09 mitochondr 99.4 2.1E-10 4.5E-15 91.9 23.3 191 13-206 332-534 (615)
23 PF13429 TPR_15: Tetratricopep 99.4 7.8E-12 1.7E-16 90.7 11.2 186 16-206 48-240 (280)
24 PRK10747 putative protoheme IX 99.3 2.5E-09 5.4E-14 81.3 22.7 181 19-206 160-387 (398)
25 COG2956 Predicted N-acetylgluc 99.3 6.3E-10 1.4E-14 79.0 17.8 192 14-207 71-276 (389)
26 PRK09782 bacteriophage N4 rece 99.3 1.4E-09 3.1E-14 90.2 22.6 189 11-206 476-669 (987)
27 PRK12370 invasion protein regu 99.3 3.8E-09 8.3E-14 83.6 23.2 150 54-206 318-467 (553)
28 KOG4318 Bicoid mRNA stability 99.3 4.1E-11 8.9E-16 94.7 11.0 188 3-196 16-287 (1088)
29 PRK12370 invasion protein regu 99.3 4.9E-09 1.1E-13 83.0 22.8 174 26-205 318-498 (553)
30 PRK11447 cellulose synthase su 99.3 3.9E-09 8.4E-14 90.2 22.2 130 75-206 603-737 (1157)
31 KOG4626 O-linked N-acetylgluco 99.2 8.4E-10 1.8E-14 84.8 15.6 157 43-205 289-447 (966)
32 PRK11447 cellulose synthase su 99.2 5.3E-09 1.2E-13 89.4 21.9 189 15-206 464-697 (1157)
33 TIGR00540 hemY_coli hemY prote 99.2 2.9E-08 6.2E-13 75.9 23.7 60 147-206 337-396 (409)
34 KOG4626 O-linked N-acetylgluco 99.2 1.3E-09 2.8E-14 83.8 15.8 188 13-206 287-482 (966)
35 PRK10747 putative protoheme IX 99.2 2.1E-08 4.6E-13 76.3 21.9 181 20-206 126-354 (398)
36 KOG1126 DNA-binding cell divis 99.2 1.5E-09 3.3E-14 83.5 15.1 191 11-205 420-616 (638)
37 PF12854 PPR_1: PPR repeat 99.2 5.2E-11 1.1E-15 57.1 4.0 32 175-206 2-33 (34)
38 PRK10049 pgaA outer membrane p 99.2 3.1E-08 6.8E-13 81.3 22.3 184 20-206 245-453 (765)
39 PF12854 PPR_1: PPR repeat 99.2 5.5E-11 1.2E-15 57.0 3.8 33 34-66 1-33 (34)
40 TIGR03302 OM_YfiO outer membra 99.2 2.3E-08 5.1E-13 70.7 18.7 168 37-206 30-229 (235)
41 KOG1155 Anaphase-promoting com 99.2 1.7E-08 3.7E-13 75.1 18.1 161 41-205 331-491 (559)
42 KOG1126 DNA-binding cell divis 99.2 5E-09 1.1E-13 80.8 15.9 166 37-206 418-583 (638)
43 KOG1129 TPR repeat-containing 99.1 8.5E-09 1.8E-13 73.7 14.4 160 41-205 224-383 (478)
44 COG3071 HemY Uncharacterized e 99.1 1.8E-07 4E-12 68.4 21.4 167 37-206 150-387 (400)
45 KOG1129 TPR repeat-containing 99.1 4.4E-09 9.6E-14 75.1 12.9 155 16-174 227-387 (478)
46 PRK11189 lipoprotein NlpI; Pro 99.1 6E-08 1.3E-12 70.9 19.1 186 13-206 65-262 (296)
47 COG3063 PilF Tfp pilus assembl 99.1 1.9E-07 4.2E-12 63.7 19.7 186 14-202 37-229 (250)
48 COG3063 PilF Tfp pilus assembl 99.1 1.2E-07 2.5E-12 64.7 18.2 162 41-205 36-198 (250)
49 PRK14574 hmsH outer membrane p 99.1 1.6E-07 3.4E-12 77.0 22.2 188 17-206 297-510 (822)
50 TIGR00540 hemY_coli hemY prote 99.0 1.1E-07 2.3E-12 72.8 18.9 178 25-206 97-289 (409)
51 KOG1155 Anaphase-promoting com 99.0 1.8E-07 3.9E-12 69.9 18.3 190 13-205 331-532 (559)
52 KOG4318 Bicoid mRNA stability 99.0 9.8E-09 2.1E-13 81.7 11.9 167 33-203 18-259 (1088)
53 PRK14574 hmsH outer membrane p 99.0 3.5E-07 7.6E-12 75.0 20.4 179 21-205 43-228 (822)
54 PF04733 Coatomer_E: Coatomer 99.0 1.6E-07 3.4E-12 68.2 16.5 148 20-174 110-265 (290)
55 PRK10049 pgaA outer membrane p 99.0 4.9E-07 1.1E-11 74.5 21.2 152 15-170 18-175 (765)
56 KOG1840 Kinesin light chain [C 99.0 2.1E-07 4.6E-12 71.8 17.6 191 16-206 245-476 (508)
57 PF04733 Coatomer_E: Coatomer 98.9 9.5E-08 2.1E-12 69.3 13.5 147 48-205 110-261 (290)
58 PRK10370 formate-dependent nit 98.9 1.4E-06 3E-11 59.9 18.3 158 19-189 23-186 (198)
59 COG5010 TadD Flp pilus assembl 98.9 3.4E-06 7.3E-11 58.7 19.9 157 44-204 70-226 (257)
60 PRK10370 formate-dependent nit 98.9 4.8E-07 1E-11 62.1 15.7 147 46-207 22-171 (198)
61 PF10037 MRP-S27: Mitochondria 98.9 9.9E-08 2.2E-12 72.0 13.2 126 33-158 59-186 (429)
62 PF12569 NARP1: NMDA receptor- 98.9 4.2E-06 9.1E-11 65.3 21.9 51 20-70 12-68 (517)
63 KOG1840 Kinesin light chain [C 98.8 9.8E-07 2.1E-11 68.2 17.9 194 13-206 200-435 (508)
64 cd05804 StaR_like StaR_like; a 98.8 4.4E-06 9.6E-11 62.7 21.0 156 47-206 50-212 (355)
65 KOG0547 Translocase of outer m 98.8 1.2E-06 2.7E-11 66.0 16.5 188 15-206 363-563 (606)
66 COG2956 Predicted N-acetylgluc 98.8 4.3E-06 9.3E-11 60.1 18.4 156 18-174 113-278 (389)
67 PRK15359 type III secretion sy 98.8 1E-06 2.2E-11 57.4 14.4 91 81-173 30-120 (144)
68 TIGR00756 PPR pentatricopeptid 98.8 1.3E-08 2.7E-13 49.2 4.0 33 42-74 2-34 (35)
69 PRK11189 lipoprotein NlpI; Pro 98.8 7.2E-06 1.6E-10 60.1 19.9 131 40-174 64-194 (296)
70 TIGR00756 PPR pentatricopeptid 98.8 1.7E-08 3.6E-13 48.8 4.3 33 147-179 2-34 (35)
71 PRK15179 Vi polysaccharide bio 98.8 5E-06 1.1E-10 67.2 20.3 149 33-185 79-227 (694)
72 KOG2003 TPR repeat-containing 98.8 2.8E-06 6.1E-11 63.8 17.2 168 23-195 535-709 (840)
73 PRK15179 Vi polysaccharide bio 98.8 2.8E-06 6E-11 68.7 18.5 133 71-206 82-214 (694)
74 PF13812 PPR_3: Pentatricopept 98.7 2.1E-08 4.6E-13 48.1 4.1 33 41-73 2-34 (34)
75 PRK15359 type III secretion sy 98.7 1.4E-06 3E-11 56.8 13.6 106 33-140 17-122 (144)
76 PF13812 PPR_3: Pentatricopept 98.7 3.4E-08 7.3E-13 47.4 4.4 33 146-178 2-34 (34)
77 PF10037 MRP-S27: Mitochondria 98.7 5.5E-07 1.2E-11 68.1 12.7 125 69-193 60-186 (429)
78 TIGR03302 OM_YfiO outer membra 98.7 6.9E-06 1.5E-10 58.1 17.9 162 11-174 32-232 (235)
79 COG5010 TadD Flp pilus assembl 98.7 3E-06 6.6E-11 58.9 15.1 135 36-173 96-230 (257)
80 KOG2002 TPR-containing nuclear 98.7 7.1E-07 1.5E-11 72.1 13.6 170 34-205 558-741 (1018)
81 TIGR02552 LcrH_SycD type III s 98.7 3.3E-06 7.1E-11 54.3 14.3 96 77-174 19-114 (135)
82 PF09976 TPR_21: Tetratricopep 98.7 3.5E-06 7.5E-11 55.0 14.4 128 77-207 14-145 (145)
83 PF08579 RPM2: Mitochondrial r 98.7 7.5E-07 1.6E-11 54.0 9.9 78 115-192 30-116 (120)
84 KOG2003 TPR repeat-containing 98.7 6.8E-06 1.5E-10 61.8 16.7 151 50-205 534-685 (840)
85 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.2E-06 7E-11 63.6 15.2 123 43-171 172-294 (395)
86 KOG1128 Uncharacterized conser 98.6 1.3E-06 2.8E-11 68.7 13.2 181 16-206 428-613 (777)
87 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.6E-06 1E-10 62.8 15.7 121 78-205 172-293 (395)
88 COG3071 HemY Uncharacterized e 98.6 3.9E-05 8.4E-10 56.6 19.1 180 25-206 97-289 (400)
89 KOG1070 rRNA processing protei 98.6 1.1E-05 2.4E-10 67.9 18.0 192 11-206 1457-1660(1710)
90 KOG3081 Vesicle coat complex C 98.6 4.6E-05 9.9E-10 53.5 18.3 153 33-196 101-257 (299)
91 TIGR02552 LcrH_SycD type III s 98.6 8.3E-06 1.8E-10 52.4 13.7 107 39-149 16-122 (135)
92 PF08579 RPM2: Mitochondrial r 98.6 2.1E-06 4.5E-11 52.1 9.4 76 81-156 31-115 (120)
93 KOG2076 RNA polymerase III tra 98.5 2.5E-05 5.3E-10 63.0 17.7 157 49-206 386-552 (895)
94 PF12569 NARP1: NMDA receptor- 98.5 3.9E-05 8.5E-10 60.1 18.3 162 42-205 145-330 (517)
95 PF01535 PPR: PPR repeat; Int 98.5 1.5E-07 3.2E-12 44.0 3.3 30 42-71 2-31 (31)
96 PF09976 TPR_21: Tetratricopep 98.5 2.7E-05 5.9E-10 50.8 15.0 128 40-171 12-144 (145)
97 COG4783 Putative Zn-dependent 98.5 0.0001 2.2E-09 55.9 19.3 118 84-205 315-433 (484)
98 KOG3060 Uncharacterized conser 98.5 5.3E-05 1.1E-09 52.8 16.3 170 33-206 43-217 (289)
99 cd05804 StaR_like StaR_like; a 98.5 0.00018 4E-09 54.0 20.9 164 42-206 116-290 (355)
100 KOG0547 Translocase of outer m 98.5 1.8E-05 3.9E-10 60.0 14.5 154 50-207 336-489 (606)
101 KOG2076 RNA polymerase III tra 98.5 0.00018 3.8E-09 58.4 20.7 197 8-206 135-342 (895)
102 PF05843 Suf: Suppressor of fo 98.5 2.2E-05 4.7E-10 57.0 14.8 141 41-187 2-147 (280)
103 KOG1173 Anaphase-promoting com 98.5 6.7E-05 1.5E-09 57.8 17.6 194 10-206 276-515 (611)
104 PF01535 PPR: PPR repeat; Int 98.5 3.1E-07 6.7E-12 42.9 3.5 29 147-175 2-30 (31)
105 KOG3081 Vesicle coat complex C 98.4 2.5E-05 5.5E-10 54.7 13.8 155 13-174 109-271 (299)
106 KOG0495 HAT repeat protein [RN 98.4 0.00028 6E-09 55.7 20.6 161 39-204 549-709 (913)
107 KOG1173 Anaphase-promoting com 98.4 7.6E-05 1.6E-09 57.5 17.2 141 49-193 389-535 (611)
108 PF06239 ECSIT: Evolutionarily 98.4 1.1E-05 2.4E-10 55.0 11.1 91 35-125 42-153 (228)
109 PF06239 ECSIT: Evolutionarily 98.4 2E-05 4.3E-10 53.8 12.2 102 72-173 44-167 (228)
110 KOG1070 rRNA processing protei 98.4 0.00012 2.7E-09 62.0 18.7 181 16-198 1504-1689(1710)
111 KOG1174 Anaphase-promoting com 98.4 0.00016 3.5E-09 54.0 17.1 197 3-204 185-392 (564)
112 KOG2002 TPR-containing nuclear 98.3 0.00029 6.3E-09 57.7 19.4 191 11-206 269-478 (1018)
113 cd00189 TPR Tetratricopeptide 98.3 2.5E-05 5.4E-10 46.1 11.0 92 44-137 4-95 (100)
114 PF12895 Apc3: Anaphase-promot 98.3 1.8E-06 3.8E-11 50.8 5.6 81 123-205 2-83 (84)
115 cd00189 TPR Tetratricopeptide 98.3 1.8E-05 3.8E-10 46.8 10.2 93 79-173 4-96 (100)
116 PLN02789 farnesyltranstransfer 98.3 0.00034 7.4E-09 51.7 18.6 148 42-193 39-189 (320)
117 KOG0495 HAT repeat protein [RN 98.3 0.00041 9E-09 54.8 19.1 131 39-172 617-780 (913)
118 KOG1125 TPR repeat-containing 98.3 0.00014 3E-09 56.3 16.2 111 93-206 412-524 (579)
119 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.4E-05 7.5E-10 48.2 11.3 99 76-174 3-105 (119)
120 PRK14720 transcript cleavage f 98.3 0.00016 3.4E-09 59.9 16.9 126 77-206 118-249 (906)
121 PRK14720 transcript cleavage f 98.3 0.00011 2.4E-09 60.7 15.8 142 27-174 17-178 (906)
122 TIGR02795 tol_pal_ybgF tol-pal 98.3 0.00013 2.9E-09 45.5 13.2 101 41-141 3-107 (119)
123 PRK15363 pathogenicity island 98.3 0.00019 4.1E-09 46.8 13.7 94 79-174 39-132 (157)
124 KOG1915 Cell cycle control pro 98.2 0.00015 3.2E-09 55.1 14.7 161 39-204 106-268 (677)
125 PF12895 Apc3: Anaphase-promot 98.2 6.4E-06 1.4E-10 48.4 6.3 79 89-169 3-82 (84)
126 PLN02789 farnesyltranstransfer 98.2 0.00095 2.1E-08 49.4 19.9 188 14-205 39-246 (320)
127 KOG4340 Uncharacterized conser 98.2 0.00019 4.1E-09 51.5 14.2 195 3-205 1-203 (459)
128 COG4783 Putative Zn-dependent 98.2 0.00046 9.9E-09 52.5 16.5 121 50-174 316-437 (484)
129 PF05843 Suf: Suppressor of fo 98.2 0.00014 3E-09 52.9 13.4 128 76-206 2-133 (280)
130 PRK15363 pathogenicity island 98.2 0.00014 3.1E-09 47.4 11.9 96 109-206 34-129 (157)
131 PRK02603 photosystem I assembl 98.2 0.00061 1.3E-08 45.8 15.5 114 77-195 37-166 (172)
132 KOG1174 Anaphase-promoting com 98.2 0.00075 1.6E-08 50.6 16.6 158 43-206 337-497 (564)
133 PLN03088 SGT1, suppressor of 98.1 0.00016 3.5E-09 54.4 13.6 92 47-140 9-100 (356)
134 CHL00033 ycf3 photosystem I as 98.1 0.0002 4.4E-09 47.9 12.8 96 75-171 35-139 (168)
135 KOG3060 Uncharacterized conser 98.1 0.0011 2.3E-08 46.5 18.1 164 8-174 47-220 (289)
136 PRK02603 photosystem I assembl 98.1 0.00043 9.2E-09 46.6 14.0 86 39-125 34-121 (172)
137 PLN03088 SGT1, suppressor of 98.1 0.0002 4.4E-09 53.9 13.1 90 83-174 10-99 (356)
138 KOG1915 Cell cycle control pro 98.1 0.0017 3.6E-08 49.7 17.2 148 52-205 85-232 (677)
139 PRK10866 outer membrane biogen 98.0 0.0018 4E-08 46.1 18.8 163 39-204 31-236 (243)
140 PRK10153 DNA-binding transcrip 98.0 0.0013 2.8E-08 52.0 17.2 146 33-184 330-490 (517)
141 KOG2376 Signal recognition par 98.0 0.00096 2.1E-08 52.0 15.3 170 19-206 19-201 (652)
142 KOG1128 Uncharacterized conser 98.0 0.00033 7.1E-09 55.8 12.9 182 8-192 453-635 (777)
143 PF14559 TPR_19: Tetratricopep 98.0 4.9E-05 1.1E-09 42.5 6.3 52 122-174 3-54 (68)
144 KOG1914 mRNA cleavage and poly 97.9 0.0048 1E-07 48.0 17.6 147 56-206 347-498 (656)
145 PF14938 SNAP: Soluble NSF att 97.9 0.0018 3.8E-08 47.3 14.9 162 41-205 36-221 (282)
146 CHL00033 ycf3 photosystem I as 97.9 0.00093 2E-08 44.7 12.4 112 93-205 17-138 (168)
147 PRK10153 DNA-binding transcrip 97.9 0.0031 6.7E-08 49.9 16.3 134 70-206 332-479 (517)
148 PF12921 ATP13: Mitochondrial 97.9 0.0011 2.4E-08 41.9 11.4 50 141-190 48-98 (126)
149 PF13432 TPR_16: Tetratricopep 97.8 0.00022 4.8E-09 39.4 7.3 56 118-174 5-60 (65)
150 KOG4340 Uncharacterized conser 97.8 0.00061 1.3E-08 49.0 10.8 164 39-205 143-335 (459)
151 KOG2796 Uncharacterized conser 97.8 0.0044 9.5E-08 44.0 14.7 133 41-174 178-315 (366)
152 PF14559 TPR_19: Tetratricopep 97.8 0.00013 2.8E-09 40.7 6.1 52 87-139 3-54 (68)
153 KOG1125 TPR repeat-containing 97.8 0.0046 9.9E-08 48.2 15.8 164 40-207 319-491 (579)
154 PRK04841 transcriptional regul 97.8 0.011 2.4E-07 50.2 19.5 193 14-206 533-757 (903)
155 KOG3617 WD40 and TPR repeat-co 97.8 0.0035 7.6E-08 51.3 15.0 183 10-205 755-992 (1416)
156 PRK04841 transcriptional regul 97.8 0.01 2.2E-07 50.5 19.0 193 14-206 493-717 (903)
157 PF03704 BTAD: Bacterial trans 97.7 0.00044 9.6E-09 45.1 8.7 73 111-184 63-140 (146)
158 KOG0985 Vesicle coat protein c 97.7 0.0038 8.3E-08 52.1 15.3 78 14-93 1106-1184(1666)
159 PF12688 TPR_5: Tetratrico pep 97.7 0.0028 6.2E-08 39.7 11.7 105 81-191 7-117 (120)
160 PRK10803 tol-pal system protei 97.7 0.0012 2.7E-08 47.4 11.3 96 111-206 144-243 (263)
161 PF14938 SNAP: Soluble NSF att 97.7 0.0091 2E-07 43.6 17.6 189 13-203 36-260 (282)
162 PF12921 ATP13: Mitochondrial 97.7 0.00073 1.6E-08 42.8 8.7 51 71-121 48-99 (126)
163 PF13414 TPR_11: TPR repeat; P 97.7 0.00062 1.3E-08 38.1 7.6 61 111-172 4-65 (69)
164 PF04840 Vps16_C: Vps16, C-ter 97.7 0.012 2.6E-07 43.6 16.9 107 76-202 178-284 (319)
165 KOG3616 Selective LIM binding 97.7 0.0012 2.6E-08 53.3 11.2 106 84-202 741-846 (1636)
166 KOG0553 TPR repeat-containing 97.7 0.00064 1.4E-08 48.7 8.8 103 84-190 90-192 (304)
167 KOG3616 Selective LIM binding 97.7 0.00099 2.2E-08 53.7 10.7 110 46-168 738-847 (1636)
168 KOG1156 N-terminal acetyltrans 97.6 0.014 3.1E-07 46.3 16.6 116 22-139 51-172 (700)
169 PF13414 TPR_11: TPR repeat; P 97.6 0.00043 9.3E-09 38.7 6.6 62 144-206 2-64 (69)
170 PF13432 TPR_16: Tetratricopep 97.6 0.00061 1.3E-08 37.6 6.9 55 84-139 6-60 (65)
171 PF03704 BTAD: Bacterial trans 97.6 0.00074 1.6E-08 44.0 8.1 71 77-148 64-139 (146)
172 KOG2047 mRNA splicing factor [ 97.6 0.018 3.9E-07 45.9 16.1 158 43-206 105-274 (835)
173 KOG3941 Intermediate in Toll s 97.6 0.0031 6.7E-08 45.2 11.0 105 34-138 61-187 (406)
174 PF13525 YfiO: Outer membrane 97.6 0.012 2.6E-07 40.7 14.8 154 45-200 10-198 (203)
175 KOG2047 mRNA splicing factor [ 97.5 0.022 4.8E-07 45.4 16.5 149 36-192 134-293 (835)
176 KOG3785 Uncharacterized conser 97.5 0.012 2.6E-07 43.7 13.9 181 18-204 291-485 (557)
177 PF13170 DUF4003: Protein of u 97.5 0.015 3.2E-07 42.7 14.5 131 56-188 78-225 (297)
178 PRK10803 tol-pal system protei 97.5 0.0067 1.4E-07 43.7 12.4 104 76-181 144-251 (263)
179 KOG0553 TPR repeat-containing 97.5 0.004 8.7E-08 44.8 10.9 100 49-152 90-189 (304)
180 KOG2053 Mitochondrial inherita 97.5 0.012 2.5E-07 48.4 14.6 134 51-191 20-155 (932)
181 PF13371 TPR_9: Tetratricopept 97.5 0.002 4.2E-08 36.4 7.9 56 118-174 3-58 (73)
182 COG4235 Cytochrome c biogenesi 97.4 0.023 4.9E-07 41.1 15.3 114 72-189 153-269 (287)
183 KOG0548 Molecular co-chaperone 97.4 0.022 4.9E-07 44.2 14.8 127 46-174 304-455 (539)
184 PRK15331 chaperone protein Sic 97.4 0.017 3.6E-07 38.2 12.4 89 84-174 46-134 (165)
185 KOG4162 Predicted calmodulin-b 97.4 0.054 1.2E-06 44.1 17.3 199 7-206 318-539 (799)
186 PF13281 DUF4071: Domain of un 97.4 0.037 7.9E-07 41.8 16.5 166 39-206 140-331 (374)
187 PF13424 TPR_12: Tetratricopep 97.4 0.00064 1.4E-08 39.1 5.0 59 147-205 7-71 (78)
188 PF04840 Vps16_C: Vps16, C-ter 97.3 0.034 7.3E-07 41.3 14.8 113 39-171 176-288 (319)
189 PF12688 TPR_5: Tetratrico pep 97.3 0.015 3.2E-07 36.5 13.7 107 46-156 7-117 (120)
190 COG4235 Cytochrome c biogenesi 97.3 0.018 4E-07 41.5 12.7 113 37-153 153-268 (287)
191 KOG3941 Intermediate in Toll s 97.3 0.0041 8.9E-08 44.6 9.1 102 72-173 64-187 (406)
192 PRK15331 chaperone protein Sic 97.3 0.014 3E-07 38.5 10.8 93 45-139 42-134 (165)
193 KOG2796 Uncharacterized conser 97.3 0.036 7.8E-07 39.5 13.7 129 77-206 179-312 (366)
194 KOG1127 TPR repeat-containing 97.3 0.038 8.3E-07 46.3 15.2 187 14-205 494-696 (1238)
195 KOG0985 Vesicle coat protein c 97.2 0.036 7.7E-07 46.8 14.5 146 39-199 1103-1268(1666)
196 KOG4162 Predicted calmodulin-b 97.2 0.036 7.8E-07 45.0 14.3 124 78-204 653-778 (799)
197 PF13371 TPR_9: Tetratricopept 97.2 0.0046 1E-07 34.9 7.2 55 84-139 4-58 (73)
198 KOG1156 N-terminal acetyltrans 97.2 0.029 6.2E-07 44.7 13.2 151 37-190 38-189 (700)
199 PF13424 TPR_12: Tetratricopep 97.1 0.0028 6.1E-08 36.4 6.0 62 111-172 6-73 (78)
200 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.084 1.8E-06 40.6 14.4 145 40-190 397-545 (660)
201 KOG1127 TPR repeat-containing 97.1 0.025 5.5E-07 47.3 12.5 160 41-205 493-655 (1238)
202 KOG3785 Uncharacterized conser 97.1 0.031 6.6E-07 41.6 11.8 132 43-181 362-495 (557)
203 KOG1914 mRNA cleavage and poly 97.1 0.1 2.2E-06 41.0 16.6 131 41-174 367-501 (656)
204 KOG3617 WD40 and TPR repeat-co 97.0 0.029 6.4E-07 46.2 12.5 173 20-205 736-937 (1416)
205 COG4700 Uncharacterized protei 97.0 0.054 1.2E-06 36.6 17.9 126 72-199 86-212 (251)
206 KOG2053 Mitochondrial inherita 96.9 0.19 4.2E-06 41.8 19.9 185 15-202 44-248 (932)
207 smart00299 CLH Clathrin heavy 96.8 0.058 1.3E-06 34.8 13.4 128 42-192 9-137 (140)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.063 1.4E-06 41.4 12.3 98 73-176 73-176 (453)
209 KOG0624 dsRNA-activated protei 96.8 0.12 2.7E-06 38.4 15.4 91 46-138 161-251 (504)
210 KOG0548 Molecular co-chaperone 96.8 0.16 3.4E-06 39.8 14.2 84 120-205 368-451 (539)
211 COG4700 Uncharacterized protei 96.8 0.085 1.8E-06 35.7 15.8 136 33-170 82-218 (251)
212 PF10300 DUF3808: Protein of u 96.7 0.23 4.9E-06 39.2 15.0 159 45-206 193-373 (468)
213 COG4105 ComL DNA uptake lipopr 96.6 0.14 3E-06 36.4 18.7 163 38-202 33-226 (254)
214 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.078 1.7E-06 40.9 11.5 122 38-166 73-200 (453)
215 KOG2376 Signal recognition par 96.6 0.26 5.6E-06 39.2 17.1 159 41-203 340-514 (652)
216 KOG0543 FKBP-type peptidyl-pro 96.6 0.11 2.3E-06 39.3 11.9 125 48-174 216-355 (397)
217 KOG1538 Uncharacterized conser 96.5 0.094 2E-06 42.2 11.6 71 7-77 551-637 (1081)
218 COG3629 DnrI DNA-binding trans 96.5 0.077 1.7E-06 38.4 10.3 78 111-189 154-236 (280)
219 PF13512 TPR_18: Tetratricopep 96.5 0.11 2.4E-06 33.5 10.0 71 51-121 21-93 (142)
220 KOG0543 FKBP-type peptidyl-pro 96.5 0.17 3.8E-06 38.2 12.2 121 83-206 216-352 (397)
221 KOG2114 Vacuolar assembly/sort 96.5 0.42 9.1E-06 39.7 15.1 175 14-206 336-516 (933)
222 PF07035 Mic1: Colon cancer-as 96.4 0.15 3.2E-06 34.0 14.7 129 33-175 22-150 (167)
223 COG3898 Uncharacterized membra 96.4 0.3 6.4E-06 37.1 16.2 138 35-174 113-292 (531)
224 COG1729 Uncharacterized protei 96.3 0.12 2.6E-06 37.0 10.1 94 112-206 144-241 (262)
225 smart00299 CLH Clathrin heavy 96.3 0.15 3.3E-06 32.8 12.5 87 78-172 10-96 (140)
226 KOG1941 Acetylcholine receptor 96.2 0.17 3.6E-06 38.0 10.9 194 13-207 44-273 (518)
227 KOG2610 Uncharacterized conser 96.2 0.34 7.3E-06 36.1 12.4 151 53-205 116-272 (491)
228 COG3629 DnrI DNA-binding trans 96.2 0.12 2.7E-06 37.4 10.0 81 75-156 153-238 (280)
229 PF04053 Coatomer_WDAD: Coatom 96.2 0.34 7.4E-06 37.9 12.9 132 40-204 295-426 (443)
230 KOG0550 Molecular chaperone (D 96.1 0.42 9.1E-06 36.5 12.3 150 49-207 178-348 (486)
231 KOG4570 Uncharacterized conser 96.1 0.1 2.2E-06 38.3 8.9 105 33-139 57-164 (418)
232 PRK10866 outer membrane biogen 96.0 0.34 7.4E-06 34.6 17.1 154 20-173 40-240 (243)
233 KOG1585 Protein required for f 96.0 0.34 7.4E-06 34.4 12.6 189 13-204 32-251 (308)
234 PF13176 TPR_7: Tetratricopept 96.0 0.011 2.4E-07 28.3 2.8 23 183-205 2-24 (36)
235 COG5107 RNA14 Pre-mRNA 3'-end 95.9 0.34 7.3E-06 37.5 11.5 123 76-202 398-524 (660)
236 PF04053 Coatomer_WDAD: Coatom 95.9 0.3 6.6E-06 38.2 11.7 133 13-171 296-428 (443)
237 PF04184 ST7: ST7 protein; In 95.9 0.54 1.2E-05 36.9 12.6 61 114-174 263-324 (539)
238 PF10300 DUF3808: Protein of u 95.9 0.65 1.4E-05 36.7 13.5 129 42-173 231-375 (468)
239 KOG2041 WD40 repeat protein [G 95.8 0.37 7.9E-06 39.5 11.8 52 144-204 851-902 (1189)
240 KOG4570 Uncharacterized conser 95.8 0.17 3.7E-06 37.2 9.1 127 46-174 25-164 (418)
241 PF13428 TPR_14: Tetratricopep 95.7 0.054 1.2E-06 27.2 4.9 28 42-69 3-30 (44)
242 PF13428 TPR_14: Tetratricopep 95.7 0.072 1.6E-06 26.7 5.3 27 148-174 4-30 (44)
243 PF13929 mRNA_stabil: mRNA sta 95.7 0.56 1.2E-05 34.2 12.4 136 56-191 144-289 (292)
244 COG1729 Uncharacterized protei 95.6 0.57 1.2E-05 33.7 11.0 97 77-174 144-244 (262)
245 PF10602 RPN7: 26S proteasome 95.4 0.48 1E-05 32.1 10.3 60 42-101 38-99 (177)
246 PF07035 Mic1: Colon cancer-as 95.4 0.46 1E-05 31.7 13.9 100 60-171 14-115 (167)
247 PF13512 TPR_18: Tetratricopep 95.4 0.42 9.1E-06 30.9 10.8 82 77-159 13-96 (142)
248 PF00637 Clathrin: Region in C 95.3 0.019 4.2E-07 37.2 2.8 54 46-99 13-66 (143)
249 PF13170 DUF4003: Protein of u 95.2 0.85 1.8E-05 33.7 15.5 139 33-173 90-249 (297)
250 KOG0624 dsRNA-activated protei 95.2 0.97 2.1E-05 33.9 18.8 180 21-204 47-247 (504)
251 KOG2280 Vacuolar assembly/sort 95.1 0.48 1E-05 38.9 10.4 114 70-202 679-792 (829)
252 PF02284 COX5A: Cytochrome c o 95.1 0.32 6.8E-06 29.4 7.2 47 93-139 28-74 (108)
253 PF13176 TPR_7: Tetratricopept 95.1 0.083 1.8E-06 25.1 4.1 26 147-172 1-26 (36)
254 COG3118 Thioredoxin domain-con 95.1 0.92 2E-05 33.1 12.8 148 49-200 143-292 (304)
255 PF10602 RPN7: 26S proteasome 94.9 0.73 1.6E-05 31.2 10.8 95 76-172 37-140 (177)
256 cd00923 Cyt_c_Oxidase_Va Cytoc 94.9 0.38 8.3E-06 28.7 7.1 47 91-137 23-69 (103)
257 PF00637 Clathrin: Region in C 94.7 0.018 4E-07 37.3 1.5 89 79-174 11-99 (143)
258 PF07079 DUF1347: Protein of u 94.6 1.7 3.6E-05 33.9 12.6 39 149-187 132-174 (549)
259 COG1747 Uncharacterized N-term 94.6 1.8 4E-05 34.3 16.3 163 35-204 61-229 (711)
260 KOG1920 IkappaB kinase complex 94.4 0.78 1.7E-05 39.7 10.3 83 79-173 943-1027(1265)
261 KOG4555 TPR repeat-containing 94.3 0.83 1.8E-05 29.2 9.5 91 49-140 52-145 (175)
262 PF13525 YfiO: Outer membrane 94.2 1.2 2.7E-05 30.8 13.4 124 81-206 11-167 (203)
263 COG0457 NrfG FOG: TPR repeat [ 94.2 1.2 2.5E-05 30.4 19.2 164 38-204 93-260 (291)
264 PF09205 DUF1955: Domain of un 94.2 0.91 2E-05 29.1 12.5 61 144-205 85-145 (161)
265 PF13431 TPR_17: Tetratricopep 93.9 0.094 2E-06 24.7 2.7 20 145-164 13-32 (34)
266 PF04184 ST7: ST7 protein; In 93.9 2.6 5.7E-05 33.3 12.6 79 81-159 265-345 (539)
267 PF11207 DUF2989: Protein of u 93.8 1.5 3.2E-05 30.3 11.9 81 119-201 116-199 (203)
268 COG4455 ImpE Protein of avirul 93.6 1.1 2.4E-05 31.4 8.1 78 77-155 3-82 (273)
269 PF13374 TPR_10: Tetratricopep 93.4 0.32 6.8E-06 23.6 4.4 28 146-173 3-30 (42)
270 PF13374 TPR_10: Tetratricopep 93.4 0.3 6.4E-06 23.7 4.2 29 40-68 2-30 (42)
271 COG3118 Thioredoxin domain-con 93.2 2.5 5.4E-05 31.0 14.8 117 84-203 143-259 (304)
272 PF13281 DUF4071: Domain of un 93.1 3.1 6.7E-05 31.8 16.7 159 14-174 143-334 (374)
273 PF11207 DUF2989: Protein of u 92.5 2.5 5.4E-05 29.2 11.6 78 86-165 118-198 (203)
274 PF13929 mRNA_stabil: mRNA sta 92.3 3.4 7.3E-05 30.3 11.4 120 36-155 160-288 (292)
275 PF09613 HrpB1_HrpK: Bacterial 92.1 2.4 5.1E-05 28.1 12.2 53 50-104 20-73 (160)
276 PF02284 COX5A: Cytochrome c o 92.1 1.7 3.7E-05 26.4 9.5 79 111-190 9-89 (108)
277 COG0457 NrfG FOG: TPR repeat [ 91.9 2.8 6E-05 28.5 21.7 166 39-205 58-227 (291)
278 COG4649 Uncharacterized protei 91.9 2.8 6E-05 28.4 12.7 141 37-178 56-200 (221)
279 PF00515 TPR_1: Tetratricopept 91.8 0.7 1.5E-05 21.2 4.2 29 41-69 2-30 (34)
280 PF00515 TPR_1: Tetratricopept 91.7 0.7 1.5E-05 21.2 4.5 27 147-173 3-29 (34)
281 COG4455 ImpE Protein of avirul 91.7 2.8 6.1E-05 29.5 8.2 77 42-119 3-81 (273)
282 KOG1538 Uncharacterized conser 91.7 2.4 5.2E-05 34.7 8.9 58 115-174 778-846 (1081)
283 KOG4555 TPR repeat-containing 91.6 2.5 5.3E-05 27.2 9.9 91 84-175 52-145 (175)
284 PF13762 MNE1: Mitochondrial s 91.6 2.6 5.7E-05 27.5 11.7 81 113-193 42-128 (145)
285 PF08631 SPO22: Meiosis protei 91.6 4.2 9.1E-05 29.8 16.6 126 53-181 48-193 (278)
286 KOG2280 Vacuolar assembly/sort 91.2 1.7 3.6E-05 36.0 7.8 119 33-170 677-795 (829)
287 PF08631 SPO22: Meiosis protei 91.2 4.6 0.0001 29.6 18.3 161 41-204 85-270 (278)
288 PRK15180 Vi polysaccharide bio 91.1 5.1 0.00011 31.8 9.9 87 85-173 333-419 (831)
289 KOG2610 Uncharacterized conser 91.1 5.3 0.00012 30.1 10.9 136 35-171 132-273 (491)
290 PRK15180 Vi polysaccharide bio 91.1 4.4 9.5E-05 32.1 9.5 86 52-139 335-420 (831)
291 PF07721 TPR_4: Tetratricopept 91.0 0.52 1.1E-05 20.5 3.0 20 185-204 6-25 (26)
292 PF07163 Pex26: Pex26 protein; 90.6 5.2 0.00011 29.2 9.8 89 80-168 88-181 (309)
293 PHA02875 ankyrin repeat protei 90.5 3.3 7.2E-05 32.1 8.9 59 5-63 23-88 (413)
294 PF09613 HrpB1_HrpK: Bacterial 90.4 3.8 8.2E-05 27.2 11.4 117 76-199 8-128 (160)
295 KOG0276 Vesicle coat complex C 90.3 8.8 0.00019 31.4 11.7 131 15-171 617-747 (794)
296 PF13174 TPR_6: Tetratricopept 90.2 0.96 2.1E-05 20.4 3.8 24 151-174 6-29 (33)
297 PF07719 TPR_2: Tetratricopept 90.2 1 2.3E-05 20.5 4.2 28 42-69 3-30 (34)
298 PF07719 TPR_2: Tetratricopept 89.9 1.1 2.4E-05 20.4 4.5 26 148-173 4-29 (34)
299 KOG1130 Predicted G-alpha GTPa 89.8 1.4 3.1E-05 33.9 6.0 129 77-205 197-340 (639)
300 COG4105 ComL DNA uptake lipopr 89.6 6 0.00013 28.4 15.8 166 12-181 35-238 (254)
301 PF02259 FAT: FAT domain; Int 89.6 7.2 0.00016 29.3 15.5 184 18-205 4-209 (352)
302 PF07163 Pex26: Pex26 protein; 89.6 6.5 0.00014 28.8 9.8 91 43-133 86-181 (309)
303 PF07079 DUF1347: Protein of u 89.5 8.9 0.00019 30.2 18.8 119 84-206 388-521 (549)
304 PF13762 MNE1: Mitochondrial s 89.3 4.4 9.5E-05 26.4 11.8 96 67-162 29-132 (145)
305 TIGR03504 FimV_Cterm FimV C-te 89.3 1.2 2.5E-05 22.4 3.7 20 118-137 7-26 (44)
306 TIGR03504 FimV_Cterm FimV C-te 89.3 1.2 2.6E-05 22.4 3.8 26 150-175 4-29 (44)
307 PF10579 Rapsyn_N: Rapsyn N-te 89.1 2.4 5.1E-05 24.4 5.2 46 122-167 18-65 (80)
308 COG0735 Fur Fe2+/Zn2+ uptake r 88.9 4.3 9.3E-05 26.5 7.1 62 62-124 8-69 (145)
309 PF14689 SPOB_a: Sensor_kinase 88.8 1.3 2.8E-05 24.1 4.0 47 125-173 5-51 (62)
310 KOG2114 Vacuolar assembly/sort 88.7 14 0.0003 31.4 11.4 151 39-202 333-485 (933)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 3.9 8.4E-05 24.6 9.7 77 112-189 7-85 (103)
312 KOG4077 Cytochrome c oxidase, 88.3 4.8 0.0001 25.6 7.0 47 93-139 67-113 (149)
313 PF11663 Toxin_YhaV: Toxin wit 88.0 0.67 1.5E-05 29.6 2.8 29 54-84 109-137 (140)
314 PF11846 DUF3366: Domain of un 87.9 3.7 8.1E-05 28.1 6.8 53 122-174 120-173 (193)
315 PRK11906 transcriptional regul 87.7 12 0.00026 29.5 15.6 158 41-203 252-430 (458)
316 COG4649 Uncharacterized protei 87.4 7.1 0.00015 26.5 13.7 132 74-206 58-193 (221)
317 KOG0276 Vesicle coat complex C 87.3 15 0.00033 30.1 10.5 100 84-204 646-745 (794)
318 KOG1920 IkappaB kinase complex 87.3 18 0.00039 32.1 11.2 117 37-171 932-1052(1265)
319 PF11848 DUF3368: Domain of un 87.2 2.7 5.9E-05 21.5 4.9 33 156-188 13-45 (48)
320 PF13181 TPR_8: Tetratricopept 87.0 1.9 4.2E-05 19.6 4.4 27 147-173 3-29 (34)
321 COG3947 Response regulator con 87.0 4.6 9.9E-05 29.8 6.7 70 77-147 281-355 (361)
322 PRK11906 transcriptional regul 86.3 15 0.00032 29.0 11.6 113 55-170 319-432 (458)
323 TIGR02561 HrpB1_HrpK type III 86.1 7.5 0.00016 25.5 10.8 52 52-105 22-74 (153)
324 PF11848 DUF3368: Domain of un 86.1 3.2 6.9E-05 21.2 4.7 31 52-82 14-44 (48)
325 PF09205 DUF1955: Domain of un 85.6 7.5 0.00016 25.1 14.1 67 109-176 85-151 (161)
326 KOG1130 Predicted G-alpha GTPa 85.5 4 8.8E-05 31.6 6.1 123 14-136 197-341 (639)
327 PF14689 SPOB_a: Sensor_kinase 85.2 4.1 9E-05 22.2 4.7 26 113-138 26-51 (62)
328 cd08819 CARD_MDA5_2 Caspase ac 85.0 5.8 0.00013 23.3 6.8 64 129-198 21-84 (88)
329 PF10579 Rapsyn_N: Rapsyn N-te 85.0 5.4 0.00012 23.0 5.3 46 87-132 18-65 (80)
330 PRK11639 zinc uptake transcrip 84.9 9.5 0.00021 25.6 7.4 61 101-162 17-77 (169)
331 COG0735 Fur Fe2+/Zn2+ uptake r 84.4 9 0.0002 25.0 6.8 60 134-194 10-69 (145)
332 TIGR02508 type_III_yscG type I 84.3 7.1 0.00015 23.7 8.6 88 89-184 19-106 (115)
333 KOG4648 Uncharacterized conser 84.0 4.1 8.9E-05 30.8 5.5 48 84-132 106-153 (536)
334 PF11663 Toxin_YhaV: Toxin wit 83.7 1.4 3.1E-05 28.1 2.7 29 159-189 109-137 (140)
335 KOG0890 Protein kinase of the 83.6 26 0.00055 33.7 11.0 148 45-202 1388-1540(2382)
336 KOG2063 Vacuolar assembly/sort 82.7 19 0.00041 31.1 9.4 117 41-157 505-638 (877)
337 PRK10564 maltose regulon perip 82.5 3.8 8.3E-05 30.2 4.9 41 38-78 254-295 (303)
338 KOG4077 Cytochrome c oxidase, 82.5 10 0.00022 24.2 7.6 86 101-188 39-126 (149)
339 KOG4648 Uncharacterized conser 82.2 20 0.00043 27.3 9.0 90 48-139 105-194 (536)
340 PF11817 Foie-gras_1: Foie gra 82.1 12 0.00026 26.9 7.3 60 147-206 180-244 (247)
341 PF11846 DUF3366: Domain of un 82.1 14 0.0003 25.3 7.8 33 107-139 141-173 (193)
342 PRK09462 fur ferric uptake reg 82.1 12 0.00025 24.5 7.0 60 101-161 8-68 (148)
343 KOG2063 Vacuolar assembly/sort 81.9 24 0.00051 30.6 9.7 116 77-192 506-638 (877)
344 PF09454 Vps23_core: Vps23 cor 81.5 6.2 0.00014 21.8 4.4 52 143-195 6-57 (65)
345 KOG4567 GTPase-activating prot 81.4 17 0.00037 27.1 7.7 70 130-204 263-342 (370)
346 COG5159 RPN6 26S proteasome re 81.4 19 0.00042 26.6 11.3 127 46-172 9-152 (421)
347 COG3947 Response regulator con 81.4 20 0.00043 26.7 9.9 56 148-204 282-337 (361)
348 PRK10564 maltose regulon perip 80.9 4.5 9.8E-05 29.8 4.7 36 113-148 260-295 (303)
349 TIGR02561 HrpB1_HrpK type III 80.6 14 0.0003 24.4 10.2 63 76-140 8-74 (153)
350 PF12926 MOZART2: Mitotic-spin 80.2 9.6 0.00021 22.4 7.2 42 61-102 29-70 (88)
351 PF09454 Vps23_core: Vps23 cor 80.1 8 0.00017 21.3 4.7 44 76-120 9-52 (65)
352 COG1747 Uncharacterized N-term 79.9 30 0.00066 28.0 13.6 99 71-174 62-160 (711)
353 cd00280 TRFH Telomeric Repeat 79.6 17 0.00037 24.9 7.0 20 119-138 120-139 (200)
354 smart00028 TPR Tetratricopepti 79.0 4 8.6E-05 17.3 3.2 27 42-68 3-29 (34)
355 COG2976 Uncharacterized protei 78.7 19 0.00042 24.9 12.5 129 40-175 54-189 (207)
356 COG3898 Uncharacterized membra 78.1 30 0.00066 26.9 18.6 29 40-68 188-216 (531)
357 PF01475 FUR: Ferric uptake re 77.6 8.3 0.00018 24.1 4.8 44 81-124 13-56 (120)
358 KOG1550 Extracellular protein 77.5 38 0.00083 27.7 14.8 119 50-175 259-394 (552)
359 PHA02875 ankyrin repeat protei 76.9 33 0.00071 26.6 9.6 75 21-99 8-89 (413)
360 KOG4234 TPR repeat-containing 76.7 23 0.0005 24.8 9.2 88 86-174 106-197 (271)
361 PF10366 Vps39_1: Vacuolar sor 76.6 15 0.00033 22.6 7.0 26 78-103 42-67 (108)
362 KOG4234 TPR repeat-containing 76.5 24 0.00051 24.8 8.6 87 118-206 103-194 (271)
363 cd00280 TRFH Telomeric Repeat 75.9 23 0.00049 24.3 7.7 64 126-192 85-155 (200)
364 COG5108 RPO41 Mitochondrial DN 75.9 35 0.00075 28.7 8.6 90 45-137 33-130 (1117)
365 cd07153 Fur_like Ferric uptake 75.5 11 0.00024 23.2 5.0 35 90-124 15-49 (116)
366 PRK11639 zinc uptake transcrip 75.4 22 0.00047 23.9 7.2 60 66-126 17-76 (169)
367 cd08819 CARD_MDA5_2 Caspase ac 75.3 14 0.00031 21.7 7.7 64 95-164 22-85 (88)
368 KOG1586 Protein required for f 75.2 28 0.00061 25.0 10.0 22 156-177 165-186 (288)
369 PF09477 Type_III_YscG: Bacter 74.7 17 0.00038 22.4 9.0 82 87-175 18-99 (116)
370 PF09670 Cas_Cas02710: CRISPR- 74.7 38 0.00081 26.3 10.5 57 47-104 138-198 (379)
371 KOG1464 COP9 signalosome, subu 74.6 32 0.00068 25.4 12.3 173 33-205 19-216 (440)
372 PF04762 IKI3: IKI3 family; I 74.3 62 0.0013 28.6 11.4 119 18-139 700-843 (928)
373 KOG1464 COP9 signalosome, subu 73.7 34 0.00073 25.3 10.1 137 69-205 20-170 (440)
374 PF12862 Apc5: Anaphase-promot 73.5 16 0.00036 21.6 5.5 70 120-189 8-86 (94)
375 cd07153 Fur_like Ferric uptake 73.4 12 0.00026 23.1 4.7 47 116-162 6-52 (116)
376 KOG1585 Protein required for f 73.2 33 0.00071 24.9 12.8 29 40-68 31-59 (308)
377 PF10475 DUF2450: Protein of u 73.0 36 0.00077 25.2 10.4 107 83-200 106-217 (291)
378 KOG0686 COP9 signalosome, subu 72.6 44 0.00096 26.1 13.6 168 13-188 151-352 (466)
379 PF11838 ERAP1_C: ERAP1-like C 71.1 40 0.00087 25.0 13.3 143 56-203 146-302 (324)
380 KOG0550 Molecular chaperone (D 71.0 49 0.0011 26.0 12.7 89 50-139 259-350 (486)
381 PF07575 Nucleopor_Nup85: Nup8 70.9 27 0.00058 28.7 7.2 63 74-138 404-466 (566)
382 KOG4507 Uncharacterized conser 70.7 53 0.0011 27.2 8.4 103 52-156 619-721 (886)
383 KOG4567 GTPase-activating prot 70.7 43 0.00092 25.2 7.6 58 95-157 263-320 (370)
384 PRK09462 fur ferric uptake reg 70.4 27 0.00058 22.8 7.1 60 66-126 8-68 (148)
385 PF02259 FAT: FAT domain; Int 70.1 44 0.00095 25.1 16.5 66 108-173 144-212 (352)
386 PF01475 FUR: Ferric uptake re 69.7 13 0.00028 23.2 4.3 49 43-91 10-58 (120)
387 COG5108 RPO41 Mitochondrial DN 69.6 49 0.0011 27.9 8.1 91 80-173 33-131 (1117)
388 COG5159 RPN6 26S proteasome re 68.9 46 0.00099 24.8 9.9 125 81-205 9-150 (421)
389 TIGR02508 type_III_yscG type I 68.8 24 0.00052 21.6 6.7 71 125-202 20-90 (115)
390 KOG1586 Protein required for f 68.4 42 0.00091 24.2 12.7 108 33-141 66-185 (288)
391 PRK09857 putative transposase; 68.0 47 0.001 24.7 9.0 67 112-179 208-274 (292)
392 PF10366 Vps39_1: Vacuolar sor 68.0 26 0.00056 21.6 7.6 27 147-173 41-67 (108)
393 PF02841 GBP_C: Guanylate-bind 67.7 46 0.001 24.7 7.4 85 7-100 2-87 (297)
394 PF09868 DUF2095: Uncharacteri 66.9 28 0.00061 21.7 5.4 22 84-105 70-91 (128)
395 KOG4507 Uncharacterized conser 66.9 33 0.00072 28.3 6.6 53 121-174 653-705 (886)
396 COG2976 Uncharacterized protei 66.8 41 0.00088 23.4 14.4 124 76-206 55-185 (207)
397 PF11817 Foie-gras_1: Foie gra 66.1 47 0.001 23.9 8.1 62 111-172 179-245 (247)
398 PRK09857 putative transposase; 66.1 52 0.0011 24.5 8.4 66 78-144 209-274 (292)
399 PF03745 DUF309: Domain of unk 65.6 20 0.00044 19.5 5.6 14 123-136 12-25 (62)
400 KOG1941 Acetylcholine receptor 64.9 64 0.0014 25.0 11.3 158 14-172 85-273 (518)
401 KOG2908 26S proteasome regulat 64.8 61 0.0013 24.7 9.6 21 153-173 123-143 (380)
402 PF02847 MA3: MA3 domain; Int 64.3 30 0.00066 21.1 8.0 23 44-66 6-28 (113)
403 KOG2297 Predicted translation 63.2 63 0.0014 24.4 10.3 21 144-164 320-340 (412)
404 KOG2297 Predicted translation 63.0 63 0.0014 24.4 11.0 70 121-200 266-341 (412)
405 cd08326 CARD_CASP9 Caspase act 62.9 28 0.00062 20.3 6.5 31 90-124 45-75 (84)
406 KOG2908 26S proteasome regulat 62.8 67 0.0014 24.5 9.8 78 78-155 78-166 (380)
407 KOG1258 mRNA processing protei 61.6 91 0.002 25.7 17.9 179 9-194 294-489 (577)
408 PF14669 Asp_Glu_race_2: Putat 61.5 52 0.0011 22.9 14.4 164 6-169 2-205 (233)
409 PF11838 ERAP1_C: ERAP1-like C 61.0 66 0.0014 23.9 20.1 110 91-204 146-261 (324)
410 KOG1839 Uncharacterized protei 60.4 1.4E+02 0.003 27.3 11.6 155 50-204 942-1123(1236)
411 PF07575 Nucleopor_Nup85: Nup8 60.1 45 0.00098 27.4 6.6 78 95-174 390-467 (566)
412 COG4785 NlpI Lipoprotein NlpI, 59.9 61 0.0013 23.2 15.7 162 34-205 92-262 (297)
413 PF12862 Apc5: Anaphase-promot 59.7 34 0.00074 20.2 6.6 55 85-139 8-70 (94)
414 PF02607 B12-binding_2: B12 bi 59.5 27 0.00058 19.7 4.0 38 52-89 13-50 (79)
415 PF07378 FlbT: Flagellar prote 58.9 45 0.00097 21.3 5.3 66 107-172 49-118 (126)
416 COG0819 TenA Putative transcri 58.9 38 0.00083 23.9 5.3 99 29-127 98-207 (218)
417 PF08542 Rep_fac_C: Replicatio 57.6 36 0.00077 19.7 6.1 32 42-74 7-38 (89)
418 PF04097 Nic96: Nup93/Nic96; 56.9 1.2E+02 0.0025 25.5 8.6 152 47-204 265-438 (613)
419 PF10345 Cohesin_load: Cohesin 56.8 1.2E+02 0.0025 25.4 12.6 127 45-172 105-252 (608)
420 PF02847 MA3: MA3 domain; Int 56.6 43 0.00094 20.4 8.8 62 79-142 6-69 (113)
421 PF11768 DUF3312: Protein of u 55.4 1.2E+02 0.0025 24.9 10.2 25 43-67 411-435 (545)
422 smart00386 HAT HAT (Half-A-TPR 54.7 19 0.0004 15.6 3.8 16 159-174 1-16 (33)
423 PF13934 ELYS: Nuclear pore co 53.4 79 0.0017 22.5 10.8 71 115-191 113-183 (226)
424 KOG1166 Mitotic checkpoint ser 53.0 1.1E+02 0.0024 27.2 7.8 65 122-186 90-155 (974)
425 PF10345 Cohesin_load: Cohesin 52.9 1.4E+02 0.0029 25.0 17.5 165 41-206 60-251 (608)
426 KOG0403 Neoplastic transformat 52.7 1.2E+02 0.0026 24.3 7.6 72 81-157 515-586 (645)
427 COG2178 Predicted RNA-binding 52.5 77 0.0017 22.1 7.8 99 39-138 28-149 (204)
428 PRK12356 glutaminase; Reviewed 52.4 1E+02 0.0022 23.4 10.0 23 33-55 91-113 (319)
429 PF10475 DUF2450: Protein of u 52.1 96 0.0021 23.0 8.2 83 78-165 130-217 (291)
430 COG2405 Predicted nucleic acid 51.3 43 0.00092 21.8 4.1 32 122-153 121-152 (157)
431 PF05664 DUF810: Protein of un 50.9 1.6E+02 0.0034 25.1 8.3 67 105-171 212-289 (677)
432 PF10155 DUF2363: Uncharacteri 50.7 64 0.0014 20.6 10.6 45 128-172 81-125 (126)
433 PF13934 ELYS: Nuclear pore co 50.5 90 0.0019 22.2 10.1 106 43-159 79-186 (226)
434 KOG2062 26S proteasome regulat 50.2 1.7E+02 0.0036 25.3 12.0 28 147-174 212-239 (929)
435 PF12926 MOZART2: Mitotic-spin 50.0 52 0.0011 19.4 8.1 42 131-172 29-70 (88)
436 KOG2659 LisH motif-containing 49.9 93 0.002 22.2 9.0 97 72-170 23-128 (228)
437 PRK14958 DNA polymerase III su 49.5 1.4E+02 0.0031 24.3 11.4 75 67-144 192-279 (509)
438 TIGR03581 EF_0839 conserved hy 49.0 82 0.0018 22.3 5.4 82 91-172 137-235 (236)
439 smart00777 Mad3_BUB1_I Mad3/BU 49.0 60 0.0013 20.7 4.5 40 130-169 83-123 (125)
440 cd08790 DED_DEDD Death Effecto 48.4 38 0.00083 20.4 3.3 56 52-109 36-91 (97)
441 TIGR01503 MthylAspMut_E methyl 48.3 1.3E+02 0.0028 24.1 7.0 84 55-142 69-166 (480)
442 COG2909 MalT ATP-dependent tra 48.0 1.9E+02 0.0042 25.3 14.6 180 25-204 471-683 (894)
443 KOG2066 Vacuolar assembly/sort 47.6 1.9E+02 0.004 25.1 13.8 142 22-172 366-532 (846)
444 PF08870 DUF1832: Domain of un 47.6 68 0.0015 20.0 5.3 13 144-156 81-93 (113)
445 PRK10304 ferritin; Provisional 47.3 85 0.0019 21.1 6.5 96 56-160 51-146 (165)
446 KOG1308 Hsp70-interacting prot 46.9 44 0.00095 25.5 4.2 116 52-172 126-242 (377)
447 PF02631 RecX: RecX family; I 46.6 71 0.0015 19.9 11.5 97 57-159 9-106 (121)
448 PRK10941 hypothetical protein; 46.5 1.2E+02 0.0025 22.4 10.6 81 111-192 182-263 (269)
449 KOG2223 Uncharacterized conser 46.2 1.5E+02 0.0033 23.6 9.5 42 98-139 462-503 (586)
450 KOG1114 Tripeptidyl peptidase 45.8 2.2E+02 0.0048 25.4 11.6 79 127-206 1213-1292(1304)
451 KOG1550 Extracellular protein 45.6 1.7E+02 0.0038 24.1 14.4 117 56-176 228-359 (552)
452 TIGR02710 CRISPR-associated pr 45.0 1.5E+02 0.0032 23.2 10.6 54 47-100 137-196 (380)
453 TIGR01914 cas_Csa4 CRISPR-asso 44.3 1.4E+02 0.0031 22.8 7.5 67 120-191 286-352 (354)
454 PF10255 Paf67: RNA polymerase 44.1 50 0.0011 25.9 4.3 62 146-207 123-191 (404)
455 cd00245 Glm_e Coenzyme B12-dep 43.3 1.7E+02 0.0036 23.3 7.4 45 55-102 26-70 (428)
456 PF05476 PET122: PET122; Inte 42.9 1.3E+02 0.0028 21.9 7.5 86 52-139 22-112 (267)
457 COG2405 Predicted nucleic acid 42.6 70 0.0015 20.9 4.0 50 69-120 105-154 (157)
458 PF08424 NRDE-2: NRDE-2, neces 42.5 1.5E+02 0.0032 22.4 16.2 113 92-206 48-180 (321)
459 PF09477 Type_III_YscG: Bacter 42.5 83 0.0018 19.6 9.6 76 123-205 19-94 (116)
460 KOG1147 Glutamyl-tRNA syntheta 42.5 65 0.0014 26.3 4.7 68 132-207 255-330 (712)
461 smart00638 LPD_N Lipoprotein N 42.1 2E+02 0.0043 23.8 16.5 63 39-106 309-371 (574)
462 KOG0686 COP9 signalosome, subu 42.1 1.7E+02 0.0038 23.1 13.7 163 40-206 150-330 (466)
463 KOG0890 Protein kinase of the 42.0 3.7E+02 0.008 26.9 14.2 113 19-134 1427-1542(2382)
464 TIGR01503 MthylAspMut_E methyl 41.6 67 0.0015 25.6 4.6 48 89-139 68-115 (480)
465 PRK13342 recombination factor 41.6 1.7E+02 0.0037 23.0 15.2 43 113-155 230-275 (413)
466 PF12796 Ank_2: Ankyrin repeat 41.5 68 0.0015 18.2 4.7 81 84-179 3-86 (89)
467 COG4941 Predicted RNA polymera 41.3 1.6E+02 0.0036 22.6 11.2 121 55-178 271-398 (415)
468 COG0819 TenA Putative transcri 41.2 1.3E+02 0.0028 21.4 9.1 98 100-197 99-207 (218)
469 KOG0403 Neoplastic transformat 40.9 1.9E+02 0.0042 23.3 7.9 63 112-175 511-573 (645)
470 KOG0376 Serine-threonine phosp 40.8 1.3E+02 0.0027 24.2 5.9 104 47-156 11-116 (476)
471 KOG0376 Serine-threonine phosp 40.7 1.3E+02 0.0028 24.2 5.9 105 83-193 12-118 (476)
472 PF06552 TOM20_plant: Plant sp 40.5 1.2E+02 0.0026 20.9 9.3 28 126-155 96-123 (186)
473 PF12816 Vps8: Golgi CORVET co 40.3 59 0.0013 22.5 3.9 77 37-118 19-95 (196)
474 PF06552 TOM20_plant: Plant sp 39.9 1.2E+02 0.0027 20.8 9.0 30 161-192 96-125 (186)
475 PF04762 IKI3: IKI3 family; I 39.6 1.5E+02 0.0033 26.4 6.8 28 77-104 814-843 (928)
476 COG5210 GTPase-activating prot 39.5 2.1E+02 0.0045 23.3 11.1 49 94-142 361-409 (496)
477 PF05944 Phage_term_smal: Phag 39.3 1.1E+02 0.0023 19.8 8.2 31 112-142 50-80 (132)
478 PF14853 Fis1_TPR_C: Fis1 C-te 39.1 60 0.0013 17.0 6.0 23 152-174 8-30 (53)
479 PF15469 Sec5: Exocyst complex 38.9 1.2E+02 0.0027 20.5 9.3 23 159-181 153-175 (182)
480 PF14744 WASH-7_mid: WASH comp 38.9 1.2E+02 0.0026 23.2 5.4 53 54-106 170-228 (350)
481 KOG3364 Membrane protein invol 38.8 1.1E+02 0.0024 20.0 9.5 67 73-139 30-100 (149)
482 smart00164 TBC Domain in Tre-2 38.7 1.3E+02 0.0027 20.5 5.9 40 166-205 152-192 (199)
483 PF09797 NatB_MDM20: N-acetylt 38.3 1.8E+02 0.004 22.3 9.0 61 80-141 185-248 (365)
484 PRK14963 DNA polymerase III su 38.3 2.2E+02 0.0048 23.3 10.4 84 57-143 179-274 (504)
485 PF08311 Mad3_BUB1_I: Mad3/BUB 38.1 1.1E+02 0.0023 19.5 9.6 43 128-170 81-124 (126)
486 TIGR03184 DNA_S_dndE DNA sulfu 37.8 98 0.0021 19.0 5.2 17 175-191 79-95 (105)
487 COG4003 Uncharacterized protei 37.7 85 0.0018 18.3 5.2 24 152-175 38-61 (98)
488 PF14840 DNA_pol3_delt_C: Proc 37.6 49 0.0011 21.0 2.9 26 88-113 10-35 (125)
489 PF07720 TPR_3: Tetratricopept 37.4 51 0.0011 15.6 3.7 21 149-169 5-25 (36)
490 PF09868 DUF2095: Uncharacteri 37.2 1.1E+02 0.0023 19.3 5.3 25 116-140 67-91 (128)
491 KOG1839 Uncharacterized protei 36.8 3.5E+02 0.0075 25.1 8.9 122 85-206 942-1083(1236)
492 PRK00794 flbT flagellar biosyn 36.6 1.2E+02 0.0026 19.6 5.3 67 107-173 51-121 (132)
493 PF05664 DUF810: Protein of un 36.5 2.7E+02 0.0059 23.8 7.7 70 33-102 210-293 (677)
494 smart00164 TBC Domain in Tre-2 36.2 1.4E+02 0.003 20.3 5.4 82 55-140 108-197 (199)
495 TIGR03362 VI_chp_7 type VI sec 35.5 1.8E+02 0.0038 21.9 5.9 57 118-174 221-279 (301)
496 smart00804 TAP_C C-terminal do 35.3 63 0.0014 17.7 2.7 19 158-176 38-56 (63)
497 cd08332 CARD_CASP2 Caspase act 35.0 99 0.0022 18.3 7.5 29 125-157 49-77 (90)
498 PF04910 Tcf25: Transcriptiona 35.0 2.1E+02 0.0046 22.1 17.6 58 116-173 109-167 (360)
499 KOG1524 WD40 repeat-containing 34.5 2.7E+02 0.0058 23.1 7.5 29 74-102 572-600 (737)
500 smart00544 MA3 Domain in DAP-5 34.4 1.1E+02 0.0024 18.6 9.9 60 44-105 6-67 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-41 Score=277.47 Aligned_cols=204 Identities=19% Similarity=0.283 Sum_probs=113.1
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 75 (207)
|.+.|+.||..+|+.+|.+|++.|++++|. ..|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 445555555555555555555555555554 4555555555555555555555555555555555555555555
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHh--CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLER--DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
.+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 5555555555555555555555555543 34555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-41 Score=277.10 Aligned_cols=204 Identities=16% Similarity=0.219 Sum_probs=100.9
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH-------H--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------K--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-------~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 73 (207)
|.+.|+.||..+|+.+|.+|++.|++++|. . .++.||..+|+++|.+|++.|++++|.++|++|.+.|++|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 334444444444444444444444444444 1 3344455555555555555555555555555554444444
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555555555555555555555555555555455555555555555555555555555555554454455555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555544444555555555555555555555555555444
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=260.24 Aligned_cols=200 Identities=19% Similarity=0.255 Sum_probs=174.0
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
+.+.|+.||..+|++++++|++.|++++|. +.-.++|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 456788889999999999999999999998 56667899999999999999999999999999999999999999999
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
.++.+|++.|++++|.+++..|.+.|+.|+..+|++++++|++.|++++|.++|++|.+ ||..+||+||.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999999888888888888888888888888888887764 57778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888776
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=246.97 Aligned_cols=194 Identities=16% Similarity=0.263 Sum_probs=164.1
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 81 (207)
.+|..+||++|.+|++.|++++|. ..|+.||..||++++.+|++.|++++|.+++.+|.+.|++||..+|+.|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 467888888888888888888877 6788888888888888888888888888888888888888888888888
Q ss_pred HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 8888888888888888888763 577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 162 MEADKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 162 ~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 888888888875 578888888888888888888888888888775
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-37 Score=250.51 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=151.2
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
|.+.|+.||..+||+++.+|++.|++++|. +.-..||..+|+++|.+|.+.|++++|+++|++|.+.|+.||..||+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 456788888888888888888888888888 55567888889999999999999999999999998888888888888
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-------------------
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG------------------- 140 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g------------------- 140 (207)
.++.+|++.|+.++|.++++.+.+.|+.|+..+|++++++|++.|++++|.++|++|.+.+
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 8888888888877777777777777777666666666666666666666666655553321
Q ss_pred -----------C-----------------------------------------------------------------CCC
Q 045498 141 -----------L-----------------------------------------------------------------VPG 144 (207)
Q Consensus 141 -----------~-----------------------------------------------------------------~~~ 144 (207)
+ .||
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d 553 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 1 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 44566666666666666667777777766666777777777777777777777777666665
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-37 Score=249.21 Aligned_cols=200 Identities=18% Similarity=0.244 Sum_probs=163.1
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
|.+.|+.||..+||.+|.+|++.|+++.|. +.-..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 456677788888888999999999999988 56667899999999999999999999999999999999999999999
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
.++.+|++.|+.+.+.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999888888888888888888888888888877753 56677777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 77777777777777777777766666666666666666666555544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=4.4e-16 Score=117.85 Aligned_cols=191 Identities=14% Similarity=0.063 Sum_probs=113.2
Q ss_pred hhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHH
Q 045498 13 HVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLI 82 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll 82 (207)
..+..+...|.+.|++++|. ....+++..++..+...+.+.|++++|.+.++.+.+.+..++. ..+..+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34555666666666666665 1112234556666666666666666666666666654322211 1234445
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 55566666666666666666543 22344555666666667777777777776665532222345666666777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+|...++++.+. .|+...+..+...+.+.|++++|..+++++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777766654 345555566666677777777777766654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=2.2e-15 Score=114.08 Aligned_cols=193 Identities=17% Similarity=0.104 Sum_probs=159.6
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-------HcCCCcc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-------KKGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 78 (207)
++..+++.++..+.+.|++++|. ..+..++ ...+..+...+.+.|++++|...|+++.+.. +.+...+
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 217 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRAS 217 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence 45678999999999999999998 2222221 2345667778889999999999999998764 3455678
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
..+...+.+.|++++|...++++.+.+......+++.+..+|.+.|++++|...++.+.+. .|+...+..+...+.+.
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHh
Confidence 8888999999999999999999987654434567889999999999999999999999887 46666778899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCchhHHHHHHHhhC
Q 045498 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV---KNETDRASSFLKKNM 207 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~ 207 (207)
|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|+
T Consensus 296 g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 296 EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 9999999999998876 6898899988887765 558899999888763
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.69 E-value=1.8e-14 Score=119.10 Aligned_cols=192 Identities=13% Similarity=-0.017 Sum_probs=136.2
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
+...+..+...+.+.|++++|. .....|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555666666666655 12233444555666666666677777776666666543 44566666677777
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
...|++++|...|+++.+.. +.+..+++.+...+.+.|+ .+|...+++..+.... +...+..+...+.+.|++++|.
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776664 3466677777777777777 6677777777665332 4556677788888999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
..|+++.+.+.. +..++..+..++.+.|++++|.+++++|+
T Consensus 858 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 858 PLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999987643 88899999999999999999999999885
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.67 E-value=7.5e-14 Score=115.47 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=102.9
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
+..+|..+...+.+.|++++|. ....+.++..+..+..++.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555555555555555 11112234445555555555555555555555555432 3334455555555
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++.+...+ |+..++..+..++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 555555555555555555443 2344455555556666666666666666655543 3334555555666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...++.+.+.. +.+..++..+...|...|++++|.++|+++
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 66666655542 334555666666666666666666666554
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.65 E-value=5.1e-16 Score=82.23 Aligned_cols=50 Identities=38% Similarity=0.674 Sum_probs=39.7
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 87 (207)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=1.1e-15 Score=81.00 Aligned_cols=49 Identities=51% Similarity=0.835 Sum_probs=29.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 191 (207)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.59 E-value=6.5e-12 Score=88.07 Aligned_cols=193 Identities=12% Similarity=-0.006 Sum_probs=156.4
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
....+..+...+...|++++|. -...+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3466778888899999999988 12223456778888899999999999999999998765 4456678888889
Q ss_pred HhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
+...|++++|...+++...... ......+..+..++...|++++|.+.+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876532 223456777888899999999999999998886433 56678888999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998876 3456677778888899999999999887654
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=8.9e-13 Score=96.56 Aligned_cols=194 Identities=19% Similarity=0.234 Sum_probs=110.6
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 81 (207)
+-+..+|.++|.++|+-...+.|. ....+.+..+||.+|.+-. +....+++.+|.....+||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 445678888888888877777666 3334445555555554432 22224555555555555555555555
Q ss_pred HhhHhhhcChhh----HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH-------------------------------
Q 045498 82 IHDNWEKQGRFS----AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW------------------------------- 126 (207)
Q Consensus 82 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~------------------------------- 126 (207)
+++..+.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++.
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 555555555443 444555555555555555555555555555554
Q ss_pred -------------HHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 127 -------------EEARKKLDQLSEKG----LVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 127 -------------~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
+.|.++...+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 44443333332210 1111 112344455555666666666666666666566777777778
Q ss_pred HHHHHhcCchhHHHHHHHhh
Q 045498 187 IQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m 206 (207)
+++....|.++-..++|.++
T Consensus 440 lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHHHhhcCcchhHHHHHHHH
Confidence 88877788877777777765
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=7.5e-13 Score=96.94 Aligned_cols=168 Identities=19% Similarity=0.283 Sum_probs=136.8
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
..-.+.+..+|.+||.+.++-...+.|.+++++-.....+.+..+||.+|.+-.-... .+++.+|....+.||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence 4445667889999999999999999999999999988889999999999976554333 788999999999999999
Q ss_pred HHHHHHHHhcCCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCCC----C
Q 045498 113 YSLVIDGLCRVGRWEE----ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME-ADKLLVQMKEK----GCFP----D 179 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~----~~~p----~ 179 (207)
||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.+++.. .++| +
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999999998776 46688899999999999999999999999998854 55555555532 2333 3
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 180 STSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
..-|..-+..|.+..+.+-|.++..
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ 380 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHG 380 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446667777888888887777643
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.50 E-value=2.8e-11 Score=97.16 Aligned_cols=93 Identities=19% Similarity=0.151 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 045498 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST-SFNTVIQ 188 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~ 188 (207)
...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...|+.+.+. .|+.. .+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 334444444444445555555555444443221 2333444444455555555555555544443 22221 1222333
Q ss_pred HHHhcCchhHHHHHHHh
Q 045498 189 GFLVKNETDRASSFLKK 205 (207)
Q Consensus 189 ~~~~~~~~~~a~~~~~~ 205 (207)
++...|+.++|...+++
T Consensus 361 al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 361 ALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44455555555555443
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=4e-11 Score=84.04 Aligned_cols=167 Identities=17% Similarity=0.119 Sum_probs=140.1
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 4446778889999999999999999999998764 4456788888899999999999999999988775 3356778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
...+...|++++|.+.++...+.... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 89999999999999999999875322 234567778889999999999999999988763 3356788889999999999
Q ss_pred hhHHHHHHHhh
Q 045498 196 TDRASSFLKKN 206 (207)
Q Consensus 196 ~~~a~~~~~~m 206 (207)
+++|.+++++.
T Consensus 185 ~~~A~~~~~~~ 195 (234)
T TIGR02521 185 YKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.7e-12 Score=94.13 Aligned_cols=191 Identities=15% Similarity=0.034 Sum_probs=107.9
Q ss_pred hhhhHHHHHhhhhhhhHHHHH---HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI---KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~---~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~ 85 (207)
+..+..++.. ...+++++|. ..+ ..+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3445555555 5777777777 222 24566777888888889999999999999876532 345677788888888
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
.+.|+.++|.+.+++..+... -+......++..+...|+.+++.++++...+.. ..|...+..+..++...|++++|.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence 999999999999999887742 257778888889999999999888888877664 335667788899999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..|+...+.. +.|+.+...+..++...|+.++|.++.++.
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccc
Confidence 9999988752 447888888999999999999999887764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=6.1e-11 Score=95.25 Aligned_cols=154 Identities=12% Similarity=-0.052 Sum_probs=88.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH-
Q 045498 50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE- 128 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~- 128 (207)
+...|++++|...++.+.+....++...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 44555555555555555443222222333334445555666666666666655543 2244555556666666666664
Q ss_pred ---HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 129 ---ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 129 ---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
|...+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666655322 45566666677777777777777777766542 22345566666677777777777776665
Q ss_pred h
Q 045498 206 N 206 (207)
Q Consensus 206 m 206 (207)
+
T Consensus 344 a 344 (656)
T PRK15174 344 L 344 (656)
T ss_pred H
Confidence 4
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=8.9e-11 Score=94.05 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=83.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
..+|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...++.+...
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444444445555555555555555554432 2233344444445555555555555555544432 2234455555555
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVV------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
+...|++++|.+.|++........+.. .++.....+...|++++|..++++..+.. +.+..++..+...+.+.
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 566666666666666555442211110 11111222233466666666666655542 22334566777777778
Q ss_pred CchhHHHHHHHhh
Q 045498 194 NETDRASSFLKKN 206 (207)
Q Consensus 194 ~~~~~a~~~~~~m 206 (207)
|++++|.++|++.
T Consensus 556 g~~~eAi~~~e~A 568 (615)
T TIGR00990 556 GDVDEALKLFERA 568 (615)
T ss_pred cCHHHHHHHHHHH
Confidence 8888887777654
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=1.7e-10 Score=95.58 Aligned_cols=192 Identities=9% Similarity=-0.078 Sum_probs=139.3
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
|+......+...+...|++++|. ....+|+...+..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 55443333344445778888877 12224444556666777788888888888888887764 2232333333334
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
....|++++|...+++..+.. |+...+..+..++.+.|++++|...+++.....+. +...++.+...+...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 445588999999998887764 46778888888899999999999999998887543 566777888888899999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...++...+.. +-+...+..+..++...|++++|...+++.
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999888762 336678888889999999999999988865
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=2.1e-10 Score=91.94 Aligned_cols=191 Identities=14% Similarity=-0.046 Sum_probs=142.3
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 13 HVYGIRINGMCKIREIDSAI-----KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
..|+.+...+...|++++|+ .....|+ ...|..+...+...|++++|+..|++..+.. +.+..+|..+...+.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45677777777888998888 2223443 5577888888888999999999999887764 445678888888889
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+... -+...++.+...+...|++++|..
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999888765 33567777888888899999999999998887632 256788888889999999999999
Q ss_pred HHHHHHHcCCCCChh------hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 167 LLVQMKEKGCFPDST------SFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|+...+..-..+.. .+......+...|++++|.+++++.
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999887653211111 1122222334468899999888764
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=7.8e-12 Score=90.66 Aligned_cols=186 Identities=16% Similarity=0.088 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc
Q 045498 16 GIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 89 (207)
..+.......++++.|. -...+-++..+..++.. ...+++++|.+++.+..+. .+++..+..++..+...+
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 33444455567777777 11111245566667766 6888888888888776554 356667788888889999
Q ss_pred ChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 90 GRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
+++++..+++...+.. .+.+...|..+...+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999876543 3456778888888999999999999999999887433 5778888999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 169 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...+.. +.|+..+..+..++...|+.++|..++++.
T Consensus 204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 8888764 556677888999999999999999998864
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=2.5e-09 Score=81.30 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=113.1
Q ss_pred HHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-------------------
Q 045498 19 INGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA------------------- 73 (207)
Q Consensus 19 l~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------------------- 73 (207)
...+...|+++.|. ....+-++.....+...|.+.|+|++|..++..+.+.+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666 22223345666667777777777777777666666543321
Q ss_pred ----------------------chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 74 ----------------------ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 74 ----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
++.....+...+...|+.++|..++++..+. +|+... .++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 1112222334445555666666666555543 223211 12223334466666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+...+.... |......+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-
T Consensus 316 ~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 316 VLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655322 4555677788888899999999999988875 688888888999999999999998888763
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=6.3e-10 Score=79.03 Aligned_cols=192 Identities=16% Similarity=0.078 Sum_probs=151.8
Q ss_pred hhHHHHHhhhhhhhHHHHH----HcCCCccH------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 14 VYGIRINGMCKIREIDSAI----KKGICLDV------FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~----~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
+.-+|-+.|-+.|.+|.|+ ..--.||. ...-.|-.-|...|-++.|+.+|..+.+.+ ..-......|+.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHH
Confidence 4456777888899999999 11223332 334445666888899999999999998865 345568899999
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
.|....+|++|.++-+++.+.+-.+.. ..|..+...+....+.+.|...+++..+...+ .+..-..+-+.+...|
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g 228 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKG 228 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhcc
Confidence 999999999999999999887755432 35666777777788899999999998887543 4445556668899999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
++++|.+.++...+++...-+.+...|..+|...|+.++...++.++|
T Consensus 229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999998776677889999999999999999999988764
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=1.4e-09 Score=90.23 Aligned_cols=189 Identities=10% Similarity=-0.017 Sum_probs=145.4
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
+...|..+..++.. ++.++|+ .....|+......+...+.+.|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 45566666666665 7777777 2333455544434455556899999999999998654 45555566777788
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
...|+.++|...+++..+.. +.+...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998775 223344444445556779999999999999987 467888999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+++..+.. +.+...+..+..++...|++++|.+.+++.
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999998873 336677888888999999999999998865
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=3.8e-09 Score=83.61 Aligned_cols=150 Identities=12% Similarity=-0.023 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
+++++|...+++..+.+ +-+...+..+-..+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34667777777776654 3455566666666667777777777777776654 224556666666777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++..+.... +...+..++..+...|++++|...+++..+...+-++..+..+..++...|+.++|.+.++++
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 777766432 222233334445556777777777777665422223344555666667777777777776653
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=4.1e-11 Score=94.73 Aligned_cols=188 Identities=17% Similarity=0.120 Sum_probs=135.6
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH------------------------------HcCCCccHHhHHHHHHHHHh
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI------------------------------KKGICLDVFVYSSLINGLCT 52 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~------------------------------~~~~~~~~~~~~~ll~~~~~ 52 (207)
+...|+.|+..||..+|.-||..|+++.|- ++.-.|.+.+|+.|+.+|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~ 95 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI 95 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence 457899999999999999999999987654 23346788999999999999
Q ss_pred cCChhH---HHHHHHHHHh----CCC-----------------CcchhhHHHHHhhHhhhcChhhHHHHH----------
Q 045498 53 FNRLKE---AVELFDKMVA----QGI-----------------TAELVTYNPLIHDNWEKQGRFSAMALL---------- 98 (207)
Q Consensus 53 ~~~~~~---a~~~~~~m~~----~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~---------- 98 (207)
+|+... +.+.+..... .|+ -||..+ .+......|-++.+++++
T Consensus 96 hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 96 HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 998655 3332222221 121 111111 111112222222222222
Q ss_pred ------HHH-------------HhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 99 ------QTL-------------ERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 99 ------~~m-------------~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
+++ .+... .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-.|+-+ .
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~ 249 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I 249 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence 111 11112 488999999999999999999999999999999999998888888876 8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 196 (207)
++...+..++.-|++.|+.|+..|+..-+-.+.++|..
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 88899999999999999999999999888887775543
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=4.9e-09 Score=83.01 Aligned_cols=174 Identities=10% Similarity=-0.058 Sum_probs=128.4
Q ss_pred hhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498 26 REIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 26 g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
+++++|. .....| +...+..+-..+...|++++|...|++..+.+ +.+...+..+-.++...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3466666 222333 56778888888899999999999999999875 4556778888889999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 045498 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179 (207)
Q Consensus 100 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 179 (207)
+..+.... +...+..+...+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++... .|+
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~ 473 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT 473 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence 99887543 333334445556678999999999999876532224555777888889999999999999987665 343
Q ss_pred -hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 180 -STSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 180 -~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
....+.+...|...| ++|...+++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 344455555667766 466666654
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.26 E-value=3.9e-09 Score=90.18 Aligned_cols=130 Identities=13% Similarity=0.014 Sum_probs=84.9
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
...+..+-..+.+.|+.++|...|++..+.. +.+...+..+...+...|++++|.+.++...+... .+......+..+
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~ 680 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALA 680 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHH
Confidence 3344455556666777777777777776654 23566777777777777777777777777665422 134455666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC--CC---ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 155 LCKKGMIMEADKLLVQMKEKGC--FP---DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+.+.|++++|.++++.+..... .| +...+..+...+...|+.++|.+.|++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777888888888877765421 11 2234555566777778888888777765
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=8.4e-10 Score=84.82 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 122 (207)
+..+...|...|+.+-|+..|++..+.. +-=+..|+.|-.++...|++.+|.+.|.+..... +-.....+.+...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3344444444444444444444444331 1112344444444444444444444444444332 1123344444444444
Q ss_pred CCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCchhHHH
Q 045498 123 VGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS-TSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 200 (207)
.|.+++|..+|....+. .|. ...++.|...|-+.|++++|...|++... +.|+- .+|+.+-..|-..|+.+.|.
T Consensus 367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 44444444444444433 122 23344455555555555555555554443 23332 34445555555555555555
Q ss_pred HHHHh
Q 045498 201 SFLKK 205 (207)
Q Consensus 201 ~~~~~ 205 (207)
+.+.+
T Consensus 443 q~y~r 447 (966)
T KOG4626|consen 443 QCYTR 447 (966)
T ss_pred HHHHH
Confidence 54443
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.24 E-value=5.3e-09 Score=89.37 Aligned_cols=189 Identities=13% Similarity=0.061 Sum_probs=130.9
Q ss_pred hHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 15 YGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
+..+...+...|++++|+ .....| ++..+..+...+.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 344556677788888888 222233 56677888888999999999999999987653 22333332222233334
Q ss_pred cChhhHHHHHHHHHhC---------------------------------------CCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 89 QGRFSAMALLQTLERD---------------------------------------KYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
++.++|...++.+... ..+.+...+..+...+.+.|++++|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 4444444443332110 1233455667788888899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+.|+...+.... +...+..+...+...|++++|...++...+.. +.+..+...+..++...|++++|.++++++
T Consensus 623 ~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 623 RAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998887543 67888889999999999999999999877642 234566777888888999999999998875
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=2.9e-08 Score=75.89 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677778888888888888885444444688888888888888888888888888763
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-09 Score=83.83 Aligned_cols=188 Identities=14% Similarity=0.011 Sum_probs=146.1
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 13 HVYGIRINGMCKIREIDSAI-----KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
..|..+...|-..|.+|-|+ .....|+ +..|+.|..++-..|++.+|.+.|.+..... +......+.|-+++.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 35555556666677777777 3344554 5789999999999999999999999988763 334567888889999
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~ 165 (207)
..|.+++|.++|....+.... -...++.+...|-..|++++|...+++..+- +|+ ...|+.+-..|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999887765322 3567888889999999999999999988875 555 567888888888888889998
Q ss_pred HHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 166 KLLVQMKEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 166 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+.+.... .|. ..+++.|...|-..|++.+|.+-+++.
T Consensus 443 q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 443 QCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 888887765 343 467888888888899988888887764
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.21 E-value=2.1e-08 Score=76.31 Aligned_cols=181 Identities=10% Similarity=-0.006 Sum_probs=133.2
Q ss_pred HhhhhhhhHHHHH-----HcCCCccHHhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 20 NGMCKIREIDSAI-----KKGICLDVFVYS--SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 20 ~~~~~~g~~~~a~-----~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
.+..+.|+++.|. .....|+...+. .....+...|+++.|...++++.+.. |-++.....+...+.+.|+++
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 3336788888887 344455554433 33567888999999999999998876 556788999999999999999
Q ss_pred hHHHHHHHHHhCCCCc-----------------------------------------cHHHHHHHHHHHhcCCCHHHHHH
Q 045498 93 SAMALLQTLERDKYEL-----------------------------------------NIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~-----------------------------------------~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
+|..++..+.+.+..+ +......+...+.+.|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998888887654321 22234455667778888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++++..+. .|+.. -.++.+....++++++.+..+...+. .+-|...+..+.+.+.+.+++++|.+.|++.
T Consensus 285 ~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 285 IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888774 33432 22344445668888999988888876 2335566888999999999999999999875
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.5e-09 Score=83.48 Aligned_cols=191 Identities=16% Similarity=0.061 Sum_probs=139.6
Q ss_pred chhhhHHHHHhhhhhhhHHHHH---HcCCCcc---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI---KKGICLD---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
.+.+|.++-++|.-+++.+.|+ ++.+..| ..+|+.+-+-+.....+|.|...|+...... +.+-..|--|-..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTV 498 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhh
Confidence 3467888888888888888887 4454444 3556666666777778888888887776542 2233445556678
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
|.+.++.+.|+-.|++..+.+.. +.+....+...+.+.|+.++|++++++......+ |+..--.-...+.-.+++++|
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHH
Confidence 88888888888888888877633 6666677777888888999999999988887665 555555556666778889999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+..++++++. ++-+...|..+.+.|.+.|+.+.|+.-|.-
T Consensus 577 l~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 577 LQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 9999998876 333456788888899999988888776543
No 37
>PF12854 PPR_1: PPR repeat
Probab=99.17 E-value=5.2e-11 Score=57.07 Aligned_cols=32 Identities=31% Similarity=0.650 Sum_probs=21.4
Q ss_pred CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 175 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.17 E-value=3.1e-08 Score=81.34 Aligned_cols=184 Identities=10% Similarity=-0.048 Sum_probs=139.3
Q ss_pred HhhhhhhhHHHHH-------HcCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc---chhhHHHHHhhHhhh
Q 045498 20 NGMCKIREIDSAI-------KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA---ELVTYNPLIHDNWEK 88 (207)
Q Consensus 20 ~~~~~~g~~~~a~-------~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~ 88 (207)
.++...|++++|+ ..+.+ |+. .-..+...+...|++++|+..|+++....... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3455668888888 22221 322 22225678899999999999999987653111 123456667788999
Q ss_pred cChhhHHHHHHHHHhCCC-----------Ccc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKY-----------ELN---IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
+++++|...++.+.+... .|+ ...+..+...+...|++++|.++++++...... +...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 999999999999887531 123 234566778889999999999999999887543 67888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...|++++|++.+++..+.. +.+...+..+...+.+.|++++|..+++++
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999998863 334677777888899999999999999875
No 39
>PF12854 PPR_1: PPR repeat
Probab=99.16 E-value=5.5e-11 Score=56.98 Aligned_cols=33 Identities=48% Similarity=0.865 Sum_probs=23.9
Q ss_pred cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 045498 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66 (207)
Q Consensus 34 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 66 (207)
+|+.||..+|++||++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366777777777777777777777777777766
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.16 E-value=2.3e-08 Score=70.66 Aligned_cols=168 Identities=11% Similarity=-0.043 Sum_probs=126.4
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH--H
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--E 111 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~ 111 (207)
......+-.+...+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 5566778888889999999999999999998763 2222 46677788999999999999999999876432111 2
Q ss_pred HHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHH
Q 045498 112 VYSLVIDGLCRV--------GRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKGMIMEADK 166 (207)
Q Consensus 112 ~~~~li~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~~~~~a~~ 166 (207)
++..+..++.+. |+++.|.+.++.+.+.... +...+ ..+...+.+.|++++|..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 455555555544 7889999999999876432 22121 134566788999999999
Q ss_pred HHHHHHHcCC--CCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 167 LLVQMKEKGC--FPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 167 ~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.++...+..- +.....+..+..++.+.|++++|..+++.+
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999987621 224578899999999999999999988764
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.7e-08 Score=75.15 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=138.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+-+-|....+...|.+-++...+.. +.|-..|..+-.+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 344444555666778899999999999876 4456789999999999999999999999998876 44888999999999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
.-.+...-|+-.|++.....+. |...|.+|-.+|.+.+++++|.+.|.+....|-. +...+..|.+.+-+.++..+|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999887544 7889999999999999999999999999887633 6688999999999999999999
Q ss_pred HHHHh
Q 045498 201 SFLKK 205 (207)
Q Consensus 201 ~~~~~ 205 (207)
+++++
T Consensus 487 ~~yek 491 (559)
T KOG1155|consen 487 QYYEK 491 (559)
T ss_pred HHHHH
Confidence 98876
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=5e-09 Score=80.76 Aligned_cols=166 Identities=10% Similarity=-0.073 Sum_probs=137.6
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
+-++.+|.++-++|.-.++.+.|++.|++....+ +-...+|+.+-.-+....++|.|...|+........ +-..|..+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhh
Confidence 4467899999999999999999999999998764 336788999989999999999999999987765322 34566677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 196 (207)
...|.|.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|+.++++....... |+..-..-...+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 78899999999999999999987654 6777788888899999999999999998876432 555555567778889999
Q ss_pred hHHHHHHHhh
Q 045498 197 DRASSFLKKN 206 (207)
Q Consensus 197 ~~a~~~~~~m 206 (207)
++|++.++++
T Consensus 574 ~eal~~LEeL 583 (638)
T KOG1126|consen 574 VEALQELEEL 583 (638)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.5e-09 Score=73.74 Aligned_cols=160 Identities=9% Similarity=-0.016 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
.-=+-+-.+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-++|.+..++..|+.++.+-... ++.++.....+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33355667777777777777777776665 345557777777777777777777777766554 233444444556666
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
-..++.++|.++++...+.... ++....++...|.-.++++-|..+|+++...|+. ++..|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 6677777777777777665432 5666666666677777777777777777777654 6666777777777777777666
Q ss_pred HHHHh
Q 045498 201 SFLKK 205 (207)
Q Consensus 201 ~~~~~ 205 (207)
.-|++
T Consensus 379 ~sf~R 383 (478)
T KOG1129|consen 379 PSFQR 383 (478)
T ss_pred HHHHH
Confidence 55554
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.11 E-value=1.8e-07 Score=68.40 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=111.4
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC----------
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---------- 106 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------- 106 (207)
.++...+-+........|++..|..-+.++.+.+ +..+........+|.+.|++..+..++..+.+.+.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le 228 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE 228 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence 3344444444445555555555555555555543 33445555555566666666655555555555442
Q ss_pred -------------------------------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC------------
Q 045498 107 -------------------------------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP------------ 143 (207)
Q Consensus 107 -------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~------------ 143 (207)
+-++..-.+++.-+.++|+.++|.++.++..+.+..|
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~ 308 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPG 308 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence 2234445566667778888888888877766553322
Q ss_pred ------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 144 ------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 144 ------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
++..+.+|-..|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.++.++
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 3355688888899999999999999976665 78999999999999999999999998876
Q ss_pred h
Q 045498 206 N 206 (207)
Q Consensus 206 m 206 (207)
.
T Consensus 387 ~ 387 (400)
T COG3071 387 A 387 (400)
T ss_pred H
Confidence 4
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.4e-09 Score=75.14 Aligned_cols=155 Identities=10% Similarity=-0.075 Sum_probs=99.1
Q ss_pred HHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH-HHHHhhHhhhc
Q 045498 16 GIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY-NPLIHDNWEKQ 89 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~ 89 (207)
+.+-.+|.+.|.+.+|. .....|-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+|| .-..+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 44556666777776666 3444666677777777777777777777777776654 2333333 33445566667
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
+.+++.++|+...+.. +.++.....+...|.-.++++.|.+.++++.+.|+. +...|+.+--+|.-.+++|-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777766553 335555556666666667777777777777777765 66666666666666666666666666
Q ss_pred HHHHc
Q 045498 170 QMKEK 174 (207)
Q Consensus 170 ~m~~~ 174 (207)
+....
T Consensus 383 RAlst 387 (478)
T KOG1129|consen 383 RALST 387 (478)
T ss_pred HHHhh
Confidence 65543
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=6e-08 Score=70.92 Aligned_cols=186 Identities=16% Similarity=-0.034 Sum_probs=123.3
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 13 HVYGIRINGMCKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
..|......|.+.|+.++|. .... +.++..|+.+-..+...|++++|...|++..+.. +-+..++..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45666667778888888887 2222 3357888889999999999999999999988764 334567777777888
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
..|++++|.+.++...+.. |+..........+...++.++|...+++..... .|+. |.. .......|+...+ .
T Consensus 144 ~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ--WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc--cHH-HHHHHHccCCCHH-H
Confidence 8899999999999887764 332212222223445678899999886655432 2222 221 2222335555443 3
Q ss_pred HHHHHHHcC---C--CC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 167 LLVQMKEKG---C--FP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 167 ~~~~m~~~~---~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.++.+.+.- . .| ...+|..+...+.+.|++++|...|++.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455544321 1 11 2357888999999999999999999875
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=1.9e-07 Score=63.67 Aligned_cols=186 Identities=12% Similarity=-0.048 Sum_probs=124.1
Q ss_pred hhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498 14 VYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 87 (207)
+..-+--.|...|+...|. ...+.| +..+|..+...|-+.|+.+.|.+-|++..+.. +-+..+.|..-..+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445556666777776666 222233 34567777777777788888887777777664 3455667777777777
Q ss_pred hcChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 88 KQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
.|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.+++..+.... ...+.-.+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777765442 1122456777777777777778888877777776433 34566667777777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
.++.....+. ++..+....|+.--..|+-+.+.++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 7777776654 6777777777777777776666554
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.2e-07 Score=64.73 Aligned_cols=162 Identities=15% Similarity=0.005 Sum_probs=138.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
.+..-|--.|.+.|++..|.+-+++..+.. +-+..+|..+-..|.+.|+.+.|.+.|++..+.... +..+.|..-.-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 446667778999999999999999999875 556678999999999999999999999998887533 678899999999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
|..|++++|...|++......-+ ...+|..+.-+..+.|+.+.|...|++..+.. +-.+.+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988763322 35689999999999999999999999998874 23556788888999999999999
Q ss_pred HHHHHh
Q 045498 200 SSFLKK 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
..+++.
T Consensus 193 r~~~~~ 198 (250)
T COG3063 193 RLYLER 198 (250)
T ss_pred HHHHHH
Confidence 988875
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.07 E-value=1.6e-07 Score=76.96 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=147.9
Q ss_pred HHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCcchhhHHHHHhh
Q 045498 17 IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-----ITAELVTYNPLIHD 84 (207)
Q Consensus 17 ~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~ 84 (207)
-.+-++...|+..+++ ..+.+....+-..+.++|...+++++|+.+|.++.... .+++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 4456667778877777 45556566788889999999999999999999997643 12333345788999
Q ss_pred HhhhcChhhHHHHHHHHHhCCC-----------Ccc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKY-----------ELN---IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
+...+++++|..+++.+.+... .|+ ...+..++..+...|++.+|++.++.+....+. |......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 9999999999999999987321 122 234455677889999999999999999887654 8889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...+...|.+..|...++..... -+-+..+......++...|++++|..+.++.
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999777665 2335677778888899999999998887654
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.03 E-value=1.1e-07 Score=72.81 Aligned_cols=178 Identities=10% Similarity=0.040 Sum_probs=99.6
Q ss_pred hhhHHHHH-----HcCCCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHH
Q 045498 25 IREIDSAI-----KKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMA 96 (207)
Q Consensus 25 ~g~~~~a~-----~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~ 96 (207)
.|+++.|. .....|++.. +-....+..+.|+++.|.+.+.+..+.. |+. ..--.....+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45566655 2223344333 2333455666677777777777776542 333 233334566677777777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 045498 97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN-ILINGL---CKKGMIMEADKLLVQMK 172 (207)
Q Consensus 97 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~ 172 (207)
.++.+.+... -+..+...+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..++....+..+.
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777777652 25566777777777777777777777777776543 222221 111111 22222222233444443
Q ss_pred HcC---CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 173 EKG---CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 173 ~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+.. .+.++..+..+...+...|+.++|.+.+++.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 331 1125666667777777777777777776653
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.8e-07 Score=69.88 Aligned_cols=190 Identities=15% Similarity=0.054 Sum_probs=154.9
Q ss_pred hhhHHHHHhhhhhhhHHHHH---HcCCCc---cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 13 HVYGIRINGMCKIREIDSAI---KKGICL---DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~---~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
.|+.++.+-|+-.++-++|. ++..+. ....|+.+-+-|....+...|.+-++...+-+ |.|-..|-.|-.+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 35566666677777778877 443333 34678889999999999999999999999885 778899999999999
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
-.+.+.=|+-.|++..... +-|...|.++-.+|.+.++.++|.+.|......|-. +...+..|...|-+.++..+|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999988875 448899999999999999999999999999988754 66899999999999999999999
Q ss_pred HHHHHHHc----CC-CC-ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 167 LLVQMKEK----GC-FP-DSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 167 ~~~~m~~~----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.|....+. |. .| ...+..-|...+.+.+++++|..+..+
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99877653 32 23 233444467778899999998876543
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.99 E-value=9.8e-09 Score=81.73 Aligned_cols=167 Identities=22% Similarity=0.226 Sum_probs=95.8
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------------CcchhhHHHHHhhHhhh
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI------------------------TAELVTYNPLIHDNWEK 88 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~~~~~~~~ll~~~~~~ 88 (207)
..|+.||.+||..+|.-|+..|+.+.|- +|.-|.-... .|...||..|+.+|...
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhc
Confidence 8899999999999999999999999988 7776653322 34556777777777777
Q ss_pred cChhh---HHHHHHHH----HhCCCCccHHHH--------------HHHHHHHhcCCCHHHHHHHH--------------
Q 045498 89 QGRFS---AMALLQTL----ERDKYELNIEVY--------------SLVIDGLCRVGRWEEARKKL-------------- 133 (207)
Q Consensus 89 ~~~~~---a~~~~~~m----~~~~~~~~~~~~--------------~~li~~~~~~~~~~~a~~~~-------------- 133 (207)
|+... +.+.+..+ ...|+......+ ...+.-..-.|-|+.+.++.
T Consensus 97 GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 97 GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 76544 22211111 111211000000 00011111111122221111
Q ss_pred --HHH-------------HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchh
Q 045498 134 --DQL-------------SEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD 197 (207)
Q Consensus 134 --~~~-------------~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 197 (207)
+++ .+.+. .|++.+|.+++.+-...|+.+.|..++.+|++.|++.+..-|..|+-+ .++..
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 111 11111 367778888888888888888888888888888877777766666655 44444
Q ss_pred HHHHHH
Q 045498 198 RASSFL 203 (207)
Q Consensus 198 ~a~~~~ 203 (207)
.+..++
T Consensus 254 ~~e~vl 259 (1088)
T KOG4318|consen 254 VFEFVL 259 (1088)
T ss_pred HHHHHH
Confidence 444333
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.97 E-value=3.5e-07 Score=75.00 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=130.7
Q ss_pred hhhhhhhHHHHH-----HcCCCccH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498 21 GMCKIREIDSAI-----KKGICLDV--FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 21 ~~~~~g~~~~a~-----~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 93 (207)
...+.|+++.|+ .....|+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345778888887 33344543 244 8888888889999999999998721 12222233333557778899999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
|.++++++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|...++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999887643 5677778888899999999999999998887 45655564444444456666669999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 174 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.. +-+...+..+..++.+.|-...|.++.++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 73 33677788888999999988888877653
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.6e-07 Score=68.19 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=88.5
Q ss_pred HhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh----hcChh
Q 045498 20 NGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE----KQGRF 92 (207)
Q Consensus 20 ~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~ 92 (207)
..+...|++++|+ ..+ .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 4455567777777 222 455666666777777777777777777776543 22 333333333322 23566
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQM 171 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m 171 (207)
+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777776554 3556667777777777777777777777776665443 555666666666666666 5566677766
Q ss_pred HHc
Q 045498 172 KEK 174 (207)
Q Consensus 172 ~~~ 174 (207)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.96 E-value=4.9e-07 Score=74.48 Aligned_cols=152 Identities=10% Similarity=-0.014 Sum_probs=73.7
Q ss_pred hHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 15 YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
..-.+......|+.++|+ ....+.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334444445555555554 11112233345555555555555555555555554442 23334444555555555
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
|++++|...+++..+.. +.+.. +..+..++...|+.++|...+++..+.... +...+..+...+...|..++|...+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 55555555555555442 22333 445555555555555555555555554322 3333344444555555555555555
Q ss_pred HH
Q 045498 169 VQ 170 (207)
Q Consensus 169 ~~ 170 (207)
+.
T Consensus 174 ~~ 175 (765)
T PRK10049 174 DD 175 (765)
T ss_pred Hh
Confidence 43
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=2.1e-07 Score=71.81 Aligned_cols=191 Identities=16% Similarity=0.108 Sum_probs=140.2
Q ss_pred HHHHHhhhhhhhHHHHH----------H--cC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-Ccch
Q 045498 16 GIRINGMCKIREIDSAI----------K--KG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-----GI-TAEL 75 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~----------~--~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~ 75 (207)
+.+...|...+++++|. . .| .+.-..+++.|-.+|.+.|++++|...+++..+- +. .|..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 34666777888888887 2 12 2223466788888999999999999888876431 21 1222
Q ss_pred -hhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--
Q 045498 76 -VTYNPLIHDNWEKQGRFSAMALLQTLERD---KYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----G-- 140 (207)
Q Consensus 76 -~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g-- 140 (207)
..++.+...+...+++++|..++....+. -+.+ ...+++.+-..|.+.|++++|.++++..... |
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 34667778889999999999998875432 1222 2468899999999999999999999987654 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----GC-FP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 141 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..-.-..++.|...|.+.+.+.+|.++|.+...- |. .| ...+|..|...|.+.|+++.|.++.+.+
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1112446788889999999999999999876532 31 22 3478999999999999999999988764
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=9.5e-08 Score=69.31 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=87.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH----hcC
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL----CRV 123 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 123 (207)
..+...|++++|++++..- .+.......+.++.+.++++.|.+.++.|.+.+ .| .+...+..++ .-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 3445566677666666432 244555666777777777788877777777653 22 2333333332 223
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch-hHHHHH
Q 045498 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET-DRASSF 202 (207)
Q Consensus 124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 202 (207)
..+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++-+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577777788776554 44567777777777777888888887777765543 23556666677776666666 445555
Q ss_pred HHh
Q 045498 203 LKK 205 (207)
Q Consensus 203 ~~~ 205 (207)
+.+
T Consensus 259 l~q 261 (290)
T PF04733_consen 259 LSQ 261 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=1.4e-06 Score=59.91 Aligned_cols=158 Identities=9% Similarity=0.040 Sum_probs=117.6
Q ss_pred HHhhhhhhhHHHHH--HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHH
Q 045498 19 INGMCKIREIDSAI--KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95 (207)
Q Consensus 19 l~~~~~~g~~~~a~--~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 95 (207)
+..|.+.|+++... ..+ ..|. ..+...++.+++...+++..+.+ +.+...|..+-..+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677788877765 111 1111 01223566788888888877765 667889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHH-hcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 96 ALLQTLERDKYELNIEVYSLVIDGL-CRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 96 ~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
..+++..+... -+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+.+.|++++|...|+.+.
T Consensus 94 ~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999888763 3677787777764 67777 59999999999998665 77888899999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHH
Q 045498 173 EKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 173 ~~~~~p~~~~~~~l~~~ 189 (207)
+. .+|+..-+. +|..
T Consensus 172 ~l-~~~~~~r~~-~i~~ 186 (198)
T PRK10370 172 DL-NSPRVNRTQ-LVES 186 (198)
T ss_pred hh-CCCCccHHH-HHHH
Confidence 87 345554443 3344
No 59
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=3.4e-06 Score=58.73 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=121.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498 44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 123 (207)
..+-..+...|+-+....+........ +-|....+...+...+.|++..|...+++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666667777777777776654432 4466677778888888999999999998887765 66888899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
|+.++|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+. -|...-..|.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999988888887544 566778888888888999999999888887643 26677777888888889998888765
Q ss_pred H
Q 045498 204 K 204 (207)
Q Consensus 204 ~ 204 (207)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=4.8e-07 Score=62.13 Aligned_cols=147 Identities=11% Similarity=0.077 Sum_probs=111.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
-+-.|.+.|+++.+..-.+.+... . . .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 344688889988875554332211 1 1 1223666677877788777765 4478899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGM--IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
+++|...+++..+.... +...+..+..++ .+.|+ .++|..++++..+.+. -+..++..+...+...|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988654 677788887764 67777 5999999999998743 3678888899999999999999999
Q ss_pred HHhhC
Q 045498 203 LKKNM 207 (207)
Q Consensus 203 ~~~m~ 207 (207)
|++++
T Consensus 167 ~~~aL 171 (198)
T PRK10370 167 WQKVL 171 (198)
T ss_pred HHHHH
Confidence 98863
No 61
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.88 E-value=9.9e-08 Score=72.00 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=103.1
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 110 (207)
..+.+.++.....+++.+....+.+.+..++.+.... ....-..|.+++++.|...|..+.+..+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 4556667778888888888888888899888888765 23333456789999999999999999999998999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
.+++.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998888877777777777777666655
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=4.2e-06 Score=65.34 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=34.9
Q ss_pred HhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 045498 20 NGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70 (207)
Q Consensus 20 ~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 70 (207)
..+...|++++|+ ...+.............+.+.|+.++|..+|..+.+.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4456677888877 33333345556667777778888888888888887775
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=9.8e-07 Score=68.25 Aligned_cols=194 Identities=16% Similarity=0.087 Sum_probs=140.8
Q ss_pred hhhHHHHHhhhhhhhHHHHH------------HcC-CCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhC-----C--C
Q 045498 13 HVYGIRINGMCKIREIDSAI------------KKG-ICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQ-----G--I 71 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~------------~~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~ 71 (207)
.+...+...|...|+++.|. ..| ..|.+.+ .+.+-..|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666899999999999999 122 1233322 333566788899999999999998642 2 1
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-----C-CCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-----K-YELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEK----- 139 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 139 (207)
+.-..+++.|-.+|.+.|++++|...+++..+. + ..|. ...++.+...+...++++.|..+++...+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222356777888899999999988877764322 1 1222 235667778889999999999998865432
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 140 GLV--PGVVTYNILINGLCKKGMIMEADKLLVQMKEK------GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 140 g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|.. --..+++.|...|...|++++|.++++..... +..+ ....++.|...|.+.+..++|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 211 12468999999999999999999999988653 1122 3467888999999999999999998763
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=4.4e-06 Score=62.75 Aligned_cols=156 Identities=10% Similarity=0.052 Sum_probs=106.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH---HHhhHhhhcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhc
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNP---LIHDNWEKQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCR 122 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 122 (207)
...+...|++++|.+.+++..+.. |.+...+.. ........+..+.+.+.+.. .....|+ ......+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 345567899999999999988763 334444442 11112223445555555544 1122233 3444556678889
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCchhHH
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPDS--TSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a 199 (207)
.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+... .|+. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999887533 466778888899999999999999998876522 1222 3456788889999999999
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
..++++.
T Consensus 206 ~~~~~~~ 212 (355)
T cd05804 206 LAIYDTH 212 (355)
T ss_pred HHHHHHH
Confidence 9998864
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-06 Score=66.01 Aligned_cols=188 Identities=18% Similarity=0.134 Sum_probs=128.9
Q ss_pred hHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 15 YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
|.-+...|....+-++.. ..--+-|+.+|..--....-.+++++|..=|++..+.. +-+...|-.+--+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 555556666655544444 12223356667766666666777888888887777654 33455566666666788
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-------CChhhHHHHHHHHHhcCCH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-------PGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-------~~~~~~~~li~~~~~~~~~ 161 (207)
+.++++...|++.+++ ++..+.+|+-....+...++++.|.+.|+...+...+ +.+..--+++..- -.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 8888888888888776 4556778888888999999999999999887765322 1111112222221 23788
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..|.++++...+...+ ...+|..|...-.+.|+.++|+++|++.
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8899988888776322 4577999999999999999999999863
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=4.3e-06 Score=60.06 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=107.6
Q ss_pred HHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHHhhHhh
Q 045498 18 RINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLIHDNWE 87 (207)
Q Consensus 18 ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~ 87 (207)
|-.-|-..|-+|.|+ ......-......|+..|-..++|++|+++-+++.+.+-.+.. ..|--|-..+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 445566778888887 2222333456777888888889999999988888776533322 233444455556
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
..+.+.|...+.+..+.+.+ .+..--.+-+.....|+++.|.+.++...+.+...-..+...|..+|.+.|++++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67778888888877766422 33333445567778888888888888888876555566777888888888888888888
Q ss_pred HHHHHHc
Q 045498 168 LVQMKEK 174 (207)
Q Consensus 168 ~~~m~~~ 174 (207)
+.++.+.
T Consensus 272 L~~~~~~ 278 (389)
T COG2956 272 LRRAMET 278 (389)
T ss_pred HHHHHHc
Confidence 8777665
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=1e-06 Score=57.44 Aligned_cols=91 Identities=8% Similarity=-0.134 Sum_probs=43.8
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
+-..+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+........ +...+..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3344444555555555555544443 224444444555555555555555555555544321 44444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 045498 161 IMEADKLLVQMKE 173 (207)
Q Consensus 161 ~~~a~~~~~~m~~ 173 (207)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 68
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.79 E-value=1.3e-08 Score=49.23 Aligned_cols=33 Identities=45% Similarity=0.945 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 74 (207)
+|+++|++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.78 E-value=7.2e-06 Score=60.09 Aligned_cols=131 Identities=16% Similarity=-0.073 Sum_probs=104.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
...|..+-..+.+.|++++|...|++..+.. +.+...|+.+-..+...|++++|...|++..+.... +..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4557778888999999999999999998875 456789999999999999999999999999876533 56778888888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+...|++++|.+.++...+.. |+..............+++++|...|+.....
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999999999999998864 43322222223345677899999999775543
No 70
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.78 E-value=1.7e-08 Score=48.79 Aligned_cols=33 Identities=55% Similarity=0.870 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 179 (207)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666555
No 71
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=5e-06 Score=67.21 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=113.0
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
.+....++..+-.|.....+.|.+++|..+++...+.. |-+......+..++.+.+++++|....++....... +...
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 44556667888888888888889999999888888763 334556777778888888899988888888877533 5667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (207)
...+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+...+. ..|....|+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 77777888888999999999988887433 24778888888888889999998888888765 2333344433
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.8e-06 Score=63.81 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=109.8
Q ss_pred hhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHH
Q 045498 23 CKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96 (207)
Q Consensus 23 ~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 96 (207)
...|++++|+ -.++ ..+..+..-+.+.|-...++..|++++.+.... ++.|+.+.+-|-..|-+.|+-..|++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence 3455666665 2222 234445555555666666666666666655443 45667777777777777777777776
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcC
Q 045498 97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 97 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~ 175 (207)
.+-+--+. ++-+..+..-+...|....-++++...|++..- +.|+..-|..++..| .+.|++.+|.++|++....
T Consensus 614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk- 689 (840)
T KOG2003|consen 614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK- 689 (840)
T ss_pred hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-
Confidence 65443332 344666666666677777777777777776544 367888888777444 5678888888888887765
Q ss_pred CCCChhhHHHHHHHHHhcCc
Q 045498 176 CFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 176 ~~p~~~~~~~l~~~~~~~~~ 195 (207)
++-|......|++.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 66677788888887777763
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=2.8e-06 Score=68.66 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=115.0
Q ss_pred CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 71 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
.+.+...+..|..+..+.|..++|..+++...+.... +......+..++.+.+++++|...+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4556788888999999999999999999999987422 5677888899999999999999999999998544 5667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999999999999999999842 335789999999999999999999999875
No 74
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.75 E-value=2.1e-08 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 73 (207)
.+|+.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.4e-06 Score=56.75 Aligned_cols=106 Identities=12% Similarity=-0.108 Sum_probs=90.1
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
+..+..++..+..+...+.+.|++++|...|++..... +.+...|..+-.++...|++++|...|+...+.. +.+...
T Consensus 17 ~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a 94 (144)
T PRK15359 17 KQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEP 94 (144)
T ss_pred HHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence 44444455556677888899999999999999998875 5677889999999999999999999999999875 447888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
+..+..++.+.|++++|...|+...+..
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998874
No 76
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.72 E-value=3.4e-08 Score=47.41 Aligned_cols=33 Identities=39% Similarity=0.475 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
No 77
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.72 E-value=5.5e-07 Score=68.07 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=107.1
Q ss_pred CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498 69 QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146 (207)
Q Consensus 69 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 146 (207)
.+.+.+......+++.+....+.+.+..++.++.... ...-..|.+++++.|.+.|..+.+..+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4456677888889999999999999999999887662 22234567899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
+++.|+..+.+.|++..|.++...|..++.-.++.|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999887777777777777766554
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=6.9e-06 Score=58.08 Aligned_cols=162 Identities=13% Similarity=0.021 Sum_probs=117.8
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-c---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh---hH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-D---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV---TY 78 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~ 78 (207)
....+-.....+.+.|++++|. -....| + ..++..+..++.+.|++++|+..++++.+... .+.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 3456777778888999999988 112222 2 24677788899999999999999999987642 1222 34
Q ss_pred HHHHhhHhhh--------cChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcCCCHHHHHHHH
Q 045498 79 NPLIHDNWEK--------QGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 79 ~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~~ 133 (207)
..+-.++... |+.+.|.+.++...+.... +.... ..+...+.+.|++++|...+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4444445443 7888999999998876432 22111 13456678899999999999
Q ss_pred HHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 134 DQLSEKGLV-P-GVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 134 ~~~~~~g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+...+.... | ....+..+..++...|++++|..+++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 998876321 2 3568889999999999999999999988765
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=3e-06 Score=58.94 Aligned_cols=135 Identities=14% Similarity=-0.067 Sum_probs=115.6
Q ss_pred CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
.+.+....+.......+.|++..|...|.+..... ++|..+|+.+--+|.+.|++++|..-|.+..+... -+....+.
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nN 173 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANN 173 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhh
Confidence 34455566778999999999999999999998765 78999999999999999999999999999887643 35678889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+.-.+.-.|+++.|..++......+.. |...-..+.......|++++|.++...-..
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 999999999999999999999887644 777888889999999999999998775443
No 80
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=7.1e-07 Score=72.08 Aligned_cols=170 Identities=16% Similarity=0.051 Sum_probs=132.7
Q ss_pred cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhHhh------------hcChhhHHHHHHH
Q 045498 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWE------------KQGRFSAMALLQT 100 (207)
Q Consensus 34 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~ 100 (207)
.....|+..++.+-..+.+..+|..|.+-|+...+.- ..+|+.+.-.|-+.|.. .+..++|+++|.+
T Consensus 558 ~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 558 NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4445567777778888889999999988777766532 23465555555554432 3345679999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC
Q 045498 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPD 179 (207)
Q Consensus 101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 179 (207)
..+.. +.|...-|.+--.++..|++..|..+|.+..+.... ...+|-.+..+|...|++..|.++|+...+. .-..+
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88876 347888888889999999999999999999987542 5678999999999999999999999986654 44567
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 180 STSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
......|.+++-+.|.+.+|.+....
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88899999999999999999887654
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=3.3e-06 Score=54.30 Aligned_cols=96 Identities=17% Similarity=0.004 Sum_probs=57.5
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
....+...+...|++++|.+.++.....+ +.+...+..+...+.+.|+++.|...++...+.+.. +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 34444555566666666666666665544 225556666666666666666666666666555322 4555555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 045498 157 KKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~ 174 (207)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 82
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=3.5e-06 Score=55.02 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=77.8
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV--VTYNILI 152 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li 152 (207)
.|..++..+ ..++...+...++.+.+..... .....-.+...+...|++++|...|+........|+. ...-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3666677777777766653221 1223333446677777888888888777776533322 2334456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
..+...|++++|...++..... ......+......+.+.|++++|...|++.|
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777778888888777654332 2344556667777778888888888777653
No 83
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.67 E-value=7.5e-07 Score=54.01 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKG--------MIMEADKLLVQMKEKGCFPDSTSFNT 185 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (207)
.-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 777777777777766542 23456777788887778888888888
Q ss_pred HHHHHHh
Q 045498 186 VIQGFLV 192 (207)
Q Consensus 186 l~~~~~~ 192 (207)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=6.8e-06 Score=61.84 Aligned_cols=151 Identities=13% Similarity=0.035 Sum_probs=111.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
+-..|+.++|++.|-++..- +..+..+.-.+.+.|-...+...|++++.+.... ++.|..+.+.+...|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 44567777777777666432 1224455666666777777777777777655443 455678888888999999998888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCchhHHHHHHHh
Q 045498 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF-LVKNETDRASSFLKK 205 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 205 (207)
++.+-.--+. ++.+..+...|...|....-++++...|++..- ++|+..-|..++..| .+.|++.+|..++++
T Consensus 612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8876544333 345788888888999999899999999987654 689999999988755 678999999999875
No 85
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.66 E-value=3.2e-06 Score=63.64 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 122 (207)
...|+..+...++++.|+.+|+++.+.. |+ ....+.+.+...++-.+|.+++.+..+.. +-+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4445555556677777777777777664 33 33446666666666677777777766543 2355555556666777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.++++.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 77777777777777776322 4557777777777777777777777655
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.3e-06 Score=68.67 Aligned_cols=181 Identities=12% Similarity=-0.040 Sum_probs=115.1
Q ss_pred HHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498 16 GIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 90 (207)
..+|.+|+..|+.++|. ...-+|++..|..+.+......-+++|.++++....+ .-..+-....+.++
T Consensus 428 ~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 428 DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence 33444444444444443 2223445555555555544444455555554443221 00111111223556
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
++++.+.++.-.+.. +.-..+|...-.+..+.++++.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+.+
T Consensus 501 fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 501 FSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 666666665544433 234567777777778888999999999888876433 577899999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 171 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+.+ .-+...|..-+....+.|.+++|.+.+.++
T Consensus 579 AlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 579 ALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88877 446667777888888999999999888765
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=4.6e-06 Score=62.82 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=99.7
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
-..|++.+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+... -+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 4456677777899999999999999875 44 344577888888899999999998887633 266677777788999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 158 KGMIMEADKLLVQMKEKGCFPDS-TSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.++++.|..+.+++.+. .|+. .+|..|..+|.+.|+++.|+..++-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999999886 5554 6999999999999999999988764
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.61 E-value=3.9e-05 Score=56.59 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=130.2
Q ss_pred hhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHH
Q 045498 25 IREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98 (207)
Q Consensus 25 ~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 98 (207)
.|+|.+|+ ...-+-....|-.-..+.-+.|+.+.+-.++.+..+.--.++....-+.-......|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777 122222344566667778888999999999999887644556667777778888889999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 99 QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV-------VTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 99 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
+++.+.+.. +..+......+|.+.|+|.....+...+.+.|.--+. .+|..++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 998887643 6778889999999999999999999999988765443 34566666555555555555555554
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 172 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-.. .+-++..-.+++.-+.+.|+.++|.++.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 332 3445666677777888888888888877653
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=1.1e-05 Score=67.92 Aligned_cols=192 Identities=13% Similarity=0.044 Sum_probs=136.1
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCc-----cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICL-----DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
+...|-..|......+++++|. -..+.+ -...|.++++.-.--|.-+...++|++..+.. -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3457888888888889988888 122211 12457777777666777778888888887753 2235678
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhc
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK 158 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~ 158 (207)
.|...|.+.+..++|-++++.|.+.- .-...+|...+..+.+.++-+.|..++.+..+.=.+ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88888888888889999998887652 246678888888888888888888888877665211 1233444455555677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|+.+.+..+|+...... +--...|+..++.=.++|+.+.++.+|++.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888888888877652 223456888888888888888888888764
No 90
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=4.6e-05 Score=53.50 Aligned_cols=153 Identities=14% Similarity=0.005 Sum_probs=94.3
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
......+......-...|.+.+++++|++..... . +......=..++.+..+.+-|...+++|.+-. +..|
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~t 171 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDAT 171 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHH
Confidence 3333444344444455667777788777776551 1 12222333344566777777777777777653 4455
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 113 YSLVIDGLC----RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 113 ~~~li~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
.+.+..++. -.+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...... -++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHH
Confidence 554544443 345577788888887764 456777777777777888888888888887776632 35566666666
Q ss_pred HHHhcCch
Q 045498 189 GFLVKNET 196 (207)
Q Consensus 189 ~~~~~~~~ 196 (207)
+-...|..
T Consensus 250 ~a~~~Gkd 257 (299)
T KOG3081|consen 250 LALHLGKD 257 (299)
T ss_pred HHHHhCCC
Confidence 55555544
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=8.3e-06 Score=52.42 Aligned_cols=107 Identities=19% Similarity=0.055 Sum_probs=89.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+......+...+.+.|++++|...|+.....+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556777788889999999999999998865 5577888889999999999999999999988775 446778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 149 (207)
.+...|++++|...++...+.. |+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 9999999999999999998873 5544443
No 92
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.55 E-value=2.1e-06 Score=52.15 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=42.6
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVG--------RWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.|..|...+++.....+|..+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544331 233455566666666666666666666
Q ss_pred HHHHH
Q 045498 152 INGLC 156 (207)
Q Consensus 152 i~~~~ 156 (207)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 66554
No 93
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=2.5e-05 Score=63.04 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=117.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC--cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGIT--AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
++.+.+..+....+...+....+. -+...|..+..++...|++.+|..++..+......-+..+|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 334444444444455555555533 345678888899999999999999999998876555678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK--------EKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+.|.+.|+......+. +...-..|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999887433 56666777888899999999999999853 23456666667777777888888887
Q ss_pred HHHHHHhh
Q 045498 199 ASSFLKKN 206 (207)
Q Consensus 199 a~~~~~~m 206 (207)
-...-.+|
T Consensus 545 fi~t~~~L 552 (895)
T KOG2076|consen 545 FINTASTL 552 (895)
T ss_pred HHHHHHHH
Confidence 65554443
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.52 E-value=3.9e-05 Score=60.07 Aligned_cols=162 Identities=16% Similarity=0.091 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--------------CCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ--------------GITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDK 105 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 105 (207)
+|+.+-..|....+..-..+++...... .-+|+. .++..+-..|...|+.++|+..+++..+..
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht 224 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT 224 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 4666666666555666666666665432 113444 345666788889999999999999988874
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---
Q 045498 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS--- 182 (207)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--- 182 (207)
+..+..|..-.+.+-+.|++++|.+.++..++.... |...-+-.+..+.+.|++++|.+++...-+.+..|-...
T Consensus 225 -Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 225 -PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 224778888899999999999999999999998765 788888889999999999999999999987765443322
Q ss_pred ---H--HHHHHHHHhcCchhHHHHHHHh
Q 045498 183 ---F--NTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 183 ---~--~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
| .....+|.+.|++..|++.|..
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 3456688999999999887764
No 95
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.52 E-value=1.5e-07 Score=44.05 Aligned_cols=30 Identities=47% Similarity=0.946 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGI 71 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 71 (207)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 96
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=2.7e-05 Score=50.78 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH--HHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--EVYS 114 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 114 (207)
...|..++..+ ..++...+...++.+.+.. +.+. ...-.+-..+...|++++|...|+........|+. ....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45677777777 4889999999999998864 2231 22333447788899999999999999887633332 3445
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+...+...|++++|...++...... .....+...-..|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56788899999999999997754432 34456667789999999999999999863
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=0.0001 Score=55.94 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=76.6
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIM 162 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~ 162 (207)
.....|+.++|+..++.+.+.- +-|..........+.+.|+.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 4455677777777777766552 224444445566777777777777777777766 344 444555667777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+|..++++.... .+-|+..|..|.++|...|+..++..-..|
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 777777776655 344667777777777777777666654443
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5.3e-05 Score=52.83 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=115.7
Q ss_pred HcC-CCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH
Q 045498 33 KKG-ICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI 110 (207)
Q Consensus 33 ~~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 110 (207)
..| ..++.++ |..++-+....++.+.|..+++++..+- +-+..+-..--..+-..|++++|.++++.+.+.+ +.|.
T Consensus 43 k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~ 120 (289)
T KOG3060|consen 43 KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDT 120 (289)
T ss_pred hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchh
Confidence 344 5566544 6677777888899999999999887663 3333332222223456788899999999988876 4466
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
.++--=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. +.++..+..+...+
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 66766666666677766777776666655 34588899999999999999999999999887651 33555566666654
Q ss_pred HhcC---chhHHHHHHHhh
Q 045498 191 LVKN---ETDRASSFLKKN 206 (207)
Q Consensus 191 ~~~~---~~~~a~~~~~~m 206 (207)
--.| +.+-+.+++.+.
T Consensus 199 Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3333 445566666543
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.49 E-value=0.00018 Score=54.04 Aligned_cols=164 Identities=11% Similarity=-0.009 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-Ccc--HHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELN--IEVYSLVID 118 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~ 118 (207)
....+...+...|++++|...+++..+.. +.+...+..+-.++...|++++|...+++...... .|+ ...|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33445556777888888888888887764 44556677777788888888888888887665432 122 234556777
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--HHHHHHcCC--CCChhhHHHHHHHH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGL-VPGVVTY-N--ILINGLCKKGMIMEADKL--LVQMKEKGC--FPDSTSFNTVIQGF 190 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~l~~~~ 190 (207)
.+...|++++|..++++...... .+..... + .++.-+...|....+... ......... ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 78888888888888887754322 1111111 1 223333334433333222 111111110 11112223456667
Q ss_pred HhcCchhHHHHHHHhh
Q 045498 191 LVKNETDRASSFLKKN 206 (207)
Q Consensus 191 ~~~~~~~~a~~~~~~m 206 (207)
...|+.++|.+.++.+
T Consensus 275 ~~~~~~~~a~~~L~~l 290 (355)
T cd05804 275 AGAGDKDALDKLLAAL 290 (355)
T ss_pred hcCCCHHHHHHHHHHH
Confidence 7788888888777653
No 100
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.8e-05 Score=59.97 Aligned_cols=154 Identities=16% Similarity=0.052 Sum_probs=125.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
+.-.|+...|..-|+...+....++ ..|--+-.+|....+.++....|.+....+.. +..+|..--..+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3346888889999999888754333 23555566788899999999999998887644 778898888888889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
..=|++..+.... +...|..+..+..+.++++++...|++.++. ++--+..|+.....+...+++++|.+.|+..+
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999987543 5667777777778899999999999999877 66677889999999999999999999988653
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.47 E-value=0.00018 Score=58.36 Aligned_cols=197 Identities=12% Similarity=0.003 Sum_probs=142.2
Q ss_pred cccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498 8 FKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL 81 (207)
Q Consensus 8 ~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 81 (207)
+.|.....-...+...-.|++++|. -.-.+.+...|.+|-..|-+.|+.+++...+-.....+ +-|...|-.+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 4444444444444444459999888 23345567889999999999999999888776655443 4466778888
Q ss_pred HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHh
Q 045498 82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN----ILINGLCK 157 (207)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~ 157 (207)
-......|+++.|.-.|.+..+.. +++...+.--...|-+.|+...|.+.|.++.......|..-+. ..+..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 888888899999999999988876 4566677777888899999999999999988874322333333 33455666
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 158 KGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.++-+.|.+.++..... +-..+...++.++..|.+...++.+...+.++
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 77778888888877652 23446677888888888888888888776543
No 102
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.47 E-value=2.2e-05 Score=57.04 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=104.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh-HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|-..... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998653 2233334333333 33356777799999998776 45678889999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGV----VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 187 (207)
+.+.|+.+.|..+|++.... + |.. ..|...+..-.+.|+++.+.++.+++.+. -|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99999999999999999876 3 333 48999999999999999999999999876 34434444333
No 103
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.7e-05 Score=57.83 Aligned_cols=194 Identities=12% Similarity=-0.033 Sum_probs=104.4
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
+....+..-|.++...|+-.+.. -...+..+.+|-++-.-|...|+.++|.+.|.+....+-.-. ..|-..-+
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-paWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhH
Confidence 34444455555555555544433 333344555666666666666666666666665432211100 11222222
Q ss_pred h----------------------------------HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 84 D----------------------------------NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 84 ~----------------------------------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
+ |.+.++.+.|.+.|.+..... +.|+.+.+-+--.....+.+.+|
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence 2 233444445555554444332 22444555554444555666677
Q ss_pred HHHHHHHHhC----CC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 130 RKKLDQLSEK----GL-V-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 130 ~~~~~~~~~~----g~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
...|+..... +- + .-..+++.|-.+|.+.+.+++|...++..... .+-|..++.++.-.|...|.++.|...|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 6666655411 00 0 13345667777777777777777777776665 2446677777777777777777777777
Q ss_pred Hhh
Q 045498 204 KKN 206 (207)
Q Consensus 204 ~~m 206 (207)
.+.
T Consensus 513 hKa 515 (611)
T KOG1173|consen 513 HKA 515 (611)
T ss_pred HHH
Confidence 654
No 104
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.46 E-value=3.1e-07 Score=42.92 Aligned_cols=29 Identities=48% Similarity=0.820 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44455555555555555555555544443
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.5e-05 Score=54.72 Aligned_cols=155 Identities=17% Similarity=0.061 Sum_probs=116.9
Q ss_pred hhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh---
Q 045498 13 HVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW--- 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--- 86 (207)
.....-...|++.|++++|+ ..+ -+......=+..+.+..+++.|.+.+++|.+-. +..|.+.|..++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA 183 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence 33344456788999999999 333 344444445566778899999999999998764 5567776665554
Q ss_pred -hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHH
Q 045498 87 -EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEA 164 (207)
Q Consensus 87 -~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a 164 (207)
..+...+|.-+|++|-+. .+|+..+.+....++...|++++|..+++....+..+ ++.+...++.+-...|.. +-.
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 455688899999999875 4789999999999999999999999999999998766 677777676666666655 555
Q ss_pred HHHHHHHHHc
Q 045498 165 DKLLVQMKEK 174 (207)
Q Consensus 165 ~~~~~~m~~~ 174 (207)
.+.+.+++..
T Consensus 262 ~r~l~QLk~~ 271 (299)
T KOG3081|consen 262 ERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhc
Confidence 6677777765
No 106
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.44 E-value=0.00028 Score=55.74 Aligned_cols=161 Identities=12% Similarity=-0.032 Sum_probs=115.3
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+...|......=-..|..++...+|++.... ++-....|-...+.....|+...|..++....+.... +...|-..+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4445555555555567777778888887765 3455566777777777888888888888887776533 6778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
....+.+++.|..+|.+.... .|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+-+.+-+.++++.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHH
Confidence 888888888888888887775 567777776666666678888888888877765 33334556666667777777777
Q ss_pred HHHHHH
Q 045498 199 ASSFLK 204 (207)
Q Consensus 199 a~~~~~ 204 (207)
|.+.|.
T Consensus 704 aR~aY~ 709 (913)
T KOG0495|consen 704 AREAYL 709 (913)
T ss_pred HHHHHH
Confidence 776553
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.6e-05 Score=57.53 Aligned_cols=141 Identities=12% Similarity=0.007 Sum_probs=113.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CC--CccHHHHHHHHHHHhc
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KY--ELNIEVYSLVIDGLCR 122 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~~~~~~~~~li~~~~~ 122 (207)
-|.+.+.++.|.+.|.+..... |-|+...+-+--.....+.+.+|..+|+..... +. ..-..+++.+-.+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 4556788888888888887663 668888888888888899999999999886522 11 1134578889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
.+.+++|...+++......+ +..++.++.-.|...|+++.|.+.|..... +.|+..+...++..+...
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 99999999999999887654 889999999999999999999999997765 478887777777755443
No 108
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.41 E-value=1.1e-05 Score=55.01 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCccHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----------------Chhh
Q 045498 35 GICLDVFVYSSLINGLCTF-----NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----------------GRFS 93 (207)
Q Consensus 35 ~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~ 93 (207)
+-..+..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+.. +-+.
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 3456677777777777654 566777777777777777777777777777654311 1233
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
|++++++|...|+-||..++..++..|++.+.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 45555555555555555555555555554443
No 109
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.40 E-value=2e-05 Score=53.77 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=82.8
Q ss_pred CcchhhHHHHHhhHhh-----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----------------CHHHHH
Q 045498 72 TAELVTYNPLIHDNWE-----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----------------RWEEAR 130 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~ 130 (207)
..+..+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577888888888875 4677778888999999999999999999999987532 345789
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045498 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKE 173 (207)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 173 (207)
+++++|...|+.||..++..++..+++.+.. .+..++.-.|-+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765 345555555543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=0.00012 Score=61.97 Aligned_cols=181 Identities=14% Similarity=0.023 Sum_probs=135.2
Q ss_pred HHHHHhhhhhhhHHHHHH--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498 16 GIRINGMCKIREIDSAIK--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 93 (207)
-.+-.+|.....+.+..+ ..+.-...+|..|...|.+..++++|.++++.|.+. +......|...+..+.+..+-+.
T Consensus 1504 lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHH
Confidence 334445554434444432 222333567899999999999999999999999875 23577899999999999999999
Q ss_pred HHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 94 AMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 94 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
|..++.+..+.-.+- ........+..-.+.|+.+.+..+|+.....-++ -...|+..+..-.+.|+.+.+..+|++..
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999977663221 3445566667778999999999999999887554 67799999999999999999999999999
Q ss_pred HcCCCCCh--hhHHHHHHHHHhcCchhH
Q 045498 173 EKGCFPDS--TSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 173 ~~~~~p~~--~~~~~l~~~~~~~~~~~~ 198 (207)
..++.|-. ..|.--+..=-+.|+-..
T Consensus 1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99877654 334444444344555443
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00016 Score=54.00 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=123.5
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH----------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI----------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT 72 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~----------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 72 (207)
|..-.+.|...+....+.+++..-..+.+. ....+-|++....+..++...|+..+|+..|++....+
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-- 262 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-- 262 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--
Confidence 334445566666666666666543333222 56667788999999999999999999999999886543
Q ss_pred cch-hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 73 AEL-VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 73 ~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
|+. ......--.+.+.|+.+....+...+.... +-+...|-.-...+....+++.|..+.++.++.... +...|-.=
T Consensus 263 py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilK 340 (564)
T KOG1174|consen 263 PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILK 340 (564)
T ss_pred hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhc
Confidence 222 111122223466777777777777665542 223334444444555566777777777777665332 34444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
-..+.+.++.++|.-.|+..+... +-+...|.-|+.+|...|.+.+|.-.-+
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 466667778888877777766541 2356778888888888888777765443
No 112
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.35 E-value=0.00029 Score=57.71 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=120.6
Q ss_pred chhhhHHHHHhhhhhhhHHHHH---HcCC------CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI---KKGI------CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYN 79 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~---~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 79 (207)
|+...+.|-+.|.-.|++..+. ...+ ..-+.+|--+-.+|-..|++++|...|.+..+.. ++. ..+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence 4455666677777777777666 1111 1123456667777777888888888877766543 332 2344
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----RWEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
-|-..+.+.|+.+.+...|+...+.. +-+..+...+-..|+..+ ..+.|..++....+.-+ -|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence 46677777888888888777776653 324455555555555543 45666666666665532 2566676666666
Q ss_pred HhcCCHHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 156 CKKGMIMEADKLLVQMK----EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-.. ++..++.+|.... ..+..+-+...+.+.......|++++|...|++.
T Consensus 425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 544 3444466665443 4555677788888888888889999888888764
No 113
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.35 E-value=2.5e-05 Score=46.11 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498 44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 123 (207)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334444555555555555555554432 2222344444445555555555555555544432 11223444444455555
Q ss_pred CCHHHHHHHHHHHH
Q 045498 124 GRWEEARKKLDQLS 137 (207)
Q Consensus 124 ~~~~~a~~~~~~~~ 137 (207)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555554443
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1.8e-06 Score=50.79 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHH
Q 045498 123 VGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS 201 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 201 (207)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+. .+......+.+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665331 1333444456666677777777777666 22211 122344445666667777777776
Q ss_pred HHHh
Q 045498 202 FLKK 205 (207)
Q Consensus 202 ~~~~ 205 (207)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=1.8e-05 Score=46.79 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=49.9
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++........ +...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334445555666666666666655443 223344555555555566666666666655554322 334555555555566
Q ss_pred CCHHHHHHHHHHHHH
Q 045498 159 GMIMEADKLLVQMKE 173 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~ 173 (207)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666665555443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00034 Score=51.73 Aligned_cols=148 Identities=7% Similarity=-0.039 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
++..+-..+...++.++|+.+..+..+.. +-+..+|+..-.++...+ ..++++..++++.+...+ +..+|+..-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 34445555666778889999998888764 334445555555555556 568888888888877644 555666555455
Q ss_pred hcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 121 CRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 121 ~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
.+.|+ .+++..+++.+.+...+ +..+|+....++.+.|+++++++.++++.+.+.. |..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 55555 36778888888887655 7888888888888888899999999998887644 556676666555544
No 117
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.32 E-value=0.00041 Score=54.82 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=70.3
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC-------------
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------------- 105 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------- 105 (207)
+...|-+-+..-....+++.|..+|.+.... .|+..+|.--++.-...++.++|.+++++-.+.-
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 4445555555555556666666666555443 3444444444444444455555555554433321
Q ss_pred -------------------CCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 106 -------------------YEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 106 -------------------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
.-| .+..|-.+.+.=-+.|.+-.|..+++..+-++++ +...|-..|+.-.+.|+.+.|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence 112 2233444444445556666666666666655544 5666667777777777777666
Q ss_pred HHHHHHH
Q 045498 166 KLLVQMK 172 (207)
Q Consensus 166 ~~~~~m~ 172 (207)
.+..+..
T Consensus 774 ~lmakAL 780 (913)
T KOG0495|consen 774 LLMAKAL 780 (913)
T ss_pred HHHHHHH
Confidence 6665544
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00014 Score=56.25 Aligned_cols=111 Identities=12% Similarity=-0.029 Sum_probs=86.4
Q ss_pred hHHHHHHHHH-hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 93 SAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 93 ~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+.++|-++. ..+.++|..+...|--.|--.|++++|.+.|+......+. |...||-|-..+++..+.++|...|.+.
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3444444433 2333466777777777788889999999999999987554 7889999999999999999999999999
Q ss_pred HHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 172 KEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 172 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++. .|+ +.+...|.-+|...|.+++|.+.|=+.
T Consensus 491 LqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 491 LQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred Hhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 886 454 466777888899999999999887543
No 119
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=3.4e-05 Score=48.17 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=76.5
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--GVVTYNIL 151 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 151 (207)
.++..+...+...|++++|...+..+.+.... .....+..+..++.+.|+++.|.+.++.+....... ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566777788899999999999998765321 124566778888999999999999999888763221 24567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 045498 152 INGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88888999999999999998887
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00016 Score=59.86 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=62.9
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH---
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN--- 153 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--- 153 (207)
.+..+..+|-+.|+.+++..+|++..+.. +-|..+.|.+...|+.. ++++|.+++.+....-+ +..-|+.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~ 193 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHH
Confidence 34444455555566666666666666655 22555666666666655 66666666555544311 1111111111
Q ss_pred HHH--hcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 154 GLC--KKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 154 ~~~--~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-++ ...+.+.-..+.+.+... |..--..++..+...|...++|+++..+++..
T Consensus 194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 111 112222333333333322 22223345555667777888888888888764
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00011 Score=60.69 Aligned_cols=142 Identities=9% Similarity=-0.013 Sum_probs=95.3
Q ss_pred hHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHH-------
Q 045498 27 EIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMAL------- 97 (207)
Q Consensus 27 ~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~------- 97 (207)
.|.+|--..+.| +...+..|+..+...+++++|.++.+...+. .|+.. .|-.+-..+...++...+..+
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~ 94 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFS 94 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcc
Confidence 333343344444 5677889999999999999999999876655 34332 222222244444444443333
Q ss_pred -----------HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 98 -----------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 98 -----------~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
...+...+ -+...+..+..+|-+.|+.+++..+|+++.+..+. |..+.|.+...|... ++++|.+
T Consensus 95 ~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHH
Confidence 22333221 13356677788888889999999999999988744 788889999888888 8899888
Q ss_pred HHHHHHHc
Q 045498 167 LLVQMKEK 174 (207)
Q Consensus 167 ~~~~m~~~ 174 (207)
++......
T Consensus 171 m~~KAV~~ 178 (906)
T PRK14720 171 YLKKAIYR 178 (906)
T ss_pred HHHHHHHH
Confidence 88877654
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=0.00013 Score=45.48 Aligned_cols=101 Identities=12% Similarity=0.005 Sum_probs=77.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLV 116 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l 116 (207)
.++..+...+.+.|++++|.+.|+++.+... +.....+..+..++...|+++.|...++.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777788889999999999999876531 111345666888899999999999999988765322 124567778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGL 141 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~ 141 (207)
..++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888899999999999999888743
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.25 E-value=0.00019 Score=46.81 Aligned_cols=94 Identities=12% Similarity=-0.066 Sum_probs=60.9
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
-.+-.-+...|++++|..+|+.+...+.. +..-|..|-.++-..|++++|...|.......+. |...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 33444456667777777777766665422 4555666666666777777777777776666543 566666667777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 045498 159 GMIMEADKLLVQMKEK 174 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~ 174 (207)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777766554
No 124
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=0.00015 Score=55.15 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=82.6
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+...|-.-+.+=.+..++..|..+|++....=...| ..|--.+..=-..|+...|.++|++-.+ ..|+...|++.|+
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIK 182 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 344444445555555555555555555554311111 2233333333445566666666655433 3566666666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCch
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-G-CFPDSTSFNTVIQGFLVKNET 196 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~~~~ 196 (207)
.=.+-+.++.|..+++...-. .|++.+|--....-.++|+...+..+|+...+. | -.-+...|.+....=.++..+
T Consensus 183 fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 356666666666666666666666666665543 1 001122233333333344555
Q ss_pred hHHHHHHH
Q 045498 197 DRASSFLK 204 (207)
Q Consensus 197 ~~a~~~~~ 204 (207)
++|.-+++
T Consensus 261 ERar~iyk 268 (677)
T KOG1915|consen 261 ERARFIYK 268 (677)
T ss_pred HHHHHHHH
Confidence 55555554
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=6.4e-06 Score=48.38 Aligned_cols=79 Identities=20% Similarity=0.073 Sum_probs=33.0
Q ss_pred cChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555554444321 1223333345555555555555555544 111111 222222334455555555555555
Q ss_pred HH
Q 045498 168 LV 169 (207)
Q Consensus 168 ~~ 169 (207)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 126
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00095 Score=49.42 Aligned_cols=188 Identities=11% Similarity=0.029 Sum_probs=111.2
Q ss_pred hhHHHHHhhhhhhhHHHHH---HcCC--Cc-cHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 14 VYGIRINGMCKIREIDSAI---KKGI--CL-DVFVYSSLINGLCTFN-RLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~---~~~~--~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
+++.+-..+...+..++|+ ...+ .| +..+|+..-.++...+ ++++++..++++.+.+ +-+..+|+..-..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3444445555566667776 2222 22 2334444444455555 5788888888887764 334455665544455
Q ss_pred hhcCh--hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCH
Q 045498 87 EKQGR--FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK---GMI 161 (207)
Q Consensus 87 ~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~ 161 (207)
+.+.. +++..+++++.+...+ +..+|+...-++.+.|+++++++.++++.+.++. |...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 5667777777776543 6777887777777888888888888888877655 666666665555443 222
Q ss_pred ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchhHHHHHHHh
Q 045498 162 ----MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK----NETDRASSFLKK 205 (207)
Q Consensus 162 ----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~ 205 (207)
++............ +-|..+|+-+...+... +...+|.+++.+
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 34555555555442 23556666666666552 233445555443
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00019 Score=51.50 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=112.5
Q ss_pred ccccccccchhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh
Q 045498 3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV 76 (207)
Q Consensus 3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 76 (207)
|..+|+..-.--+.+.+..+.+..+++.++ ...-.| +....+.|-.+|....++..|-..++++-.. .|...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence 344566655566788888888999999888 222333 7778888999999999999999999999765 34444
Q ss_pred hHHHH-HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 77 TYNPL-IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 77 ~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
-|... ...+.+.+.+..|+++...|.... ..-......-....-..+++..+..++++....| +..+.+......
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 44332 245667777888888887776431 1011111111112233455555555555554322 333333333444
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 156 CKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.+.|+++.|.+-|+...+- |..| ..+|+.-+..| +.|+++.|+++..+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSE 203 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISE 203 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 4566666666666655543 3332 23444433333 44555566555544
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00046 Score=52.52 Aligned_cols=121 Identities=14% Similarity=0.017 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHH
Q 045498 50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~ 128 (207)
+...|++++|+..++.+.+.. |-|+..+......+.+.++.++|.+.++.+.... |+ ....-.+-.+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 446789999999999988763 4556666777789999999999999999998864 44 5566777899999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
|..++........ -|...|..|..+|...|+..++.....+....
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999998887754 48899999999999998888877776665543
No 129
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=0.00014 Score=52.91 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=96.8
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
.+|-.+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468889999999999999999999998654 2233444444333 23356777899999998876 44578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 155 LCKKGMIMEADKLLVQMKEKGCFPDS---TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999876 33222 48999999999999999999988765
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=0.00014 Score=47.35 Aligned_cols=96 Identities=11% Similarity=-0.073 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
+......+-.-+...|++++|..+|+.+....+. +..-|-.|--++-..|++++|...|........ -|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 3455666677788999999999999999887554 677788899999999999999999999988763 57888999999
Q ss_pred HHHhcCchhHHHHHHHhh
Q 045498 189 GFLVKNETDRASSFLKKN 206 (207)
Q Consensus 189 ~~~~~~~~~~a~~~~~~m 206 (207)
++...|+.+.|.+.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 999999999999999864
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=0.00061 Score=45.81 Aligned_cols=114 Identities=11% Similarity=-0.065 Sum_probs=60.9
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
.+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344455555556666666666666554332221 245556666666666666666666666654322 34444455555
Q ss_pred HHhcCC--------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 155 LCKKGM--------------IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 155 ~~~~~~--------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+...|+ +++|.+++++.... ++..+..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 555444 45555666555543 33335556666555543
No 132
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00075 Score=50.62 Aligned_cols=158 Identities=20% Similarity=0.103 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH-HHHh
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI-DGLC 121 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~ 121 (207)
|-.--..+...+++++|.-.|+...... |-+...|.-|+.+|...|.+.+|..+-++..+. ++-+..+...+- ..+.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 3333445667788888888888776653 346678888888888888888876666554332 122334444331 2222
Q ss_pred c-CCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 122 R-VGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 122 ~-~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
- -..-++|.++++.-... .|+ ....+.+...+...|..+.+..++++.... .||....+.|.+.+...+.+.+|
T Consensus 415 ~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred cCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHH
Confidence 1 22236777777766654 344 456677778888999999999999987765 68999999999999999999999
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
++.|...
T Consensus 491 m~~y~~A 497 (564)
T KOG1174|consen 491 MEYYYKA 497 (564)
T ss_pred HHHHHHH
Confidence 9888754
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=0.00016 Score=54.42 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=66.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
...+...|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556788888888888887764 3455667777777778888888888888877764 23566677777777888888
Q ss_pred HHHHHHHHHHHhCC
Q 045498 127 EEARKKLDQLSEKG 140 (207)
Q Consensus 127 ~~a~~~~~~~~~~g 140 (207)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888777753
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.14 E-value=0.0002 Score=47.92 Aligned_cols=96 Identities=13% Similarity=-0.117 Sum_probs=65.9
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 152 (207)
...|..+...+...|++++|...+++.......+ ...++..+-..+...|++++|.+.++...+.... ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3456666677777888888888888876553222 2347777888888888888888888888765322 345566666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 045498 153 NGLC-------KKGMIMEADKLLVQM 171 (207)
Q Consensus 153 ~~~~-------~~~~~~~a~~~~~~m 171 (207)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 777877666666544
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0011 Score=46.53 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=105.5
Q ss_pred cccchh-hhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498 8 FKGNFH-VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80 (207)
Q Consensus 8 ~~p~~~-~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 80 (207)
..|+.. .|.-+.-+....|+.+.|. ...++-+..+-..-.-.+-..|++++|+++++.+.+.+ |.|.+++--
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 445553 4555555666667777666 33332222221111112234688888888888888776 666777776
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG- 159 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~- 159 (207)
=+-+.-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++++.-..+. +...+..+...+.-.|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhh
Confidence 666666777777777777776655 4558888888888888888888888888888776322 4444455555544333
Q ss_pred --CHHHHHHHHHHHHHc
Q 045498 160 --MIMEADKLLVQMKEK 174 (207)
Q Consensus 160 --~~~~a~~~~~~m~~~ 174 (207)
+.+-+.+.|.+..+.
T Consensus 204 ~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 204 AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 556677777777765
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=0.00043 Score=46.55 Aligned_cols=86 Identities=9% Similarity=-0.058 Sum_probs=67.3
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 455678888888999999999999999986543222 35788888999999999999999999887642 245666677
Q ss_pred HHHHhcCCC
Q 045498 117 IDGLCRVGR 125 (207)
Q Consensus 117 i~~~~~~~~ 125 (207)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777777766
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.0002 Score=53.87 Aligned_cols=90 Identities=14% Similarity=0.009 Sum_probs=67.0
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
..+...|++++|...|++..+... -+...|..+..+|.+.|++++|...+++..+.... +...|..+..+|.+.|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 445567788888888888777653 35667777777888888888888888888776433 5667777777888888888
Q ss_pred HHHHHHHHHHHc
Q 045498 163 EADKLLVQMKEK 174 (207)
Q Consensus 163 ~a~~~~~~m~~~ 174 (207)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 888888887765
No 138
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.0017 Score=49.71 Aligned_cols=148 Identities=10% Similarity=0.023 Sum_probs=87.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
..+++..|..+|++..... ..+...|--.+..=.++.....|..++++....-.. -...|.-.+-.=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHH
Confidence 4455666666666666543 234444545555555666666666666665554222 22344444445555666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+|+.-.+. .|+...|.+.|..-.+-..++.|..++++..-. .|++.+|---.+.=.+.|.+..|..+++.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 66666554 566666666666666666666666666666543 46666666666666666666666666654
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0018 Score=46.06 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=109.9
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH---HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY---NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
++..+-.....+.+.|++++|.+.|+++.... +-+...- -.+..++.+.+++++|...+++..+....-....+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33334344555567999999999999998864 2223332 3456788999999999999999887754333334433
Q ss_pred HHHHHhc--C---------------CC---HHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHh
Q 045498 116 VIDGLCR--V---------------GR---WEEARKKLDQLSEKGLVPGVVT------------------YNILINGLCK 157 (207)
Q Consensus 116 li~~~~~--~---------------~~---~~~a~~~~~~~~~~g~~~~~~~------------------~~~li~~~~~ 157 (207)
.+.+.+. . .+ ...|.+.|+.+.+. -|+..- --.+...|.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433321 1 12 34566777777665 233211 1234466888
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 158 KGMIMEADKLLVQMKEK--GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.|.+..|..-++.+.+. +.+....+...++.+|...|..++|..+..
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999876 344466778889999999999999988664
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.0013 Score=51.95 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=101.9
Q ss_pred HcCCCccHHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcc-hhhHHHHHhhHhhhc--------ChhhHHHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFN-----RLKEAVELFDKMVAQGITAE-LVTYNPLIHDNWEKQ--------GRFSAMALL 98 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~ 98 (207)
....+.|...|...+.+..... +...|..+|++..+.. |+ ...|..+..++.... +...+.+..
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 5666778899999999865533 3778999999998874 44 334444433332221 122333333
Q ss_pred HHHHhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498 99 QTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177 (207)
Q Consensus 99 ~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (207)
.+.... ....+...|.++.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+++.... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 123355677777666667899999999999999985 68889999999999999999999999998775 5
Q ss_pred CChhhHH
Q 045498 178 PDSTSFN 184 (207)
Q Consensus 178 p~~~~~~ 184 (207)
|...+|.
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 5555543
No 141
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00096 Score=52.03 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred HHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh--hHhhhcC
Q 045498 19 INGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH--DNWEKQG 90 (207)
Q Consensus 19 l~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~ 90 (207)
++.+.+.|++++|. -.+.+-+...+..-+-+..+.++|++|+.+.+.-... ..+ ..|. +=+ +..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~-~~~~-fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI-NSFF-FEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc-chhh-HHHHHHHHHccc
Confidence 45555667777776 2333445566666666777777777777444332110 001 1110 223 3345667
Q ss_pred hhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEADKLL 168 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 168 (207)
.++|+..++ |..+ +..+...-...+-+.|++++|.++|+.+.+.+.. .+...+.+=+. .+---.+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~---- 161 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV---- 161 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH----
Confidence 777777666 2222 2334555556667777777777777777665332 22222221110 0000011
Q ss_pred HHHHHcCCCCChhhHHHHH---HHHHhcCchhHHHHHHHhh
Q 045498 169 VQMKEKGCFPDSTSFNTVI---QGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 169 ~~m~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~m 206 (207)
+.+......| ..+|..+. ..+...|++.+|+++++..
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1122222233 23454444 4556789999999998764
No 142
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00033 Score=55.77 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=140.7
Q ss_pred cccchhhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498 8 FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87 (207)
Q Consensus 8 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 87 (207)
-+||+..|..+.+......-+++|.+-+-..+...-..+-....+.++++++.+.|+.-.+.+ +....+|-.+--+..+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 368889999999999888889999855444444433333334445799999999999887764 4566788888888889
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
.+++..+...|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.+. -+...|...+......|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999998877653 22567899999999999999999999999998874 4777888888888999999999999
Q ss_pred HHHHHHcC-CCCChhhHHHHHHHHHh
Q 045498 168 LVQMKEKG-CFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 168 ~~~m~~~~-~~p~~~~~~~l~~~~~~ 192 (207)
+.++.+.. ..-|......++....+
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99887542 11255555555555443
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=4.9e-05 Score=42.53 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+.|++++|.+.++.+...... +......+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666666666555332 4555555666666666666666666665554
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.0048 Score=47.95 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 56 LKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 56 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
.+.....++++... ...|+ -+|-.+|+...+......|..+|.+..+.+..+ ++.+.++++..+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 45555666666543 33444 567778888888888888888888888877666 6777778887777 45668888888
Q ss_pred HHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 134 DQLSEKGLVPGVVTY-NILINGLCKKGMIMEADKLLVQMKEKGCFPDS--TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+.=.+. -+|...| ...+..+...++-..+..+|++....++.|+. ..|..++.-=..-|+...+.++-+++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 754443 2343333 46677777888888888888888877655544 67888888888888888887776654
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0018 Score=47.28 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcc-hhhHHHHHhhHhhhcChhhHHHHHHHHHh----CCCCcc--
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVA----QGITAE-LVTYNPLIHDNWEKQGRFSAMALLQTLER----DKYELN-- 109 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~-- 109 (207)
..|....+.|...+++++|...|.+... .+-+.+ ...|.....++. ..++++|...+++..+ .| .|+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 4566677777777888888888777642 221111 123444444443 3477777777766542 23 222
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----
Q 045498 110 IEVYSLVIDGLCRV-GRWEEARKKLDQLSEK----GLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCF----- 177 (207)
Q Consensus 110 ~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----- 177 (207)
...+..+...|-.. |+++.|.+.|++..+. | .+. ...+..+...+.+.|++++|.++|++....-..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 34666677777777 8888888888766432 2 111 345667777888888888888888887764322
Q ss_pred CChh-hHHHHHHHHHhcCchhHHHHHHHh
Q 045498 178 PDST-SFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 178 p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
++.. .|...+-++...||.-.|.+.+++
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1221 233344456667888888777765
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00093 Score=44.71 Aligned_cols=112 Identities=12% Similarity=-0.006 Sum_probs=78.1
Q ss_pred hHHHHHHHHH-hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 93 SAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 93 ~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
.+...+..+. ..+..-....+..+...+...|++++|...++........+ ...++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444442 22222235567777888888999999999999998664332 23578889999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHH-------hcCchhHHHHHHHh
Q 045498 170 QMKEKGCFPDSTSFNTVIQGFL-------VKNETDRASSFLKK 205 (207)
Q Consensus 170 ~m~~~~~~p~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 205 (207)
...... +....++..+...+. ..|+++.|...+++
T Consensus 97 ~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 QALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 988752 233455666666666 77888766655543
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0031 Score=49.89 Aligned_cols=134 Identities=12% Similarity=0.011 Sum_probs=94.6
Q ss_pred CCCcchhhHHHHHhhHhhhc-----ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC--------CCHHHHHHHHHHH
Q 045498 70 GITAELVTYNPLIHDNWEKQ-----GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV--------GRWEEARKKLDQL 136 (207)
Q Consensus 70 ~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~ 136 (207)
+.+.+...|...+.+..... +...|..+|++..+.... ....+..+..++... .++..+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44667789999998865533 356799999999887532 344444443333221 1234444555544
Q ss_pred HhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 137 SEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 137 ~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.... ...+...|.++.-.....|++++|...+++..+.+ |+...|..+.+.+...|+.++|.+.+++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3321 23345678877777777899999999999999874 78899999999999999999999999875
No 148
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.85 E-value=0.0011 Score=41.93 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=33.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 045498 141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGF 190 (207)
Q Consensus 141 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~ 190 (207)
..|+..+..+++.+|+..|++..|.++.+...+. +++.+...|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566777777777777777777777777766543 5555666777777644
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=0.00022 Score=39.45 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666666666665422 4555556666666666666666666666543
No 150
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00061 Score=49.02 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=107.6
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----------
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE----------- 107 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----------- 107 (207)
+..+.+..-....+.|+++.|.+-|+...+.+--.+...|+..+ +..+.++.+.|++...++.++|++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 34444455555668899999999999987654344557888777 556678899999999999888742
Q ss_pred --ccH---------------HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 108 --LNI---------------EVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 108 --~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
||+ ..+|.-...+.+.++++.|.+.+-.|.-. ....|++|...+.-.=. .+++.+...-+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLq 300 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQ 300 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHH
Confidence 121 12333334456778888898888887643 23456677666543322 344544444444
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 170 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
-+...+ +....||..++..||+..-++-|..++-+
T Consensus 301 FLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 301 FLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 455442 23457888888888988888888777643
No 151
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0044 Score=43.98 Aligned_cols=133 Identities=16% Similarity=0.043 Sum_probs=101.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH---
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI--- 117 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--- 117 (207)
.+.+.++..+.-.+.+.-...++.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456677777788999999999999998777888999999999999999999999999877654444544444443
Q ss_pred --HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 118 --DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 118 --~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..|.-.+++..|...+.+....... |...-|.=.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455677888899999888876533 5555555444555578999999999999987
No 152
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=0.00013 Score=40.74 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=26.4
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..|++++|..+|++....... +......+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555444322 4444445555555555555555555555544
No 153
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0046 Score=48.22 Aligned_cols=164 Identities=10% Similarity=-0.013 Sum_probs=99.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--------cHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--------NIE 111 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--------~~~ 111 (207)
...|--|-..-...++-..|+..+.+-.+.. +-+....-.|--.|...|.-..|...++.-....++- +..
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 3445555555555555556666666655543 3344445555555555665556666665543332110 000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
.-.. ..+.....+.+..++|-++ ...+.++|......|--.|--.|++++|.+.|+...... +-|...|+.|-..+
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATL 474 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHh
Confidence 0000 1122222333444444433 334444677788888888888999999999999988752 33668899999999
Q ss_pred HhcCchhHHHHHHHhhC
Q 045498 191 LVKNETDRASSFLKKNM 207 (207)
Q Consensus 191 ~~~~~~~~a~~~~~~m~ 207 (207)
+...+.++|+.-|++.+
T Consensus 475 AN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRAL 491 (579)
T ss_pred cCCcccHHHHHHHHHHH
Confidence 99999999999998753
No 154
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.76 E-value=0.011 Score=50.25 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=121.9
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCCC--c-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCc--ch
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGIC--L-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GITA--EL 75 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~ 75 (207)
++..+...+...|++++|. ..+.. + ....+..+...+...|++++|...+.+.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 4455566677789888887 22221 1 2334455556677789999999998887542 1112 23
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHH--HH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hh
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIE--VY--SLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VV 146 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~--~~--~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~ 146 (207)
..+..+.......|+.++|...+.+...... ..... .. ...+..+...|+.+.|.+.+........... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 3444456677788999999998888754211 11110 10 1122445568899999988876554221111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK----GCFPD-STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+..+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1345667888999999999999987653 32222 245667777888999999999988775
No 155
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0035 Score=51.25 Aligned_cols=183 Identities=14% Similarity=0.030 Sum_probs=112.7
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH---------------HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI---------------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA 73 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~---------------~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 73 (207)
-+..+|..+...|.+-.++|-|. +.. ..|+ .+=....-.....|..++|+.+|.+-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 34567888888888877777666 111 1221 22222222345678888888888877653
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------hCC---
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS----------EKG--- 140 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------~~g--- 140 (207)
..|=+.|...|.|++|.++-+.=.+.. -..||......+-..++.+.|++.|++.. ...
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 334556677788888888776433222 23466666666666777777777665421 111
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------C----------CCCChhhHHHHHHHHHhcC
Q 045498 141 ------LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----------G----------CFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 141 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~----------~~p~~~~~~~l~~~~~~~~ 194 (207)
-+.|...|.......-..|+.+.|+.+|...++. | -.-|..+...|.+.|-+.|
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 1223444444444445667888888777766542 1 1236667778889999999
Q ss_pred chhHHHHHHHh
Q 045498 195 ETDRASSFLKK 205 (207)
Q Consensus 195 ~~~~a~~~~~~ 205 (207)
++.+|..+|.+
T Consensus 982 ~v~~Av~FfTr 992 (1416)
T KOG3617|consen 982 DVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHH
Confidence 99999888865
No 156
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.01 Score=50.53 Aligned_cols=193 Identities=11% Similarity=0.021 Sum_probs=119.0
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--c-c
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT--A-E 74 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~ 74 (207)
..+.+...+...|++++|. ..+. .+-..++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3445555667788888876 1111 112344556667788899999999998876542 211 1 1
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhH-
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERD----KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTY- 148 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~- 148 (207)
...+..+-..+...|++++|...+.+.... +.......+..+...+...|+++.|.+.++......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 233445556677789999999988876543 211123344556667788999999999888775421110 11111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 149 ----NILINGLCKKGMIMEADKLLVQMKEKGCFPD---STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 149 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122445568899999998776544211111 111456777888999999999988764
No 157
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.74 E-value=0.00044 Score=45.08 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFN 184 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 184 (207)
.....++..+...|+++.|.+..+.+....+- +...|..+|.+|...|+..+|.+.|+.+.. .|+.|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35667778888899999999999999887543 788999999999999999999999988753 48888887543
No 158
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0038 Score=52.10 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=36.4
Q ss_pred hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
+|..+..+-.+.|.+.+|+++-++. |+..|..++..+.+.|.|++-.+.+...++..-.|. +=+.||-+|++.++..
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHH
Confidence 3444444444445555554333322 344455555555555555555555544443322222 3344555555555544
Q ss_pred h
Q 045498 93 S 93 (207)
Q Consensus 93 ~ 93 (207)
+
T Consensus 1184 e 1184 (1666)
T KOG0985|consen 1184 E 1184 (1666)
T ss_pred H
Confidence 4
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.0028 Score=39.73 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=72.1
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---h-hhHHHHHHH
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---V-VTYNILING 154 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~-~~~~~li~~ 154 (207)
+-.++-..|+.++|..+|++....|.... ...+-.+-+++...|++++|..++++..... |+ . .....+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34567778899999999999888876644 3456667788888999999999998887652 33 1 122223346
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 191 (207)
+...|+.++|...+-..... +...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67889999998888766543 3345555555543
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.72 E-value=0.0012 Score=47.41 Aligned_cols=96 Identities=14% Similarity=0.000 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFNTV 186 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l 186 (207)
..|...+..+.+.|++++|...|+.+.+.-+... ...+..+...|...|++++|...|+.+.+.- -.....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555544566777777777777776532211 2456666777777777777777777776541 11123445555
Q ss_pred HHHHHhcCchhHHHHHHHhh
Q 045498 187 IQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m 206 (207)
...+...|+.++|.+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666777777777777654
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.0091 Score=43.60 Aligned_cols=189 Identities=17% Similarity=0.107 Sum_probs=116.3
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcch-
Q 045498 13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVA----QGITAEL- 75 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~- 75 (207)
..|......|-..|++++|. ..+-+. -...|.....+|.+. ++++|...+++... .| .|+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 45666667777778887776 222222 234455555555444 99999999888753 34 3333
Q ss_pred -hhHHHHHhhHhhh-cChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-----C
Q 045498 76 -VTYNPLIHDNWEK-QGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-----P 143 (207)
Q Consensus 76 -~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~ 143 (207)
.++..+-..|-.. |+++.|.+.|.+..+. +.+ .-...+..+...+.+.|++++|.++|++....-.. .
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3667777788888 8999999999886433 311 12356677888899999999999999998765322 1
Q ss_pred Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--hhhHHHHHHHHHh--cCchhHHHHHH
Q 045498 144 GVV-TYNILINGLCKKGMIMEADKLLVQMKEK--GCFPD--STSFNTVIQGFLV--KNETDRASSFL 203 (207)
Q Consensus 144 ~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~--~~~~~~a~~~~ 203 (207)
+.. .|-..+-++...|++..|.+.+++.... ++..+ ......|+.++-. ...++++..-|
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 222 2333444666789999999999998765 23222 2456667777643 22344444433
No 162
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.69 E-value=0.00073 Score=42.78 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCcchhhHHHHHhhHhhhcChhhHHHHHHHHH-hCCCCccHHHHHHHHHHHh
Q 045498 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 71 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~ 121 (207)
..|+..+..+++.+|+.++++..|.++++.+. ..+++.+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666643 3355555666666665443
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.67 E-value=0.00062 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMK 172 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 172 (207)
.+|..+-..+...|++++|...|++..+.... +...|..+..++.+.| ++++|...++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444455555555555555554444322 3444444444455554 4555555544443
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.012 Score=43.64 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=82.4
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
.+.+..|.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++..++... . -++..|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 355666777778888888888876654 46888999999999999999988876542 1 2557899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 9999999999888771 124566777888888887665
No 165
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.66 E-value=0.0012 Score=53.28 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=65.3
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
+.....+|.+|+.+++.+...... .--|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|+|++
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 444566777788888777655322 224556667788888888888877542 135566777888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
|.++-.+... .......|.+-..-+-..|++.+|.++
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 8777665532 233444454444445555555555544
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00064 Score=48.71 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=76.0
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
-+.+.+++.+|...|.+..+.. +-|.+-|..-..+|.+.|+++.|.+=-+..+..... ...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888888764 236666677788888888888888877777765322 46688888888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
|.+.|+...+. .|+-.+|..=++..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 88888877764 67766666555443
No 167
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.65 E-value=0.00099 Score=53.68 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
.+.+.....+|.+|+.+++.+..++. -..-|..+...|...|+++.|.++|-+- ..++..|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45566677889999999998877643 3456788889999999999999988642 246778889999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
|+.|.++-.+.. |.......|-+-..-.-..|++.+|.++|
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 999988876543 22334445544444444445444444433
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.64 E-value=0.014 Score=46.30 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=65.3
Q ss_pred hhhhhhHHHHH---HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHH
Q 045498 22 MCKIREIDSAI---KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM 95 (207)
Q Consensus 22 ~~~~g~~~~a~---~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 95 (207)
+...|+-++|. +.|+ ..+.+.|+.+--.+....++++|++.|....+.+ +-+...+..+--.=.+.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 34455556655 3333 3456677777777777888888888888877654 344555555444444445555544
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 96 ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 96 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.....+.+.. +.....|..+..++.-.|+...|..++++..+.
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444432 112334445555555555555555555555444
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00043 Score=38.75 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=54.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-chhHHHHHHHhh
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN-ETDRASSFLKKN 206 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m 206 (207)
+...|..+...+.+.|++++|...|++..+.. +-+...|..+..++...| ++++|.+.+++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46788899999999999999999999999874 337788999999999999 899999999875
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00061 Score=37.62 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=28.6
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.+...|++++|...|++..+.. +-+...+..+..++...|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555555555544 224455555555555555555555555555443
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.00074 Score=44.03 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=48.0
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----hCCCCCChhhH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS-----EKGLVPGVVTY 148 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~~ 148 (207)
+...++..+...|++++|..+.+.+.... +.+...|..+|.+|.+.|+...|.+.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667777778888888888888887765 4477788888888888888888888887764 34777776654
No 172
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.56 E-value=0.018 Score=45.94 Aligned_cols=158 Identities=10% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
|-.-+....+.+++......|+..... -+.....+|...+......+-++.+.+++++..+. ++..-...|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 333344445566666666666665432 33334456777776666777777777777776654 2233566677777
Q ss_pred cCCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCh--hhHHHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEK------GLVPGVVTYNILINGLCKKGMIME---ADKLLVQMKEKGCFPDS--TSFNTVIQGF 190 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 190 (207)
+.+++++|-+.+...... .-+.+-..|..+-...++.-+.-. ...+++.+... -+|. ..|.+|.+.|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 777777777776665432 112233444444444333322221 11222222111 1222 3455666666
Q ss_pred HhcCchhHHHHHHHhh
Q 045498 191 LVKNETDRASSFLKKN 206 (207)
Q Consensus 191 ~~~~~~~~a~~~~~~m 206 (207)
.+.|++++|..++++.
T Consensus 259 Ir~g~~ekarDvyeea 274 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEA 274 (835)
T ss_pred HHhhhhHHHHHHHHHH
Confidence 6666666666666553
No 173
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.55 E-value=0.0031 Score=45.15 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=76.0
Q ss_pred cCCCccHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----------------Chh
Q 045498 34 KGICLDVFVYSSLINGLCTF-----NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----------------GRF 92 (207)
Q Consensus 34 ~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~ 92 (207)
.+-+.|..+|-..+..+... +.++-.-..++.|++.|+.-|..+|+.||+.+=+.. +-.
T Consensus 61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 34456777888888777654 567777778888889999999999999998765422 223
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSE 138 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 138 (207)
.+..++++|...|+.||..+-..++.+|++.+- ..+..++.-.|.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 477888888888888888888888888887775 3445555555544
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.55 E-value=0.012 Score=40.69 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=90.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh-
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC- 121 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 121 (207)
.....+.+.|++.+|...|+.+..... +-.....-.+..++.+.|+++.|...++++.+.-.......+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344455678888899988888876521 12223455667788888888888888888766532211111221211111
Q ss_pred ------------cCCCHHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 122 ------------RVGRWEEARKKLDQLSEKGLVPGVVT------------------YNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 122 ------------~~~~~~~a~~~~~~~~~~g~~~~~~~------------------~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
..+...+|...|+.+.+.- |+..- --.+...|.+.|.+..|..-++.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1122456677777766552 22211 123467788999999999999999
Q ss_pred HHc--CCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 172 KEK--GCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 172 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
.+. +......+...++.++.+.|..+.+.
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 887 11122356688899999999887544
No 175
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.55 E-value=0.022 Score=45.44 Aligned_cols=149 Identities=7% Similarity=0.044 Sum_probs=104.4
Q ss_pred CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------CCcc
Q 045498 36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YELN 109 (207)
Q Consensus 36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~ 109 (207)
+.....+|...+......+-++-+..++++..+. ++..-+-.|..++..+++++|.+.+....... .+.+
T Consensus 134 vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn 209 (835)
T KOG2047|consen 134 VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSN 209 (835)
T ss_pred hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccch
Confidence 3344456777777777888889999999998765 33347778888899999999998888775432 2446
Q ss_pred HHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498 110 IEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (207)
...|..+.+..++..+.-. ...+++.+... -+| ...|.+|..-|.+.|.+++|..+|++.... ..+..-|.
T Consensus 210 ~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt 285 (835)
T KOG2047|consen 210 HQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFT 285 (835)
T ss_pred hhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHH
Confidence 6677777777766655333 33444444432 234 346889999999999999999999987765 33556677
Q ss_pred HHHHHHHh
Q 045498 185 TVIQGFLV 192 (207)
Q Consensus 185 ~l~~~~~~ 192 (207)
.+..+|+.
T Consensus 286 ~ifd~Ya~ 293 (835)
T KOG2047|consen 286 QIFDAYAQ 293 (835)
T ss_pred HHHHHHHH
Confidence 77776654
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.012 Score=43.66 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=102.2
Q ss_pred HHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHH--HHhcC-------ChhHHHHHHHHHHhCCCCcchh-hHHHHHhhH
Q 045498 18 RINGMCKIREIDSAI--KKGICLDVFVYSSLING--LCTFN-------RLKEAVELFDKMVAQGITAELV-TYNPLIHDN 85 (207)
Q Consensus 18 ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~--~~~~~-------~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~ 85 (207)
++--|.+.+++.+|. -....|+. .|.-++.+ +...| ...-|.+.|.-.-+++..-|.. --.++...+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Ptt-P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTT-PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCC-hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 344567888898888 33344432 12223332 22223 2344555554444454444432 233444555
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCCHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI-LINGLCKKGMIMEA 164 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~~~~~~a 164 (207)
--..++++++-.+..+...-.. |...-..+..+.+..|++.+|+++|-.+....++ |..+|-. |.++|.+.++++.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 5567778888777777665332 3333335677888888888888888777665555 5556654 45788888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHH-HHHHHHhcCchhHHHHHHH
Q 045498 165 DKLLVQMKEKGCFPDSTSFNT-VIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~ 204 (207)
++++-.+... .+..+... +..-|-+.+++--|.+.|+
T Consensus 448 W~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 448 WDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred HHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8776554322 22222222 3335556666655555444
No 177
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.50 E-value=0.015 Score=42.67 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh--hcC----hhhHHHHHHHHHhCCC---CccHHHHHHHHHHHhcCCC-
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWE--KQG----RFSAMALLQTLERDKY---ELNIEVYSLVIDGLCRVGR- 125 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~- 125 (207)
+++.+.+++.|++.|+.-+..+|-+..-.... ..+ ..++..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999998888776664433333 223 3458999999998753 3455667777655 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 126 ---WEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 126 ---~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
.+.++.+|+.+.+.|...+ ......++........ ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3567888889988887644 2334444443332222 3478889999999999988777665543
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0067 Score=43.70 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=77.9
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CChhhHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNIL 151 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l 151 (207)
..|...+....+.|++++|...|+.+.+..... ....+.-+...|...|++++|...|+.+.+.-.. .....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345666655566799999999999998764321 1357778889999999999999999999865221 124455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
...+...|+.++|..+|+.+.+. -|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 67788899999999999999876 35543
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.004 Score=44.78 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=73.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (207)
-+.+.+++++|+..|.+.++.. +-|.+-|..--.+|.+.|.++.|.+=.+.....+ +-...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3556778888888888888764 4566667777788888888888888777777664 2256688888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHH
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILI 152 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li 152 (207)
|.+.|++..+. .|+-.+|-.=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 88888877775 56655554433
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.47 E-value=0.012 Score=48.42 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=95.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH--hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498 51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN--WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 51 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (207)
...+++.+|++-..++.+.. |+ ..|...++++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678888888888887763 34 2344445444 5678888999888887766644 78888888899999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 191 (207)
|..+|++.... .|+..-...+..+|.|.+++.+-.++--+|-+. ++-+...|.+++....
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 99999988876 567777888888888888887655555444443 3334455555555443
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.47 E-value=0.002 Score=36.44 Aligned_cols=56 Identities=20% Similarity=0.014 Sum_probs=35.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456666666666666666666433 4555556666666666666666666666654
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.023 Score=41.07 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=82.8
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCChhhH
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
+-|...|-.|-.+|...|+.+.|..-|....+.. .++...+..+..++.... .-.++..+++++...... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 5577788888889999999999999888877764 346666666665554332 356788888888887654 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
..|...+...|++.+|...|+.|.+. .|....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 77778888899999999999998886 2333335555543
No 183
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.022 Score=44.20 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=73.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH-------------------------HHHhhHhhhcChhhHHHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYN-------------------------PLIHDNWEKQGRFSAMALLQT 100 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------------~ll~~~~~~~~~~~a~~~~~~ 100 (207)
+-+++.+.++++.++..|.+.......|+...=. .--+.+-+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3345666778888888888876554444422110 012234456666667777776
Q ss_pred HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+.+.. +-|...|....-+|.+.|.+..|.+--+...+... +....|.-=..++....++++|.+.|++.++.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66665 33566666666677777777666666655555521 12334444444444555666666666666654
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.017 Score=38.16 Aligned_cols=89 Identities=7% Similarity=-0.143 Sum_probs=70.6
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 345689999999999988876643 5666777888888889999999999877766543 55566677788889999999
Q ss_pred HHHHHHHHHHc
Q 045498 164 ADKLLVQMKEK 174 (207)
Q Consensus 164 a~~~~~~m~~~ 174 (207)
|...|....+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999988874
No 185
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.38 E-value=0.054 Score=44.06 Aligned_cols=199 Identities=7% Similarity=-0.035 Sum_probs=119.2
Q ss_pred ccccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcchhhHH
Q 045498 7 RFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYN 79 (207)
Q Consensus 7 ~~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~ 79 (207)
.+.-|+.+|..+.-+..+.|+++.+. ..+.--....|+.+-..+.-.|.-..|..+.+.-..... ++|+..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34556777777777777777777655 233334456677777777777777777777776544322 22333333
Q ss_pred HHHhhHhhh-cChhhHHHHHHHHHhC--C--CCccHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHhCCCCC
Q 045498 80 PLIHDNWEK-QGRFSAMALLQTLERD--K--YELNIEVYSLVIDGLCRV-----------GRWEEARKKLDQLSEKGLVP 143 (207)
Q Consensus 80 ~ll~~~~~~-~~~~~a~~~~~~m~~~--~--~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~g~~~ 143 (207)
..-+.|.+. +..++++..-.+.... + -......|..+--+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 333444433 4555555554444331 1 011122233332233211 1234566677777666544
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|......+.--|+..++++.|....++..+.+-.-+...|..|.-.+...+++.+|+.+.+..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 333333344456678889999999999888866668888888888899999999998887643
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.36 E-value=0.037 Score=41.80 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=105.2
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhh---hcChhhHHHHHHHHHhCCCCccHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWE---KQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
++.+...++-.|....+++..+++++.+...- +.-+..+-....-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44455566667999999999999999997651 22222322334445566 8899999999999666666778888
Q ss_pred HHHHHHHHhc---------CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH----HHHHHH---H-HHHHcC
Q 045498 113 YSLVIDGLCR---------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM----EADKLL---V-QMKEKG 175 (207)
Q Consensus 113 ~~~li~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~----~a~~~~---~-~m~~~~ 175 (207)
|..+.+.|-. ...+++|.+.|++--+. .||..+--.++..+...|... +..++- . .+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888777642 22467788888766554 244443333333333344321 222322 2 222334
Q ss_pred CC---CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 176 CF---PDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 176 ~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.. .+--.+.+++.+++-.|+.++|.+..++|
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 34445667888889999999999988876
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.36 E-value=0.00064 Score=39.07 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK----GC-FPD-STSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+++.+...|...|++++|...|++..+. |- .|+ ..++..+..++...|++++|.+++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555556666666666665555432 10 111 34555556666666666666666654
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.034 Score=41.32 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=88.7
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
...+.+..|.-+...|+...|.++-.+. + .|+..-|..-+.+++..++|++...+-.. . -++..|-.++.
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~ 245 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVE 245 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHH
Confidence 3446677788888899998888886665 3 47889999999999999999987775432 1 23478999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
+|.+.|+..+|..++.. ..+..-+..|.+.|++.+|.+.-.+.
T Consensus 246 ~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999988876 12366788889999999998765543
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.015 Score=36.52 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHh
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLC 121 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~ 121 (207)
+-.++-..|+.++|+.+|++....|...+ ...+-.+-..+...|++++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456677888899999988888776544 234555667778888889998888887665211 01222222334677
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
..|+.++|.+.+-..... +...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 888888888877665542 4446666665554
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.018 Score=41.53 Aligned_cols=113 Identities=18% Similarity=0.077 Sum_probs=89.3
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc---ChhhHHHHHHHHHhCCCCccHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ---GRFSAMALLQTLERDKYELNIEVY 113 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 113 (207)
+-|...|-.|-..|...|+++.|..-|.+..+.. ++++..+..+-.++.... ...++..++++..+.+ +-++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4478889999999999999999999999998763 456666666666665544 3456999999999886 3377788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
.-+-..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 888889999999999999999999984 44445555554
No 191
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.30 E-value=0.0041 Score=44.57 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred CcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----------------CHHHHH
Q 045498 72 TAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----------------RWEEAR 130 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~ 130 (207)
..|..+|-..+..+... +..+-....++.|.+.|++-|..+|+.|+..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666777777666543 556667778889999999999999999999886542 224678
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045498 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKE 173 (207)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 173 (207)
+++++|...|+.||..+-..|+.++.+.+.. .+..++.-.|-+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8999999999999999999999999998865 455555555544
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.014 Score=38.49 Aligned_cols=93 Identities=13% Similarity=-0.056 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
..-.-+.+.|++++|..+|.-+.-.+ +-+..-|..|-.++...+++++|...|......+. -|...+--.-.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 34445567899999999999987765 34555667777788888999999999988665543 24455666777889999
Q ss_pred CHHHHHHHHHHHHhC
Q 045498 125 RWEEARKKLDQLSEK 139 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~ 139 (207)
+.+.|...|+.....
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988874
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.036 Score=39.54 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=95.4
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI---- 152 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li---- 152 (207)
+.+.++..+...+++.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|+...+..-+.+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3466777777788888888999999888777788888999999999999999999999887665455655555544
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 153 -NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 153 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..|.-.+++..|...+.+....+- -|+...+.-.-+..-.|+..+|.+.++.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888776532 24444444444445567889999888776
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.25 E-value=0.038 Score=46.35 Aligned_cols=187 Identities=15% Similarity=0.064 Sum_probs=104.3
Q ss_pred hhHHHHHhhhhhhhHHHHH---HcCCC---ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhH
Q 045498 14 VYGIRINGMCKIREIDSAI---KKGIC---LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDN 85 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~---~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~ 85 (207)
.|..+-..|+...+...|. ...+. -+...+......|++..+++.|..+.-..-+.. +.- ...|...--.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccc
Confidence 4455555555544444444 22222 234556667777777777777776622211110 001 11122222344
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCCHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL--INGLCKKGMIME 163 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~~~~~~ 163 (207)
...++...+..-|+...+..+ -|...|..+..+|.+.|++..|.++|.+.... .|+ .+|... ....+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 556666667776766665543 36778888888888888888888888877765 332 233322 233456788888
Q ss_pred HHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 164 ADKLLVQMKEK------GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 164 a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+...+...... +...-..++-.+...+...|-..++..++++
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88887766532 2222334555555555555655555555544
No 195
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.036 Score=46.78 Aligned_cols=146 Identities=17% Similarity=0.120 Sum_probs=91.7
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
.+.+|..+..+-.+.|.+.+|++-|-+. -|+..|...+..+.+.|.+++..+.+....+..-+|.+. +.+|-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456888888888888888877766332 266788899999999999999888887766665555543 57788
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCC
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK--------------------GCFP 178 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p 178 (207)
+|++.+++.+.++++. .||......+-.-|...+.++.|.-+|...... .-..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888877666542 234444444444444444444444433321100 0113
Q ss_pred ChhhHHHHHHHHHhcCchhHH
Q 045498 179 DSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a 199 (207)
+..||..+-.+|...+.+.-|
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH
Confidence 556677777777666666554
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.20 E-value=0.036 Score=45.02 Aligned_cols=124 Identities=17% Similarity=0.024 Sum_probs=65.8
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
|...-..+.+.+..++|...+.+..+.. +.....|...-..+...|.+++|.+.|.......+. ++...+++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344444455555555555554444432 224445555555555556666666666555554322 34455555666666
Q ss_pred cCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 158 KGMIMEADK--LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 158 ~~~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.|+...+.. ++.++.+.+ +.+...|..+...+-+.|+.++|.+.|.
T Consensus 731 ~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 665555555 555555543 2355556666666666666666655554
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0046 Score=34.88 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=28.0
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.+.+.+++++|...++.+...+. .+...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555555555555554432 24444444555555555555555555555544
No 198
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.16 E-value=0.029 Score=44.70 Aligned_cols=151 Identities=11% Similarity=-0.038 Sum_probs=89.6
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
+-...|....--.+...|+-++|......-.+.. .-+.+.|+.+--.+....++++|+..|+...+.+ +-|...+.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3334444444444555666677766666555543 3355666666666666667777777777666654 2255555555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHH
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF 190 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~ 190 (207)
----...++++.......+..+.... ....|..+..++.-.|+...|..+.++..+.. -.|+...+......+
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 44445666666666666666655322 44556666666677777777777777776553 245666555544433
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.13 E-value=0.0028 Score=36.36 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PG-VVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.+++.+...|.+.|++++|...+++..+. |.. |+ ..++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777776665432 111 11 4456666677777777777777776654
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.07 E-value=0.084 Score=40.64 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=107.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH-HHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVI 117 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li 117 (207)
..+|...|+.-.+..-.+.|..+|-+..+.+ +.++..+++++|..++ .|+...|..+|+--... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567788888888889999999999999988 6788889999997555 57888899999874433 234433 35677
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
.-+.+.++-+.|..+|+..... +..+ ...|..+|.--...|++..+..+-++|.+. -|-..+......-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 7888899999999999955432 1112 458999999999999999998888888765 44444444443333
No 201
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.06 E-value=0.025 Score=47.34 Aligned_cols=160 Identities=11% Similarity=-0.045 Sum_probs=94.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDG 119 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~ 119 (207)
..|..|-..|+...+...|.+.|+...+.+ ..+......+...|++..+++.|..+.-.--+.... .-..-|.-.--.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 345556666666556666667776666553 334455666677777777777777763222222110 011122223334
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCchh
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG--FLVKNETD 197 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~ 197 (207)
|.+.++..++..-|+...+..++ |...|..+..+|.+.|++..|.++|.+.... .|+ .+|.....+ -+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHH
Confidence 55666666777777766666554 7778888888888888888888888877654 343 233333322 34567777
Q ss_pred HHHHHHHh
Q 045498 198 RASSFLKK 205 (207)
Q Consensus 198 ~a~~~~~~ 205 (207)
+|...+..
T Consensus 648 eald~l~~ 655 (1238)
T KOG1127|consen 648 EALDALGL 655 (1238)
T ss_pred HHHHHHHH
Confidence 77666554
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.031 Score=41.60 Aligned_cols=132 Identities=10% Similarity=0.046 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH-HHHHHh
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL-VIDGLC 121 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~ 121 (207)
-.++.+.+.-..++++++-.++.+..-=..-| ...-.+..+.+..|++.+|.++|-++....++ |..+|.+ +.++|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 44566666667789999999988876533333 33334677899999999999999777655555 5666665 458889
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTY-NILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
+++.++.|++++-.+... .+..+. ..+..-|.+.+.+--|.+.|+.+... .|++.
T Consensus 440 ~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred hcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 999999997777655432 233333 34457788899999999999988776 34443
No 203
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.05 E-value=0.1 Score=40.99 Aligned_cols=131 Identities=16% Similarity=0.131 Sum_probs=105.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhcChhhHHHHHHH-HHhCCCCccHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVID 118 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~ 118 (207)
.+|...|+...+..-+..|..+|.+..+.+..+ +..+.+++|.-+| .++..-|.++|+- |++.|- +..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 457777888888888999999999999988777 6677788886555 5778899999987 444432 3344467788
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
-+...|+-..+..+|++....++.|+ ...|..++..-...|++..+.++-+++...
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88889999999999999999866655 578999999999999999999998887654
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.029 Score=46.23 Aligned_cols=173 Identities=18% Similarity=0.046 Sum_probs=114.7
Q ss_pred HhhhhhhhHHHHH-HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCcchhhHHHHHhhHhhhc
Q 045498 20 NGMCKIREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-G--------ITAELVTYNPLIHDNWEKQ 89 (207)
Q Consensus 20 ~~~~~~g~~~~a~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~ll~~~~~~~ 89 (207)
+.|...|++|.|. ....-.+-.+|..|.+.|.+.++.+-|.-.+-.|... | ..|+ .+=.-..-.....|
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 3466788888888 3333446678999999999999998888777777532 1 1121 11112222346778
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
..++|+.+|++-++. ..+=..|-..|.|++|.++-+.=.+-. =..||......+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999987753 444556777999999999877543332 23477777777777888888888776
Q ss_pred HH----------HHcC---------CCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 170 QM----------KEKG---------CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 170 ~m----------~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.. .... -.-|...|..-.+.+-..|+.|.|+.+|..
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 43 2110 112445555556666778888888888764
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.054 Score=36.65 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=66.8
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNI 150 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 150 (207)
.|+...--.|-.+..+.|+..+|...|.+...--+.-|....-.+..+....++...|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444445555666666666666666666554434445555566666666666666666666655554210 11223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
+.+.+...|.+.+|+..|+..... -|+...-......+.+.|+.+++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 455666666666666666666554 33333333333344455544444
No 206
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.91 E-value=0.19 Score=41.78 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=92.4
Q ss_pred hHHHHHhhh--hhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 15 YGIRINGMC--KIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 15 ~~~ll~~~~--~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
|..++.++. +.|+.++|. -.+. .-|..|...+-.+|...++.++|..+|++.... -|+......+..+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 444444443 556666665 1111 126667777777777778888888888777655 355666666777777
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR----------WEEARKKLDQLSEKG-LVPGVVTYNILINGL 155 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~ 155 (207)
+.+++.+-.+.--++-+. ++-+...|.++++.....-. ..-|.+.++.+.+.+ .--+..-...-....
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 777665533333232222 22244455555544432210 223555555555543 111222222223344
Q ss_pred HhcCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 156 CKKGMIMEADKLLVQ-MKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
-..|++++|+.++.. .-+.-..-+...-+--+..+...++|.+..++
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 456777777777733 22221111222222333444455555554443
No 207
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.84 E-value=0.058 Score=34.80 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
....++..+.+.+.+.....+++.+.+.+ +.+...++.++..|++... ......++. .++......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34567888888889999999999998877 4677889999999987643 334444432 123334455788888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 192 (207)
+.+-++++.-++.++.. . ...+..+... ++++.|.+++..- .+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 88888888888877533 2 2233333333 7788888877751 266678888777654
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.84 E-value=0.063 Score=41.36 Aligned_cols=98 Identities=14% Similarity=-0.026 Sum_probs=64.7
Q ss_pred cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
.+...++.+-.++...|++++|...|++..+.. |+. ..|..+..+|.+.|+.++|.+.+++..+.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 345677888888888888888888888877654 332 358888888888888888888888887752 11 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 045498 149 NILIN--GLCKKGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 149 ~~li~--~~~~~~~~~~a~~~~~~m~~~~~ 176 (207)
..+.. .+...++.++..++++...+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122344566677777776664
No 209
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.83 E-value=0.12 Score=38.38 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=53.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
.+..+.-.|+...|+.....+.+.. +.|...+..--.+|...|++..|+.=++...+..-. +..++..+-..+-..|+
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhh
Confidence 3444555678888888888777753 567677777777777777777777666655444322 33344444444444555
Q ss_pred HHHHHHHHHHHHh
Q 045498 126 WEEARKKLDQLSE 138 (207)
Q Consensus 126 ~~~a~~~~~~~~~ 138 (207)
.+.++..+++..+
T Consensus 239 ~~~sL~~iRECLK 251 (504)
T KOG0624|consen 239 AENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHHc
Confidence 5544444444433
No 210
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.16 Score=39.80 Aligned_cols=84 Identities=17% Similarity=0.033 Sum_probs=40.1
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
+.+.|++..|.+-|.+++...+. |...|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555422 45555555555556665555555544444431 11222233333333333445555
Q ss_pred HHHHHh
Q 045498 200 SSFLKK 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
.+.|.+
T Consensus 446 leay~e 451 (539)
T KOG0548|consen 446 LEAYQE 451 (539)
T ss_pred HHHHHH
Confidence 554443
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.77 E-value=0.085 Score=35.74 Aligned_cols=136 Identities=19% Similarity=0.173 Sum_probs=103.5
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-ccHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LNIE 111 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~ 111 (207)
+-.+.|++.---.|-.+....|+..+|...|++....-+.-|....-.+-++....+++..+...++.+.+.... -+..
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 556677777777889999999999999999999987666677788888888889999999999999998876421 1233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
+--.+.+.+...|.+..|+.-|+...+. -|+...-...-..+.+.|+.+++..-+..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4556778899999999999999999987 44544444444555667766655544433
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.66 E-value=0.23 Score=39.20 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=101.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCcch-----hhHHHHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQG-ITAEL-----VTYNPLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
.+++..+=.|+-+.+++.+.+-.+.+ +.-.. -+|+..+..++. ....+.+.+++..+.++ -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444555788888888888766543 22111 234444443333 44667799999998876 35665555
Q ss_pred HH-HHHHhcCCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-H
Q 045498 115 LV-IDGLCRVGRWEEARKKLDQLSEKGL---VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ-G 189 (207)
Q Consensus 115 ~l-i~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~ 189 (207)
-. -+.+...|++++|.+.++....... ......+--+.-.+.-.++|++|...|..+.+..- .+...|.-+.- +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 44 4566788999999999997654211 11233455566667888999999999999998632 24444444433 3
Q ss_pred HHhcCch-------hHHHHHHHhh
Q 045498 190 FLVKNET-------DRASSFLKKN 206 (207)
Q Consensus 190 ~~~~~~~-------~~a~~~~~~m 206 (207)
+...|+. ++|.+++++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 3456777 7788777653
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.63 E-value=0.14 Score=36.39 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=107.3
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
|-...|+.-+.. .+.|++++|.+.|+.+.++.. +-...+--.++-++.+.++.+.|....++..+.-......-|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 344456555554 588999999999999987631 33445666778889999999999999999776643323334555
Q ss_pred HHHHHhcC-------CCHHH---HHHHHHHHHhC----CCCCChhhH------------HHHHHHHHhcCCHHHHHHHHH
Q 045498 116 VIDGLCRV-------GRWEE---ARKKLDQLSEK----GLVPGVVTY------------NILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 116 li~~~~~~-------~~~~~---a~~~~~~~~~~----g~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~ 169 (207)
.|.+++.. .+... |..-|+++... ...||...- ..+.+.|.+.|.+..|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 55554422 23333 33333443332 333443321 345577889999999999999
Q ss_pred HHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHH
Q 045498 170 QMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 170 ~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
+|.+. .+- ....+-.+..+|-..|..++|...
T Consensus 192 ~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 192 EVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99987 222 234566778888888888877654
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.63 E-value=0.078 Score=40.87 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=79.9
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 113 (207)
.+...++.+-.+|.+.|++++|+..|++..+.+ |+. .+|..+-.+|...|+.++|...+++..+.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 356889999999999999999999999988764 443 358889999999999999999999988752 11 22
Q ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 114 SLVID--GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 114 ~~li~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
..+.. .+....+.++..++++...+.|.. ....+....+.......+-...+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~-~g~~~~~~~kL~~E~~aPfR~~R 200 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGED-IGSSFRRDLKLISEVQAPFRGVR 200 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCc-cCCchhhHHHHHHHHhchHHHHH
Confidence 21111 111222334556666666666543 33445554444444444443333
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.26 Score=39.23 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=104.6
Q ss_pred HhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH--------HHHhCCCCccH
Q 045498 41 FVYSSLINGLCT--FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ--------TLERDKYELNI 110 (207)
Q Consensus 41 ~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~ 110 (207)
..+.+++..+.+ .....++..++...-+....-+..+.-.++......|+++.|.+++. .+.+.+..|
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P-- 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP-- 417 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--
Confidence 344555544433 23567777777777665422234566677788889999999999999 555544444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGL--VPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (207)
.+...++..+.+.++-+.|..+++.....-. .+. ..++..+...-.+.|+.++|..+++++.+.+ ++|..+..
T Consensus 418 ~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~ 496 (652)
T KOG2376|consen 418 GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV 496 (652)
T ss_pred hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence 4556666777777777777777766543200 112 2233344444567899999999999999863 57888999
Q ss_pred HHHHHHHhcCchhHHHHHH
Q 045498 185 TVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~ 203 (207)
.++.+|++.. .++|..+-
T Consensus 497 ~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 497 QLVTAYARLD-PEKAESLS 514 (652)
T ss_pred HHHHHHHhcC-HHHHHHHh
Confidence 9999998764 56665543
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.11 Score=39.29 Aligned_cols=125 Identities=15% Similarity=0.066 Sum_probs=85.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-----CCCc---------chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHH
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQ-----GITA---------ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY 113 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 113 (207)
+.+.+.|++..|..-|++..+. +.++ -..++..+.-++.+.+++..|+..-......+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4577889999998888875432 1111 22356666777888888888888888888776 4577777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKEK 174 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 174 (207)
.---.++...|+++.|...|+.+.+..+. |...-+.|+..--+.... +...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77778888888999999999888887432 444444455444444444 3446777777643
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.52 E-value=0.094 Score=42.24 Aligned_cols=71 Identities=7% Similarity=-0.011 Sum_probs=39.4
Q ss_pred ccccchhhhHHHHHhhhhhhhHHHHH---HcCCCcc-----------HHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCC
Q 045498 7 RFKGNFHVYGIRINGMCKIREIDSAI---KKGICLD-----------VFVYSSLINGLCTFNR--LKEAVELFDKMVAQG 70 (207)
Q Consensus 7 ~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~-----------~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~ 70 (207)
.+.|...-+.+-+..|...|.+++|. -.|+..+ .-.++..=.+|.+.++ +-+.+.-+++++++|
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34555556666777788888888888 2222221 2223333344444433 334444456677777
Q ss_pred CCcchhh
Q 045498 71 ITAELVT 77 (207)
Q Consensus 71 ~~~~~~~ 77 (207)
-.|+...
T Consensus 631 e~P~~iL 637 (1081)
T KOG1538|consen 631 ETPNDLL 637 (1081)
T ss_pred CCchHHH
Confidence 7777543
No 218
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.50 E-value=0.077 Score=38.44 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFNT 185 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 185 (207)
.++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 46677888888899999999999999888654 888999999999999999999999998876 488888887776
Q ss_pred HHHH
Q 045498 186 VIQG 189 (207)
Q Consensus 186 l~~~ 189 (207)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6666
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.48 E-value=0.11 Score=33.49 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=35.2
Q ss_pred HhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 51 CTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 51 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
.+.|++++|.+.|+.+..+-. +-...+--.|+.++.+.+++++|...++++.+.........|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 355666666666666655410 11223334455556666666666666666555543322234444444443
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.17 Score=38.24 Aligned_cols=121 Identities=10% Similarity=-0.022 Sum_probs=88.0
Q ss_pred hhHhhhcChhhHHHHHHHHHhC-----CC---------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 83 HDNWEKQGRFSAMALLQTLERD-----KY---------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
+.+.+.|++..|..-|++.... +. ..-...++.+..++.+.+++..|.+.-.+.+..+.. |....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 4667788888888887774322 11 122357788889999999999999999998888644 88888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCchh-HHHHHHHhh
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS-FNTVIQGFLVKNETD-RASSFLKKN 206 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~-~a~~~~~~m 206 (207)
-.=-.++...|+++.|+..|+.+++. .|+..+ -..|+.+-.+..... +..++|..|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999986 555444 444554444444443 346666665
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.42 Score=39.71 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=109.7
Q ss_pred hhHHHHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHH----HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498 14 VYGIRINGMCKIREIDSAI--KKGICLDVFVYSSLING----LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 87 (207)
....-|+.+++...++-|. ......+......++.. +.+.|++++|..-|-+-... +.|+ .+|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3445566666777777777 33334444444444444 44679999998888776554 2333 25566677
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
+.+....-.+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 77777788888888888876 66667888999999999988888777655 3321 11244555666666666666665
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 168 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-..... +......+ +-..|++++|.++++.+
T Consensus 486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 554332 22323333 34456677777766543
No 222
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.40 E-value=0.15 Score=34.01 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=76.2
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
..+++|+...|..+++.+.+.|++.. +.++...++-+|.......+-.+.. ....+.++--+|.++- ...
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL----~~~ 91 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL----GTA 91 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh----hhh
Confidence 67778888888888888888887644 4445556666666555555433332 2222333333333220 013
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+|+-..+.+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 456667777888888888777765332 22334556677677777776666666666543
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.37 E-value=0.3 Score=37.12 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCccHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 35 GICLDVFVYSSLINGL--CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 35 ~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
-+..|....-.++.+- .-.|+++.|.+-|+-|...- ..-.--...|.-...+.|..+.|.+.-++.-+.-. --...
T Consensus 113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA 190 (531)
T COG3898 113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWA 190 (531)
T ss_pred hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchH
Confidence 3455555555565543 34689999999999886531 11111223333333444555555555444333221 12234
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC---------------------------------------CCCCChhhH-HHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEK---------------------------------------GLVPGVVTY-NILI 152 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------------g~~~~~~~~-~~li 152 (207)
+...+...+..|+|+.|+++++.-+.. .+.||..-- -.-.
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 455555555555555555555543221 223443222 2234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 045498 153 NGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.++.+.|+..++-.+++.+-+.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc
Confidence 6667777777777777777766
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.12 Score=37.00 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ChhhHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFP-DSTSFNTVI 187 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~~~~~l~ 187 (207)
.|+.-+.. .+.|++..|...|....+.... .....+-.|..++...|+++.|..+|..+.+. +-.| -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666655 4566688888888887776332 23445667778888888888888888877764 1122 225566677
Q ss_pred HHHHhcCchhHHHHHHHhh
Q 045498 188 QGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m 206 (207)
.+..+.|+.++|...|+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 7777888888888887764
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.28 E-value=0.15 Score=32.83 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=63.0
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
...++..+...+........++.+...+ ..+....+.++..|++.+. +...+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4457777777788999999999988887 3678899999999997743 444455442 1244445567777788
Q ss_pred cCCHHHHHHHHHHHH
Q 045498 158 KGMIMEADKLLVQMK 172 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~ 172 (207)
.+.++++..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 888888888877653
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.24 E-value=0.17 Score=38.01 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=118.6
Q ss_pred hhhHHHHHhhhhhhhHHHHH-HcCC--------Ccc---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcc---hh
Q 045498 13 HVYGIRINGMCKIREIDSAI-KKGI--------CLD---VFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAE---LV 76 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-~~~~--------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~---~~ 76 (207)
.+|..+..+.++.|.+++++ ..+. .-+ -..|-.+-.++-+--++.+++.+-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45667778888888888887 1111 111 233444444444445555555555443321 22221 12
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCC-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCChh-
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDK-----YELNIEVYSLVIDGLCRVGRWEEARKKLDQL----SEKGLVPGVV- 146 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~- 146 (207)
..-++-.++...+.++++++.|+...+.- ......+|..+-.-|.+..++++|.-+.... .+.+++ |..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 34446677777888899998888765432 1224568889999999999999987665543 333433 222
Q ss_pred hH-----HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 147 TY-----NILINGLCKKGMIMEADKLLVQMKEK----GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 147 ~~-----~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
-| ..+.-++-..|.+..|.+..++..+. |-.| -......+.+.|...|+.+.|..-|++.|
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 33445566778888888888776543 3222 23445667778889999999998888764
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.34 Score=36.11 Aligned_cols=151 Identities=12% Similarity=0.127 Sum_probs=91.2
Q ss_pred cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 53 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
.|+..+|-..++++.+. .|.|...+.-.=.+|...|+.+.-...++++... +.+-...+-....-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45666666667776665 3566666666667777777777777777666533 2222233333444555677888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
++.-++..+.+.. |.-.-.+....+-..|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8877777766432 5555566666666777777777766543321 1111123344455556666778888877764
No 228
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.20 E-value=0.12 Score=37.42 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=67.5
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYN 149 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 149 (207)
..++..++..+...++.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3578888889999999999999999988876 45788999999999999999999999887765 58888888887
Q ss_pred HHHHHHH
Q 045498 150 ILINGLC 156 (207)
Q Consensus 150 ~li~~~~ 156 (207)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777643
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.34 Score=37.87 Aligned_cols=132 Identities=15% Similarity=0.043 Sum_probs=79.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
..-.+.++..+-+.|.++.|+++...-. .-.....+.|+.+.|.++.++ ..+...|..|-+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 3446777777777777777777653321 123344556666666665543 2256678888888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
..+.|+++-|++.+.+.. -+..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 888888888888877543 356666667777777777777766665532 44444555555666666
Q ss_pred HHHHH
Q 045498 200 SSFLK 204 (207)
Q Consensus 200 ~~~~~ 204 (207)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.42 Score=36.53 Aligned_cols=150 Identities=12% Similarity=-0.029 Sum_probs=95.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh--hHhhhcChhhHHHHHHHHHhCCCCccHHH-------------H
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH--DNWEKQGRFSAMALLQTLERDKYELNIEV-------------Y 113 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------~ 113 (207)
++.-.++.++|.+.--..++.. ....+...++ ++....+.+.+...|.+-.+.+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3445677777777766665543 1123344443 3344567777777777766554 33221 1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHH
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS---FNTVI 187 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~ 187 (207)
..--.-..+.|++.+|.+.|.+.+.. ..+|+...|-....+..+.|+.++|..-.++..+. |..- |-.-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11223345788999999999888765 33556667777778888899999999888877654 3332 22233
Q ss_pred HHHHhcCchhHHHHHHHhhC
Q 045498 188 QGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m~ 207 (207)
.++...++|++|.+-+++.|
T Consensus 329 ~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666788888888887653
No 231
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.1 Score=38.25 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=79.6
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 109 (207)
..|.+.++.+...++..-.+..+++.+...+-+++.+- ..|+. +-.+.++ .+-.-++++++.++..=.+.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~ir-lllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHH-HHHccChHHHHHHHhCcchhccccc
Confidence 66777778888888888888889999999888886541 12221 1222232 2334566788988888889999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..+++.+|+.+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
No 232
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.04 E-value=0.34 Score=34.64 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=95.8
Q ss_pred HhhhhhhhHHHHH------HcCCCccHHhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh--h
Q 045498 20 NGMCKIREIDSAI------KKGICLDVFVY---SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE--K 88 (207)
Q Consensus 20 ~~~~~~g~~~~a~------~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~ 88 (207)
..+...|++++|. ....+-+...- -.+..++.+.+++++|...+++..+....-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 3344568888887 22222222222 34667889999999999999999886432222333333333321 1
Q ss_pred ---------------cC---hhhHHHHHHHHHhCCCC----ccHHH------------HHHHHHHHhcCCCHHHHHHHHH
Q 045498 89 ---------------QG---RFSAMALLQTLERDKYE----LNIEV------------YSLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 89 ---------------~~---~~~a~~~~~~m~~~~~~----~~~~~------------~~~li~~~~~~~~~~~a~~~~~ 134 (207)
.+ ...|+..|+++.+.-+. ++... --.+.+-|.+.|.+.-|..-++
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~ 199 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVE 199 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 11 23466777777655211 11111 1123455788899999999888
Q ss_pred HHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 135 QLSEK--GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 135 ~~~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
.+.+. +.+........++.+|...|..++|..+...+..
T Consensus 200 ~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 200 QMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 88875 2233455677888999999999999998877654
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.34 Score=34.39 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=105.1
Q ss_pred hhhHHHHHhhhhhhhHHHHH------HcCCCccHH------hHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCcchh
Q 045498 13 HVYGIRINGMCKIREIDSAI------KKGICLDVF------VYSSLINGLCTFNRLKEAVELFDKMV----AQGITAELV 76 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~ 76 (207)
..|.....+|-...++++|. ..+...|.. .|....-..-....+.++..++++.. +.| .|++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence 34566666777777777776 223333332 23334444445566677777766542 334 44433
Q ss_pred hHHHHHh--hHhhhcChhhHHHHHHHHHhC---CC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-
Q 045498 77 TYNPLIH--DNWEKQGRFSAMALLQTLERD---KY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG- 144 (207)
Q Consensus 77 ~~~~ll~--~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~- 144 (207)
.-. |=+ -...+-++++|+++|.+-... +- ..-...+...-+.+.+...+++|-..+.+-... .-.++
T Consensus 111 Ama-leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 111 AMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 211 111 123345677777777764322 10 111234555556667777777765554432211 11122
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 145 VVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
-..|-..|-.+.-..++..|...++.--.. .-.-+..+...|+.+| ..|+.+++..++.
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 234666667777788999999999874432 1233668899999988 6788888777653
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.96 E-value=0.011 Score=28.27 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHh
Q 045498 183 FNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
|..|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555566666666666666554
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.95 E-value=0.34 Score=37.55 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=89.3
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH-HHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY-NILIN 153 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~ 153 (207)
.+|...|+...+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+.=... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677788788888889999999998888 6678888899988776 56778888888854443 3455554 45667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchhHHHHH
Q 045498 154 GLCKKGMIMEADKLLVQMKEKGCFPD--STSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
.+.+.++-+.|..+|+.-.+. +..+ ...|..+|..=..-|+...+..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 777888889999999854433 2222 46788888877777777655544
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.3 Score=38.16 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=98.4
Q ss_pred hhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 13 HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
.-.+.++.-+.+.|..+.|+.--..|+ .-.....+.|+++.|.++.++. .+...|..|-..+...|+++
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD-----HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH-----HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH-----HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHH
Confidence 347888888889999999996655554 3456667889999998876443 36679999999999999999
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
-|...|.+.. -|..++--|.-.|+.+...++.+.....| -++....++.-.|+.+++.+++.+-
T Consensus 365 lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 365 LAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 9999998644 35677777888899888888888877765 3566666777788888888877653
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.90 E-value=0.54 Score=36.86 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44566677889999999999999865322 23457788999999999999999999987543
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.88 E-value=0.65 Score=36.73 Aligned_cols=129 Identities=18% Similarity=0.118 Sum_probs=87.7
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHH-hhHhhhcChhhHHHHHHHHHhCC---CCccHHHH
Q 045498 42 VYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLI-HDNWEKQGRFSAMALLQTLERDK---YELNIEVY 113 (207)
Q Consensus 42 ~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~ 113 (207)
.|+..+..+.. ....+.|.++++.+.++ -|+...|...- +.+...|+.++|.+.+++..... .+.....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 35555554443 45678899999999887 46766554443 45567899999999999755321 12234456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI-NGLCKKGMI-------MEADKLLVQMKE 173 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~m~~ 173 (207)
.-+.-++.-.++|++|.+.|..+.+..- -+...|.-+. .++...|+. ++|.++|.+...
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6677778889999999999999988632 2334444333 344566777 888888887653
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.37 Score=39.46 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
+....-.+..++...|.-++|.+.+-+.- .| ...+.+|...++|.+|.++-+
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666554321 11 224556667777777766644
No 240
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.17 Score=37.19 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=80.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----------hCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC---CCccHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMV----------AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEV 112 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~----------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~ 112 (207)
|.++|.....|+.-....-.+- ..|.+.+..+...++...-...+++.+...+-++...- ..|+. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 5556666666765443332322 23445555666666666666677777777776665432 11221 2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
-.+.++-+.+ -++++++-++..=..-|+-||..++..+|..+.+.+++.+|..+...|..+
T Consensus 104 ~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 104 IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2233333333 356678777777778888888888888888888888888888887777654
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.73 E-value=0.054 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 69 (207)
++..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777665
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.71 E-value=0.072 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555554443
No 243
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.66 E-value=0.56 Score=34.15 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHh-CCCCcchhhHHHHHhhHhhhcC--hhhHHHHHHHHHh-CCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 56 LKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQG--RFSAMALLQTLER-DKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 56 ~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
+.+|+++|+...- ..+--|..+...+++......+ ...-.++.+-+.. .+-.++..+...++..+++.++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542211 2244566677777777766222 2223333333332 2346677788888888888888888888
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCChhhHHHHHHHHH
Q 045498 132 KLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQ-----MKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 132 ~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~l~~~~~ 191 (207)
+++..... +..-|...|..+|..-...|+..-..++.++ +++.|+..+...-.++-+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88876655 5566788888888888888888877777664 234456556655555544443
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.57 Score=33.67 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=71.6
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-P-GVVTYNILI 152 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li 152 (207)
.|+..+. +.+.|++..|..-|....+.... .....+.-|..++...|++++|..+|..+.+.-.+ | -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4777775 45566799999999888876422 23456677888899999999999998888765221 1 235666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 045498 153 NGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7788889999999999998876
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.45 E-value=0.48 Score=32.06 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTL 101 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m 101 (207)
.+..+...|.+.|+.++|++.|.++......+.. ..+-.+|......+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555555555555555555443322221 22333444444445555444444443
No 246
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.42 E-value=0.46 Score=31.72 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHH
Q 045498 60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLS 137 (207)
Q Consensus 60 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 137 (207)
.++++.+.+.+++|+...+..++..+.+.|++.. +..+.+.++-+|.......+-.+..... ...|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455556667778888888888888888887655 3444455555555444444433332211 223333333333
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 138 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
. .+..++..+...|++-+|.++.+..
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1 4556667777788888887777664
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.37 E-value=0.42 Score=30.92 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=61.0
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
.|+.- ....+.|++++|.+.|+.+..+-. +-....--.++.+|.+.++++.|...+++.++..+.-....|-..+.+
T Consensus 13 ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34433 355678999999999999987732 224567778899999999999999999999998665445566666666
Q ss_pred HHhcC
Q 045498 155 LCKKG 159 (207)
Q Consensus 155 ~~~~~ 159 (207)
++...
T Consensus 92 L~~~~ 96 (142)
T PF13512_consen 92 LSYYE 96 (142)
T ss_pred HHHHH
Confidence 55443
No 248
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.25 E-value=0.019 Score=37.17 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544433444555555555555544444444443
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.24 E-value=0.85 Score=33.69 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=85.2
Q ss_pred HcCCCccHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CcchhhHHHHHhhHhhhcCh----hhHHHHHH
Q 045498 33 KKGICLDVFVYSSLINGLCT--FN----RLKEAVELFDKMVAQGI---TAELVTYNPLIHDNWEKQGR----FSAMALLQ 99 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~----~~a~~~~~ 99 (207)
+.|++.+..+|-+....... .. ...+|..+|+.|++.+. .++..++..++.. ...+. +.+..+|+
T Consensus 90 ~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~ 167 (297)
T PF13170_consen 90 EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQ 167 (297)
T ss_pred HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHH
Confidence 78888888776664443333 22 35678999999998753 3445666666644 33333 45888899
Q ss_pred HHHhCCCCccH--HHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC---HHHHHHHHHHH
Q 045498 100 TLERDKYELNI--EVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGM---IMEADKLLVQM 171 (207)
Q Consensus 100 ~m~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~---~~~a~~~~~~m 171 (207)
.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..+.-.. ...+. .+...++.+.+
T Consensus 168 ~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L 247 (297)
T PF13170_consen 168 KLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDEL 247 (297)
T ss_pred HHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99988876543 333333333322222 447888999999999998887776554332 22222 33444444444
Q ss_pred HH
Q 045498 172 KE 173 (207)
Q Consensus 172 ~~ 173 (207)
.+
T Consensus 248 ~~ 249 (297)
T PF13170_consen 248 KE 249 (297)
T ss_pred hh
Confidence 44
No 250
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.17 E-value=0.97 Score=33.92 Aligned_cols=180 Identities=9% Similarity=0.006 Sum_probs=81.0
Q ss_pred hhhhhhhHHHHH---HcCCCccHHhHHHHH---HHHHhcCChhHHHHHHHHHHhCCCCcchhhH-HHHHhhHhhhcChhh
Q 045498 21 GMCKIREIDSAI---KKGICLDVFVYSSLI---NGLCTFNRLKEAVELFDKMVAQGITAELVTY-NPLIHDNWEKQGRFS 93 (207)
Q Consensus 21 ~~~~~g~~~~a~---~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~ 93 (207)
.+...|++..|+ ...+..|+..|-++. ..|...|+-..|+.=+.+..+. +||-..- -.--..+.+.|..+.
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHH
Confidence 333444555555 333344444444432 2444455555555555544443 3441110 011123455566666
Q ss_pred HHHHHHHHHhCCCCc------------cH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 94 AMALLQTLERDKYEL------------NI--EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 94 a~~~~~~m~~~~~~~------------~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
|..=|+...+....- .. ......+..+.-.|+...|++....+.+..+ -|...|..-..+|...|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcC
Confidence 666666655443210 00 1112223334445566666666666655432 24555555556666666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
++..|..=++...+.. ..|..++.-+-..+-..|+.+.++..++
T Consensus 204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6665555444443331 1233333334444444555554444443
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.48 Score=38.88 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=88.2
Q ss_pred CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498 70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149 (207)
Q Consensus 70 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 149 (207)
|......+.+.-+.-+...|+-.+|.++-.+.+ -|+...|..-+.+++..++|++-+++-+..+ .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 333444566777778888899999998887766 5688999999999999999998877665433 355788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
-.+.+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 8999999999999999988764321 1 577888888888888765
No 252
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.13 E-value=0.32 Score=29.40 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+..+-+..+...++.|++.+..+.+++|-|.+++..|.++++-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666666667777777777777777777777777666554
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.10 E-value=0.083 Score=25.15 Aligned_cols=26 Identities=19% Similarity=-0.028 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
+|..|...|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888744
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.92 Score=33.14 Aligned_cols=148 Identities=17% Similarity=0.094 Sum_probs=95.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (207)
.....+++.+|..+|....... +-+...--.+..++...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888877653 223456667778888888888888888876654322222222333445555555555
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchhHHH
Q 045498 129 ARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 129 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
...+-+..-.. | |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..|+..+.--|.-+-+.
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 55555555543 4 66777788888899999999888776665542 2235566777888777766444443
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.91 E-value=0.73 Score=31.19 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=69.0
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---CCh----h
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV---PGV----V 146 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~---~~~----~ 146 (207)
..+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+...-.+++..+...+.+....--. ++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788899999999999999999999988765543 456778889999999999999888776554222 111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.|..+. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222222 235688888888887664
No 256
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.90 E-value=0.38 Score=28.75 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 137 (207)
.-++.+-+..+...++.|+..+..+.+++|-|.+++..|.++++-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555556666666666666666666666666666666555
No 257
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.68 E-value=0.018 Score=37.26 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=67.8
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+......++..|.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 346777888889999999999988776666788899999999999888888888771 1223446778888889
Q ss_pred CCHHHHHHHHHHHHHc
Q 045498 159 GMIMEADKLLVQMKEK 174 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~ 174 (207)
|.++++.-++.++...
T Consensus 84 ~l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNH 99 (143)
T ss_dssp TSHHHHHHHHHCCTTH
T ss_pred chHHHHHHHHHHcccH
Confidence 9999999988876543
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.62 E-value=1.7 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHH
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVI 187 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~ 187 (207)
+..+.++...|++.++..+++++...= ...+..+|+.++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 334444455555555555555544331 224555555433
No 259
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.59 E-value=1.8 Score=34.31 Aligned_cols=163 Identities=13% Similarity=0.039 Sum_probs=105.6
Q ss_pred CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 35 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
....|-...-++++.+.+..++.-+..+-.+|..-| -+...|..++.+|..+ ..+.-..+|+++.+..+. ++..-.
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 334566677888999999999999999999998876 3677899999999888 667788899988887654 343334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQ 188 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~ 188 (207)
.+..-|-+ ++.+.+..+|......=++ .-...|.-+... -..+.+....+...+... |...-...+..+..
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444444 7777777777766544211 011233333321 134555556655555533 33344455566666
Q ss_pred HHHhcCchhHHHHHHH
Q 045498 189 GFLVKNETDRASSFLK 204 (207)
Q Consensus 189 ~~~~~~~~~~a~~~~~ 204 (207)
-|....++++|.++++
T Consensus 214 ~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 214 KYSENENWTEAIRILK 229 (711)
T ss_pred HhccccCHHHHHHHHH
Confidence 6777777777777665
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.42 E-value=0.78 Score=39.71 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=45.2
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHH
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV--VTYNILINGLC 156 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~ 156 (207)
.+....+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+..++... .+. .+-..|+.-+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 3333444455666666665554321 133456666777777777766665442 121 12255666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 045498 157 KKGMIMEADKLLVQMKE 173 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~ 173 (207)
..+++-+|-++..+...
T Consensus 1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HcccchhHHHHHHHHhc
Confidence 66766666666665543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.31 E-value=0.83 Score=29.21 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=50.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH---HHHHhcCCC
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV---IDGLCRVGR 125 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~ 125 (207)
+....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|+.=+++..+..-.-+...+.+. -..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666777777776665542 344556666666666666666666666665444222233223222 234455566
Q ss_pred HHHHHHHHHHHHhCC
Q 045498 126 WEEARKKLDQLSEKG 140 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g 140 (207)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555554
No 262
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.22 E-value=1.2 Score=30.79 Aligned_cols=124 Identities=11% Similarity=0.097 Sum_probs=74.0
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK- 157 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 157 (207)
....+...|++++|...|+.+...-. +......-.+..++.+.|+++.|...++...+.-+.-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 33466788999999999999987632 223456667888999999999999999998876332222223222222221
Q ss_pred ------------cCCHHHHHHHHHHHHHcCCCCChh-h-----------------HHHHHHHHHhcCchhHHHHHHHhh
Q 045498 158 ------------KGMIMEADKLLVQMKEKGCFPDST-S-----------------FNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 158 ------------~~~~~~a~~~~~~m~~~~~~p~~~-~-----------------~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+...+|...|+.+.+. -|+.. + --.+.+.|.+.|.+..|..-++.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 12335677788877765 23321 1 111345566777777776666554
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.21 E-value=1.2 Score=30.41 Aligned_cols=164 Identities=19% Similarity=0.031 Sum_probs=80.0
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh-hHhhhcChhhHHHHHHHHHhCCC--CccHHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-DNWEKQGRFSAMALLQTLERDKY--ELNIEVYS 114 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~ 114 (207)
.....+......+...+++..+...+.........+ ......... .+...++++.+...+.+...... ......+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 334445555555555556666666666655543222 111222222 45566666666666666543211 01223333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-STSFNTVIQGFLVK 193 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 193 (207)
.....+...++.+.+...+..............+..+...+...++++.+...+...... .|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHc
Confidence 333334555666666666666655421112445555556666666666666666665554 222 23333333333344
Q ss_pred CchhHHHHHHH
Q 045498 194 NETDRASSFLK 204 (207)
Q Consensus 194 ~~~~~a~~~~~ 204 (207)
+..+.+...+.
T Consensus 250 ~~~~~~~~~~~ 260 (291)
T COG0457 250 GRYEEALEALE 260 (291)
T ss_pred CCHHHHHHHHH
Confidence 45555555544
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.17 E-value=0.91 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+....+..+......|+-++..+++.++.+. -.+++.....+..+|.+.|+..++.+++++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444555566666667777777777666542 345666666666777777777776666654
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.94 E-value=0.094 Score=24.67 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHhcCCHHHH
Q 045498 145 VVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~~~~a 164 (207)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.87 E-value=2.6 Score=33.30 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhc
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKK 158 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~ 158 (207)
+-.++.+.|+.++|.+.+++|.+.... -+..+...++.++...+.+.++..++.+..+... +.-...|+..+--+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 455667789999999999999765422 2455788999999999999999999998765422 22344566554433333
Q ss_pred C
Q 045498 159 G 159 (207)
Q Consensus 159 ~ 159 (207)
+
T Consensus 345 ~ 345 (539)
T PF04184_consen 345 G 345 (539)
T ss_pred c
Confidence 3
No 267
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.82 E-value=1.5 Score=30.27 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=62.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCc
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~ 195 (207)
-..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+-+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3456666 778888888888776655655666666665 67889999999887754 347889999999999999999
Q ss_pred hhHHHH
Q 045498 196 TDRASS 201 (207)
Q Consensus 196 ~~~a~~ 201 (207)
++.|.-
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 998853
No 268
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.56 E-value=1.1 Score=31.42 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=55.7
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILING 154 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~ 154 (207)
|.+..++.+.+.+...+++...++-.+.. +.+...-..++.-++-.|+|++|..-++..-... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 55667778888899999999888877764 3355666778888999999999987776555432 23445667766664
Q ss_pred H
Q 045498 155 L 155 (207)
Q Consensus 155 ~ 155 (207)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 269
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.41 E-value=0.32 Score=23.56 Aligned_cols=28 Identities=32% Similarity=0.252 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 146 VTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777888888777777654
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.38 E-value=0.3 Score=23.66 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVA 68 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 68 (207)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34677777777777888888777777653
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=2.5 Score=31.01 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=56.6
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
.....++..+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 344556666666666665554322 3445555666666666666666666665543222122222222333334433333
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
...+-++.-.. +-|...-..+...+...|+.+.|.+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33333333332 114444445555555555555555443
No 272
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.11 E-value=3.1 Score=31.83 Aligned_cols=159 Identities=11% Similarity=-0.038 Sum_probs=95.4
Q ss_pred hhHHHHHhhhhhhhHHHHH------HcC----CCccHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498 14 VYGIRINGMCKIREIDSAI------KKG----ICLDVFVYSSLINGLCT---FNRLKEAVELFDKMVAQGITAELVTYNP 80 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~------~~~----~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 80 (207)
+...++-+|....+++.++ ..- +.-++.+-....-++.+ .|+-++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345556688888888887 111 11122222223334445 7999999999999766666788889888
Q ss_pred HHhhHhh---------hcChhhHHHHHHHHHhCCCCccHHH---HHHHHHHHhcC-CCHHHHHHHH----HHHHhCCC--
Q 045498 81 LIHDNWE---------KQGRFSAMALLQTLERDKYELNIEV---YSLVIDGLCRV-GRWEEARKKL----DQLSEKGL-- 141 (207)
Q Consensus 81 ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~-~~~~~a~~~~----~~~~~~g~-- 141 (207)
+-..|-. ....++|...|.+--+.. |+..+ +.+++...... ..-.+..++. ....++|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8776643 223567888887755443 43322 22222222211 1122333333 22223333
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 142 -VPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 142 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..+--.+..++.++.-.|+.++|.+..+.|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234445678899999999999999999999976
No 273
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.52 E-value=2.5 Score=29.21 Aligned_cols=78 Identities=13% Similarity=-0.165 Sum_probs=55.2
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++-+..+. +-.+|+..+.+|++.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 567777777777765545555555555555 66788888888776654 33678889999999999999988
Q ss_pred HHH
Q 045498 163 EAD 165 (207)
Q Consensus 163 ~a~ 165 (207)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.31 E-value=3.4 Score=30.28 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=83.4
Q ss_pred CCccHHhHHHHHHHHHh-cCC-hhHHHHHHHHHHh-CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-CCCccHH
Q 045498 36 ICLDVFVYSSLINGLCT-FNR-LKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIE 111 (207)
Q Consensus 36 ~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~ 111 (207)
+--|..+...+++.... .+. ...--++.+-+.. .+..++..+...+|..++..+++....++++..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44566777777777766 222 2222233333332 345788889999999999999999999999987665 5667889
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH-----HHhCCCCCChhhHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQ-----LSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~ 155 (207)
.|..+|......|+..-..+++++ +.+.|+..+...-..+-+.+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999999999998877777663 34455555555544444443
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.14 E-value=2.4 Score=28.14 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=27.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498 50 LCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
-.+.++.+++..++.-+.-... .|...++.. ..+...|++++|.++|+++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3445666666666666654321 111222222 2355666666666666666554
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.07 E-value=1.7 Score=26.36 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
..|+.--..|....+. -+..+-+..+....+.|++....+.+++|.+.+++..|.++|+-.+.. +.+....|..+++
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3444444445444433 356666777777888999999999999999999999999999998865 3334447777766
Q ss_pred HH
Q 045498 189 GF 190 (207)
Q Consensus 189 ~~ 190 (207)
-.
T Consensus 88 El 89 (108)
T PF02284_consen 88 EL 89 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.92 E-value=2.8 Score=28.45 Aligned_cols=166 Identities=19% Similarity=0.037 Sum_probs=108.3
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
....+......+...+.+..+...+...... ........+..........+....+...+.........+. .......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence 3566777777778888888888887777652 2344555666666777777778888888887776543331 2222222
Q ss_pred H-HHhcCCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 118 D-GLCRVGRWEEARKKLDQLSEKGL--VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 118 ~-~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
. .+...|+++.+...+++...... ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 67788888888888888755321 12333444444456677888888888888776522113566777777777777
Q ss_pred chhHHHHHHHh
Q 045498 195 ETDRASSFLKK 205 (207)
Q Consensus 195 ~~~~a~~~~~~ 205 (207)
+++.+...+..
T Consensus 217 ~~~~a~~~~~~ 227 (291)
T COG0457 217 KYEEALEYYEK 227 (291)
T ss_pred cHHHHHHHHHH
Confidence 77777777654
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.91 E-value=2.8 Score=28.39 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=91.3
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH-HHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE-VYS 114 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~ 114 (207)
..+...|..-+.. .+.++.++|+.-|.++.+.|..-=+. .--..-......|+...|...|++.-.....|-.. -..
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3345566665554 46788899999999998876431111 11112234567788888999999887765444432 112
Q ss_pred HHH--HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 115 LVI--DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 115 ~li--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
-+= -.+...|.++.+..-++-+-..|-+.....-..|--+-.+.|++.+|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 222 2346778888888888877766544444555667777778999999999999887654444
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.75 E-value=0.7 Score=21.24 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 69 (207)
.+|..+..++...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35667777777777777777777777654
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.74 E-value=0.7 Score=21.24 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555444
No 281
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.70 E-value=2.8 Score=29.48 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDG 119 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~ 119 (207)
|.+.-++.+.+.+...+++...++-.+.+ +.|..+-..++..++-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677778888888888888777764 4556667778888888899988887776654432 23345667776665
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.67 E-value=2.4 Score=34.75 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV-----------TYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.++......++|.+|+.+-+...+. .||+. -|...-.+|-+.|+-.+|..+++++-..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 4556666777778887777766554 33321 2344446667777777777777776554
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.58 E-value=2.5 Score=27.17 Aligned_cols=91 Identities=15% Similarity=-0.097 Sum_probs=68.5
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI---LINGLCKKGM 160 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~~~ 160 (207)
+....|+.+.|++.|.+....- +-....||.-..++--.|+.++|.+=+.+..+.--.-+.....+ --..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999999887764 33778999999999999999999998888776522213333333 3345667889
Q ss_pred HHHHHHHHHHHHHcC
Q 045498 161 IMEADKLLVQMKEKG 175 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~ 175 (207)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999888877665
No 284
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.58 E-value=2.6 Score=27.46 Aligned_cols=81 Identities=11% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGL-----VPGVVTYNILINGLCKKGM-IMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
.+.++...+..++......+++.+..... ..+...|++++.+..+..- ---+..+|..|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34445444555555555555544422100 1244456666666655444 23445556666655566666666666
Q ss_pred HHHHHhc
Q 045498 187 IQGFLVK 193 (207)
Q Consensus 187 ~~~~~~~ 193 (207)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665554
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.56 E-value=4.2 Score=29.77 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=68.2
Q ss_pred cC-ChhHHHHHHHHHHhC--------CCCcch-----hhHHHHHhhHhhhcChh---hHHHHHHHHHhCCCCccHHHHHH
Q 045498 53 FN-RLKEAVELFDKMVAQ--------GITAEL-----VTYNPLIHDNWEKQGRF---SAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 53 ~~-~~~~a~~~~~~m~~~--------~~~~~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
.+ +++.|...+++..+. ...|+. .++..+..++...+..+ +|..+++.+.... +-...++..
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L 126 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLL 126 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHH
Confidence 45 777777777765432 112222 34566666666666544 3555555554332 212445555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL---CKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
-+..+.+.++.+.+.+++.+|...- ......+..++..+ .. .....+...+..+....+.|...
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence 5666666777777777777777652 11334444444444 32 23355666666665555555543
No 286
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=1.7 Score=35.96 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=91.1
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
+.|....--+.+--+..+...|+-.+|.++-.+.+ -||...|-.-+.+++..++|++.+++-+..+ .+.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIG 746 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIG 746 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCC
Confidence 45555556667777888888999999988877664 4788899999999999999998766655433 2456
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
|.-++.+|.+.|+.++|.+.+-+.... .-...+|.+.|++.+|.++--+
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 788899999999999999887654322 1677888899998888776543
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=4.6 Score=29.56 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=95.4
Q ss_pred HhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLK---EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
.++..++.++...+..+ +|..+++.+.+.. +-.+.++-.-++.+.+.++.+++.+++.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 56777888888877655 4556666665442 3335667677888888899999999999998763 22334555555
Q ss_pred HHH---hcCCCHHHHHHHHHHHHhCCCCCChh-hHH-HHH-HHHH--hcC------CHHHHHHHHHHHHHc-CCCCChhh
Q 045498 118 DGL---CRVGRWEEARKKLDQLSEKGLVPGVV-TYN-ILI-NGLC--KKG------MIMEADKLLVQMKEK-GCFPDSTS 182 (207)
Q Consensus 118 ~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~-~li-~~~~--~~~------~~~~a~~~~~~m~~~-~~~p~~~~ 182 (207)
..+ ... ....|...++.+....+.|... ... .++ ..+. +.+ ..+....+++...+. +.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 554 333 3456777777666655555553 111 111 1111 211 145555556644332 33445444
Q ss_pred HHHH-------HHHHHhcCchhHHHHHHH
Q 045498 183 FNTV-------IQGFLVKNETDRASSFLK 204 (207)
Q Consensus 183 ~~~l-------~~~~~~~~~~~~a~~~~~ 204 (207)
-.++ ...+-+.++++.|.++++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3333 233557889999999987
No 288
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.14 E-value=5.1 Score=31.76 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=40.9
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
+...|.++.+...+....+. +.....+...+++...+.|++++|..+-+-|....+. +...........-+.|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34445555555554443322 1223344555555555555555555555555554443 333333333333344455555
Q ss_pred HHHHHHHHH
Q 045498 165 DKLLVQMKE 173 (207)
Q Consensus 165 ~~~~~~m~~ 173 (207)
.-.++++..
T Consensus 411 ~~~wk~~~~ 419 (831)
T PRK15180 411 YHYWKRVLL 419 (831)
T ss_pred HHHHHHHhc
Confidence 555555443
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=5.3 Score=30.12 Aligned_cols=136 Identities=7% Similarity=-0.121 Sum_probs=88.9
Q ss_pred CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH
Q 045498 35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE 111 (207)
Q Consensus 35 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 111 (207)
..+.|..++...=++|.-.|+-+.....+++.... ++|.........--++...|-+++|.+.-++..+.+ +.|..
T Consensus 132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~W 210 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCW 210 (491)
T ss_pred hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchH
Confidence 34445566666667777888888888888887643 334344445555556667888899988888877765 44666
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGL---VPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.-.+....+-..|+..++.++..+-...-- -.-.+-|=...-.+...+.++.|+++|++=
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 777777788888888988888765443211 011122223333445668889999988753
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.06 E-value=4.4 Score=32.11 Aligned_cols=86 Identities=8% Similarity=0.020 Sum_probs=42.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
..|+++.+.+.+....+. +.....+..+++...-+.|++++|..+-..|....++ +..+.......--..|-++++.-
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 445555555555444322 1223345555666666666666666666655555444 33333333223333444555555
Q ss_pred HHHHHHhC
Q 045498 132 KLDQLSEK 139 (207)
Q Consensus 132 ~~~~~~~~ 139 (207)
.|++....
T Consensus 413 ~wk~~~~~ 420 (831)
T PRK15180 413 YWKRVLLL 420 (831)
T ss_pred HHHHHhcc
Confidence 55555544
No 291
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.01 E-value=0.52 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=10.3
Q ss_pred HHHHHHHhcCchhHHHHHHH
Q 045498 185 TVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~ 204 (207)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 292
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.61 E-value=5.2 Score=29.22 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=57.2
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-- 157 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 157 (207)
.=|.+++..++|.++....-+--+.--+.-..+...-|--|.|.++...+.++-..-....-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346777888888887765544333222222334555566788888888888888776665333345567777766654
Q ss_pred ---cCCHHHHHHHH
Q 045498 158 ---KGMIMEADKLL 168 (207)
Q Consensus 158 ---~~~~~~a~~~~ 168 (207)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 48888888876
No 293
>PHA02875 ankyrin repeat protein; Provisional
Probab=90.51 E-value=3.3 Score=32.07 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=27.7
Q ss_pred ccccccchhh--hHHHHHhhhhhhhHHHHH---HcCCCccHH--hHHHHHHHHHhcCChhHHHHHH
Q 045498 5 EQRFKGNFHV--YGIRINGMCKIREIDSAI---KKGICLDVF--VYSSLINGLCTFNRLKEAVELF 63 (207)
Q Consensus 5 ~~~~~p~~~~--~~~ll~~~~~~g~~~~a~---~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 63 (207)
+.|..|+... ..+.+...+..|+.+-+. +.|..|+.. ....-+...+..|+.+.+..++
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 4555555432 233344445556665544 555544422 1122344445566665544444
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.40 E-value=3.8 Score=27.22 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=67.9
Q ss_pred hhHHHHHh---hHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 76 VTYNPLIH---DNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 76 ~~~~~ll~---~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.+.+.||. .-.+.++.+++..++.-+.-.... |...++... .+.+.|+|.+|.++++.+.... |.......|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 34444444 445677889999999988765322 223344433 4678899999999999988763 444455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
+..|.....-..=...-+++.+.+-.|+. ..|++.+....+...|
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccch
Confidence 55554443323233334445665433333 3355555555444443
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=8.8 Score=31.37 Aligned_cols=131 Identities=13% Similarity=-0.025 Sum_probs=74.5
Q ss_pred hHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhH
Q 045498 15 YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 94 (207)
-+.+...+.+.|-.++|+.-...|+. -.....+.|+.+.|.++..+.. +..-|..|-.+...++++..|
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhH
Confidence 34444555555555555544433332 1223335566666655544432 345677777777777777777
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+.|.... -|..|+-.+...|+.+....+-....+.|. .|...-+|...|+++++.+++..-
T Consensus 686 ~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 686 SECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 77776433 245556666666666666666666555553 233444556677888777776543
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.24 E-value=0.96 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455556666666666655544
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.18 E-value=1 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 69 (207)
.|..+-..+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776654
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.90 E-value=1.1 Score=20.38 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444455555555555554443
No 299
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.81 E-value=1.4 Score=33.91 Aligned_cols=129 Identities=12% Similarity=-0.056 Sum_probs=90.6
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHH----hCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----CCC-CCChh
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLE----RDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGL-VPGVV 146 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~ 146 (207)
.|..|-+.|.-.|+++.|+...+.-. +.|-. .....+..+-.++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35556666677788888877665432 22322 2345778888889999999999998876432 222 22455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK-----GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
...+|-..|.-..++++|..++.+-..- ...-...++.+|..+|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6777888888888889999888764321 2234567899999999999999999887654
No 300
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.63 E-value=6 Score=28.44 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=105.8
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcC---CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKG---ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
...|+..+.. .+.|++++|. .+. -+....+--.++.++.+.++++.|+..+++..+....-...-|-.-|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445554443 4678888887 222 23345666677888899999999999999988764332334555555
Q ss_pred hhHhhh-------cChh---hHHHHHHHHHhC----CCCccHHHH------------HHHHHHHhcCCCHHHHHHHHHHH
Q 045498 83 HDNWEK-------QGRF---SAMALLQTLERD----KYELNIEVY------------SLVIDGLCRVGRWEEARKKLDQL 136 (207)
Q Consensus 83 ~~~~~~-------~~~~---~a~~~~~~m~~~----~~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~~~ 136 (207)
.+.+.- .+.. .|..-|+++..+ ...||...- ..+.+-|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555432 2222 244444444433 223332211 23456788999999999999999
Q ss_pred HhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 137 SEKGLVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 137 ~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
.+. ..-+ ....-.+..+|.+.|-.++|.+.-+-+..+ .|+..
T Consensus 194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 887 2222 345666779999999999999988887766 44443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.62 E-value=7.2 Score=29.30 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=94.8
Q ss_pred HHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---C-CcchhhHHHHHhhHhhh
Q 045498 18 RINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---I-TAELVTYNPLIHDNWEK 88 (207)
Q Consensus 18 ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~~ll~~~~~~ 88 (207)
...+..+.|+|+... .....++...|.++... +.++++++....+.....- . ......|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 356777888888765 22223455566666555 7889998888887775431 0 11122333333333333
Q ss_pred cChhhHHHHHHHHHhCCC-Ccc----HHHHHHHHHHHhcCCC---HHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhc
Q 045498 89 QGRFSAMALLQTLERDKY-ELN----IEVYSLVIDGLCRVGR---WEEARKKLDQLSE--KGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~ 158 (207)
....+..++.+-...... ..+ ...|..-+... ..+ ++....+-..+.+ ........+|..++..+.+.
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 333333332222211100 000 11222222221 122 2222222222222 11233556788888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 159 GMIMEADKLLVQMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
|+++.|...+..+...+..+ ++.....-.+..-..|+.++|...+++
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998888754221 334444456666777888888877765
No 302
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.61 E-value=6.5 Score=28.77 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh-
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC- 121 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 121 (207)
...=|.+++..++|.+++...-+-...--+....+....|-.|.+.+++..+.++-..-.+..-.-+...|.++..-|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445788999999999988776665543333445677777789999999998888876554422223345777766654
Q ss_pred ----cCCCHHHHHHHH
Q 045498 122 ----RVGRWEEARKKL 133 (207)
Q Consensus 122 ----~~~~~~~a~~~~ 133 (207)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 469999999888
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.47 E-value=8.9 Score=30.18 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=77.4
Q ss_pred hHhhhcC-hhhHHHHHHHHHhCCCCccHHHHHHHHH-----HHh---cCCCHHHHHHHHHHHHhCCCCCChh----hHHH
Q 045498 84 DNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVID-----GLC---RVGRWEEARKKLDQLSEKGLVPGVV----TYNI 150 (207)
Q Consensus 84 ~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~-----~~~---~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ 150 (207)
-+.+.|. -++|..+++...+-. +....+...+- +|. ....+.+-.++-+-+.+.|++|-.. .-|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 3445555 677888888877642 22222222222 221 2234555555666667778876543 3444
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 151 LIN--GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 151 li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|.. -+...|++.++...-..+.+ +.|++.+|..+.-++....++++|..++.+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 432 33567899988877766655 6899999999999999999999999998753
No 304
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.32 E-value=4.4 Score=26.44 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=62.9
Q ss_pred HhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-----CccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 045498 67 VAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKY-----ELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSE 138 (207)
Q Consensus 67 ~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 138 (207)
.+.+..++. ...++++......+++.....+++.+..... ..+...|++++.+.++... ---+..+|..+.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 3457777777777777777777776632211 2355678888888876666 4446677788887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHH
Q 045498 139 KGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 139 ~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
.+..++..-|..++.++.+....+
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCc
Confidence 778888888888888876654333
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.31 E-value=1.2 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=8.6
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 045498 118 DGLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~ 137 (207)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 306
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.27 E-value=1.2 Score=22.36 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
.|..+|...|+.+.|..++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999988654
No 307
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.06 E-value=2.4 Score=24.40 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
..++-+.|...|+...+.-..|. ..++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655533222 23455566666666666665554
No 308
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=88.90 E-value=4.3 Score=26.51 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 62 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
+.+.+++.|.++++ -=..++..+...++.-.|..+++++.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44455556655553 233455555666666677777777777666655555555555555544
No 309
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=88.80 E-value=1.3 Score=24.13 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
.++...++++.++.. +-|..---.+|.++...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555443 12333344567777777777777777776654
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=14 Score=31.43 Aligned_cols=151 Identities=18% Similarity=0.078 Sum_probs=99.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
.......-++...+...+.-|+.+-+. .+..++. ......-..+.+.|++++|..-|-+-... ++| ..+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 344456667777778888887776543 3332221 22333334556789999998888765543 233 234
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 196 (207)
|.-|....+...-...++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|... .-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChH
Confidence 55666667777788888999999987 88888999999999999998888877654 33321 1134455556666666
Q ss_pred hHHHHH
Q 045498 197 DRASSF 202 (207)
Q Consensus 197 ~~a~~~ 202 (207)
++|..+
T Consensus 480 ~~a~~L 485 (933)
T KOG2114|consen 480 DEAELL 485 (933)
T ss_pred HHHHHH
Confidence 666544
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.40 E-value=3.9 Score=24.63 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 112 VYSLVIDGLCRVG--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 112 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
-|++--..|...- +.-++.+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +..+...|..+++-
T Consensus 7 eF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 7 EFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 3444433444333 45567777777888888999999999999999999999999999988744 22245567666654
No 312
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.30 E-value=4.8 Score=25.59 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+..+-+..+...++.|+..+....++++-+.+++..|.++++-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556666666677777777777777777777777777777766654
No 313
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=87.97 E-value=0.67 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
|.-..|-.+|..|+++|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344445566666666665555 35555543
No 314
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.93 E-value=3.7 Score=28.11 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 122 RVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..++.+......+...+. ...|+...|..++..+...|+.++|.....++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555444444433322 23678888888888888888888888888887765
No 315
>PRK11906 transcriptional regulator; Provisional
Probab=87.66 E-value=12 Score=29.49 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=96.0
Q ss_pred HhH--HHHHHHHHhcC-----ChhHHHHHHHHHHh-CCCCcch-hhHHHHHhhHhh---------hcChhhHHHHHHHHH
Q 045498 41 FVY--SSLINGLCTFN-----RLKEAVELFDKMVA-QGITAEL-VTYNPLIHDNWE---------KQGRFSAMALLQTLE 102 (207)
Q Consensus 41 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~m~ 102 (207)
..| ...+.+..... ..+.|+.+|.+... +...|+- ..|..+-.++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666655522 34677888888872 2334443 233333222211 233455777777777
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-
Q 045498 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST- 181 (207)
Q Consensus 103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~- 181 (207)
+.+ +-|......+-.+..-.++++.|...|++....+.. ...+|........-.|+.++|.+.+++..+. .|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence 776 336777777777777788899999999998887433 3455555556666789999999999986654 34332
Q ss_pred --hHHHHHHHHHhcCchhHHHHHH
Q 045498 182 --SFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 182 --~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
.....+..|+..+ ++.|.+++
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHH
Confidence 2233333454443 55665554
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.37 E-value=7.1 Score=26.51 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=89.2
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh-hHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV-TYNIL 151 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l 151 (207)
+...|...++ +...+..++|+.-|..+.+.|...-+.. --.........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4456666665 4566778899999999988876532221 1223345678899999999999988765444433 12222
Q ss_pred H--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 152 I--NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 152 i--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
= ..+...|.+++...-.+-+-..+-+--...-..|-.+--+.|++.+|.++|.+.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 2 234578889988888887766554444455566777778999999999998764
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=15 Score=30.14 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=72.0
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
...+.|+.+.|.++..+.. +..-|..|-++....+++..|.+.|..... |..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3456777888877765532 556789999999999999999999886553 5567777777888777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
...+-+...+.|.. +.-..+|...|+++++.+++.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 77777777776542 233445667788888877764
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.27 E-value=18 Score=32.12 Aligned_cols=117 Identities=17% Similarity=0.063 Sum_probs=72.2
Q ss_pred CccHHhHHHHHH----HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 37 CLDVFVYSSLIN----GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 37 ~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
+|+...+..... .+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+..++.....+ -..+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHH
Confidence 455555444443 34455777777777765422 234677888899999998888876532211 1122
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
-..|+.-+...++.-+|-++..+..+. ....+..+++...|++|..+....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 266777888888888888888776653 223344455556666666655443
No 319
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.19 E-value=2.7 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
-+.|-+.++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666666666666666666655543
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.01 E-value=1.9 Score=19.61 Aligned_cols=27 Identities=22% Similarity=0.038 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666665544
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.97 E-value=4.6 Score=29.78 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=50.2
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhh
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVT 147 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 147 (207)
+++...+.|..+|.+.+|.++.++....+ +.+...+-.++..++..|+--.+.+-++.+.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45566678888888888888888887765 55777788888888888887667666665543 355544433
No 322
>PRK11906 transcriptional regulator; Provisional
Probab=86.27 E-value=15 Score=29.05 Aligned_cols=113 Identities=13% Similarity=-0.007 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 134 (207)
...+|.++-++..+.+ +-|......+-.+....++++.+...|++....+.. ...+|...-..+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677777777765 567778888888788888899999999998876522 34556555566677899999999999
Q ss_pred HHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 135 QLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 135 ~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
+..+..+. .-.......+..|+.. -++.+.++|-.
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 97765321 1122333444566655 45667766643
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.11 E-value=7.5 Score=25.52 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=29.2
Q ss_pred hcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498 52 TFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 105 (207)
..++++++..+++.|.-... .+...+|... .+...|+|++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 35667777777776654321 1122233333 3566677777777777766654
No 324
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.07 E-value=3.2 Score=21.23 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=16.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 325
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.64 E-value=7.5 Score=25.10 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 176 (207)
+...++..++.+.+.|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.=+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3345566778888888888888888887653 256777888888899999999988888888877765
No 326
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.47 E-value=4 Score=31.62 Aligned_cols=123 Identities=16% Similarity=0.027 Sum_probs=75.1
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-Ccchh
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GI-TAELV 76 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 76 (207)
.|..|-+.|.-.|+++.|+ +-|-+. ....+..+-++++-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555556666677777776 222222 2345667777777788888888777765322 11 12234
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCC-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDK-----YELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 136 (207)
.+-+|-+.|.-..++.+|+..+.+-.... ..-....|.++-.+|...|..++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55667777777777777777766532211 1113457778888888888888777766544
No 327
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.19 E-value=4.1 Score=22.15 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
.-.+|.+|...|++++|.+.++.+..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456666667777777666665544
No 328
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.05 E-value=5.8 Score=23.32 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. . .+..|...+.++...|.-+-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhh
Confidence 33445555555432 33223322222224455555555555555 3 12335555555555554433
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.03 E-value=5.4 Score=22.96 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=22.4
Q ss_pred hhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKK 132 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~ 132 (207)
..++.++|+..|....+.-..+. -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444322221 13444555555555555555544
No 330
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=84.89 E-value=9.5 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.025 Sum_probs=37.0
Q ss_pred HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498 101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
+.+.|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|-..-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 44556554442 23444454445556677777777777776666666666666666666554
No 331
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=84.44 E-value=9 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
..+.+.|++++.. -..++..+.+.+..-.|.++++++.+.+...+..|-..-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443322 22333444444444445555555555444444444444444444444
No 332
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.34 E-value=7.1 Score=23.75 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=60.3
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
...++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+.. ..||...|-+|-. .+.|.-+++..-+
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 3567888888888766522 3333344467788999999998887765 3688888877765 4677777777777
Q ss_pred HHHHHcCCCCChhhHH
Q 045498 169 VQMKEKGCFPDSTSFN 184 (207)
Q Consensus 169 ~~m~~~~~~p~~~~~~ 184 (207)
.+|...| .|-...|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777665 34444443
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.03 E-value=4.1 Score=30.78 Aligned_cols=48 Identities=8% Similarity=-0.106 Sum_probs=26.7
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 132 (207)
-|.+.|.+++|+..|..-.... +.+.+++..-..+|.+...+..|+.=
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHh
Confidence 3455666666666666544332 12555666666666666666555443
No 334
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.66 E-value=1.4 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3444566666666666655554 5555443
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.64 E-value=26 Score=33.68 Aligned_cols=148 Identities=10% Similarity=-0.005 Sum_probs=90.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 45 SLINGLCTFNRLKEAVELFDKM----VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
.+-.+-.+.+.+.+|+..+++- ++.. ....-|..+...|...+++|.+..+...... .|+ ...-|--.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3444556778899999888883 3221 1223455555589999999998887764221 222 23444556
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCchhHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT-VIQGFLVKNETDRA 199 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a 199 (207)
...|+|..|...|+.+...+.. ...+++.++......|.++.+....+-.... ..+....++. =+.+--+.++||..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999987522 3667887777777777777777655544433 1222222222 22233455565554
Q ss_pred HHH
Q 045498 200 SSF 202 (207)
Q Consensus 200 ~~~ 202 (207)
...
T Consensus 1538 e~~ 1540 (2382)
T KOG0890|consen 1538 ESY 1540 (2382)
T ss_pred hhh
Confidence 443
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=19 Score=31.12 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhhhcCh--hhHHHHHHHHHhCCCCccHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
.-|..|+..|...|+.++|+++|.+..+.. ..--..-+.-++.-+.+.+.. +.+++.-+...+....-...++..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 348889999999999999999999987632 111112233355555555544 555555555554432211112221
Q ss_pred ------------HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 116 ------------VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 116 ------------li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
-+-.|.+....+-+...++.+....-.++..-.+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 233455666777888888888877666677777788877764
No 337
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=82.50 E-value=3.8 Score=30.18 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=25.7
Q ss_pred ccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH
Q 045498 38 LDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY 78 (207)
Q Consensus 38 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 78 (207)
|+..+ |+..|....+.|++++|++++++.++.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44433 556777777777777777777777777654333333
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.47 E-value=10 Score=24.17 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHhCCCCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 101 LERDKYELNIEVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 101 m~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
--.+|.+ +..-|+.--.-|...... -+..+-+..+..-.+.|++.....-++++-+.+++..|.++|+-++.. +.+
T Consensus 39 ~~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~ 116 (149)
T KOG4077|consen 39 SMEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGA 116 (149)
T ss_pred HhhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-ccc
Confidence 3344544 555566555555543332 345566667777788899999999999999999999999999988765 333
Q ss_pred ChhhHHHHHH
Q 045498 179 DSTSFNTVIQ 188 (207)
Q Consensus 179 ~~~~~~~l~~ 188 (207)
-...|-.+++
T Consensus 117 ~k~~Y~y~v~ 126 (149)
T KOG4077|consen 117 QKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHHH
Confidence 3445655554
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.23 E-value=20 Score=27.33 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=55.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (207)
+.|.+.|++++|+..|..-.... +-+.+++..-..+|.+...+..|..=.......+ ..-+-.|+.-..+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34677889999999998776542 3377788777788888888876665555444332 112223444344434445566
Q ss_pred HHHHHHHHHHhC
Q 045498 128 EARKKLDQLSEK 139 (207)
Q Consensus 128 ~a~~~~~~~~~~ 139 (207)
+|.+=++...+.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 666655555554
No 340
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.07 E-value=12 Score=26.92 Aligned_cols=60 Identities=10% Similarity=-0.068 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKE----KG-CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344667888999999999999998853 23 2345677888889999999999988776554
No 341
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.06 E-value=14 Score=25.33 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.|+..+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777766654
No 342
>PRK09462 fur ferric uptake regulator; Provisional
Probab=82.06 E-value=12 Score=24.50 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHhCCCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 101 LERDKYELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 101 m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
+.+.|+.++. .-..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444554433 223333333332 34556666666666655555555555555555555543
No 343
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.94 E-value=24 Score=30.58 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=76.5
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCC---CCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHH--
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYN-- 149 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~-- 149 (207)
-|..|+..|...|+.++|+++|.+..... -..-...+--++..+.+.+.. +.+++.-+...+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48889999999999999999999987632 111123344467777777665 66666666665553221111221
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498 150 ----------ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 150 ----------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 192 (207)
.-+-.|......+.+..+++.+....-.++..-.+.++.-|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 2334456677778888888888877666677777777777754
No 344
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=81.46 E-value=6.2 Score=21.76 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
|+...++.++...+...-++++...+.+..+.|. .+..+|.--++.+++..-
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQF 57 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666553 345555555555554433
No 345
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=81.38 E-value=17 Score=27.12 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----------cCchhHH
Q 045498 130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----------KNETDRA 199 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a 199 (207)
.++|+.+.+.++.|.-.++..+.-.+.+.=.+.++..+++.+... +.-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567888888888888888888877788888888888888888753 2335666665553 3566665
Q ss_pred HHHHH
Q 045498 200 SSFLK 204 (207)
Q Consensus 200 ~~~~~ 204 (207)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.37 E-value=19 Score=26.64 Aligned_cols=127 Identities=18% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhh-------HHHHHhhHhhhcChhhHHHHHHHH----HhCCCCccHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVT-------YNPLIHDNWEKQGRFSAMALLQTL----ERDKYELNIEVYS 114 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~ 114 (207)
+.+-..+.+++++|+..+.++...|+..|..+ ...+...|.+.|+.....+..... ....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556688999999999999999988777654 445778888888876644444322 2222122344556
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 115 LVIDGLCRV-GRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 115 ~li~~~~~~-~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
+++.-+... ..++....+.....+.-.+ .....-.-++..+.+.|.+.+|..+...+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 666666443 3355555554444332111 111223457788899999999988766543
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.35 E-value=20 Score=26.67 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
++...+.|..+|.+.+|.++.++....+ +.+...+..|+..+...|+--++.+-++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 3445566677777777777777766552 4466667777777777776444444433
No 348
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.90 E-value=4.5 Score=29.84 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
|+..|..-.+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 346666666666666666666666666655333333
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.59 E-value=14 Score=24.36 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=41.6
Q ss_pred hhHHHHHhh---HhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 76 VTYNPLIHD---NWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 76 ~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
.+.+.||.. -....+.+++..+++.|.-.... +...+|... .+...|+|++|.+++++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 344444443 34577888888888888754322 234445444 4567889999999999988874
No 350
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=80.23 E-value=9.6 Score=22.36 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 61 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
++|+-....|+..|+.+|..++.....+=.++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666777777766666655556666666666554
No 351
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=80.05 E-value=8 Score=21.35 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=19.0
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
..++.++...++..-.+++...+.+..+.|. .+..+|---++.+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444444444444444444444444444442 2333343333333
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.92 E-value=30 Score=27.96 Aligned_cols=99 Identities=10% Similarity=-0.093 Sum_probs=77.4
Q ss_pred CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 71 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
.+.|....-+++..+..+..+.-+..+..+|...| -+...|..++.+|... .-+.-..+|+++.+..+. |.+.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 35677788888899999999999999999998876 3667888899999888 557888889988887664 5555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
|..-|-+ ++...+..+|......
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH
Confidence 6666655 7888888888887765
No 353
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.56 E-value=17 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.5
Q ss_pred HHhcCCCHHHHHHHHHHHHh
Q 045498 119 GLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~ 138 (207)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444444455444444444
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.05 E-value=4 Score=17.29 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVA 68 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 68 (207)
+|..+...+...++++.|...|.+..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555666666777777776666554
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.69 E-value=19 Score=24.94 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH--HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH--
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP--LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL-- 115 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-- 115 (207)
+..|..++.... .+.+ +.....+.+....-.....++.. +-+.+...+++++|...++..... |....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555443 2222 44444444444321112222222 234556677777777777765533 12222322
Q ss_pred ---HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 116 ---VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 116 ---li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+.+.....|.++.|..+++.....+.. ......--..+...|+-++|..-|+...+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334556667777777777766554322 1122223366667777777777777776664
No 356
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.14 E-value=30 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVA 68 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 68 (207)
...+...+...+..|+|+.|+++++.-+.
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 45667777777777888877777776554
No 357
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=77.62 E-value=8.3 Score=24.06 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444444455555555555554444444444444444443
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.48 E-value=38 Score=27.75 Aligned_cols=119 Identities=13% Similarity=-0.016 Sum_probs=73.9
Q ss_pred HHhcCChhHHHHHHHHHHh-------CCCCcchhhHHHHHhhHhhhc-----ChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 50 LCTFNRLKEAVELFDKMVA-------QGITAELVTYNPLIHDNWEKQ-----GRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
+....+.+.|+..|+...+ .| .+.....+-.+|.+.. +.+.|..++....+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3356788888888888866 44 2234555555555532 56668888888887773 3544433333
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHcC
Q 045498 118 DGLCR-VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC----KKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 118 ~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~ 175 (207)
.-... ..+...|.+.|...-..|.. ..+-.+..+|. ...+...|..++++.-+.|
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 33333 35678899999988888743 22222222222 3457778888888887776
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.88 E-value=33 Score=26.65 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHH---HcCCCccHHh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh--hHHHHHhhHhhhcChhh
Q 045498 21 GMCKIREIDSAI---KKGICLDVFV--YSSLINGLCTFNRLKEAVELFDKMVAQGITAELV--TYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 21 ~~~~~g~~~~a~---~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 93 (207)
..++.|+.+-+. +.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.
T Consensus 8 ~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 344556666555 6777766433 334455556677765 344445555544422 11233445556677666
Q ss_pred HHHHHH
Q 045498 94 AMALLQ 99 (207)
Q Consensus 94 a~~~~~ 99 (207)
+..+++
T Consensus 84 v~~Ll~ 89 (413)
T PHA02875 84 VEELLD 89 (413)
T ss_pred HHHHHH
Confidence 555543
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.73 E-value=23 Score=24.83 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=39.3
Q ss_pred hhhcChhhHHHHHHHHHhCCCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 86 WEKQGRFSAMALLQTLERDKYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
..+|++++|..-|.+....-.+. -...|..-..++.+.+.++.|.+--...++.+.. .....-.-..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhH
Confidence 34555555555555544432111 1223333344555555555555554444444321 111222223345555555
Q ss_pred HHHHHHHHHHHHc
Q 045498 162 MEADKLLVQMKEK 174 (207)
Q Consensus 162 ~~a~~~~~~m~~~ 174 (207)
++|+.=|+.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.57 E-value=15 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=15.2
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLER 103 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 103 (207)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555666666666666655544
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.45 E-value=24 Score=24.79 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLV 192 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 192 (207)
.-+.+.|++++|..-|...+..-.... ...|..-..++.+.+.++.|..-.....+.+ | ...+...=..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 346789999999999998887632211 2345555567788899999988888777653 3 22334444557888
Q ss_pred cCchhHHHHHHHhh
Q 045498 193 KNETDRASSFLKKN 206 (207)
Q Consensus 193 ~~~~~~a~~~~~~m 206 (207)
...+++|++=|++.
T Consensus 181 ~ek~eealeDyKki 194 (271)
T KOG4234|consen 181 MEKYEEALEDYKKI 194 (271)
T ss_pred hhhHHHHHHHHHHH
Confidence 88899998877764
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.86 E-value=23 Score=24.33 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCCh--h-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498 126 WEEARKKLDQLSEKGLVPGV--V-----TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~--~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 192 (207)
++.|..+|+.+.+.-..|.. . .-...+-.|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 45677777766655322210 1 1234567789999999999999998874 344444444444333
No 364
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=75.86 E-value=35 Score=28.66 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCcchhhHHHHHhhHhhhcChhh------HHHHHHHHHhCCCCccHHHHHHH
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQ--GITAELVTYNPLIHDNWEKQGRFS------AMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
+|+.+|...|++-.+.++++.+... |-+.=...+|..|+...+.|.++- +.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888888888888888877643 222233456777777777776643 333333322 34466677777
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 045498 117 IDGLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~ 137 (207)
+.+-..--+-....-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 666544333333333444433
No 365
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=75.52 E-value=11 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33344444444444444444444444444444443
No 366
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=75.41 E-value=22 Score=23.92 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=33.4
Q ss_pred HHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 66 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
++..|+.++..= ..++..+....+.-.|.++++.+.+.+..++..|..-.+..+...|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555444322 233344444455566777777777766666666666666666665543
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.34 E-value=14 Score=21.75 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++-..|+-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3444444444422 33333333333334455555555555555 322 2455555555555544433
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=28 Score=25.05 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=14.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 045498 156 CKKGMIMEADKLLVQMKEKGCF 177 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~~~ 177 (207)
+..+++.+|..+|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777777777777665443
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.69 E-value=17 Score=22.41 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=51.7
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
.....++|..|.+.+...+. ....+--+-+..+.+.|++++|. .. ......||...|-+|-. .+.|--+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 34567889999998888764 34444455567788999999982 11 11223567777766654 57888888888
Q ss_pred HHHHHHHcC
Q 045498 167 LLVQMKEKG 175 (207)
Q Consensus 167 ~~~~m~~~~ 175 (207)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888776654
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.67 E-value=38 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchh--hHHHHHhhHh--hhcChhhHHHHHHHHHhC
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELV--TYNPLIHDNW--EKQGRFSAMALLQTLERD 104 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~m~~~ 104 (207)
...+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 666555 3444444443 345677899988887654
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.63 E-value=32 Score=25.39 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=87.7
Q ss_pred HcCCCccHHhHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhC---C
Q 045498 33 KKGICLDVFVYSSLING-LCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERD---K 105 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~ 105 (207)
+++..||+..=|---+. -.+..++++|+.-|++..+....-.. .....+++...+.+++++....+.++... .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34455555443322221 12344677777777776553211122 23445667777777777777766666422 1
Q ss_pred C--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 045498 106 Y--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF- 177 (207)
Q Consensus 106 ~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 177 (207)
+ ..+....|++++..+...+.+...++++.-.+. +-..-..|-+-|-..|...+.+.+..++++++...-..
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 113345566666666666655555555433221 11112234455556666666777777777666543100
Q ss_pred ----------CChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 178 ----------PDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 178 ----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
--...|..=|+.|....+-.+...++++
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQ 216 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHH
Confidence 0123455556666655555554444443
No 372
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=74.26 E-value=62 Score=28.59 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHhhhhhhhHHHHH----HcCCCc------cHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcchhhHHHHH----
Q 045498 18 RINGMCKIREIDSAI----KKGICL------DVFVYSSLINGLCT-FNRLKEAVELFDKMVAQGITAELVTYNPLI---- 82 (207)
Q Consensus 18 ll~~~~~~g~~~~a~----~~~~~~------~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll---- 82 (207)
.+..+...+++.+|. +..+.. ++..|-.=+..+.+ -++.+..-.++..+.+.++.- ..|....
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~~ 777 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPSS 777 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--ccccccccccc
Confidence 345566677777777 333322 34444443444443 355555555555555544322 1222222
Q ss_pred --------hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhC
Q 045498 83 --------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG--RWEEARKKLDQLSEK 139 (207)
Q Consensus 83 --------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~ 139 (207)
......++....-..+....+. ..-...-+..++.+|++.+ +++.|+..+.++.+.
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1111222333333333332221 1223445678889999988 899999999988865
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.65 E-value=34 Score=25.26 Aligned_cols=137 Identities=10% Similarity=0.029 Sum_probs=82.8
Q ss_pred CCCCcchhhHHHHHhhH-hhhcChhhHHHHHHHHHhCCCCccHH---HHHHHHHHHhcCCCHHHHHHHHHHHHhC---C-
Q 045498 69 QGITAELVTYNPLIHDN-WEKQGRFSAMALLQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEK---G- 140 (207)
Q Consensus 69 ~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~---g- 140 (207)
++-.||...=|..-++- .+..++++|+.-|.+..+...+-... ..-.+|....+.+++++..+.++++..- -
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34466655444333222 23447888999999887654333333 4456789999999999999988887532 1
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 141 -LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-----GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 141 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
-.-+..+.|+++..-....+.+....+++.-.+. +-..--.|-.-|-..|...+++.+..+++++
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 1235667788888777777777666666543321 1111112334455566666666666666554
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.50 E-value=16 Score=21.60 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=40.5
Q ss_pred HhcCCCHHHHHHHHHHH----HhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 045498 120 LCRVGRWEEARKKLDQL----SEKGLVPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQG 189 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~----~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~ 189 (207)
..+.|++..|.+-+.+. ...+.... ....-.+.......|++++|...+++..+.. -.-|..+....+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 35778888886554443 33333221 1222334456677899999999999887753 33344444444333
No 375
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=73.42 E-value=12 Score=23.10 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444444555566666666666665556666666666666655443
No 376
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.22 E-value=33 Score=24.92 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVA 68 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 68 (207)
...|.---.+|....++++|...+.+..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34577777788889999999888777653
No 377
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=72.95 E-value=36 Score=25.23 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=57.7
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM 162 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 162 (207)
....+..+.....+.+..+. ....-...+..+...|++..|.+++.+..+. .. ....|+++=.. ..++.
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHHHH
Confidence 33444444444445444443 3344556677778889999999988876653 00 11111111111 11223
Q ss_pred HHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 163 EADKLLVQMKEK-----GCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 163 ~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
+.......+.+. -...|+..|..++.+|.-.|+...+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 333333332221 12468888999999998888776655
No 378
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.57 E-value=44 Score=26.14 Aligned_cols=168 Identities=13% Similarity=0.010 Sum_probs=85.0
Q ss_pred hhhHHHHHhhhhhhhHHHHHHc---------CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---------CCCcc
Q 045498 13 HVYGIRINGMCKIREIDSAIKK---------GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ---------GITAE 74 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~~~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~~~ 74 (207)
..+.-+-+.|..+|+++.|.+. ..+-....|-.+|..-.-.|+|.....+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3556677778888888888811 11223344555666666678887777777766543 12223
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHH-hC-C----CCccHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHhCCCCC
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLE-RD-K----YELNIEVYSLVIDGLCRVGRWEEARKK-----LDQLSEKGLVP 143 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~-----~~~~~~~g~~~ 143 (207)
...+..+.+.+.+ ++..|...|-... .. + +.|...+....+.+++-.++-+.-..+ |+.+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 3333333333332 3444333332211 11 1 234444444555555555443332222 3333332
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHH
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEK-----GCFPDSTSFNTVIQ 188 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~ 188 (207)
.+.....+...| .+++..+.+++++++.. -+.|.+.+...+|+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 333444444443 45677777777777654 24566666655554
No 379
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.09 E-value=40 Score=25.05 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhCCC----CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 56 LKEAVELFDKMVAQGI----TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
.+.|.+.|+.....+. ..++..-..++....+.|+.+....+++..... .+...-..++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888876422 345556666777777777766656666555543 367778899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHH----HHHcCCCCChhhHHHHHHH----HHhcCchhHHHH
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMI--MEADKLLVQ----MKEKGCFPDSTSFNTVIQG----FLVKNETDRASS 201 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~----m~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~~ 201 (207)
+++.....+..++.. ...++.++...+.. +.+++.+.. +.+. ..++......++.. ++...+.++..+
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999988864222333 34444444433333 666666653 2222 23333244455554 344555666666
Q ss_pred HH
Q 045498 202 FL 203 (207)
Q Consensus 202 ~~ 203 (207)
++
T Consensus 301 f~ 302 (324)
T PF11838_consen 301 FF 302 (324)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 380
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=49 Score=26.00 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=62.7
Q ss_pred HHhcCChhHHHHHHHHHHhC---CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 50 LCTFNRLKEAVELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
..+.|.+..|.+.|.+.+.. ++.|+...|-..-.+..+.|+.++|+.--++..+.+.. -...+..-..++.-.++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 45678999999999988764 34555566666677788889999998888877765311 223344444566667889
Q ss_pred HHHHHHHHHHHhC
Q 045498 127 EEARKKLDQLSEK 139 (207)
Q Consensus 127 ~~a~~~~~~~~~~ 139 (207)
++|.+-++...+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888876655
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.86 E-value=27 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=30.1
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
+...-.-++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+...+..+.+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455677778888888888888877655432 234577777788888888777766665553
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.73 E-value=53 Score=27.21 Aligned_cols=103 Identities=11% Similarity=-0.076 Sum_probs=63.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
-.|+...|.+.+...........-+..-.|.+...+.|..-.|..++.+..... ....-++..+-+++....++++|.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777777777666544322222344445555566666667777776665554 2344567777788888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
-|++..+...+ +.+.-+.|...-|
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 88887776443 4445555544333
No 383
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.70 E-value=43 Score=25.19 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
.++++.+.+.++.|.-..|.-+.-.+...=.+.++..+|+.+.+ |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 56788888889999988888887788888889999999999987 44447777777764
No 384
>PRK09462 fur ferric uptake regulator; Provisional
Probab=70.43 E-value=27 Score=22.79 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHhCCCCcchhhHHHHHhhHhhh-cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 66 MVAQGITAELVTYNPLIHDNWEK-QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 66 m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
+.+.|+.++.. =..++..+... +..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44556555532 23334444443 35667888888887777666767766667777766643
No 385
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.12 E-value=44 Score=25.08 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP---GVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
....+|..+...+-+.|.++.|...+..+...+... ++...-.-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999998888754222 334555556667778888899888888776
No 386
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.65 E-value=13 Score=23.16 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 91 (207)
-..++..+.+.+..-.|.++++.+.+.+...+..|.---|+.+...|-.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3456777777777889999999999888777777666666666666543
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.58 E-value=49 Score=27.85 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=63.2
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhC--CCCccHHHHHHHHHHHhcCCCHH------HHHHHHHHHHhCCCCCChhhHHHH
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERD--KYELNIEVYSLVIDGLCRVGRWE------EARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
+|+.+|..+|++..+.++++.+... |-+.-...+|..|+.+.+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999988654 33334567888899999998754 3444444444 45588888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045498 152 INGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+.+-.+.-+-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8877664444444445555544
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.94 E-value=46 Score=24.83 Aligned_cols=125 Identities=9% Similarity=-0.027 Sum_probs=79.6
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCChhhHH
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPGVVTYN 149 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 149 (207)
+.+-..+.++.++|...+.++...|+..+. .+...+...|.+.|+.....++.....+. .-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445567788999999999999999876554 35566778889999887766655443322 1122344566
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 150 ILINGLCKK-GMIMEADKLLVQMKEKGCFPD-----STSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 150 ~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+|+.-+... ..++....+.....+...+-+ ...=.-++..+-+.|.+.+|..+++.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666443 345666666555544321111 12233477788899999999887764
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.82 E-value=24 Score=21.58 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
..++|.-+-+.+...+-. ....--+=+..+.+.|++++|..+.+.+ ..||...|.+|-.. +.|..+.+..-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHH
Confidence 357777777777776422 2222223346678999999999987765 57899888777544 45554444433
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.39 E-value=42 Score=24.21 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=49.4
Q ss_pred HcCCCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCcchhhHHHHHhhHhhh-cChhhHHHHHHHHHhC-
Q 045498 33 KKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQ----G-ITAELVTYNPLIHDNWEK-QGRFSAMALLQTLERD- 104 (207)
Q Consensus 33 ~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~- 104 (207)
+.|.+-|..+ |...-++ .+..++++|...++...+- | +..-...+-.+-..|-.. .+++.|+..|+..-+.
T Consensus 66 k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4555555443 4333333 4455777776666644321 1 000001111222233222 3455566655554321
Q ss_pred -CCCccHHH--HH-HHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498 105 -KYELNIEV--YS-LVIDGLCRVGRWEEARKKLDQLSEKGL 141 (207)
Q Consensus 105 -~~~~~~~~--~~-~li~~~~~~~~~~~a~~~~~~~~~~g~ 141 (207)
|-+.+... +. -+...-+..+++.+|.++|++.....+
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111 22 222223566788899999998877643
No 391
>PRK09857 putative transposase; Provisional
Probab=68.01 E-value=47 Score=24.67 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD 179 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 179 (207)
-+..++....+.++.++..++++.+.+. ........-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 208 ~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 208 QIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3556666667778777778888777665 233444555667777777877888888999998887655
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.99 E-value=26 Score=21.60 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777777777777777766
No 393
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=67.66 E-value=46 Score=24.75 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=48.7
Q ss_pred ccccchhhhHHHHHhhhhhhhHHHHHHcCCCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 7 RFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 7 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
|...+-..+..++..|. .|+..|-.|++.+ |.++...= ...-+++|...|.......+.+...+...|...+
T Consensus 2 G~~vtG~~L~~L~~~Yv------~aIn~G~vP~iesa~~~~~e~e-~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H 74 (297)
T PF02841_consen 2 GITVTGPMLAELVKSYV------DAINSGSVPCIESAWQAVAEAE-NRAAVEKAVEHYEEQMEQRVKLPTETLEELLELH 74 (297)
T ss_dssp SEB-BHHHHHHHHHHHH------HHHHTTS--BHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHH
T ss_pred CcccccHHHHHHHHHHH------HHHhCCCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 55566666777777665 4667788888644 55555442 2345788898888854433233334566666655
Q ss_pred hhhcChhhHHHHHHH
Q 045498 86 WEKQGRFSAMALLQT 100 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~ 100 (207)
... ...|..+|..
T Consensus 75 ~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 75 EQC--EKEALEVFMK 87 (297)
T ss_dssp HHH--HHHHHHHHHH
T ss_pred HHH--HHHHHHHHHH
Confidence 443 4567777764
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=66.92 E-value=28 Score=21.67 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=9.8
Q ss_pred hHhhhcChhhHHHHHHHHHhCC
Q 045498 84 DNWEKQGRFSAMALLQTLERDK 105 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~ 105 (207)
.+.+....++|+++++.|.++|
T Consensus 70 ~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 70 YLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHhCcHHHHHHHHHHHHHhC
Confidence 3333444444444444444444
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.89 E-value=33 Score=28.28 Aligned_cols=53 Identities=21% Similarity=-0.004 Sum_probs=23.4
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.+.|...+|..++.+...... ..+-++..+-.++....++++|.+.|++..+.
T Consensus 653 ~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 653 IHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 333344444444444433321 12334444445555555555555555554443
No 396
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.78 E-value=41 Score=23.43 Aligned_cols=124 Identities=14% Similarity=0.054 Sum_probs=72.4
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH--HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH-----
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY----- 148 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----- 148 (207)
..|..++.... .+.+ +.......+........-.++. .+...+...|++++|..-++..... |....+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 44555555443 2222 4444555555443221112222 2346677888888888888877654 222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-.|.+...+.|.+|+|...++...+.+. .......--+.+...|+-++|+.-|++.
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 3344666778888888888887766533 2233344456778888888888877653
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.14 E-value=47 Score=23.90 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK----G-LVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
..-..+..-|.+.|++++|.++++.+... | ..+...+...+..++.+.|+.+....+.-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34446678889999999999999987422 2 23455667777888888999988887765554
No 398
>PRK09857 putative transposase; Provisional
Probab=66.11 E-value=52 Score=24.46 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=45.2
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 144 (207)
+..+++-....++.++..++++.+.+.. +......-++..-+.+.|.-+++.++.+.|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 5566655566777777777877776652 33333444566666677777788889999999887654
No 399
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=65.61 E-value=20 Score=19.50 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHHHH
Q 045498 123 VGRWEEARKKLDQL 136 (207)
Q Consensus 123 ~~~~~~a~~~~~~~ 136 (207)
.|++-+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33333333333333
No 400
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=64.93 E-value=64 Score=25.03 Aligned_cols=158 Identities=15% Similarity=0.016 Sum_probs=91.3
Q ss_pred hhHHHHHhhhhhhhHHHHH--------HcCCCc---cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----Ccchhh
Q 045498 14 VYGIRINGMCKIREIDSAI--------KKGICL---DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-----TAELVT 77 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~--------~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~ 77 (207)
.|-.+-.++.+..++.+++ -.|..| .-...-++-.++.-.+.++++++.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3445555666666666666 122222 112233456667777889999999998765321 122356
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHH----hCCCCccH------HHHHHHHHHHhcCCCHHHHHHHHHHHH----hCCCCC
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLE----RDKYELNI------EVYSLVIDGLCRVGRWEEARKKLDQLS----EKGLVP 143 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~----~~g~~~ 143 (207)
+-.|-..|.+..+.++|.-+..+.. ..++. |. .....+.-++-..|++.+|.+.-++.. ..|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7788888888888888766555432 22322 21 122233345566777777766655543 334222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 144 -GVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 144 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.....-.+.+.|-..|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12234456677888898888887776543
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.80 E-value=61 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045498 153 NGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~ 173 (207)
..+...|+..++.+.+++.++
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 344444555555555554444
No 402
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=64.33 E-value=30 Score=21.10 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 045498 44 SSLINGLCTFNRLKEAVELFDKM 66 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m 66 (207)
..++.-|...++.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455666667777777777665
No 403
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.24 E-value=63 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHH
Q 045498 144 GVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a 164 (207)
...+|..|+.+++..|+.+..
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 344678888888888876654
No 404
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.00 E-value=63 Score=24.35 Aligned_cols=70 Identities=9% Similarity=0.166 Sum_probs=36.1
Q ss_pred hcCCCHHHHHHHHH-HHHhCCCCCChh----hHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 121 CRVGRWEEARKKLD-QLSEKGLVPGVV----TYNILINGLCKKGMI-MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 121 ~~~~~~~~a~~~~~-~~~~~g~~~~~~----~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.+...+++.....+ +|.+.++ |+.. .|+.++++---..+- --|.+.+++ ..+|.-|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCC
Confidence 33444555555443 4455444 4544 355555443222111 123333333 356888999999999
Q ss_pred chhHHH
Q 045498 195 ETDRAS 200 (207)
Q Consensus 195 ~~~~a~ 200 (207)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 876544
No 405
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=62.94 E-value=28 Score=20.31 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
+.+.+..+++.+..+|. ..|..+..++-..|
T Consensus 45 r~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGK----QAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcC
Confidence 34444555554444432 24444444444443
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=67 Score=24.53 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhC---CCCccHHHH--HHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVY--SLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVT 147 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 147 (207)
...++...-+.++.++|.+.++++.+. .-.|+...| ..+.+++...|+.+++.+.+++..+ .|++|++.+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344555555666788888888877543 124454444 3445666778888888888887776 566665443
Q ss_pred -HHHHHHHH
Q 045498 148 -YNILINGL 155 (207)
Q Consensus 148 -~~~li~~~ 155 (207)
|+.+-+-|
T Consensus 158 ~fY~lssqY 166 (380)
T KOG2908|consen 158 SFYSLSSQY 166 (380)
T ss_pred hHHHHHHHH
Confidence 44443333
No 407
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.64 E-value=91 Score=25.69 Aligned_cols=179 Identities=11% Similarity=0.023 Sum_probs=103.5
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH---Hc-CCCcc--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--cchhhHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI---KK-GICLD--VFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT--AELVTYNP 80 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~---~~-~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ 80 (207)
.++..+|+..+.--.+.|+.+... .+ .++-. ...|-..+.-....|+.+-|..++..-.+-.++ |....+.+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345567777777777777777766 11 11111 122333333333447777777777666554333 22223333
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccH-HHHHHHHHHHhcCCCHHHHH---HHHHHHHhCCCCCChhhHHHHHHHH-
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNI-EVYSLVIDGLCRVGRWEEAR---KKLDQLSEKGLVPGVVTYNILINGL- 155 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~---~~~~~~~~~g~~~~~~~~~~li~~~- 155 (207)
.+ .-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. +++........ +......+.--+
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFA 447 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHH
Confidence 22 344679999999999888764 443 33334456667788888887 44444443322 222333333222
Q ss_pred ----HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 156 ----CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 156 ----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.-.++.+.|..++.++.+. .+++...|..++.......
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2357888999999988876 5667777777777665544
No 408
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.53 E-value=52 Score=22.90 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=80.1
Q ss_pred cccccchhhhHHHHHhhhh----hhhHHHHH-------HcCCCc----cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 045498 6 QRFKGNFHVYGIRINGMCK----IREIDSAI-------KKGICL----DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG 70 (207)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~----~g~~~~a~-------~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 70 (207)
.|..+|+.-++-++..+.+ .+.++.+. ..++.+ +....-.=+..|-+.|+|.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 5777777777777666653 33444433 333333 33344444556777788877777766554321
Q ss_pred CCcc-hhhHHHHH-hhHhhhc--ChhhHHHHHHHHHhCCCCcc-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 71 ITAE-LVTYNPLI-HDNWEKQ--GRFSAMALLQTLERDKYELN-------IEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 71 ~~~~-~~~~~~ll-~~~~~~~--~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..+. ...+..-+ .++.+.- +..--...|.+-.-.+.+.| ..+--+++-.|-+.-+|.++.++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111111 1111110 11111112222222211111 122234555666777777777777776554
Q ss_pred CC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 140 GL--------------VPGVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 140 g~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
.+ .+.-..-|.....|.+.|.+|.|..+++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 22 2233445666677777777777777766
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=61.04 E-value=66 Score=23.90 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhCCC----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 91 RFSAMALLQTLERDKY----ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
...+.+.|+.....+. ..+...-..++....+.|+.+.-..+++..... .+...-..++.+.+-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567888888776421 445667777888888888877766666666654 467778889999998999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCch--hHHHHHHH
Q 045498 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNET--DRASSFLK 204 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~ 204 (207)
+++.....+..++.. ...++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 999988864223333 34455555534443 66666654
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=60.39 E-value=1.4e+02 Score=27.34 Aligned_cols=155 Identities=16% Similarity=0.043 Sum_probs=96.9
Q ss_pred HHhcCChhHHHH------HHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHH-------HhCCCCccHHHHHHH
Q 045498 50 LCTFNRLKEAVE------LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL-------ERDKYELNIEVYSLV 116 (207)
Q Consensus 50 ~~~~~~~~~a~~------~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~l 116 (207)
....|.+.++.+ ++......-.++....|..|-..+.+.++.++|...-... ......-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566666655 5654333323555677888888888999998877755432 222222244556666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhh
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEK-----G--LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G--CFPDSTS 182 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~~ 182 (207)
.-.....++...|...+.+.... | .+|...+++.+-..+...++++.|.++.+...+. | --.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55556666777777776655433 2 2333444455544455568889999998887653 1 1236677
Q ss_pred HHHHHHHHHhcCchhHHHHHHH
Q 045498 183 FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
+..+.+.+...+++..|.+..+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 8888888888888888776544
No 411
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.14 E-value=45 Score=27.43 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
....+.+..+-.-.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+...+..+...+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44444444433334556667777888888888888888776654422 3345777777778888887777766666543
No 412
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.94 E-value=61 Score=23.18 Aligned_cols=162 Identities=16% Similarity=0.087 Sum_probs=82.6
Q ss_pred cCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-ccHH
Q 045498 34 KGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LNIE 111 (207)
Q Consensus 34 ~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~ 111 (207)
..+.|+ +.+||-+---+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|++..|.+=+-..-+.+.. |-..
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 344554 5667777777788888888888888887765333333333333 233456677666666555444321 2112
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CChhhHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKL-DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF------PDSTSFN 184 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------p~~~~~~ 184 (207)
.|--++ -..-++.+|..-+ ++... .|..-|..-|-.|. .|++. ...+++++....-. .=..||-
T Consensus 171 LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 171 LWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 221111 2233455554433 22222 24444444333332 12221 12233333322110 1125677
Q ss_pred HHHHHHHhcCchhHHHHHHHh
Q 045498 185 TVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~ 205 (207)
-|.+-+...|+.++|..+|+-
T Consensus 242 YL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HHHHHHhccccHHHHHHHHHH
Confidence 778888888888888888764
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.72 E-value=34 Score=20.21 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=34.3
Q ss_pred HhhhcChhhHHHHHHHH----HhCCCCcc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 85 NWEKQGRFSAMALLQTL----ERDKYELN----IEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m----~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..+.+++.+|.+-+.+. ...+.... ....-.+.......|++++|.+.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678888875555444 33333221 122233445567889999999999988775
No 414
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=59.49 E-value=27 Score=19.71 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=24.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ 89 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 89 (207)
..++.+.+.+++++..+.|.+|.......+..+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45777777777777777776666655555665555444
No 415
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=58.91 E-value=45 Score=21.29 Aligned_cols=66 Identities=23% Similarity=0.051 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL----VPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.|-...|..+-..|..-.+.+.+...|......-. .|+....-.-+......|++-+|++..+.+.
T Consensus 49 TP~rrlYf~vQ~m~i~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~ 118 (126)
T PF07378_consen 49 TPLRRLYFAVQLMYIDPEDADEARDLYRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKLI 118 (126)
T ss_pred CHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHhH
Confidence 34445666666666655555555555544433211 2333333334445555666666666655544
No 416
>COG0819 TenA Putative transcription activator [Transcription]
Probab=58.89 E-value=38 Score=23.94 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=59.0
Q ss_pred HHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHH-----------HHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHH
Q 045498 29 DSAIKKGICLDVFVYSSLINGLCTFNRLKEAVEL-----------FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMAL 97 (207)
Q Consensus 29 ~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-----------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 97 (207)
+........|....|+.-|...+..|++.+.... ..++.+....+....|...++.|....-.+.+..+
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Confidence 3444777888888899999888888887765432 22333333323557899999988875544444444
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWE 127 (207)
Q Consensus 98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (207)
.+.+-+..-..+..-...+...+...-+++
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E 207 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTASRFE 207 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 444433333334445555555555544444
No 417
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=57.56 E-value=36 Score=19.73 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 74 (207)
....++..+.+ ++++++...+.++...|++++
T Consensus 7 ~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~ 38 (89)
T PF08542_consen 7 VIEEILESCLN-GDFKEARKKLYELLVEGYSAS 38 (89)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH
Confidence 33444444433 355555555555555554433
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.92 E-value=1.2e+02 Score=25.47 Aligned_cols=152 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC---
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV--- 123 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 123 (207)
...+.-.|+++.|++.+-+ ..+...+.+.+.+.+.-+.-.+-.+....-+-.....+.+| .-+..+|..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------CCC----ChhhHH
Q 045498 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG---------------CFP----DSTSFN 184 (207)
Q Consensus 124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------~~p----~~~~~~ 184 (207)
.+..+|.+.+-.+...+-+.....+...+.-+.-..+ +...++-.+...| +.. -.....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletr--ef~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETR--EFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH----HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccC--CHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Q ss_pred HHHHHHHhcCchhHHHHHHH
Q 045498 185 TVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~ 204 (207)
....-+...|++++|..+|+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~ 438 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYH 438 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
No 419
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.83 E-value=1.2e+02 Score=25.39 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=74.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCcchhhHHHH-HhhHhhhcChhhHHHHHHHHHhCC---CCccHHHHHHH
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQ----GITAELVTYNPL-IHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLV 116 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l 116 (207)
.++..+.+.+... |....++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|...++-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555555544 88888886543 222233344444 333333378888999988875442 34455566666
Q ss_pred HHHHh--cCCCHHHHHHHHHHHHhCC---------CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 045498 117 IDGLC--RVGRWEEARKKLDQLSEKG---------LVPGVVTYNILINGL--CKKGMIMEADKLLVQMK 172 (207)
Q Consensus 117 i~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~ 172 (207)
+.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65553 4555677777776663321 134566777777555 46677777777666554
No 420
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.59 E-value=43 Score=20.39 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCC
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG--RWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~ 142 (207)
..++..|...++.++|..-+.++... .-.......++......+ .-+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 44566777778888888888776433 122334444444444442 234456667777766544
No 421
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.41 E-value=1.2e+02 Score=24.95 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMV 67 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~ 67 (207)
...++.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3456778888888888888887774
No 422
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.71 E-value=19 Score=15.61 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHc
Q 045498 159 GMIMEADKLLVQMKEK 174 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~ 174 (207)
|+++.|..+|+++...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3455666666666544
No 423
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.39 E-value=79 Score=22.47 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 191 (207)
.++.++...|+.+.|..+++...... .+......++.. ..++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 46666666777777777777644321 122223333333 45567777776665544321 1345555665555
No 424
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=53.05 E-value=1.1e+02 Score=27.24 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=40.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGV-VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
....+.+++++|+.|...|+-... ..|......+.+.+.+.+|..+|+.-.++...|-...-..+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~ 155 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQY 155 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 445567777777777777765443 34445556666677777777777776666556655443333
No 425
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.90 E-value=1.4e+02 Score=25.00 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=97.3
Q ss_pred HhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCcch-----hhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CCccH
Q 045498 41 FVYSSLINGLC-TFNRLKEAVELFDKMVAQGITAEL-----VTYNPLIHDNWEKQGRFSAMALLQTLERDK----YELNI 110 (207)
Q Consensus 41 ~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~ 110 (207)
.++--+...+. ...+++.|...+++.....-.++- ..-..++..+.+.+... |...+++..+.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44445555555 578899999999977543222221 12234455555555555 888888765432 22333
Q ss_pred HHHHHH-HHHHhcCCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC--------
Q 045498 111 EVYSLV-IDGLCRVGRWEEARKKLDQLSEKG---LVPGVVTYNILINGLC--KKGMIMEADKLLVQMKEKGC-------- 176 (207)
Q Consensus 111 ~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~-------- 176 (207)
..|.-+ +..+...++...|.+.++.....- ..|....+-.++.+.. +.+..+++.+..+++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 444444 333333479999999998776542 2334444545554443 45667788888877744322
Q ss_pred -CCChhhHHHHHHHH--HhcCchhHHHHHHHhh
Q 045498 177 -FPDSTSFNTVIQGF--LVKNETDRASSFLKKN 206 (207)
Q Consensus 177 -~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~m 206 (207)
.|-..+|..+++.+ ...|+++.+.+.++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556777777755 4577777777776653
No 426
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.73 E-value=1.2e+02 Score=24.35 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
|+.-|...|+..+|.+.++++.---+ ....++-+++.+.-+.|+-...+.+++..-..|. .|-+.+-.+|.+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 44444555555555555444321111 1344566666666666666666666665555533 244555555544
No 427
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=52.55 E-value=77 Score=22.06 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=50.8
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcchhhHHHHHh-hHhhhc--ChhhHHHHHHHHHhCCCCccHH--
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GITAELVTYNPLIH-DNWEKQ--GRFSAMALLQTLERDKYELNIE-- 111 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~-~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-- 111 (207)
...-++...-...+.|++++|.+-++++.+. .++--...|..+.. +++..+ .+-+|..++..+...+. |+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHc
Confidence 3445556666666778888887777766432 11112234555554 344443 34456666665554432 2211
Q ss_pred --HHHHHHHH--------------HhcCCCHHHHHHHHHHHHh
Q 045498 112 --VYSLVIDG--------------LCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 112 --~~~~li~~--------------~~~~~~~~~a~~~~~~~~~ 138 (207)
.+...|.+ ..+.|+++.|.++++-|..
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111111 2356777777777777765
No 428
>PRK12356 glutaminase; Reviewed
Probab=52.36 E-value=1e+02 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=13.0
Q ss_pred HcCCCccHHhHHHHHHHHHhcCC
Q 045498 33 KKGICLDVFVYSSLINGLCTFNR 55 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~ 55 (207)
+-|.+|+-..||+++..-...|.
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g~ 113 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGGK 113 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCCC
Confidence 56666666666666544433343
No 429
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.14 E-value=96 Score=23.02 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=39.7
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCCCChhhHHHHH
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLVPGVVTYNILI 152 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li 152 (207)
-...+..+...|++..|++++.+..+.- . .-.-|+.+=.. ..++++-....+.+.+. -...|+..|..++
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445566667788888887777665431 0 00011111000 01222222222222211 0135777788888
Q ss_pred HHHHhcCCHHHHH
Q 045498 153 NGLCKKGMIMEAD 165 (207)
Q Consensus 153 ~~~~~~~~~~~a~ 165 (207)
.+|.-.|+...+.
T Consensus 205 ~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 205 EAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHhhhHHHH
Confidence 8887777655443
No 430
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=51.32 E-value=43 Score=21.83 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=18.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
+.|-..+...+++++.++|+..+...|+..+.
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34455555566666666666666666665554
No 431
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=50.86 E-value=1.6e+02 Score=25.14 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCCccHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhC----CCCCChh--hH-HHHHHHHHhcCCHHHHHHHHHHH
Q 045498 105 KYELNIEVYSLVIDGLCRVGR----WEEARKKLDQLSEK----GLVPGVV--TY-NILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~----g~~~~~~--~~-~~li~~~~~~~~~~~a~~~~~~m 171 (207)
|++.|...|..|+.++....+ .+++.++++.+++. |+++..+ .| -.+...|+..|+.+........+
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567899999999999877544 46777777766543 7765433 22 34567788888766544444433
No 432
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=50.66 E-value=64 Score=20.59 Aligned_cols=45 Identities=16% Similarity=-0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
..-.+++.+.+.++.-....+..+=..|.+..+..+|..+|+-++
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 344455566666665444444444455556666777777766543
No 433
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.45 E-value=90 Score=22.21 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 43 YSSLINGLCT--FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 43 ~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
|...+.++.. ++++++|...+-.- .+.|+ .-.-++.++...|+.+.|..+++...-... +......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-
Confidence 5556666554 56677777776222 22222 223577888889999999999987553322 22333444444
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 55689999988877666531 2456777777766443
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.16 E-value=1.7e+02 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.|-.+..+|....+.+.+.++++.+.+.
T Consensus 212 Dy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 212 DYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 4556667777777888888888877764
No 435
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.04 E-value=52 Score=19.40 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
++|+-....|+..|...|..++....-.=.++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556666666666666666666665555555555555555554
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.95 E-value=93 Score=22.23 Aligned_cols=97 Identities=20% Similarity=0.174 Sum_probs=48.7
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc---cHHHHH--HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEVYS--LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 146 (207)
.++..-+|.|+--|.-...+.+|...|.. ..|+.| +..+++ .-|......|+.+.|.+....+-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44445555555555555555555555533 333333 333333 34556677777777777776655433333332
Q ss_pred hHHHHH----HHHHhcCCHHHHHHHHHH
Q 045498 147 TYNILI----NGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 147 ~~~~li----~~~~~~~~~~~a~~~~~~ 170 (207)
.+-.|. -=..+.|..++|.++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222221 112455666666666554
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.52 E-value=1.4e+02 Score=24.31 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=46.9
Q ss_pred HhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-------------CccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 67 VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-------------ELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 67 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
.+.|+..+......++... .|+...|..++++....|- .++......++.++.. ++.+.+..++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 4456666666665555443 4777778887776554431 1233344555555444 7788888888
Q ss_pred HHHHhCCCCCC
Q 045498 134 DQLSEKGLVPG 144 (207)
Q Consensus 134 ~~~~~~g~~~~ 144 (207)
+.+...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 88888887654
No 438
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=49.04 E-value=82 Score=22.34 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHhCCCC-------ccHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 045498 91 RFSAMALLQTLERDKYE-------LNIEVYSLVIDGLCRVG---------RWEEARKKLDQLSEKGLVP-GVVTYNILIN 153 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~~~~g~~~-~~~~~~~li~ 153 (207)
.+.|..++..|-...++ -...-|..+..+|++.| +.+.-.++++...+.|++. -++.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45677777777544321 14566788888888876 3455666666666666542 2446667766
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 045498 154 GLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~ 172 (207)
--.-.-++++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556667766666553
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.96 E-value=60 Score=20.68 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 130 RKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 130 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
.++|..|.+.|+--. ..-|......+-..|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555554444322 2223334444444555555555443
No 440
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=48.42 E-value=38 Score=20.39 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=28.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN 109 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 109 (207)
+..++..+..+|..+.+.|. .+...+..+...+..-++.+-- ..+..=++..+.|+
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~ 91 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPD 91 (97)
T ss_pred hccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCc
Confidence 34556666667777666663 3333333455555555555444 44433333344444
No 441
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.26 E-value=1.3e+02 Score=24.13 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------CC---ccHHHHHHHHHHHh----
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YE---LNIEVYSLVIDGLC---- 121 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~---~~~~~~~~li~~~~---- 121 (207)
.+++-+++++.+.+.| .+| ....-|.+|.+.+++++|...+++-.+.| ++ ....+...++...-
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4678888888888876 334 56667899999999999999998876643 22 12345555555542
Q ss_pred -cCCCHHHHHHHHHHHHhCCCC
Q 045498 122 -RVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 122 -~~~~~~~a~~~~~~~~~~g~~ 142 (207)
|.|. ..+..+++.+...|+.
T Consensus 146 vRHGt-pDarlL~e~~~a~G~~ 166 (480)
T TIGR01503 146 IRHGT-PDARLLAEIILAGGFT 166 (480)
T ss_pred ccCCC-CcHHHHHHHHHHcCCC
Confidence 3333 3577788888877764
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.02 E-value=1.9e+02 Score=25.34 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=93.0
Q ss_pred hhhHHHHH-----------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH-----hhHhhh
Q 045498 25 IREIDSAI-----------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEK 88 (207)
Q Consensus 25 ~g~~~~a~-----------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~ 88 (207)
.|+++++. .....+....+..+..+..-.|++++|..+..+..+..-.-+...+.... ..+...
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q 550 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ 550 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh
Confidence 46666665 34445566777788888888999999998877765542222333332222 233445
Q ss_pred cChhh--HHHHHHHHH-----hCC-CCccHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHh
Q 045498 89 QGRFS--AMALLQTLE-----RDK-YELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGVVTYN--ILINGLCK 157 (207)
Q Consensus 89 ~~~~~--a~~~~~~m~-----~~~-~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~ 157 (207)
|+... ....+.... +.. ..+-..+...++.++.+.. ...++..-++.-......|-..... .|+.....
T Consensus 551 Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 551 GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 52222 222222211 111 1123345556666666521 1122222222223332333333333 67788889
Q ss_pred cCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHH--HHhcCchhHHHHHHH
Q 045498 158 KGMIMEADKLLVQMKEKGCFP----DSTSFNTVIQG--FLVKNETDRASSFLK 204 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~~~ 204 (207)
.|++++|...+.++......+ +-.+-...++. ....|+...+.....
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 631 RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 999999999999887654333 22232333332 234566666655543
No 443
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.63 E-value=1.9e+02 Score=25.05 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=67.7
Q ss_pred hhhhhhHHHHH-----HcCCCc---cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498 22 MCKIREIDSAI-----KKGICL---DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 22 ~~~~g~~~~a~-----~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 93 (207)
+.+.+.+++|+ ..|..| ........|..+.-.|++++|-.+.-.|... +..-|...+..+...++...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 34556666666 333344 3455666777777777777777766666543 33344444444444444332
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------------hCCCCCChhhHHHHHHHHH
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS-----------------EKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~g~~~~~~~~~~li~~~~ 156 (207)
...++ .......+..+|..++-.+.. .+...-.+..++.. +..-. +...-..|+..|.
T Consensus 442 Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~LYl 516 (846)
T KOG2066|consen 442 IAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAHLYL 516 (846)
T ss_pred hhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHHHHH
Confidence 22211 111111234455555555554 22222111111100 00001 1122334677777
Q ss_pred hcCCHHHHHHHHHHHH
Q 045498 157 KKGMIMEADKLLVQMK 172 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~ 172 (207)
..+++..|...+-.++
T Consensus 517 ~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQ 532 (846)
T ss_pred HccChHHHHHHHHhcc
Confidence 7777777777776655
No 444
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=47.62 E-value=68 Score=20.01 Aligned_cols=13 Identities=0% Similarity=-0.350 Sum_probs=5.1
Q ss_pred ChhhHHHHHHHHH
Q 045498 144 GVVTYNILINGLC 156 (207)
Q Consensus 144 ~~~~~~~li~~~~ 156 (207)
+...+...+....
T Consensus 81 d~~~l~~~~~~Hl 93 (113)
T PF08870_consen 81 DDEELPKYFKLHL 93 (113)
T ss_pred CHHHHHHHHHHHH
Confidence 3444443333333
No 445
>PRK10304 ferritin; Provisional
Probab=47.27 E-value=85 Score=21.05 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 135 (207)
.+.|.++++.+...|..|...... .-...+.....+++...+.... ....++.++..+.+.+|+.. ..+++.
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~------~p~~~~~s~~e~~~~~l~~E~~-vt~~i~~l~~~A~~~~D~~t-~~fl~~ 122 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVE------SPFAEYSSLDELFQETYKHEQL-ITQKINELAHAAMTNQDYPT-FNFLQW 122 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCC------CCccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHhH-HHHHHH
Confidence 455666666666666555422111 0112333444444444333211 33455666666666655432 223334
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 136 LSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 136 ~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
+.+..+. .......++.-....|+
T Consensus 123 fl~EQve-Ee~~~~~l~~~l~~~~~ 146 (165)
T PRK10304 123 YVSEQHE-EEKLFKSIIDKLSLAGK 146 (165)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhCC
Confidence 3332221 23334444444444443
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.88 E-value=44 Score=25.49 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=67.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH-HHHHHHHHHHhcCCCHHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI-EVYSLVIDGLCRVGRWEEAR 130 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~ 130 (207)
..|.++.|++.|...+..+ ++....|.---+++.+.+++..+++=++...+.+ ||. ..|-.--.+..-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4566777777777776664 4455555556667777777777777666655543 222 22222233444567888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
..++...+.++.+.... .+=...-+.+..++-...+++.+
T Consensus 203 ~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHH
Confidence 88888887766443332 23333444455555444444444
No 447
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=46.60 E-value=71 Score=19.91 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045498 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136 (207)
Q Consensus 57 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 136 (207)
+.+..+++.+.+.|.--|.......+....+.+. .....+-.++.+.|+.++. ....+. .....+.|.++.+.-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi~~~~--i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGIDREI--IEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HHH--HHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCCChHH--HHHHHH---HhhHHHHHHHHHHHH
Confidence 4456677777777766555555555555554222 2345566667777765432 222222 233344455555544
Q ss_pred HhCC-CCCChhhHHHHHHHHHhcC
Q 045498 137 SEKG-LVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 137 ~~~g-~~~~~~~~~~li~~~~~~~ 159 (207)
.... -.++.....-++..+.+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCHHHHHHHHHHHHHCC
Confidence 3332 2345555556666666655
No 448
>PRK10941 hypothetical protein; Provisional
Probab=46.49 E-value=1.2e+02 Score=22.39 Aligned_cols=81 Identities=12% Similarity=-0.107 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQG 189 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~ 189 (207)
...+.+-.+|.+.++++.|.++.+.+...... +..-+.----.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 35667778889999999999999999987533 44445555566889999999999999887662 34555555555555
Q ss_pred HHh
Q 045498 190 FLV 192 (207)
Q Consensus 190 ~~~ 192 (207)
..+
T Consensus 261 l~~ 263 (269)
T PRK10941 261 IEQ 263 (269)
T ss_pred Hhh
Confidence 543
No 449
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=46.24 E-value=1.5e+02 Score=23.63 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=23.4
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+..+.+..+.||...+.-+...|.+.=-++-|-++|+-....
T Consensus 462 ~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rd 503 (586)
T KOG2223|consen 462 FTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRD 503 (586)
T ss_pred HHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeec
Confidence 333445556666666666666666665556555555554443
No 450
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.82 E-value=2.2e+02 Score=25.45 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+.-.+.|.++.+.--.-|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|- .....+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHhh
Confidence 33445555554432233666777777777888999999999988876 4667788888888777777764 454555554
Q ss_pred h
Q 045498 206 N 206 (207)
Q Consensus 206 m 206 (207)
+
T Consensus 1292 ~ 1292 (1304)
T KOG1114|consen 1292 W 1292 (1304)
T ss_pred h
Confidence 4
No 451
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.57 E-value=1.7e+02 Score=24.10 Aligned_cols=117 Identities=13% Similarity=-0.026 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhCCCCcchhhH-HHHHhh-HhhhcChhhHHHHHHHHHh-------CCCCccHHHHHHHHHHHhcCC--
Q 045498 56 LKEAVELFDKMVAQGITAELVTY-NPLIHD-NWEKQGRFSAMALLQTLER-------DKYELNIEVYSLVIDGLCRVG-- 124 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~-- 124 (207)
...+.+.++...+.|..-..... .....+ .....+.+.|...++...+ .+.+ .....+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC
Confidence 46788888888887732221111 122233 5567789999999998876 4422 24555666666532
Q ss_pred ---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC
Q 045498 125 ---RWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 125 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~ 176 (207)
+.+.|..++...-+.|.+ +....-..+.-... ..+...|.++|...-+.|.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 678899999998888743 54443333333332 3467788888888877653
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.99 E-value=1.5e+02 Score=23.18 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=36.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH----hhHh--hhcChhhHHHHHHH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI----HDNW--EKQGRFSAMALLQT 100 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll----~~~~--~~~~~~~a~~~~~~ 100 (207)
...+.+.+++..|.++|+++.....+++...+-..+ .+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 335667899999999999999886665554433333 3332 24466778888875
No 453
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=44.32 E-value=1.4e+02 Score=22.76 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=46.6
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 191 (207)
+.|..+.-...++++.+.+. +......|..+.. .|+.+....+++.+.+.|+.++......|...++
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARR----DPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhcc----ChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 34444455566667766665 3456666666654 5667778888888999999999888888877654
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.15 E-value=50 Score=25.86 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------ChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-------DSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
.+...|++.++-.|++..|.++++.+.-..... ...++..+..+|.-.+++.+|.+.|...+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=43.31 E-value=1.7e+02 Score=23.32 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
.+++-+++++.+.+.| .+| ....-++.|++.++++.|.+.+++-.
T Consensus 26 ~~~e~~~~l~~l~~~g-~~d--vl~ltiDsytr~~~~~~a~~~l~~~~ 70 (428)
T cd00245 26 LLEEHIELLRTLQEEG-AAD--VLPLTIDSYTRVNDYEEAEEGLEESI 70 (428)
T ss_pred CHHHHHHHHHHHHhcC-CCC--eeccccccchhhhhhHHHHHHHHhhh
Confidence 3555666666666655 222 34445666677777777666666653
No 456
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=42.90 E-value=1.3e+02 Score=21.95 Aligned_cols=86 Identities=3% Similarity=-0.064 Sum_probs=48.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHHHHHHHHHHHhcCCC---H
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGR---W 126 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~---~ 126 (207)
-.++++.+++.++.+... ..|...+...+.--++-|+++...-+|.+...... ...+.....+...+...|+ +
T Consensus 22 LNr~Fd~vL~~~R~~p~~--emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip 99 (267)
T PF05476_consen 22 LNREFDDVLAELRQIPVD--EMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIP 99 (267)
T ss_pred hhhhHHHHHHHHHcCcHh--HhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCH
Confidence 467778777777766443 34555566666666677777777777777654431 1222334455555544444 3
Q ss_pred HHHHHHHHHHHhC
Q 045498 127 EEARKKLDQLSEK 139 (207)
Q Consensus 127 ~~a~~~~~~~~~~ 139 (207)
+.....|..+-..
T Consensus 100 ~ql~~hy~~~y~~ 112 (267)
T PF05476_consen 100 SQLYMHYQKFYGK 112 (267)
T ss_pred HHHHHHHHHHhcc
Confidence 4444444444333
No 457
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=42.56 E-value=70 Score=20.91 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=34.2
Q ss_pred CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 69 QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 69 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
.|++.. .|...++ .+.+.|-..++..++++|.+.|+..+...|+.++.-.
T Consensus 105 lgL~V~-GtlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 105 LGLKVT-GTLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred cCCeee-ehhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 354333 4555444 4556677778888888888888888888888776543
No 458
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.52 E-value=1.5e+02 Score=22.42 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 045498 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK---KGMIMEADKLL 168 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~~~~~~a~~~~ 168 (207)
+.-+.++++..+.+ +-+.......+..+.+..+.+...+-|+.+...... +...|...+..... .-.++.+..+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34556666655553 345666666777777777777777777777766332 45556665554433 22455555555
Q ss_pred HHHHHc------CC----CC----Ch---hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 169 VQMKEK------GC----FP----DS---TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 169 ~~m~~~------~~----~p----~~---~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+.... +. .+ .. ..+..+...+.++|..+.|..+++-+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 544321 11 00 11 22333444456778888888777644
No 459
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.49 E-value=83 Score=19.57 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
....++|..+.+.+...+-. ....--+-+..+.+.|++++|.. . -.....||...|.+|- --+.|.-+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALL---L-PQCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHH---H-HTTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHH---h-cccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 34578999999999987542 33333344567789999999921 1 1122467877776654 4577877777776
Q ss_pred HHh
Q 045498 203 LKK 205 (207)
Q Consensus 203 ~~~ 205 (207)
+.+
T Consensus 92 l~r 94 (116)
T PF09477_consen 92 LTR 94 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 460
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.46 E-value=65 Score=26.32 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhhHH---HHHHHHHhcCchhHHHHHH
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-----PDSTSFN---TVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~---~l~~~~~~~~~~~~a~~~~ 203 (207)
+++.+.-.|++|+..||+ ...+++...+...|.+.|-. |....-. .=+..-++.+.+++-+++|
T Consensus 255 IleDl~~LgIkpd~~TyT--------SDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw 326 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYT--------SDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIW 326 (712)
T ss_pred HHHHHHHhCcCcceeeec--------hhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHH
Confidence 456667779999999987 34556666666667666532 2111111 1233456778899999999
Q ss_pred HhhC
Q 045498 204 KKNM 207 (207)
Q Consensus 204 ~~m~ 207 (207)
+||+
T Consensus 327 ~EM~ 330 (712)
T KOG1147|consen 327 EEMK 330 (712)
T ss_pred HHHh
Confidence 9984
No 461
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.13 E-value=2e+02 Score=23.77 Aligned_cols=63 Identities=8% Similarity=-0.022 Sum_probs=32.6
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY 106 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 106 (207)
.+..|..|+..+. .=+.+...++++++.. . + ...+..++++....|....+.-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 4445555555543 3344555555555543 1 1 34556666666666666555555555554443
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.07 E-value=1.7e+02 Score=23.12 Aligned_cols=163 Identities=9% Similarity=-0.032 Sum_probs=86.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC---------CCc
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---------YEL 108 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~ 108 (207)
...+.-+-..|...|+++.|++.|.+.+.-- .+-.+..|-.+|..-.-.++|..+.....+..+.- +++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3557788888999999999999999965431 12233456666777778888888877777766541 222
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG------LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDST 181 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~ 181 (207)
-...+..+..-. .++++.|.+.|-...... +.|...+....+.+.+--++-+.-..+...-.-.. ....+.
T Consensus 230 kl~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 223333333322 235566555443322111 23444444445555554444333323222111000 112344
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 182 SFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
....+...|. +++...+++++++
T Consensus 308 lr~il~~fy~--sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 308 LREILFKFYS--SKYASCLELLREI 330 (466)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHh
Confidence 4444444443 3667777776653
No 463
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.00 E-value=3.7e+02 Score=26.88 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=57.3
Q ss_pred HHhhhhhhhHHHHH--HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHH
Q 045498 19 INGMCKIREIDSAI--KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA 96 (207)
Q Consensus 19 l~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 96 (207)
...|+..+++|... ......+...+. -|......|+|..|...|+++.+.+ ++...+++-+++.....+.++.+..
T Consensus 1427 q~lY~~i~dpDgV~Gv~~~r~a~~sl~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1427 QNLYGSIHDPDGVEGVSARRFADPSLYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHHHHhcCCcchhhhHHHHhhcCccHHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHh
Confidence 33555555555544 111112222222 2333345677777777777776654 3335566666666666666666666
Q ss_pred HHHHHHhCCCCccHHHH-HHHHHHHhcCCCHHHHHHHHH
Q 045498 97 LLQTLERDKYELNIEVY-SLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 97 ~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~ 134 (207)
..+-..... .+....+ +.=+.+--+.++|+.......
T Consensus 1505 ~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1505 HLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 555444432 2222222 233444466666666655544
No 464
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.60 E-value=67 Score=25.64 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+..++-.++++.+.+.| .+| ....-|++|.|.+++++|...+++-.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 34677888888888876 223 4566789999999999999999877663
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.60 E-value=1.7e+02 Score=22.97 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 113 YSLVIDGLCR---VGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 113 ~~~li~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
+..+++++.+ ..+.+.|...+..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444443 367777777777777777665544444444443
No 466
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=41.46 E-value=68 Score=18.24 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=36.4
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGM 160 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~ 160 (207)
..++.|+.+-+..+++ .+...+. -+..+...+..|+. ++++.+.+.|..++.. .++.+.. .+..|+
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 3455556554444443 3333332 22244444556664 3444444555555443 2333333 344555
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 045498 161 IMEADKLLVQMKEKGCFPD 179 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~ 179 (207)
.+ +++.+.+.|..++
T Consensus 72 ~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LE----IVKLLLEHGADVN 86 (89)
T ss_dssp HH----HHHHHHHTTT-TT
T ss_pred HH----HHHHHHHcCCCCC
Confidence 44 4455555555554
No 467
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.35 E-value=1.6e+02 Score=22.64 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=81.2
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh------hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWE------KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (207)
-+++++.++++....+. |.++.....|.++.. .-+|.....+|+-+......|-+ +.|--+ +.++..-.+-
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV-~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVV-TLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeE-eehHHH-HHHHhhhHHh
Confidence 35778888888887774 888888888876643 23677788888888877655433 444333 3344455677
Q ss_pred HHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNIL-INGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
+..+++-+...+---..+.|... ...+.+.|+.++|...|++....--.+
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 77777777765322234444443 466778999999999999988763333
No 468
>COG0819 TenA Putative transcription activator [Transcription]
Probab=41.16 E-value=1.3e+02 Score=21.38 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=56.4
Q ss_pred HHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH-----------HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARK-----------KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 100 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-----------~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
.+.+....|....|...+-..+..|++.+... +...+...+..+....|..-+..|+...-.+.+..+.
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~ 178 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELE 178 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHH
Confidence 34455567788889999988899998766433 3334444443345667888888886543333333333
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCchh
Q 045498 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETD 197 (207)
Q Consensus 169 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 197 (207)
+.+.+..-.-+..-...|.+.+...-+++
T Consensus 179 ~~ld~~~~~~~~~~~~~l~~iF~~ss~~E 207 (218)
T COG0819 179 ALLDSLAENSSEEELEKLKQIFLTASRFE 207 (218)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 33333332334445666666665554443
No 469
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.90 E-value=1.9e+02 Score=23.30 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
-...++.-|.-.|+..+|.++++++---- --....+.+++-+.-+.|+-...+.++++.-+.|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667778888888888888877653221 1256678888888888888777777777766553
No 470
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.80 E-value=1.3e+02 Score=24.23 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhh-HHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCC
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVT-YNPLIHDNWEKQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCRVG 124 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 124 (207)
.+-+.+.+.++.|..++.+..+.. |+... |..--.++.+.+++..|+.=.....+.. |+ ...|.--..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 344556778888888888887763 44433 3333367778888888777776666654 32 223333334555556
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
++.+|...|+..... .|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 667777777766654 677766666555443
No 471
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.70 E-value=1.3e+02 Score=24.20 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=69.2
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHH-HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCC
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYS-LVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGM 160 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~ 160 (207)
+.+...+.++.|..++.+..+. .||...|. .--.++.+.+++..|..=.....+.. |+ ...|-.=..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 4455677888999999888875 56544443 34478899999999887777777653 22 2233333344455566
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
+.+|...|+.... +.|+..-+...+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 6666666666554 578888888888776543
No 472
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.47 E-value=1.2e+02 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
+++|.+.|+..... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444455554444 57777777776665
No 473
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=40.30 E-value=59 Score=22.53 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=48.6
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
.+++.....++.-|.+.|+.+...++.-.+- |+.--.+.+++.|.+.+-++.-.-++.+....-+.|=...+..+
T Consensus 19 ~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD-----~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~~i 93 (196)
T PF12816_consen 19 SLPPEVFKALVEHYASKGRLERLEQLILHLD-----PSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLELI 93 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC-----HHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHHHH
Confidence 4456778888888888888888777776653 33333566777777777777666666555444444444444433
Q ss_pred HH
Q 045498 117 ID 118 (207)
Q Consensus 117 i~ 118 (207)
-.
T Consensus 94 ~~ 95 (196)
T PF12816_consen 94 RS 95 (196)
T ss_pred HH
Confidence 33
No 474
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.95 E-value=1.2e+02 Score=20.82 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 192 (207)
+++|...|+..... .|+..+|..-+....+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 45555666655554 7888888888777643
No 475
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.63 E-value=1.5e+02 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=14.4
Q ss_pred hHHHHHhhHhhhc--ChhhHHHHHHHHHhC
Q 045498 77 TYNPLIHDNWEKQ--GRFSAMALLQTLERD 104 (207)
Q Consensus 77 ~~~~ll~~~~~~~--~~~~a~~~~~~m~~~ 104 (207)
-+..+|.+|.+.+ +.++|+....++++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444555555555 555555555555533
No 476
>COG5210 GTPase-activating protein [General function prediction only]
Probab=39.48 E-value=2.1e+02 Score=23.26 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 142 (207)
.-+++..+.+.|+.+...++..++..+.+.-.++.+.++++.+.-.|..
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH
Confidence 3456666777777777777777777777777777777777777665543
No 477
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=39.29 E-value=1.1e+02 Score=19.82 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 142 (207)
++..++--+...|+++.|.++.+...+.|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 5556666778889999999999988888865
No 478
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.13 E-value=60 Score=16.99 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 045498 152 INGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.-++.+.|++++|.+..+.+.+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 34445555555555555555543
No 479
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.93 E-value=1.2e+02 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChh
Q 045498 159 GMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
...++...++..+.+.+..+|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHH
Confidence 45566666667777666665554
No 480
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=38.87 E-value=1.2e+02 Score=23.23 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC------hhhHHHHHHHHHhCCC
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG------RFSAMALLQTLERDKY 106 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~ 106 (207)
.-.++.+++++-|+.-.+-.+..+||.=-..+..... .-....+-..+...|.
T Consensus 170 ~tleQglDVL~ImrNI~~FVs~Y~YNln~Q~FvEr~S~sK~L~tI~i~hianSIRtHG~ 228 (350)
T PF14744_consen 170 QTLEQGLDVLEIMRNIHVFVSRYNYNLNNQIFVERSSNSKHLNTINIRHIANSIRTHGT 228 (350)
T ss_pred cchhhhhHHHHHHhhhHHHHHhcccccccceEEEecCCCceeeEeeHHHHHHHHHhcCC
Confidence 4567888888888765544455555554444433221 1124555555655553
No 481
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.82 E-value=1.1e+02 Score=20.00 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=31.1
Q ss_pred cchhhHHHHHhhHhhhcCh---hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 73 AELVTYNPLIHDNWEKQGR---FSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
++..+--.+-+++.+..+. .+...+++.+.+...+.. ..-..-+.-++.|.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444444555554433 334555555554221111 112222333555666666666666666554
No 482
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=38.67 E-value=1.3e+02 Score=20.52 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHH-cCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 166 KLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 166 ~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
++++.+.+ .|+.|...++..++..+++.-.++.+.++|+.
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~ 192 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDV 192 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 34445553 55666666666666666665566666666654
No 483
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.29 E-value=1.8e+02 Score=22.31 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHhhHhhhcChh---hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498 80 PLIHDNWEKQGRF---SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141 (207)
Q Consensus 80 ~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 141 (207)
.++..+...++.. +|..+++...... +.+...--.++..|...|-...|.+.|..+.-+.+
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~I 248 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNI 248 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHH
Confidence 3444444444443 4666777666554 33555556678888999999999998887755433
No 484
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.28 E-value=2.2e+02 Score=23.25 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH------------HHHHHHHHhcCC
Q 045498 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV------------YSLVIDGLCRVG 124 (207)
Q Consensus 57 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li~~~~~~~ 124 (207)
+-...+-..+.+.|+..+......++.... |+...+...++.+...+-..+... ...+++++.. +
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~~-~ 255 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALAQ-G 255 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHHc-C
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 045498 125 RWEEARKKLDQLSEKGLVP 143 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~ 143 (207)
+.+.|..+++.+...|..|
T Consensus 256 d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 256 DAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CHHHHHHHHHHHHHcCCCH
No 485
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.10 E-value=1.1e+02 Score=19.47 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 128 EARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
.+.++|..|.++|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777766655332 44455666666667777777776654
No 486
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=37.85 E-value=98 Score=19.05 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=7.6
Q ss_pred CCCCChhhHHHHHHHHH
Q 045498 175 GCFPDSTSFNTVIQGFL 191 (207)
Q Consensus 175 ~~~p~~~~~~~l~~~~~ 191 (207)
+..++...+...+++..
T Consensus 79 ~~~~d~e~l~~~~~lHl 95 (105)
T TIGR03184 79 GPELDDESLAKALNLHV 95 (105)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 34444444444444433
No 487
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.72 E-value=85 Score=18.31 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+..+.++.-.++|+++++.|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344455555666666666666665
No 488
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=37.63 E-value=49 Score=21.01 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=14.5
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEVY 113 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~ 113 (207)
.|+...|.++++.+...|.+|....|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 46666677777777777766654433
No 489
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.38 E-value=51 Score=15.60 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 045498 149 NILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~ 169 (207)
-.+...+-..|++++|..+|+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 344555667777777777744
No 490
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.23 E-value=1.1e+02 Score=19.27 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=14.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
+++.+.++...++|+++++.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555556666666666666655
No 491
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.79 E-value=3.5e+02 Score=25.06 Aligned_cols=122 Identities=20% Similarity=0.068 Sum_probs=74.1
Q ss_pred HhhhcChhhHHH------HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH-------HhCCCCCChhhHHHH
Q 045498 85 NWEKQGRFSAMA------LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL-------SEKGLVPGVVTYNIL 151 (207)
Q Consensus 85 ~~~~~~~~~a~~------~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------~~~g~~~~~~~~~~l 151 (207)
....+.+.++.+ ++...-..-.++....|..+-..+-+.++.++|...=+.. ......-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334455555555 4443222212345566777888888999999888754432 222222245567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 152 INGLCKKGMIMEADKLLVQMKEK-----G--CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...+...++...|...+.+.+.. | .+|...++..+-..+...++++.|.++.+.+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666777888888888877653 2 2334455555555555668888888887754
No 492
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=36.57 E-value=1.2e+02 Score=19.61 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=34.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
.|-...|..+-..|..-.+.+.+...|.+.... =-.|+....-.-+......|++-+|++.++.+..
T Consensus 51 TP~rrlYf~vQ~mli~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~l~~i~~~V~~g~~y~ALk~lR~L~~ 121 (132)
T PRK00794 51 TPLRQLYFIAQLMLIGPAGAEDARAEFARRLEQLLAVFTDPDILAGLKAIDELVEAGRYYEALKALRGLYP 121 (132)
T ss_pred ChHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCcHHHHHHHHHHhhH
Confidence 344556666666666655555555444433221 1123333333344555566666666666665543
No 493
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=36.50 E-value=2.7e+02 Score=23.80 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=46.4
Q ss_pred HcCCCccHHhHHHHHHHHHhcCC----hhHHHHHHHHHHh----CCCCcchh---hHHHHHhhHhhhcChhh---HHHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNR----LKEAVELFDKMVA----QGITAELV---TYNPLIHDNWEKQGRFS---AMALL 98 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~----~~~~~~~~---~~~~ll~~~~~~~~~~~---a~~~~ 98 (207)
..|++.|...|..|+.++....+ .+++.++++-+++ .|+.+..+ .-..+++-|...|+.+. |...+
T Consensus 210 adgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 210 ADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred ccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77899999999999999877443 4677777777764 36654432 12345667777886655 44444
Q ss_pred HHHH
Q 045498 99 QTLE 102 (207)
Q Consensus 99 ~~m~ 102 (207)
.+..
T Consensus 290 ~ev~ 293 (677)
T PF05664_consen 290 QEVA 293 (677)
T ss_pred HHHH
Confidence 4443
No 494
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=36.22 E-value=1.4e+02 Score=20.30 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=55.9
Q ss_pred ChhHHHHHHHHHHhCC----CCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHh-CCCCccHHHHHHHHHHHhcCCCH
Q 045498 55 RLKEAVELFDKMVAQG----ITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLER-DKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
+-+.|..+|..+.+.. ..++. ......+..+.+..+ -+++..+.+ .|+.|....+.-++..+.+.-..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4567888888776532 22332 222233333344333 356666774 78888888889999999988899
Q ss_pred HHHHHHHHHHHhCC
Q 045498 127 EEARKKLDQLSEKG 140 (207)
Q Consensus 127 ~~a~~~~~~~~~~g 140 (207)
+.+.++|+.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998776
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=35.48 E-value=1.8e+02 Score=21.92 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN--ILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..+...+.++.|...++.....-..|-...+. .+.+.|.+.|..+.|..++..+.+.
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556667777777776533222223333333 3346667778888888777777654
No 496
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.30 E-value=63 Score=17.72 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=14.1
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 045498 158 KGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~ 176 (207)
.-+++.|...|.++...|-
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~ 56 (63)
T smart00804 38 NWDYERALKNFTELKSEGS 56 (63)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4578888888888887653
No 497
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.02 E-value=99 Score=18.28 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
+.+.+.++++.+.+.|.. +|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~----AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPR----AFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChh----HHHHHHHHHHh
Confidence 344455555555544322 44444444433
No 498
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.99 E-value=2.1e+02 Score=22.10 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=43.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC-KKGMIMEADKLLVQMKE 173 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~ 173 (207)
.+..+.+.|-+.-|.++-+-+.+....-|+...-..|..|+ +.++++-..++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35667888889999998888888865556666666777664 67788878888777654
No 499
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=34.45 E-value=2.7e+02 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=18.8
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
+...|-.++.-|...++|+.|.++-+...
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~ 600 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ 600 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc
Confidence 44456666667777777777777766443
No 500
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=34.35 E-value=1.1e+02 Score=18.60 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCC
Q 045498 44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDK 105 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~ 105 (207)
..++.-|...+++++|...+.++.... -.......++..+...+ .-+.+..++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345566667778888777777764332 12223334444444332 2233444555555444
Done!