Query 045498
Match_columns 207
No_of_seqs 321 out of 1107
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 04:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.1E-40 2.8E-44 251.6 22.6 192 3-194 16-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 1E-37 3.6E-42 239.9 21.4 174 33-206 18-201 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.6E-24 5.6E-29 173.6 9.8 151 39-194 126-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.7E-24 9.2E-29 172.4 10.3 125 74-198 126-254 (1134)
5 2xpi_A Anaphase-promoting comp 99.9 3.9E-21 1.3E-25 151.1 22.9 194 10-206 371-576 (597)
6 2xpi_A Anaphase-promoting comp 99.9 6.6E-21 2.2E-25 149.8 21.9 195 9-206 302-542 (597)
7 2pl2_A Hypothetical conserved 99.8 3.1E-16 1.1E-20 108.5 21.0 192 9-205 2-210 (217)
8 1w3b_A UDP-N-acetylglucosamine 99.8 3.6E-16 1.2E-20 116.9 22.0 163 40-206 203-365 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.8 1E-15 3.5E-20 114.4 23.4 164 40-207 169-332 (388)
10 2y4t_A DNAJ homolog subfamily 99.7 4.3E-16 1.5E-20 118.4 20.0 193 10-206 24-237 (450)
11 2q7f_A YRRB protein; TPR, prot 99.7 1.4E-15 4.7E-20 106.3 19.4 193 10-206 21-219 (243)
12 2ho1_A Type 4 fimbrial biogene 99.7 4.2E-15 1.4E-19 104.6 21.6 192 12-206 37-235 (252)
13 4eqf_A PEX5-related protein; a 99.7 2.7E-15 9.4E-20 111.2 21.2 192 12-206 65-307 (365)
14 2vq2_A PILW, putative fimbrial 99.7 9.6E-15 3.3E-19 100.7 22.6 195 10-206 6-208 (225)
15 2y4t_A DNAJ homolog subfamily 99.7 2.4E-15 8.2E-20 114.3 20.7 193 10-206 58-283 (450)
16 3mkr_A Coatomer subunit epsilo 99.7 4.2E-15 1.4E-19 107.3 20.7 184 14-206 36-226 (291)
17 1fch_A Peroxisomal targeting s 99.7 3E-14 1E-18 105.4 24.1 192 12-206 64-311 (368)
18 3uq3_A Heat shock protein STI1 99.7 1E-14 3.6E-19 102.5 19.9 191 12-206 5-233 (258)
19 3hym_B Cell division cycle pro 99.7 2.8E-14 9.5E-19 103.9 22.6 192 12-206 90-296 (330)
20 2pl2_A Hypothetical conserved 99.7 7.9E-15 2.7E-19 101.4 18.6 165 37-206 2-177 (217)
21 3vtx_A MAMA; tetratricopeptide 99.7 2.5E-14 8.4E-19 96.1 20.4 164 39-206 4-167 (184)
22 3hym_B Cell division cycle pro 99.7 1.5E-14 5.3E-19 105.2 20.6 196 7-206 17-219 (330)
23 3mkr_A Coatomer subunit epsilo 99.7 2.9E-14 9.9E-19 102.9 21.2 189 8-206 61-261 (291)
24 3cv0_A Peroxisome targeting si 99.7 2.7E-14 9.2E-19 103.8 20.7 190 13-206 56-266 (327)
25 3ieg_A DNAJ homolog subfamily 99.7 7.6E-14 2.6E-18 102.5 21.9 193 11-206 2-214 (359)
26 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.2E-18 94.6 20.6 167 37-206 5-173 (225)
27 3cv0_A Peroxisome targeting si 99.6 2.2E-14 7.6E-19 104.3 16.7 193 11-206 88-312 (327)
28 1fch_A Peroxisomal targeting s 99.6 1.6E-13 5.3E-18 101.6 21.3 193 11-205 97-355 (368)
29 4eqf_A PEX5-related protein; a 99.6 1.2E-13 4E-18 102.4 19.4 193 11-205 98-352 (365)
30 3as5_A MAMA; tetratricopeptide 99.6 1.7E-13 5.7E-18 91.5 17.9 161 41-205 9-169 (186)
31 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-13 9.1E-18 95.3 19.6 164 40-206 37-201 (252)
32 3ieg_A DNAJ homolog subfamily 99.6 7.2E-13 2.5E-17 97.3 22.5 192 11-206 36-260 (359)
33 1b89_A Protein (clathrin heavy 99.6 6.4E-16 2.2E-20 115.6 5.7 166 10-199 30-196 (449)
34 1b89_A Protein (clathrin heavy 99.6 3.2E-15 1.1E-19 111.8 9.3 172 9-207 58-234 (449)
35 3nf1_A KLC 1, kinesin light ch 99.6 1.3E-13 4.3E-18 99.6 17.3 197 10-206 25-304 (311)
36 2gw1_A Mitochondrial precursor 99.6 1.2E-13 4.3E-18 106.3 17.8 191 12-205 270-474 (514)
37 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-12 4.8E-17 87.4 19.1 162 10-174 3-170 (184)
38 2gw1_A Mitochondrial precursor 99.6 3E-13 1E-17 104.2 17.8 193 11-206 236-441 (514)
39 4gyw_A UDP-N-acetylglucosamine 99.6 4.9E-13 1.7E-17 107.2 19.4 164 39-206 8-171 (723)
40 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.1E-18 95.5 15.1 166 37-206 20-185 (243)
41 3uq3_A Heat shock protein STI1 99.6 6E-13 2E-17 93.5 17.5 165 39-206 4-199 (258)
42 3fp2_A TPR repeat-containing p 99.6 1E-12 3.4E-17 101.9 19.4 195 9-206 273-488 (537)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.5E-13 1.2E-17 95.7 14.8 191 11-206 42-241 (275)
44 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.2E-16 87.1 23.4 181 13-205 7-211 (273)
45 3as5_A MAMA; tetratricopeptide 99.5 7.2E-12 2.4E-16 83.4 19.9 160 12-174 8-173 (186)
46 3u4t_A TPR repeat-containing p 99.5 2.3E-12 7.9E-17 91.4 18.2 190 12-206 3-205 (272)
47 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4E-17 100.6 17.5 191 11-205 101-317 (474)
48 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.1E-16 87.9 23.1 192 11-206 49-267 (308)
49 4i17_A Hypothetical protein; T 99.5 6.6E-12 2.3E-16 87.0 19.0 154 39-196 6-169 (228)
50 3fp2_A TPR repeat-containing p 99.5 2.9E-12 1E-16 99.3 18.8 190 14-206 245-454 (537)
51 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 90.5 17.4 192 12-206 37-247 (272)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-12 8.2E-17 91.3 16.2 180 21-206 14-203 (275)
53 4abn_A Tetratricopeptide repea 99.5 5.5E-12 1.9E-16 96.9 18.8 166 37-206 99-284 (474)
54 1ouv_A Conserved hypothetical 99.5 7.7E-11 2.6E-15 83.8 23.6 181 11-206 37-248 (273)
55 3edt_B KLC 2, kinesin light ch 99.5 4.2E-13 1.4E-17 95.4 11.3 170 37-206 40-278 (283)
56 2h6f_A Protein farnesyltransfe 99.5 1.1E-11 3.6E-16 92.7 18.3 189 13-205 98-301 (382)
57 2fo7_A Synthetic consensus TPR 99.4 3.6E-11 1.2E-15 75.7 17.2 130 42-174 3-132 (136)
58 2h6f_A Protein farnesyltransfe 99.4 2.5E-11 8.7E-16 90.6 18.8 190 12-206 131-344 (382)
59 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-11 4E-16 89.2 16.1 170 37-206 24-221 (311)
60 4gyw_A UDP-N-acetylglucosamine 99.4 2E-11 6.9E-16 98.0 17.7 160 11-173 8-173 (723)
61 2fo7_A Synthetic consensus TPR 99.4 4.2E-11 1.5E-15 75.4 15.4 127 77-206 3-129 (136)
62 3qky_A Outer membrane assembly 99.4 1.5E-10 5.1E-15 81.9 18.1 167 38-206 13-221 (261)
63 4i17_A Hypothetical protein; T 99.4 5.2E-10 1.8E-14 77.4 20.4 148 10-161 5-169 (228)
64 2ond_A Cleavage stimulation fa 99.4 3.6E-10 1.2E-14 81.9 19.7 167 37-206 47-229 (308)
65 1qqe_A Vesicular transport pro 99.3 1.7E-10 5.7E-15 83.1 16.9 192 13-206 38-266 (292)
66 2ooe_A Cleavage stimulation fa 99.3 1.3E-09 4.5E-14 84.8 22.4 192 11-206 271-489 (530)
67 3urz_A Uncharacterized protein 99.3 2.1E-10 7E-15 78.6 15.5 130 46-181 60-191 (208)
68 3ulq_A Response regulator aspa 99.3 1.4E-10 4.8E-15 86.5 14.6 192 12-206 143-365 (383)
69 2r5s_A Uncharacterized protein 99.3 7.3E-11 2.5E-15 78.6 11.3 161 42-206 8-170 (176)
70 3qou_A Protein YBBN; thioredox 99.3 3.6E-10 1.2E-14 81.2 15.6 170 33-206 110-281 (287)
71 1qqe_A Vesicular transport pro 99.3 6E-10 2.1E-14 80.2 16.6 165 42-206 39-225 (292)
72 2vsy_A XCC0866; transferase, g 99.3 3.7E-10 1.3E-14 88.6 16.6 134 39-175 22-158 (568)
73 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.6E-09 9E-14 73.9 18.9 165 39-206 3-210 (225)
74 4a1s_A PINS, partner of inscut 99.3 1E-10 3.4E-15 87.8 12.4 194 13-206 87-329 (411)
75 3edt_B KLC 2, kinesin light ch 99.3 2.4E-10 8.3E-15 81.0 13.7 164 11-174 42-281 (283)
76 3q15_A PSP28, response regulat 99.2 6.7E-10 2.3E-14 82.8 15.6 191 12-206 141-362 (378)
77 2ooe_A Cleavage stimulation fa 99.2 2.2E-09 7.4E-14 83.6 19.0 166 38-206 270-451 (530)
78 3sf4_A G-protein-signaling mod 99.2 1.4E-10 4.8E-15 86.6 11.7 195 12-206 87-333 (406)
79 3qky_A Outer membrane assembly 99.2 2.6E-09 8.8E-14 75.5 17.4 185 11-198 14-250 (261)
80 4a1s_A PINS, partner of inscut 99.2 4.2E-10 1.4E-14 84.4 13.7 196 11-206 125-369 (411)
81 3mv2_B Coatomer subunit epsilo 99.2 2.9E-09 9.8E-14 76.6 17.1 164 37-206 97-279 (310)
82 4ga2_A E3 SUMO-protein ligase 99.2 2.2E-10 7.5E-15 74.3 10.4 144 48-195 5-149 (150)
83 3ro2_A PINS homolog, G-protein 99.2 2.1E-10 7.2E-15 83.2 11.5 195 12-206 83-329 (338)
84 3ro2_A PINS homolog, G-protein 99.2 2.8E-10 9.7E-15 82.5 11.9 195 12-206 43-289 (338)
85 3sf4_A G-protein-signaling mod 99.2 4.3E-10 1.5E-14 83.9 13.1 194 13-206 48-293 (406)
86 2pzi_A Probable serine/threoni 99.2 7.3E-10 2.5E-14 88.8 14.1 177 23-205 402-601 (681)
87 2pzi_A Probable serine/threoni 99.2 1E-09 3.4E-14 88.0 14.6 152 51-207 402-561 (681)
88 3u3w_A Transcriptional activat 99.2 5.7E-09 1.9E-13 75.1 17.1 197 8-206 42-263 (293)
89 3ulq_A Response regulator aspa 99.2 5.3E-09 1.8E-13 78.0 17.3 188 18-205 109-331 (383)
90 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.2E-08 4.2E-13 69.5 17.9 88 46-138 12-99 (213)
91 4g1t_A Interferon-induced prot 99.1 1.2E-08 4.2E-13 77.8 19.6 194 10-206 49-273 (472)
92 3rjv_A Putative SEL1 repeat pr 99.1 3.6E-08 1.2E-12 67.5 19.9 160 38-206 16-194 (212)
93 2qfc_A PLCR protein; TPR, HTH, 99.1 1E-08 3.6E-13 73.7 17.4 167 40-206 75-263 (293)
94 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-09 5.2E-14 70.3 11.4 140 18-160 3-149 (150)
95 1xi4_A Clathrin heavy chain; a 99.1 1E-08 3.6E-13 86.2 18.2 177 12-206 1105-1306(1630)
96 2xm6_A Protein corresponding t 99.1 1.2E-07 4.2E-12 73.0 23.2 155 40-206 255-429 (490)
97 2vsy_A XCC0866; transferase, g 99.1 9.6E-09 3.3E-13 80.6 17.3 148 54-205 3-153 (568)
98 2xm6_A Protein corresponding t 99.1 1.2E-07 4.2E-12 73.0 23.2 182 12-205 39-248 (490)
99 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6E-13 72.5 16.6 142 59-205 85-236 (310)
100 3urz_A Uncharacterized protein 99.1 1E-08 3.5E-13 70.1 14.9 162 41-207 5-184 (208)
101 1a17_A Serine/threonine protei 99.1 2E-08 6.8E-13 65.5 15.6 131 40-173 13-145 (166)
102 1hz4_A MALT regulatory protein 99.1 5.2E-08 1.8E-12 72.2 19.7 193 14-206 95-319 (373)
103 1na0_A Designed protein CTPR3; 99.1 1.8E-08 6.2E-13 62.2 14.4 96 41-138 10-105 (125)
104 2r5s_A Uncharacterized protein 99.1 7.3E-09 2.5E-13 68.8 13.2 157 14-173 8-172 (176)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.7E-08 1.6E-12 66.6 17.6 127 14-141 8-152 (213)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 7.1E-09 2.4E-13 75.1 14.0 158 14-172 38-222 (307)
107 3q15_A PSP28, response regulat 99.1 2.1E-08 7E-13 74.7 16.7 185 20-205 109-328 (378)
108 3gw4_A Uncharacterized protein 99.0 5.4E-09 1.8E-13 70.6 12.3 154 52-206 4-173 (203)
109 1a17_A Serine/threonine protei 99.0 3.3E-08 1.1E-12 64.5 15.6 127 76-205 14-142 (166)
110 2e2e_A Formate-dependent nitri 99.0 5.8E-09 2E-13 69.2 12.0 135 51-190 21-158 (177)
111 2yhc_A BAMD, UPF0169 lipoprote 99.0 6.8E-08 2.3E-12 66.7 17.7 163 11-175 3-214 (225)
112 1hz4_A MALT regulatory protein 99.0 4E-08 1.4E-12 72.8 17.6 193 14-206 55-279 (373)
113 2lni_A Stress-induced-phosphop 99.0 2.8E-08 9.5E-13 62.2 14.2 98 39-138 15-112 (133)
114 1na0_A Designed protein CTPR3; 99.0 4.4E-08 1.5E-12 60.5 14.7 116 75-193 9-124 (125)
115 4g1t_A Interferon-induced prot 99.0 2.9E-08 9.8E-13 75.8 16.4 169 37-207 244-457 (472)
116 2vyi_A SGTA protein; chaperone 99.0 2E-08 6.9E-13 62.5 12.8 116 77-195 14-129 (131)
117 2vyi_A SGTA protein; chaperone 99.0 3.6E-08 1.2E-12 61.4 13.6 121 38-161 10-130 (131)
118 2ifu_A Gamma-SNAP; membrane fu 99.0 3.2E-08 1.1E-12 71.7 15.0 174 25-207 29-222 (307)
119 3qou_A Protein YBBN; thioredox 99.0 3.2E-08 1.1E-12 71.1 14.7 161 10-173 115-283 (287)
120 2lni_A Stress-induced-phosphop 99.0 6.2E-08 2.1E-12 60.6 14.4 120 72-194 13-132 (133)
121 4gco_A Protein STI-1; structur 99.0 5.1E-08 1.8E-12 61.1 13.7 95 78-174 16-110 (126)
122 3gyz_A Chaperone protein IPGC; 99.0 3.5E-08 1.2E-12 63.9 13.0 103 75-181 36-138 (151)
123 1xi4_A Clathrin heavy chain; a 99.0 1.5E-07 5.3E-12 79.3 19.3 158 24-206 1088-1247(1630)
124 1p5q_A FKBP52, FK506-binding p 98.9 6.5E-08 2.2E-12 71.1 15.5 129 76-206 148-291 (336)
125 3gyz_A Chaperone protein IPGC; 98.9 5.5E-08 1.9E-12 63.0 13.2 123 14-140 11-134 (151)
126 1p5q_A FKBP52, FK506-binding p 98.9 7E-08 2.4E-12 70.9 15.1 132 39-172 146-292 (336)
127 3u3w_A Transcriptional activat 98.9 1.4E-07 4.9E-12 67.7 16.4 158 16-173 79-265 (293)
128 2vgx_A Chaperone SYCD; alterna 98.9 2.9E-08 1E-12 64.1 10.7 99 74-174 20-118 (148)
129 3gw4_A Uncharacterized protein 98.9 5.2E-08 1.8E-12 65.7 12.5 152 23-174 3-176 (203)
130 4gco_A Protein STI-1; structur 98.9 1.7E-07 5.7E-12 58.8 13.9 113 36-151 8-121 (126)
131 2e2e_A Formate-dependent nitri 98.9 2.5E-08 8.5E-13 66.1 10.5 120 84-206 19-141 (177)
132 2vgx_A Chaperone SYCD; alterna 98.9 2.3E-08 7.8E-13 64.6 9.8 106 98-206 10-115 (148)
133 1elw_A TPR1-domain of HOP; HOP 98.9 4.4E-07 1.5E-11 55.2 14.7 98 40-139 4-101 (118)
134 3rjv_A Putative SEL1 repeat pr 98.8 7.7E-07 2.6E-11 60.9 16.7 161 10-176 16-199 (212)
135 2c2l_A CHIP, carboxy terminus 98.8 1.1E-07 3.9E-12 68.0 12.5 90 13-103 5-100 (281)
136 3upv_A Heat shock protein STI1 98.8 3.2E-07 1.1E-11 57.1 13.1 95 42-138 6-100 (126)
137 2fbn_A 70 kDa peptidylprolyl i 98.8 2.6E-08 9E-13 67.3 8.3 87 111-199 89-175 (198)
138 2kck_A TPR repeat; tetratricop 98.8 2E-07 6.9E-12 56.3 11.6 97 41-139 7-106 (112)
139 3upv_A Heat shock protein STI1 98.8 4.8E-07 1.6E-11 56.3 13.5 98 75-174 4-101 (126)
140 2xcb_A PCRH, regulatory protei 98.8 2.4E-07 8.2E-12 59.1 12.0 99 74-174 17-115 (142)
141 1elw_A TPR1-domain of HOP; HOP 98.8 9.2E-07 3.1E-11 53.8 14.3 110 74-186 3-112 (118)
142 1elr_A TPR2A-domain of HOP; HO 98.8 1.7E-07 5.8E-12 58.3 10.9 97 41-138 5-107 (131)
143 1elr_A TPR2A-domain of HOP; HO 98.8 2.3E-07 8E-12 57.6 11.5 117 75-194 4-126 (131)
144 3q49_B STIP1 homology and U bo 98.8 4E-07 1.4E-11 57.3 12.6 118 72-191 6-127 (137)
145 2xcb_A PCRH, regulatory protei 98.8 3.2E-07 1.1E-11 58.6 12.1 99 39-139 17-115 (142)
146 3e4b_A ALGK; tetratricopeptide 98.8 2E-06 6.7E-11 65.7 18.4 150 42-204 178-346 (452)
147 2qfc_A PLCR protein; TPR, HTH, 98.8 2.8E-07 9.7E-12 66.2 13.1 159 15-173 78-265 (293)
148 3q49_B STIP1 homology and U bo 98.7 1.4E-06 4.8E-11 54.8 14.8 101 37-139 6-106 (137)
149 3sz7_A HSC70 cochaperone (SGT) 98.7 3.4E-07 1.2E-11 59.8 12.0 100 73-174 9-108 (164)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 5.1E-07 1.7E-11 60.9 13.2 133 39-174 37-186 (198)
151 2kck_A TPR repeat; tetratricop 98.7 2E-07 7E-12 56.3 10.2 100 74-174 5-106 (112)
152 4gcn_A Protein STI-1; structur 98.7 8.6E-07 3E-11 55.5 12.7 60 42-102 10-69 (127)
153 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-06 4.7E-11 56.9 14.2 101 38-140 9-109 (164)
154 3dra_A Protein farnesyltransfe 98.7 4E-06 1.4E-10 60.6 17.6 190 14-206 69-284 (306)
155 4gcn_A Protein STI-1; structur 98.7 7.5E-07 2.6E-11 55.8 12.0 108 76-186 9-122 (127)
156 2dba_A Smooth muscle cell asso 98.7 2.2E-06 7.4E-11 54.5 14.1 97 39-138 27-127 (148)
157 3e4b_A ALGK; tetratricopeptide 98.7 2.3E-05 8E-10 59.8 21.9 181 10-205 174-383 (452)
158 1wao_1 Serine/threonine protei 98.7 9.6E-08 3.3E-12 73.5 8.6 121 81-204 12-134 (477)
159 2dba_A Smooth muscle cell asso 98.6 3.2E-06 1.1E-10 53.7 14.4 112 73-189 26-142 (148)
160 1hxi_A PEX5, peroxisome target 98.6 6.9E-07 2.4E-11 55.4 10.7 96 77-174 19-114 (121)
161 3ro3_A PINS homolog, G-protein 98.6 5.4E-07 1.9E-11 58.0 10.7 134 40-173 9-157 (164)
162 4e6h_A MRNA 3'-END-processing 98.6 3.6E-06 1.2E-10 67.3 17.2 168 38-206 376-567 (679)
163 4e6h_A MRNA 3'-END-processing 98.6 2.8E-06 9.6E-11 67.9 16.4 168 38-207 341-531 (679)
164 3ro3_A PINS homolog, G-protein 98.6 3.3E-07 1.1E-11 59.1 8.9 131 76-206 10-155 (164)
165 4f3v_A ESX-1 secretion system 98.6 2.3E-06 7.8E-11 60.9 12.9 139 43-186 105-247 (282)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.7E-06 9.3E-11 65.1 14.4 88 111-200 318-405 (457)
167 1wao_1 Serine/threonine protei 98.6 3.6E-07 1.2E-11 70.3 9.2 121 46-169 12-134 (477)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.8E-06 9.5E-11 65.0 14.0 131 40-172 268-413 (457)
169 1hxi_A PEX5, peroxisome target 98.5 1.8E-06 6.1E-11 53.6 10.7 95 43-139 20-114 (121)
170 4b4t_Q 26S proteasome regulato 98.5 8.3E-06 2.9E-10 61.4 16.2 158 48-205 12-200 (434)
171 1ihg_A Cyclophilin 40; ppiase 98.5 4.7E-06 1.6E-10 62.0 14.1 123 78-202 226-363 (370)
172 3k9i_A BH0479 protein; putativ 98.5 8.9E-07 3.1E-11 54.4 8.7 86 88-174 3-90 (117)
173 2xev_A YBGF; tetratricopeptide 98.5 9.8E-06 3.4E-10 50.2 13.5 90 84-174 11-105 (129)
174 1ihg_A Cyclophilin 40; ppiase 98.5 3.7E-06 1.3E-10 62.6 13.3 124 41-166 224-362 (370)
175 2xev_A YBGF; tetratricopeptide 98.5 1.1E-05 3.8E-10 50.0 13.7 96 43-140 5-106 (129)
176 4b4t_Q 26S proteasome regulato 98.4 2E-05 6.8E-10 59.4 16.2 165 42-206 57-242 (434)
177 3rkv_A Putative peptidylprolyl 98.4 1.1E-05 3.6E-10 52.5 12.6 65 109-174 62-126 (162)
178 3k9i_A BH0479 protein; putativ 98.4 8.8E-07 3E-11 54.5 6.7 88 52-140 2-91 (117)
179 2c2l_A CHIP, carboxy terminus 98.4 1.1E-05 3.9E-10 57.5 13.2 100 38-139 2-101 (281)
180 3rkv_A Putative peptidylprolyl 98.4 1.5E-05 5.1E-10 51.8 12.7 100 40-140 11-127 (162)
181 3n71_A Histone lysine methyltr 98.4 3.2E-06 1.1E-10 65.1 10.7 140 35-174 294-464 (490)
182 2if4_A ATFKBP42; FKBP-like, al 98.4 3.3E-06 1.1E-10 62.0 9.7 144 41-206 180-325 (338)
183 4f3v_A ESX-1 secretion system 98.4 4.1E-06 1.4E-10 59.5 9.8 124 80-206 107-234 (282)
184 3n71_A Histone lysine methyltr 98.4 4.1E-06 1.4E-10 64.5 10.5 123 84-206 318-461 (490)
185 2l6j_A TPR repeat-containing p 98.4 1.4E-06 4.9E-11 52.6 6.5 90 109-201 3-99 (111)
186 2if4_A ATFKBP42; FKBP-like, al 98.3 3.8E-06 1.3E-10 61.7 9.7 143 13-174 180-328 (338)
187 3q7a_A Farnesyltransferase alp 98.3 0.00016 5.6E-09 53.0 17.8 189 15-206 91-328 (349)
188 3dra_A Protein farnesyltransfe 98.3 0.00027 9.3E-09 51.0 18.3 163 39-205 66-246 (306)
189 1klx_A Cysteine rich protein B 98.3 5.7E-05 2E-09 47.8 12.8 113 53-176 8-128 (138)
190 1klx_A Cysteine rich protein B 98.2 0.00019 6.3E-09 45.4 14.1 110 86-206 6-123 (138)
191 1dce_A Protein (RAB geranylger 98.2 0.00029 9.9E-09 55.4 17.8 149 54-206 43-218 (567)
192 3q7a_A Farnesyltransferase alp 98.2 0.0005 1.7E-08 50.5 17.6 154 49-206 63-234 (349)
193 2hr2_A Hypothetical protein; a 98.2 4.2E-05 1.4E-09 49.5 10.6 94 113-206 14-128 (159)
194 2kat_A Uncharacterized protein 98.2 3.5E-05 1.2E-09 46.9 10.0 79 93-173 3-81 (115)
195 2hr2_A Hypothetical protein; a 98.2 7.6E-05 2.6E-09 48.3 11.7 76 111-187 58-149 (159)
196 1na3_A Designed protein CTPR2; 98.1 0.00011 3.9E-09 42.2 10.9 81 110-192 9-89 (91)
197 2kat_A Uncharacterized protein 98.1 7.4E-05 2.5E-09 45.4 9.8 77 128-206 3-79 (115)
198 3dss_A Geranylgeranyl transfer 98.0 0.002 6.7E-08 47.1 18.1 162 41-206 27-219 (331)
199 2l6j_A TPR repeat-containing p 98.0 4.3E-05 1.5E-09 45.8 7.5 65 39-104 3-67 (111)
200 1na3_A Designed protein CTPR2; 98.0 0.00018 6.3E-09 41.3 9.8 61 78-139 12-72 (91)
201 2uy1_A Cleavage stimulation fa 98.0 0.0018 6.1E-08 50.1 17.8 156 38-205 211-379 (493)
202 3ma5_A Tetratricopeptide repea 97.9 0.00011 3.6E-09 43.7 8.5 84 109-193 6-90 (100)
203 3dss_A Geranylgeranyl transfer 97.9 0.0023 7.8E-08 46.7 16.7 147 56-206 90-264 (331)
204 1zu2_A Mitochondrial import re 97.9 0.00014 4.8E-09 47.0 8.6 70 52-123 14-93 (158)
205 1zu2_A Mitochondrial import re 97.8 0.00014 4.8E-09 47.0 8.1 104 85-192 12-136 (158)
206 3ma5_A Tetratricopeptide repea 97.8 0.00017 6E-09 42.7 7.7 62 144-206 6-67 (100)
207 1dce_A Protein (RAB geranylger 97.8 0.0015 5.3E-08 51.3 14.8 153 39-195 62-241 (567)
208 3qww_A SET and MYND domain-con 97.7 7.5E-05 2.6E-09 56.6 6.9 85 122-206 310-408 (433)
209 3qwp_A SET and MYND domain-con 97.7 0.00015 5.1E-09 55.0 8.5 92 115-206 292-397 (429)
210 3ly7_A Transcriptional activat 97.7 0.0038 1.3E-07 46.1 14.5 147 33-185 187-348 (372)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00068 2.3E-08 39.7 8.7 54 120-174 10-64 (99)
212 3qww_A SET and MYND domain-con 97.6 0.00034 1.2E-08 53.1 8.6 87 87-173 310-410 (433)
213 3mkq_A Coatomer beta'-subunit; 97.6 0.0029 9.9E-08 51.5 14.5 97 23-138 610-709 (814)
214 3qwp_A SET and MYND domain-con 97.6 0.00048 1.7E-08 52.2 9.2 92 82-173 294-399 (429)
215 2uy1_A Cleavage stimulation fa 97.5 0.011 3.7E-07 45.8 15.5 138 57-206 196-346 (493)
216 3ly7_A Transcriptional activat 97.4 0.0084 2.9E-07 44.3 13.1 133 71-206 190-336 (372)
217 3mkq_A Coatomer beta'-subunit; 97.3 0.016 5.6E-07 47.2 15.4 131 15-171 632-762 (814)
218 2kc7_A BFR218_protein; tetratr 97.3 0.0013 4.6E-08 38.3 6.9 55 49-104 9-64 (99)
219 3bee_A Putative YFRE protein; 97.0 0.016 5.5E-07 33.7 10.2 65 109-174 5-72 (93)
220 1pc2_A Mitochondria fission pr 97.0 0.005 1.7E-07 39.4 7.7 64 109-173 31-99 (152)
221 1pc2_A Mitochondria fission pr 96.9 0.01 3.5E-07 38.0 8.8 83 56-140 14-101 (152)
222 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0077 2.6E-07 35.8 7.7 72 108-181 3-80 (104)
223 3bee_A Putative YFRE protein; 96.8 0.03 1E-06 32.6 9.7 66 73-139 4-72 (93)
224 2v5f_A Prolyl 4-hydroxylase su 96.5 0.051 1.7E-06 32.1 10.5 68 73-140 3-76 (104)
225 4h7y_A Dual specificity protei 96.5 0.073 2.5E-06 33.9 12.0 104 37-142 10-126 (161)
226 3mkq_B Coatomer subunit alpha; 96.4 0.098 3.3E-06 34.3 13.4 129 47-205 12-140 (177)
227 3mkq_B Coatomer subunit alpha; 96.4 0.098 3.4E-06 34.3 12.1 129 20-172 13-142 (177)
228 4gns_B Protein CSD3, chitin bi 96.4 0.077 2.6E-06 43.1 12.3 128 43-171 251-397 (754)
229 1nzn_A CGI-135 protein, fissio 96.4 0.076 2.6E-06 32.7 9.5 66 108-174 33-103 (126)
230 4h7y_A Dual specificity protei 96.3 0.1 3.4E-06 33.3 10.2 111 74-190 12-138 (161)
231 3u64_A Protein TP_0956; tetrat 96.2 0.082 2.8E-06 37.7 10.3 94 92-185 180-282 (301)
232 1nzn_A CGI-135 protein, fissio 96.2 0.088 3E-06 32.5 9.0 93 47-140 8-104 (126)
233 4gns_B Protein CSD3, chitin bi 96.1 0.14 4.7E-06 41.7 12.2 125 79-205 252-396 (754)
234 2ff4_A Probable regulatory pro 95.8 0.096 3.3E-06 39.1 9.6 72 113-185 174-250 (388)
235 3u64_A Protein TP_0956; tetrat 95.6 0.34 1.1E-05 34.6 11.0 96 56-151 179-283 (301)
236 1v54_E Cytochrome C oxidase po 95.5 0.17 5.9E-06 29.7 7.8 50 90-139 25-74 (109)
237 2ff4_A Probable regulatory pro 95.5 0.1 3.5E-06 39.0 8.8 74 77-151 173-251 (388)
238 1wy6_A Hypothetical protein ST 95.2 0.3 1E-05 30.6 13.0 141 43-205 8-150 (172)
239 4fhn_B Nucleoporin NUP120; pro 94.5 1.6 5.5E-05 37.5 14.3 183 18-203 818-1043(1139)
240 2y69_E Cytochrome C oxidase su 94.5 0.41 1.4E-05 29.8 7.8 61 91-152 69-129 (152)
241 3lvg_A Clathrin heavy chain 1; 93.8 9E-06 3.1E-10 61.6 -16.2 78 14-93 56-134 (624)
242 1v54_E Cytochrome C oxidase po 93.5 0.64 2.2E-05 27.4 10.4 78 112-190 10-89 (109)
243 2y69_E Cytochrome C oxidase su 92.2 1.3 4.5E-05 27.6 10.4 70 120-190 62-132 (152)
244 3o48_A Mitochondria fission 1 91.8 1.4 4.9E-05 27.3 10.0 68 107-174 37-107 (134)
245 3ffl_A Anaphase-promoting comp 91.8 1.3 4.5E-05 28.7 7.5 115 78-205 23-147 (167)
246 3o48_A Mitochondria fission 1 91.7 1.5 5.1E-05 27.2 9.5 70 71-140 36-108 (134)
247 1wy6_A Hypothetical protein ST 91.1 1.9 6.4E-05 27.2 14.0 120 39-177 38-157 (172)
248 4fhn_B Nucleoporin NUP120; pro 91.0 7.1 0.00024 33.7 15.0 147 46-200 818-991 (1139)
249 4b4t_R RPN7, 26S proteasome re 89.9 5.1 0.00018 30.3 12.2 97 76-174 132-237 (429)
250 2uwj_G Type III export protein 89.8 1.9 6.6E-05 25.3 7.7 89 87-184 18-106 (115)
251 4b4t_R RPN7, 26S proteasome re 89.8 5.3 0.00018 30.2 10.7 99 41-139 132-237 (429)
252 3ffl_A Anaphase-promoting comp 89.5 2.1 7.2E-05 27.7 6.9 60 42-101 22-89 (167)
253 2p58_C Putative type III secre 89.4 2.1 7.2E-05 25.2 8.3 89 87-184 19-107 (116)
254 1y8m_A FIS1; mitochondria, unk 89.3 2.8 9.4E-05 26.4 11.7 67 108-174 37-106 (144)
255 1zbp_A Hypothetical protein VP 88.6 3.4 0.00012 29.1 8.0 116 48-174 5-129 (273)
256 1zbp_A Hypothetical protein VP 88.0 5.4 0.00019 28.1 9.5 110 83-205 5-125 (273)
257 1y8m_A FIS1; mitochondria, unk 87.1 4 0.00014 25.7 11.3 69 72-140 36-107 (144)
258 4b4t_P 26S proteasome regulato 86.0 9.7 0.00033 29.0 19.0 180 26-206 30-244 (445)
259 3txn_A 26S proteasome regulato 84.4 11 0.00038 28.2 14.5 132 42-173 21-167 (394)
260 3kea_A K1L; tropism, ANK repea 82.8 5.6 0.00019 27.9 7.1 36 22-57 38-76 (285)
261 3lpz_A GET4 (YOR164C homolog); 82.8 12 0.0004 27.4 16.2 22 146-167 137-158 (336)
262 3txn_A 26S proteasome regulato 82.8 13 0.00044 27.8 14.1 160 13-172 20-208 (394)
263 2xig_A Ferric uptake regulatio 81.0 8.2 0.00028 24.3 7.2 60 65-125 17-76 (150)
264 4b4t_P 26S proteasome regulato 81.0 16 0.00056 27.7 16.6 163 8-172 52-245 (445)
265 1mzb_A Ferric uptake regulatio 80.7 7.8 0.00027 23.9 6.4 59 66-125 9-68 (136)
266 2d2s_A Exocyst complex compone 80.6 12 0.00039 25.8 9.7 90 45-137 23-118 (235)
267 2fe3_A Peroxide operon regulat 80.6 8.3 0.00028 24.1 7.5 60 65-125 12-71 (145)
268 2ion_A PDCD4, programmed cell 80.5 6.8 0.00023 24.9 6.1 65 77-142 11-77 (152)
269 2xig_A Ferric uptake regulatio 80.4 8.6 0.0003 24.2 7.2 60 135-195 17-76 (150)
270 2nsz_A Programmed cell death p 80.4 7.9 0.00027 23.8 7.3 65 77-142 9-75 (129)
271 2b7e_A PRE-mRNA processing pro 80.1 1.9 6.4E-05 22.5 2.8 35 56-90 2-37 (59)
272 3eyy_A Putative iron uptake re 79.3 8.2 0.00028 24.2 6.2 59 65-125 9-67 (145)
273 2d2s_A Exocyst complex compone 79.3 13 0.00044 25.6 8.6 91 81-174 24-120 (235)
274 2w57_A Ferric uptake regulatio 79.2 9.5 0.00033 24.0 7.2 62 64-126 6-68 (150)
275 2wpv_A GET4, UPF0363 protein Y 78.3 17 0.00057 26.3 15.3 72 97-168 79-157 (312)
276 2fe3_A Peroxide operon regulat 77.3 11 0.00037 23.6 6.9 59 136-195 13-71 (145)
277 2fu4_A Ferric uptake regulatio 76.5 7.5 0.00026 21.4 5.8 59 136-195 8-67 (83)
278 1mzb_A Ferric uptake regulatio 76.2 9.9 0.00034 23.4 5.9 34 161-194 34-67 (136)
279 4a1g_A Mitotic checkpoint seri 76.0 13 0.00043 23.7 7.0 53 128-180 83-136 (152)
280 3lpz_A GET4 (YOR164C homolog); 75.7 21 0.00071 26.1 15.7 23 77-99 37-59 (336)
281 1k1a_A B-cell lymphoma 3-encod 75.6 15 0.00052 24.5 8.2 144 47-203 50-203 (241)
282 3eyy_A Putative iron uptake re 74.9 8.7 0.0003 24.1 5.4 58 135-194 9-66 (145)
283 3kea_A K1L; tropism, ANK repea 74.7 17 0.00058 25.4 7.5 14 121-134 169-182 (285)
284 4ets_A Ferric uptake regulatio 74.0 15 0.0005 23.6 6.9 69 57-126 14-85 (162)
285 3esl_A Checkpoint serine/threo 73.9 17 0.00059 24.3 9.5 53 126-178 95-148 (202)
286 2wpv_A GET4, UPF0363 protein Y 73.8 23 0.00077 25.6 12.9 113 76-203 34-157 (312)
287 2wvi_A Mitotic checkpoint seri 72.4 17 0.00057 23.5 7.1 52 129-180 79-131 (164)
288 2w57_A Ferric uptake regulatio 72.1 12 0.0004 23.6 5.5 34 161-194 33-66 (150)
289 2fu4_A Ferric uptake regulatio 72.1 10 0.00035 20.8 6.8 58 66-124 8-66 (83)
290 4ets_A Ferric uptake regulatio 72.1 15 0.00051 23.5 6.1 43 117-159 39-83 (162)
291 3t8k_A Uncharacterized protein 70.8 19 0.00064 23.4 8.8 29 46-74 41-69 (186)
292 1bd8_A P19INK4D CDK4/6 inhibit 69.9 10 0.00036 23.3 5.1 144 46-205 5-155 (156)
293 2p58_C Putative type III secre 69.0 15 0.00052 21.6 7.4 72 124-203 21-92 (116)
294 3eu9_A Huntingtin-interacting 69.0 7.2 0.00024 26.0 4.4 11 47-57 46-56 (240)
295 2o03_A Probable zinc uptake re 68.7 13 0.00043 22.8 5.0 41 84-124 19-59 (131)
296 4aez_C MAD3, mitotic spindle c 68.7 25 0.00085 24.0 6.9 54 127-180 131-185 (223)
297 3esl_A Checkpoint serine/threo 68.0 24 0.00083 23.6 9.0 73 72-144 74-149 (202)
298 3mwm_A ZUR, putative metal upt 67.7 11 0.00039 23.3 4.7 45 81-125 19-63 (139)
299 2etb_A Transient receptor pote 67.2 18 0.00061 24.5 6.2 57 46-103 5-71 (256)
300 1wdy_A 2-5A-dependent ribonucl 66.8 7.4 0.00025 26.7 4.2 21 158-178 192-212 (285)
301 3jxi_A Vanilloid receptor-rela 66.6 27 0.00093 23.7 7.8 56 47-102 9-73 (260)
302 1wdy_A 2-5A-dependent ribonucl 66.0 17 0.00059 24.8 6.0 13 47-59 9-21 (285)
303 3f3f_C Nucleoporin NUP85; stru 65.6 46 0.0016 26.3 8.4 72 127-200 498-569 (570)
304 3hra_A Ankyrin repeat family p 65.1 22 0.00076 22.8 6.1 147 47-202 43-197 (201)
305 3lxu_X Tripeptidyl-peptidase 2 64.7 70 0.0024 28.4 10.0 92 112-206 1236-1342(1354)
306 2keb_A DNA polymerase subunit 62.7 20 0.00069 20.8 5.9 31 129-159 28-58 (101)
307 3twr_A Tankyrase-2; ankyrin re 62.5 15 0.00053 22.8 4.8 119 46-180 11-136 (165)
308 2o03_A Probable zinc uptake re 62.5 17 0.00058 22.2 4.7 47 45-91 15-61 (131)
309 3eiq_C Programmed cell death p 62.4 38 0.0013 25.0 7.2 78 111-189 218-297 (358)
310 1k1a_A B-cell lymphoma 3-encod 62.2 16 0.00055 24.3 5.1 150 46-204 12-171 (241)
311 3jxi_A Vanilloid receptor-rela 61.5 12 0.0004 25.5 4.4 119 81-204 8-161 (260)
312 3lvg_A Clathrin heavy chain 1; 61.1 3.6 0.00012 32.1 1.6 145 15-166 173-325 (624)
313 3mwm_A ZUR, putative metal upt 60.9 15 0.00053 22.7 4.4 49 44-92 17-65 (139)
314 3twr_A Tankyrase-2; ankyrin re 60.6 17 0.00058 22.6 4.8 114 19-144 12-135 (165)
315 2ijq_A Hypothetical protein; s 60.6 31 0.001 22.2 7.6 50 89-138 46-103 (161)
316 2wvi_A Mitotic checkpoint seri 60.5 31 0.0011 22.2 6.7 54 92-145 77-131 (164)
317 3eu9_A Huntingtin-interacting 60.2 27 0.00092 23.1 6.0 14 81-94 45-58 (240)
318 3aji_A 26S proteasome non-ATPa 58.5 22 0.00075 23.5 5.2 168 18-204 9-193 (231)
319 2ijq_A Hypothetical protein; s 58.5 34 0.0011 22.0 8.5 61 112-173 35-103 (161)
320 1ug3_A EIF4GI, eukaryotic prot 58.3 51 0.0017 24.0 10.4 25 43-67 14-38 (339)
321 2ion_A PDCD4, programmed cell 58.0 33 0.0011 21.7 9.4 67 42-109 11-79 (152)
322 2uwj_G Type III export protein 57.6 27 0.00092 20.6 6.8 62 47-115 46-107 (115)
323 4aez_C MAD3, mitotic spindle c 56.8 44 0.0015 22.8 6.2 52 92-143 131-183 (223)
324 2yru_A Steroid receptor RNA ac 56.4 23 0.0008 21.4 4.4 43 132-174 48-90 (118)
325 3hra_A Ankyrin repeat family p 55.1 23 0.00079 22.8 4.8 142 19-166 43-196 (201)
326 3qil_A Clathrin heavy chain 1; 55.1 17 0.00058 22.1 3.6 53 77-132 34-86 (125)
327 2etb_A Transient receptor pote 55.0 22 0.00075 24.1 4.8 118 81-204 5-157 (256)
328 3l6a_A Eukaryotic translation 54.7 62 0.0021 23.9 8.9 23 44-66 16-38 (364)
329 3f3f_C Nucleoporin NUP85; stru 54.2 71 0.0024 25.3 7.7 69 94-164 500-568 (570)
330 2keb_A DNA polymerase subunit 54.0 30 0.001 20.1 5.6 32 93-124 27-58 (101)
331 3ljn_A Hypothetical protein; a 53.9 45 0.0015 24.0 6.6 87 19-109 24-115 (364)
332 2zu6_B Programmed cell death p 53.6 45 0.0016 24.0 6.3 70 112-182 168-239 (307)
333 2rg8_A Programmed cell death p 53.2 40 0.0014 21.7 5.4 59 43-103 13-73 (165)
334 3qye_A TBC1 domain family memb 53.1 37 0.0013 24.5 5.9 45 132-176 210-254 (331)
335 3eiq_C Programmed cell death p 52.9 67 0.0023 23.7 8.9 79 77-156 219-299 (358)
336 3ygs_P Procaspase 9; apoptosis 52.6 31 0.0011 19.8 7.3 36 125-164 52-87 (97)
337 3rjo_A Endoplasmic reticulum a 52.3 72 0.0024 23.9 17.7 154 42-204 199-368 (419)
338 2rg8_A Programmed cell death p 51.8 43 0.0015 21.5 5.4 68 78-147 13-81 (165)
339 4g8k_A 2-5A-dependent ribonucl 51.7 61 0.0021 23.0 7.6 141 47-202 172-320 (337)
340 2nsz_A Programmed cell death p 51.5 39 0.0013 20.6 10.5 67 42-109 9-77 (129)
341 4fke_A Aminopeptidase N; zinc 51.4 1.1E+02 0.0038 25.8 18.1 143 44-192 690-843 (909)
342 3aji_A 26S proteasome non-ATPa 51.1 31 0.0011 22.7 5.0 144 46-204 9-160 (231)
343 2ko4_A Mediator of RNA polymer 51.0 21 0.00073 19.7 3.2 30 175-204 31-60 (81)
344 3l6a_A Eukaryotic translation 50.8 73 0.0025 23.5 9.3 72 77-148 14-86 (364)
345 1ug3_A EIF4GI, eukaryotic prot 48.9 58 0.002 23.7 6.4 95 78-173 14-113 (339)
346 2rfa_A Transient receptor pote 48.6 40 0.0014 22.2 5.3 86 81-171 124-220 (232)
347 3qil_A Clathrin heavy chain 1; 48.1 19 0.00064 21.9 3.0 53 112-167 34-86 (125)
348 4gq2_M Nucleoporin NUP120; bet 47.7 1.3E+02 0.0044 25.6 11.3 108 81-194 816-950 (950)
349 1s6c_A KV4 potassium channel-i 47.6 50 0.0017 20.8 12.0 133 73-207 36-183 (183)
350 1qsa_A Protein (soluble lytic 47.3 1.1E+02 0.0037 24.6 13.1 129 39-171 214-345 (618)
351 2dzn_A Probable 26S proteasome 47.0 17 0.00059 23.9 3.2 165 19-203 6-194 (228)
352 2zu6_B Programmed cell death p 46.7 78 0.0027 22.7 8.4 77 78-155 169-247 (307)
353 3b7b_A Euchromatic histone-lys 46.2 54 0.0018 21.7 5.6 14 19-32 15-28 (237)
354 2pnn_A Transient receptor pote 46.2 49 0.0017 22.6 5.5 55 47-101 17-80 (273)
355 2qfz_A TBC1 domain family memb 46.1 52 0.0018 23.9 5.8 112 57-172 189-313 (345)
356 4ady_A RPN2, 26S proteasome re 45.9 1.4E+02 0.0048 25.5 12.1 51 87-138 536-588 (963)
357 3e3v_A Regulatory protein RECX 45.5 60 0.0021 21.1 11.0 114 56-172 49-164 (177)
358 4a1g_A Mitotic checkpoint seri 45.3 57 0.0019 20.7 8.8 53 92-144 82-135 (152)
359 3d5l_A Regulatory protein RECX 45.3 69 0.0023 21.7 12.9 51 56-107 92-142 (221)
360 1bpo_A Protein (clathrin); cla 44.1 1.1E+02 0.0038 23.7 9.3 139 54-205 343-481 (494)
361 3t5v_B Nuclear mRNA export pro 43.6 66 0.0023 24.6 6.1 61 111-171 177-246 (455)
362 2p22_A Suppressor protein STP2 43.1 63 0.0022 21.1 5.1 56 143-199 109-164 (174)
363 2f6m_A Suppressor protein STP2 42.6 38 0.0013 18.0 5.0 46 148-194 5-50 (65)
364 4fke_A Aminopeptidase N; zinc 42.5 1.6E+02 0.0053 25.0 12.8 91 79-174 690-787 (909)
365 3qye_A TBC1 domain family memb 42.2 93 0.0032 22.4 11.9 128 55-189 164-303 (331)
366 3pvs_A Replication-associated 41.8 1.1E+02 0.0039 23.2 10.3 102 92-195 168-305 (447)
367 1uzc_A Hypothetical protein FL 41.5 40 0.0014 18.2 3.4 36 55-91 13-49 (71)
368 2qq8_A TBC1 domain family memb 41.1 42 0.0014 24.3 4.6 44 132-175 215-258 (334)
369 1s3q_A Ferritin; ferroxidase, 41.0 69 0.0024 20.6 5.2 111 55-174 52-162 (173)
370 3ltm_A Alpha-REP4; protein eng 40.7 73 0.0025 20.7 13.6 48 109-160 125-172 (211)
371 3ljn_A Hypothetical protein; a 39.4 1E+02 0.0035 22.1 8.4 57 19-75 57-116 (364)
372 1n11_A Ankyrin; clathrin, BAND 39.3 76 0.0026 23.5 6.0 45 19-63 18-67 (437)
373 3bqo_A Telomeric repeat-bindin 39.3 46 0.0016 22.3 4.0 24 81-104 123-146 (211)
374 4b4t_S RPN3, 26S proteasome re 38.8 1.4E+02 0.0048 23.4 10.2 62 40-104 231-299 (523)
375 1oai_A Nuclear RNA export fact 38.7 42 0.0014 17.3 3.1 22 53-74 33-55 (59)
376 2rfa_A Transient receptor pote 38.5 83 0.0028 20.6 7.2 175 19-204 7-218 (232)
377 2pnn_A Transient receptor pote 38.4 72 0.0025 21.7 5.4 119 81-204 16-169 (273)
378 3t8k_A Uncharacterized protein 38.4 78 0.0027 20.4 8.8 129 50-182 13-151 (186)
379 2f8y_A Notch homolog 1, transl 38.1 79 0.0027 20.5 5.4 168 17-202 27-210 (223)
380 1wty_A Hypothetical protein TT 38.0 64 0.0022 19.2 6.8 76 90-172 3-79 (119)
381 3t5v_B Nuclear mRNA export pro 37.9 1.2E+02 0.0039 23.4 6.6 60 147-206 178-246 (455)
382 3f6q_A Integrin-linked protein 37.9 74 0.0025 19.9 5.6 119 49-180 11-133 (179)
383 2cos_A Serine/threonine protei 37.8 42 0.0014 17.0 2.9 11 196-206 38-48 (54)
384 2qq8_A TBC1 domain family memb 37.1 67 0.0023 23.2 5.2 83 55-141 169-259 (334)
385 4g8k_A 2-5A-dependent ribonucl 37.1 1.1E+02 0.0037 21.6 7.8 105 61-180 220-329 (337)
386 2dod_A Transcription elongatio 36.8 48 0.0016 18.5 3.4 36 55-91 15-51 (82)
387 2r9g_A AAA ATPase, central reg 36.5 95 0.0033 20.8 9.3 64 43-107 14-85 (204)
388 2xai_A ASB-9, ankyrin repeat a 35.2 1E+02 0.0035 20.8 6.0 169 19-204 7-187 (261)
389 2crb_A Nuclear receptor bindin 34.5 65 0.0022 18.5 3.6 20 148-167 18-37 (97)
390 1y1x_A Leishmania major homolo 34.1 92 0.0032 19.9 5.6 10 127-136 129-138 (191)
391 3ibx_A TENA, HP1287, putative 34.0 1.1E+02 0.0036 20.6 7.9 93 104-197 107-211 (221)
392 2p22_A Suppressor protein STP2 33.2 88 0.003 20.4 4.6 44 78-122 114-157 (174)
393 3bge_A Predicted ATPase; struc 33.0 1.1E+02 0.0038 20.5 9.4 65 43-107 7-79 (201)
394 3bvf_A Ferritin; iron storage, 32.2 46 0.0016 21.6 3.3 19 56-74 65-83 (181)
395 3c1d_A Protein ORAA, regulator 31.8 99 0.0034 19.5 12.2 51 56-108 46-96 (159)
396 3lxu_X Tripeptidyl-peptidase 2 31.7 2.8E+02 0.0097 24.8 9.7 48 122-172 1296-1343(1354)
397 3e3v_A Regulatory protein RECX 31.2 1.1E+02 0.0037 19.8 9.6 52 91-143 49-100 (177)
398 4hbd_A KN motif and ankyrin re 30.8 1.3E+02 0.0043 20.7 5.6 141 50-205 118-272 (276)
399 1zl8_A LIN-7; heterodimer, alp 30.6 30 0.001 17.2 1.6 21 54-74 7-27 (53)
400 1dp3_A TRAM protein; helix-loo 30.5 58 0.002 16.5 2.9 33 126-158 12-44 (55)
401 1ixm_A SPO0B, protein (sporula 30.5 1.2E+02 0.004 20.0 5.1 70 92-172 16-85 (192)
402 2p1h_A APAF-1, apoptotic prote 30.4 76 0.0026 17.8 7.6 34 123-160 49-82 (94)
403 3ph0_C ASCG; type III secretio 30.3 61 0.0021 16.7 4.3 15 90-104 21-35 (61)
404 2fv2_A RCD1 required for cell 30.0 1.1E+02 0.0036 21.6 4.8 52 154-205 182-234 (268)
405 3d5l_A Regulatory protein RECX 29.4 1.3E+02 0.0045 20.3 11.9 53 90-143 91-143 (221)
406 3k1s_A PTS system, cellobiose- 29.4 92 0.0031 18.5 5.9 16 121-136 33-48 (109)
407 3utm_A Tankyrase-1; tankyrase, 29.4 90 0.0031 21.9 4.8 118 46-180 27-152 (351)
408 4b4t_S RPN3, 26S proteasome re 29.0 2.1E+02 0.0072 22.5 10.6 64 76-139 232-299 (523)
409 2y1l_E Darpin-8.4; hydrolase-i 28.5 1.1E+02 0.0037 18.9 6.4 116 46-178 17-139 (169)
410 2yru_A Steroid receptor RNA ac 27.9 1E+02 0.0035 18.5 8.0 63 77-139 21-90 (118)
411 3ctd_A Putative ATPase, AAA fa 27.2 1.5E+02 0.005 20.1 8.8 69 39-107 31-107 (213)
412 2znd_A Programmed cell death p 26.9 92 0.0031 19.3 4.1 58 109-171 92-149 (172)
413 1krq_A Ferritin; H-chain like 26.8 64 0.0022 20.5 3.2 106 56-170 51-156 (167)
414 2i2x_B MTAC, methyltransferase 26.7 32 0.0011 23.9 1.9 21 88-108 49-69 (258)
415 3v30_A DNA-binding protein rfx 26.4 1E+02 0.0034 19.0 4.2 9 52-60 11-19 (172)
416 3m0z_A Putative aldolase; MCSG 26.4 82 0.0028 21.6 3.6 64 40-103 173-246 (249)
417 3ka8_A Ferritin, middle subuni 26.3 1.3E+02 0.0046 19.3 4.7 19 56-74 60-78 (176)
418 2cih_A Ferritin heavy chain; a 26.1 1.1E+02 0.0037 19.9 4.3 66 56-127 64-129 (183)
419 3m6y_A 4-hydroxy-2-oxoglutarat 25.5 87 0.003 21.8 3.7 64 40-103 196-269 (275)
420 1q2z_A ATP-dependent DNA helic 24.9 44 0.0015 20.2 2.0 51 89-142 41-95 (120)
421 2i2x_B MTAC, methyltransferase 24.2 66 0.0023 22.3 3.1 45 114-159 41-85 (258)
422 2r9g_A AAA ATPase, central reg 24.1 1.7E+02 0.0057 19.7 10.1 64 78-142 14-85 (204)
423 4gq2_M Nucleoporin NUP120; bet 24.1 3.3E+02 0.011 23.1 10.5 49 111-159 898-950 (950)
424 3pvs_A Replication-associated 24.0 2.4E+02 0.0082 21.4 12.4 31 36-68 190-220 (447)
425 3v31_A Ankyrin repeat family A 23.7 1.3E+02 0.0045 18.3 6.8 15 50-64 10-24 (167)
426 3r88_A Anthranilate phosphorib 23.6 2.3E+02 0.0078 21.1 7.0 61 112-173 25-87 (377)
427 3cqc_A Nuclear pore complex pr 23.5 1.1E+02 0.0037 21.5 4.1 22 79-100 38-59 (270)
428 1n11_A Ankyrin; clathrin, BAND 23.2 2E+02 0.0068 21.2 5.8 50 46-99 17-68 (437)
429 2jp7_A MRNA export factor MEX6 22.9 36 0.0012 17.4 1.2 22 53-75 32-53 (57)
430 4ady_A RPN2, 26S proteasome re 22.5 3.7E+02 0.013 23.1 12.0 141 57-203 471-617 (963)
431 2jab_A H10-2-G3; HER2, darpin, 22.4 1.3E+02 0.0043 17.7 5.0 11 49-59 20-30 (136)
432 3no6_A Transcriptional activat 22.1 2E+02 0.0068 19.8 9.0 90 106-197 125-227 (248)
433 2qfz_A TBC1 domain family memb 21.8 2.3E+02 0.0079 20.4 7.9 110 92-205 189-311 (345)
434 3rjo_A Endoplasmic reticulum a 21.8 2.5E+02 0.0087 20.9 14.8 91 79-176 201-298 (419)
435 2cwy_A Hypothetical protein TT 21.5 1.2E+02 0.0042 17.2 5.4 50 122-173 13-67 (94)
436 2pm7_A Protein WEB1, protein t 21.5 2.6E+02 0.0089 21.0 12.1 19 186-204 342-360 (399)
437 1rw2_A ATP-dependent DNA helic 21.4 80 0.0027 20.0 2.8 51 89-142 72-126 (152)
438 1naf_A ADP-ribosylation factor 20.9 1.7E+02 0.0059 18.6 7.3 28 61-88 20-47 (158)
439 3qz3_A Ferritin; structural ge 20.5 1.8E+02 0.0063 18.8 5.9 108 55-171 59-166 (184)
440 1alv_A Calpain, S-camld; calci 20.3 1.6E+02 0.0056 18.1 7.8 8 128-135 114-121 (173)
441 1jog_A Hypothetical protein HI 20.2 1.2E+02 0.0041 18.9 3.5 72 112-187 42-117 (146)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.1e-40 Score=251.59 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=176.3
Q ss_pred ccccccccch-hhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCC---------hhHHHHHHHH
Q 045498 3 LTEQRFKGNF-HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR---------LKEAVELFDK 65 (207)
Q Consensus 3 m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~ 65 (207)
+.++++.+.+ .+++.+|++|++.|++++|+ ..|++||..+||+||.+|++.+. +++|.++|++
T Consensus 16 ~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~ 95 (501)
T 4g26_A 16 AKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95 (501)
T ss_dssp --------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH
Confidence 4556666554 46899999999999999998 88999999999999999998765 6889999999
Q ss_pred HHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh
Q 045498 66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145 (207)
Q Consensus 66 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 145 (207)
|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..+
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998743
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-37 Score=239.92 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=161.9
Q ss_pred HcCCCccH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC---------hhhHHHHHHHHH
Q 045498 33 KKGICLDV-FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG---------RFSAMALLQTLE 102 (207)
Q Consensus 33 ~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~ 102 (207)
+.+..+++ ..++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. .++|.++|++|.
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 45554443 46889999999999999999999999999999999999999999987654 678999999999
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 045498 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182 (207)
Q Consensus 103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 182 (207)
+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhh
Q 045498 183 FNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|++||.+|++.|++++|.+++++|
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHH
Confidence 999999999999999999999998
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=173.56 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=125.1
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVA---QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
-..||+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 045498 116 VIDGLCRVGRW-EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD------STSFNTVIQ 188 (207)
Q Consensus 116 li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~ 188 (207)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++.+..+.+ +++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 789999999999999999999999997766554 33333333 2244443 444455555
Q ss_pred HHHhcC
Q 045498 189 GFLVKN 194 (207)
Q Consensus 189 ~~~~~~ 194 (207)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 565544
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=172.35 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=114.4
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHh---CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
-..||++||++|++.|++++|.++|++|.+ .|+.||+.|||++|.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 151 LINGLCKKGMI-MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 151 li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+-++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 99999999985 7899999999999999999999998877766544433
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=3.9e-21 Score=151.05 Aligned_cols=194 Identities=11% Similarity=-0.083 Sum_probs=154.5
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH---H---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI---K---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~---~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
.+..+++.+...|.+.|++++|. . ...+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 45677888888888888888887 1 1123357788888888888888888888888887764 457778888888
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHh
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG--VVTYNILINGLCK 157 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~ 157 (207)
+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 8888888888888888887764 336778888888888888888888888888766 56676 6788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|++++|..+|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888888888888764 347788888888888888888888888775
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=6.6e-21 Score=149.79 Aligned_cols=195 Identities=10% Similarity=-0.050 Sum_probs=140.9
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH-------H---------------------------------cCCCccHHhHHHHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI-------K---------------------------------KGICLDVFVYSSLIN 48 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~---------------------------------~~~~~~~~~~~~ll~ 48 (207)
.++..+++.++..|.+.|++++|. . ...+.+..+|+.+..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 466777777777777777777766 1 112335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE 128 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (207)
.|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777776643 3456677777777777777777777777777664 3366777777777888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCchhHHHHH
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----GCFPD--STSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888777766433 6777888888888888888888888877765 55666 66788888888888888888888
Q ss_pred HHhh
Q 045498 203 LKKN 206 (207)
Q Consensus 203 ~~~m 206 (207)
++++
T Consensus 539 ~~~~ 542 (597)
T 2xpi_A 539 LNQG 542 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=3.1e-16 Score=108.47 Aligned_cols=192 Identities=15% Similarity=-0.030 Sum_probs=155.6
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH-----H-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI-----K-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~-----~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
+++...+..+...+.+.|++++|. . .--+.++..+..+...+.+.|++++|+..|++..+.. |.+...+..+-
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 567788899999999999999998 2 2334467889999999999999999999999998875 45677888899
Q ss_pred hhHhhh-----------cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 83 HDNWEK-----------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 83 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.++... |++++|...+++..+... -+...+..+..++...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 999999999999988753 367888999999999999999999999999887 588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
..++...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999998863 34678889999999999999999998875
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=3.6e-16 Score=116.86 Aligned_cols=163 Identities=16% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++++.+... .+..++..+...
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3344444445555555555555555544432 22345666666667777777777777777666542 245566677777
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+..++.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 235666777777777777777777777776654 233456677777777777777777
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
.+.++++
T Consensus 359 ~~~~~~a 365 (388)
T 1w3b_A 359 LMHYKEA 365 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=1e-15 Score=114.45 Aligned_cols=164 Identities=18% Similarity=0.045 Sum_probs=112.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 4445555555555555555555555555443 2234455555555555566666666665555443 2246677788888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
+.+.|++++|.+.++++.+.+.. +..++..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888876433 5667888888888888888888888888876 345777888888888888888888
Q ss_pred HHHHHhhC
Q 045498 200 SSFLKKNM 207 (207)
Q Consensus 200 ~~~~~~m~ 207 (207)
.+.+++++
T Consensus 325 ~~~~~~al 332 (388)
T 1w3b_A 325 VRLYRKAL 332 (388)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88888763
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.74 E-value=4.3e-16 Score=118.38 Aligned_cols=193 Identities=11% Similarity=-0.009 Sum_probs=164.8
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
.+...+..+...+.+.|++++|+ ....+.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34567888999999999999998 22234578899999999999999999999999999875 456788999999
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHH------------HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNI---EVYSLV------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
++...|++++|...|+++.+.... +. ..+..+ ...+.+.|++++|.+.++.+.+... .+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 999999999999999999886532 34 555555 4448899999999999999998754 378889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|.+.++++
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999998763 457889999999999999999999999876
No 11
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=1.4e-15 Score=106.27 Aligned_cols=193 Identities=16% Similarity=0.112 Sum_probs=149.3
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
.+...|..+...+...|++++|. ....+.+...+..+...+.+.|++++|+..|++..+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567778888889999999888 22334468889999999999999999999999998764 456788899999
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
.+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988875 346778999999999999999999999999887433 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
|...+++..+.. +.+..++..+..++...|++++|.++++++
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999998773 346788999999999999999999999875
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=4.2e-15 Score=104.56 Aligned_cols=192 Identities=14% Similarity=-0.046 Sum_probs=163.3
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
...+..+...+...|++++|. ....+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 467888888899999998887 11224467889999999999999999999999998774 44677889999999
Q ss_pred hhhcChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
...|++++|...+++..+.+..| +...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733334 5678888999999999999999999999887533 678899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...++...+.. +.+...+..+...+...|++++|.++++++
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999988763 356778889999999999999999999875
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=2.7e-15 Score=111.15 Aligned_cols=192 Identities=10% Similarity=-0.101 Sum_probs=127.9
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
...+..+...+.+.|++++|+ -...+.+..+|..+...+.+.|++++|+..|++..+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344666666666777777666 11123345666667777777777777777777766553 33455666666666
Q ss_pred hhhcChhhHHHHHHHHHhCCC------------------------------------------Cc---cHHHHHHHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKY------------------------------------------EL---NIEVYSLVIDGL 120 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~------------------------------------------~~---~~~~~~~li~~~ 120 (207)
...|++++|...+++..+... .| +..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 666666666666666544311 11 466777777777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
.+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888877766432 56677778888888888888888888777652 234677777778888888888888
Q ss_pred HHHHhh
Q 045498 201 SFLKKN 206 (207)
Q Consensus 201 ~~~~~m 206 (207)
+.++++
T Consensus 302 ~~~~~a 307 (365)
T 4eqf_A 302 SNFLTA 307 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 14
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=9.6e-15 Score=100.65 Aligned_cols=195 Identities=9% Similarity=-0.095 Sum_probs=164.1
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
.+...+..+...+...|++++|. ....+.+...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34567888899999999999998 12223457889999999999999999999999998764 456778899999
Q ss_pred hHhhh-cChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 84 DNWEK-QGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 84 ~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
.+... |++++|...+++..+.+..| +...+..+..++.+.|++++|.+.+++..+.... +...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998833233 4678888999999999999999999999887533 578899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++|...++...+.....+...+..+...+...|+.+.+..+++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999987643257777888888899999999999988764
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=2.4e-15 Score=114.29 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=160.1
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHH
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNP 80 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ 80 (207)
.+..++..+..+|...|++++|. -...+.+..++..+..++.+.|++++|...|+++.+.. +.+. ..+..
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 136 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQ 136 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 45778999999999999999998 11223457889999999999999999999999998864 3344 55555
Q ss_pred HH------------hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 81 LI------------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 81 ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
+. ..+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+... .+..++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 214 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 53 34889999999999999998765 44788999999999999999999999999987643 368899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH------------HHHHHhcCchhHHHHHHHhh
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV------------IQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m 206 (207)
..+...|...|++++|...|+++.+.. +.+...+..+ ...+.+.|++++|.++++++
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999998762 2244444444 78899999999999999876
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4.2e-15 Score=107.28 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=111.9
Q ss_pred hhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhc
Q 045498 14 VYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQ 89 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~ 89 (207)
....+..+|...|+++.|+ +..-+|+..++..+...+...++.++|++.++++...+..| +...+..+-.++...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 3344566777777777777 23344556666667777777777777777777776655333 3344444556666677
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHH
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY---NILINGLCKKGMIMEADK 166 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~ 166 (207)
++++|...+++ +.+...+..+...+.+.|++++|.+.++.+.+.. |+.... ..++..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 77777776665 3455566666666777777777777777666653 332111 112233334466677777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+|+++.+. .+.+...++.+..++.+.|++++|.+.+++.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766665 3445666666666666777777776666653
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=3e-14 Score=105.45 Aligned_cols=192 Identities=9% Similarity=-0.096 Sum_probs=137.5
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
...+..+...+.+.|++++|. -...+.+..++..+..++.+.|++++|+..|++..+.. +.+..++..+...+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344566666677777777766 12223355666666677777777777777777766553 33555666666666
Q ss_pred hhhcChhhHHHHHHHHHhCCC-----------------------------------------------Cc---cHHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKY-----------------------------------------------EL---NIEVYSL 115 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~ 115 (207)
...|++++|...+++..+... .| +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 666666666666665544321 12 4677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+...+.+.|++++|...+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+..++..+..++.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 888999999999999999988876432 57788889999999999999999999988763 3467788889999999999
Q ss_pred hhHHHHHHHhh
Q 045498 196 TDRASSFLKKN 206 (207)
Q Consensus 196 ~~~a~~~~~~m 206 (207)
+++|.+.++++
T Consensus 301 ~~~A~~~~~~a 311 (368)
T 1fch_A 301 HREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 18
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1e-14 Score=102.53 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=156.8
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--Ccc----hhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAE----LVTY 78 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~ 78 (207)
...|..+...+...|++++|. ... .+...|..+..++...|++++|...+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456777888888889988888 333 6778888888899999999999999988876421 111 4678
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhCC-------------------------CCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERDK-------------------------YELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
..+...+...|++++|...+++..+.. .+.+...+..+...+...|++++|.+.+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888999999998888877632 1234567888889999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++..+.... +...+..+...+.+.|++++|...++...+.. +.+..++..+..++...|++++|.+.+++.
T Consensus 163 ~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 163 TEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999887543 67889999999999999999999999998873 346788999999999999999999999875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.8e-14 Score=103.88 Aligned_cols=192 Identities=9% Similarity=-0.136 Sum_probs=123.2
Q ss_pred hhhhHHHHHhhhhhh-hHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 12 FHVYGIRINGMCKIR-EIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g-~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
...+..+...+...| ++++|. ... .+.+...|..+...+...|++++|+..|++..+.. +.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 445666666666666 666665 111 22245566666777777777777777777766553 2334555556666
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--------LVPGVVTYNILINGLC 156 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~li~~~~ 156 (207)
+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.. ......++..+...+.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 777777777777777766654 3355667777777777777777777777665531 1223456777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+.|++++|...+++..+.. +.+..++..+..++.+.|++++|.+++++.
T Consensus 248 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7777777777777776653 235566777777777777777777777664
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=7.9e-15 Score=101.37 Aligned_cols=165 Identities=14% Similarity=-0.004 Sum_probs=147.3
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
++++..+..+...+.+.|++++|+..|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677889999999999999999999999998875 5577889999999999999999999999998875 3367888999
Q ss_pred HHHHhcC-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498 117 IDGLCRV-----------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT 185 (207)
Q Consensus 117 i~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (207)
...+.+. |++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 9999999999999987543 67788999999999999999999999999887 78899999
Q ss_pred HHHHHHhcCchhHHHHHHHhh
Q 045498 186 VIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~m 206 (207)
+..++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999875
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=2.5e-14 Score=96.07 Aligned_cols=164 Identities=13% Similarity=0.032 Sum_probs=124.4
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
++.+|..+-..+.+.|++++|++.|++..+.. |-+..++..+..++...|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56677888888888888888888888877764 445667777888888888888888888877766433 5566777777
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
.+...++++.+.+.+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 778888888888888877776433 56677778888888888888888888877763 3356778888888888888888
Q ss_pred HHHHHHhh
Q 045498 199 ASSFLKKN 206 (207)
Q Consensus 199 a~~~~~~m 206 (207)
|.+.|++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.5e-14 Score=105.24 Aligned_cols=196 Identities=10% Similarity=-0.069 Sum_probs=165.4
Q ss_pred ccccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498 7 RFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP 80 (207)
Q Consensus 7 ~~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 80 (207)
++..+...+..+...+...|++++|. ....+.+...+..+...+.+.|++++|..+++++.+.. +.+..++..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 45667778888999999999999999 22234455677778889999999999999999998864 456778899
Q ss_pred HHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 81 LIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 81 ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
+...+...| ++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999998875 335778999999999999999999999999887543 5677888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++++|...+++..+.. +.+..++..+...+...|++++|..++++.
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999998863 446788999999999999999999999875
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.9e-14 Score=102.86 Aligned_cols=189 Identities=7% Similarity=0.011 Sum_probs=151.6
Q ss_pred cccchhhhHHHHHhhhhhhhHHHHH-------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 8 ~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
-.|+..++..+...+...|+.++|+ ..+..| ++..+..+...+.+.|++++|++.+++ +.+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 3567778888889999999988887 334345 566677777899999999999999987 46778899
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHH---HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
.+...+.+.|++++|...++++.+.. |+.. .....+..+...|++++|..+|+++.+.. +.+...++.+..++.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99999999999999999999998875 3322 11233455556789999999999999874 347888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH-HHHHHHhh
Q 045498 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR-ASSFLKKN 206 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m 206 (207)
+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 212 ~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988763 3477889999999999999876 56777654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.7e-14 Score=103.82 Aligned_cols=190 Identities=10% Similarity=-0.095 Sum_probs=124.0
Q ss_pred hhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH-----
Q 045498 13 HVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL----- 81 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----- 81 (207)
.++..+...+...|++++|. ....+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 134 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADV 134 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHH
Confidence 34444445555555555544 11112234445555555555555555555555555432 1122222222
Q ss_pred ---------Hh-hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 82 ---------IH-DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 82 ---------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.. .+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 212 (327)
T 3cv0_A 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKL 212 (327)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 11 2555566666666666655543 236778888889999999999999999998877432 57788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.++++
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999988763 346788889999999999999999998865
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.66 E-value=7.6e-14 Score=102.55 Aligned_cols=193 Identities=11% Similarity=-0.019 Sum_probs=162.9
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
|+..+..+...+...|++++|+ -...+.++.++..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567888889999999999999 12234467889999999999999999999999998864 4466889999999
Q ss_pred HhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHH------------HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYE--LNIEVYSLV------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
+...|++++|...+++..+.... .+...+..+ ...+...|++++|.+.++++.+.... +...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 99999999999999999886430 244455444 57889999999999999999887543 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999998863 457789999999999999999999998865
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.5e-13 Score=94.61 Aligned_cols=167 Identities=11% Similarity=-0.029 Sum_probs=144.5
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
+.++..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3456778899999999999999999999998864 4567789999999999999999999999988765 3467889999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 117 IDGLCRV-GRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 117 i~~~~~~-~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
...+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999988433333 6778889999999999999999999998863 335788999999999999
Q ss_pred chhHHHHHHHhh
Q 045498 195 ETDRASSFLKKN 206 (207)
Q Consensus 195 ~~~~a~~~~~~m 206 (207)
++++|.+++++.
T Consensus 162 ~~~~A~~~~~~~ 173 (225)
T 2vq2_A 162 QLGDADYYFKKY 173 (225)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=2.2e-14 Score=104.28 Aligned_cols=193 Identities=12% Similarity=-0.071 Sum_probs=156.1
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhC
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSL--------------IN-GLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~ 69 (207)
+..++..+...+...|++++|. .....| +...+..+ .. .+...|++++|...++++.+.
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 5678888999999999999998 111122 22333333 22 377889999999999999887
Q ss_pred CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498 70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149 (207)
Q Consensus 70 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 149 (207)
. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+.
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 244 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMY 244 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 5 4577889999999999999999999999988775 346788999999999999999999999999887533 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEKGCFP-----------DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+...+.+.|++++|...+++..+..... +..++..+..++.+.|++++|..++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999988763221 4778999999999999999999988764
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=1.6e-13 Score=101.58 Aligned_cols=193 Identities=9% Similarity=-0.090 Sum_probs=155.8
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI------------- 71 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------- 71 (207)
+..++..+...+.+.|++++|. ..-.+.+..++..+...+...|++++|...|+++.+...
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 4567788888888888888887 111234677788888888888888888888877765321
Q ss_pred ----------------------------------Cc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 72 ----------------------------------TA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 72 ----------------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
.| +..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 12 45678888899999999999999999988764 34678999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP----------DSTSFN 184 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------~~~~~~ 184 (207)
.+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|...|+...+..... ...+|.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 999999999999999999999988743 367889999999999999999999999987652111 268899
Q ss_pred HHHHHHHhcCchhHHHHHHHh
Q 045498 185 TVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.+..++...|++++|..++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988764
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=1.2e-13 Score=102.36 Aligned_cols=193 Identities=9% Similarity=-0.077 Sum_probs=152.8
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI------------- 71 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------- 71 (207)
+..+|..+...|.+.|++++|+ -.-.+.+..+|..+..++.+.|++++|+..|+++.+...
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence 4567777788888888888777 111233466777777778888888777777777654210
Q ss_pred -----------------------------Cc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 72 -----------------------------TA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 72 -----------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
.| +..++..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 11 56788889999999999999999999988875 3468899999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--------CChhhHHHHHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC---F--------PDSTSFNTVIQ 188 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~--------p~~~~~~~l~~ 188 (207)
|.+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|...|++..+... . .+..+|..+..
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 99999999999999999887433 588899999999999999999999999876421 1 13678999999
Q ss_pred HHHhcCchhHHHHHHHh
Q 045498 189 GFLVKNETDRASSFLKK 205 (207)
Q Consensus 189 ~~~~~~~~~~a~~~~~~ 205 (207)
++...|+.+.+.++.++
T Consensus 336 ~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 99999999999887764
No 30
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=1.7e-13 Score=91.47 Aligned_cols=161 Identities=14% Similarity=0.024 Sum_probs=90.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
..|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344455555556666666666666555432 2344555555556666666666666666655443 22445555555666
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
...|++++|.+.+++..+... .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666555432 244555555566666666666666666655542 224455556666666666666666
Q ss_pred HHHHh
Q 045498 201 SFLKK 205 (207)
Q Consensus 201 ~~~~~ 205 (207)
+++++
T Consensus 165 ~~~~~ 169 (186)
T 3as5_A 165 PHFKK 169 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.7e-13 Score=95.29 Aligned_cols=164 Identities=13% Similarity=-0.032 Sum_probs=143.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
+..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 6778889999999999999999999998764 4567889999999999999999999999988775 3367889999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998833344 56778889999999999999999999998863 3367889999999999999999
Q ss_pred HHHHHHhh
Q 045498 199 ASSFLKKN 206 (207)
Q Consensus 199 a~~~~~~m 206 (207)
|..+++++
T Consensus 194 A~~~~~~~ 201 (252)
T 2ho1_A 194 ARQYYDLF 201 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.61 E-value=7.2e-13 Score=97.32 Aligned_cols=192 Identities=13% Similarity=0.046 Sum_probs=157.0
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---cchhhHHHH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT---AELVTYNPL 81 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l 81 (207)
+..++..+...+...|++++|. ... .+.+...+..+...+...|++++|...|++..+.. + .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHH
Confidence 4678888999999999999998 111 23366889999999999999999999999998864 2 344455444
Q ss_pred ------------HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498 82 ------------IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN 149 (207)
Q Consensus 82 ------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 149 (207)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 578889999999999999998775 347788999999999999999999999999987533 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH------------HHHHHHHhcCchhHHHHHHHhh
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN------------TVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+...+...|++++|...++...+.. +.+..++. .+...+.+.|++++|.+.++++
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998763 22333333 2366788999999999998875
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=6.4e-16 Score=115.56 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=37.5
Q ss_pred cchhhhHHHHHhhhhhhhHHHHHH-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
+++.+|..+..++.+.|++++|++ ---.+|...|..++.++...|++++|+.+++...+. .+++.+.+.++.+|.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh
Confidence 344577777777777777777771 111346667777777777777777777766555443 33455566666666666
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+
T Consensus 108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 66666555553 244455555556666566666555555543 24555555555555555555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 169 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
..+ .++.+|..++.+|+..|+++.|
T Consensus 172 ~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 172 RKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp HHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 544 1444555555555444444444
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=3.2e-15 Score=111.82 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=88.3
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
.+|..+|..++.++...|++++|+ .....+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+..
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 367788999999999999999988 22235557888899999999999999888874 367779999999
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
.|...|.+++|...|..+ ..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 999999999999999865 37889999999999999999999887 277899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
|...... +..++.-...++..|.+.|++++|..+++..+
T Consensus 196 A~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 196 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9655443 22344445578888999999999998888653
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.3e-13 Score=99.59 Aligned_cols=197 Identities=14% Similarity=0.023 Sum_probs=157.4
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-------H----c---CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-------K----K---GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------ 69 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-------~----~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 69 (207)
.+..++..+...+...|++++|. . . ..+....++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34568888999999999999988 1 1 23445677889999999999999999999998754
Q ss_pred C-CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC------CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 045498 70 G-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------KY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-- 139 (207)
Q Consensus 70 ~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 139 (207)
+ .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 2334567888999999999999999999988764 22 224567888899999999999999999988764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------------------
Q 045498 140 ----GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK---------------------------------------- 174 (207)
Q Consensus 140 ----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------- 174 (207)
+..| ...++..+...|...|++++|...+++..+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888999999999999999999998753
Q ss_pred --------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 175 --------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 175 --------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+.+..++..+..+|.+.|++++|.+++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11224567888999999999999999999875
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-13 Score=106.32 Aligned_cols=191 Identities=16% Similarity=0.057 Sum_probs=97.3
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
..++..+...+...|++++|. ....+.+..++..+...+...|++++|...|++..+.. +.+..++..+...+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence 334444444444444444444 11112234445555555555555555555555555442 22344555555555
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHh---
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PG----VVTYNILINGLCK--- 157 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~--- 157 (207)
...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.++.+.+.... ++ ...+..+...+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 55555555555555554432 223445555555555666666666665555443211 11 2255555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.|++++|...++...+.. +.+..++..+...+.+.|++++|.+.+++
T Consensus 428 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp TTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666666666666655542 22445555666666666666666666554
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.4e-12 Score=87.42 Aligned_cols=162 Identities=17% Similarity=0.062 Sum_probs=139.4
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
-++.+|..+-..|.+.|++++|+ .... +-++.++..+..++.+.|++++|+..+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 35678999999999999999999 1222 3367889999999999999999999999998765 445677888888
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 163 (207)
.+...++++.+...+.+..+.. +.+...+..+...+.+.|++++|.+.|++..+.... +..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999988765 336788999999999999999999999999987543 67889999999999999999
Q ss_pred HHHHHHHHHHc
Q 045498 164 ADKLLVQMKEK 174 (207)
Q Consensus 164 a~~~~~~m~~~ 174 (207)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998875
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3e-13 Score=104.17 Aligned_cols=193 Identities=14% Similarity=-0.051 Sum_probs=163.0
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
+..++..+...+...|++++|. .....|+..++..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 4567888889999999999998 11223338889999999999999999999999998864 45677899999999
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
...|++++|...+++..+.... +...+..+...+.+.|++++|.+.++.+.+.... +...+..+...+.+.|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999887533 6678999999999999999999999999887433 6778999999999999999999
Q ss_pred HHHHHHHHcCC-CCC----hhhHHHHHHHHHh---cCchhHHHHHHHhh
Q 045498 166 KLLVQMKEKGC-FPD----STSFNTVIQGFLV---KNETDRASSFLKKN 206 (207)
Q Consensus 166 ~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~m 206 (207)
..++.+.+... .++ ..++..+..++.. .|++++|.+.++++
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99999876521 112 3389999999999 99999999999875
No 39
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=4.9e-13 Score=107.22 Aligned_cols=164 Identities=13% Similarity=-0.051 Sum_probs=142.4
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
++.+|+.|-..+.+.|++++|++.|++..+.. +-+..++..+-.++.+.|++++|...|++..+... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 46789999999999999999999999998864 44567889999999999999999999999888753 36788999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|...|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999887544 67889999999999999999999999988863 2356889999999999999999
Q ss_pred HHHHHHhh
Q 045498 199 ASSFLKKN 206 (207)
Q Consensus 199 a~~~~~~m 206 (207)
|.+.+++.
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.8e-13 Score=95.47 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=127.0
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
..++..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4456778888889999999999999999998864 4567888899999999999999999999988775 3467889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET 196 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 196 (207)
...+...|++++|.+.+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887543 67889999999999999999999999998763 34678899999999999999
Q ss_pred hHHHHHHHhh
Q 045498 197 DRASSFLKKN 206 (207)
Q Consensus 197 ~~a~~~~~~m 206 (207)
++|.++++++
T Consensus 176 ~~A~~~~~~~ 185 (243)
T 2q7f_A 176 DEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6e-13 Score=93.49 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=141.5
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc----HHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN----IEV 112 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~ 112 (207)
....|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999877 77889999999999999999999999998765322 11 578
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCC------------------------CCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKG------------------------LVP-GVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g------------------------~~~-~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
+..+...+.+.|++++|.+.+++..+.. ..| +...+..+...+...|++++|...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999999999999999999988732 122 355778888999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 168 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+++..+.. +.+..++..+..++...|++++|.+.+++.
T Consensus 162 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 162 YTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998873 346788999999999999999999999875
No 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.55 E-value=1e-12 Score=101.93 Aligned_cols=195 Identities=15% Similarity=0.012 Sum_probs=131.6
Q ss_pred ccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 9 KGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 9 ~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
.|+..++..+...+...|++++|. ....+.+..+|..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 455566666777777777777776 11123346667777777777777777777777777654 33456677777
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHh
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCK 157 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~ 157 (207)
.++...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... .....+......+.+
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777776654 334566777777777777777777777776554211 111223344455666
Q ss_pred c----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 158 K----------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 158 ~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
. |++++|...|+...+.. +.+..++..+..++.+.|++++|.+.+++.
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6 78888888888777652 335677888888888889999888888764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=3.5e-13 Score=95.70 Aligned_cols=191 Identities=14% Similarity=-0.135 Sum_probs=117.1
Q ss_pred chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
+..++..+...+...|++++|. -...+.+..+|..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3456667777777777777776 11122346667777777777777777777777776653 3345667777777
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
+...|++++|...+++..+.. |+.......+..+...|++++|...++....... ++... ..++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWG-WNIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTH-HHHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHH-HHHHHHHHHhcCHHHH
Confidence 777777777777777776643 2322333333444555777777777765555421 22222 2345555555666666
Q ss_pred HHHHHHHHHcCCC--C-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 165 DKLLVQMKEKGCF--P-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 165 ~~~~~~m~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...++...+.... | +..++..+...+.+.|++++|...+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666655433110 0 1466777788888888888888887764
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.8e-11 Score=87.11 Aligned_cols=181 Identities=12% Similarity=-0.086 Sum_probs=90.1
Q ss_pred hhhHHHHHhhhhhhhHHHHH---HcCC-CccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 13 HVYGIRINGMCKIREIDSAI---KKGI-CLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~---~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
.++..+-..+...|++++|. .... +-++..+..+-..+.. .+++++|+..|++..+.+ +...+..+-..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 34444455555555555555 1111 2233444555555555 555555555555555543 33444445555
Q ss_pred Hhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 85 NWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 85 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
+.. .+++++|...+++..+.+ +...+..+-..|.. .+++++|.+.+++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 555 555555555555555443 33444555555555 555555555555555543 3344444444554
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498 157 K----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK 205 (207)
Q Consensus 157 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 205 (207)
. .+++++|...|+...+.+ +...+..+...|.. .+++++|.+++++
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4 555555555555554442 33444445555555 5555555555543
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=7.2e-12 Score=83.44 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=137.3
Q ss_pred hhhhHHHHHhhhhhhhHHHHH---H---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 12 FHVYGIRINGMCKIREIDSAI---K---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~---~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
...|..+...+...|++++|. . ...+.+..++..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 356777888899999999999 2 2223467889999999999999999999999998764 45677888899999
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+... .+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988775 44778889999999999999999999999988753 36788999999999999999999
Q ss_pred HHHHHHHHc
Q 045498 166 KLLVQMKEK 174 (207)
Q Consensus 166 ~~~~~m~~~ 174 (207)
..++...+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998765
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.3e-12 Score=91.42 Aligned_cols=190 Identities=10% Similarity=0.003 Sum_probs=149.7
Q ss_pred hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh----hHHHH
Q 045498 12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV----TYNPL 81 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l 81 (207)
...+......+...|++++|+ -...+.+...+..+..++...|++++|+..+++..+.. ++.. +|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 345566778888999999998 12223345688899999999999999999999998843 3333 37888
Q ss_pred HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
...+...|++++|...+++..+... .+..++..+...|...|++++|.+.+++..+.... +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888753 36678999999999999999999999999887433 566777777344445699
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc---hhHHHHHHHhh
Q 045498 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE---TDRASSFLKKN 206 (207)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m 206 (207)
++|...|++..+.. +.+...+..+..++...|+ +++|...+++.
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 99999999998863 3346778888888888887 77777777654
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.2e-12 Score=100.64 Aligned_cols=191 Identities=8% Similarity=-0.127 Sum_probs=140.0
Q ss_pred chhhhHHHHHhhhhhhhH-HHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498 11 NFHVYGIRINGMCKIREI-DSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~-~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 83 (207)
+...+..+...+...|++ ++|+ .... +-+...|..+..+|.+.|++++|...|++..+.. |+...+..+-.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 456677777777788888 7777 1112 2346778888888888888888888888887764 55677777777
Q ss_pred hHhhh---------cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCC--CC
Q 045498 84 DNWEK---------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV--------GRWEEARKKLDQLSEKGLV--PG 144 (207)
Q Consensus 84 ~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~g~~--~~ 144 (207)
++... |++++|...+++..+.. +-+...|..+..+|... |++++|.+.|++..+.... -+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 78777 88888888888877764 23567777777787777 7888888888888776320 26
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
...|..+..+|...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7778888888888888888888888877663 23556677777888888888888765543
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2.7e-11 Score=87.95 Aligned_cols=192 Identities=10% Similarity=-0.010 Sum_probs=149.9
Q ss_pred chhhhHHHHHhhhh-------hhhH-------HHHH-----HcC-CCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498 11 NFHVYGIRINGMCK-------IREI-------DSAI-----KKG-ICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 11 ~~~~~~~ll~~~~~-------~g~~-------~~a~-----~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 69 (207)
++..|..+...+.. .|++ ++|. ... +.| +...|..+...+.+.|++++|..+|++..+.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 34466666666543 3664 6666 222 344 4568999999999999999999999999985
Q ss_pred CCCcc-hh-hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498 70 GITAE-LV-TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL-CRVGRWEEARKKLDQLSEKGLVPGVV 146 (207)
Q Consensus 70 ~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~ 146 (207)
.|+ .. +|..+...+.+.|++++|..+|++..+... .+...|....... ...|++++|.++|+...+.... +..
T Consensus 129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (308)
T 2ond_A 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPE 204 (308)
T ss_dssp --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHH
Confidence 443 33 799999999999999999999999988753 3445555443332 2379999999999999876433 678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKG-CFP--DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|..+++++
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999999999999999863 455 4567888899999999999999998875
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=6.6e-12 Score=87.02 Aligned_cols=154 Identities=10% Similarity=-0.040 Sum_probs=103.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
|+..+......+.+.|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 456666677777777777777777777776653355566666777777777777777777777665422 5566777777
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGV-------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD---STSFNTVIQ 188 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 188 (207)
++.+.|++++|.+.+++..+.... +. ..|..+-..+...|++++|...|+...+. .|+ ..++..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 777777777777777777665322 23 34666666677777777777777777654 343 456666666
Q ss_pred HHHhcCch
Q 045498 189 GFLVKNET 196 (207)
Q Consensus 189 ~~~~~~~~ 196 (207)
++...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666666
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.51 E-value=2.9e-12 Score=99.31 Aligned_cols=190 Identities=14% Similarity=-0.034 Sum_probs=150.9
Q ss_pred hhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 14 VYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
++..+...+...|++++|. .....|+..++..+...+...|++++|...|++..+.. +.+..++..+...+...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 4666667777888888888 22335567888889999999999999999999998765 45677888999999999
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
|++++|...+++..+... .+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|...|
T Consensus 324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999887653 35678888999999999999999999998887533 5778889999999999999999999
Q ss_pred HHHHHcC-----CCCChhhHHHHHHHHHhc----------CchhHHHHHHHhh
Q 045498 169 VQMKEKG-----CFPDSTSFNTVIQGFLVK----------NETDRASSFLKKN 206 (207)
Q Consensus 169 ~~m~~~~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m 206 (207)
+.+.+.. .......+..+...+... |++++|...+++.
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 9987642 111222344555677777 9999999998875
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.5e-12 Score=90.48 Aligned_cols=192 Identities=11% Similarity=-0.014 Sum_probs=153.2
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-----HcCCCcc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 12 FHVYGIRINGMCKIREIDSAI-----KKGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
...+..+...|...|++++|+ .....++ ..+|..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 115 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG 115 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 448888889999999999998 1112233 3348899999999999999999999998864 44668899999
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM-- 160 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-- 160 (207)
..+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++..+.... +...+..+...+...|+
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcch
Confidence 99999999999999999988774 335667777772444455999999999999987433 46778888888888888
Q ss_pred -HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 161 -IMEADKLLVQMKEKG-CFPD------STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 161 -~~~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+++|...+++..+.. -.|+ ..+|..+...|...|++++|.+++++.
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888999998887642 1233 257888999999999999999999875
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=2.4e-12 Score=91.35 Aligned_cols=180 Identities=12% Similarity=-0.094 Sum_probs=144.1
Q ss_pred hhhhhhhHHHHH-------HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498 21 GMCKIREIDSAI-------KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90 (207)
Q Consensus 21 ~~~~~g~~~~a~-------~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 90 (207)
.....|++++|+ .... +.+..++..+...+...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 445668888877 2211 2257789999999999999999999999998875 4567899999999999999
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
+++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+.. |+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998865 3367889999999999999999999999998863 5555555556666778999999999988
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 171 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..... +++... ..+...+...++.++|.+.+++.
T Consensus 170 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 170 HFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHH
Confidence 87762 334444 44777788888889998888764
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=5.5e-12 Score=96.95 Aligned_cols=166 Identities=12% Similarity=-0.015 Sum_probs=146.7
Q ss_pred CccHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRL-KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
+.+...+..+-..+...|++ ++|+..|++..+.. +.+...|..+-.++...|++++|...|++..+.. |+...+..
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 175 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQN 175 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHH
Confidence 44788899999999999999 99999999998875 4467899999999999999999999999998875 56788999
Q ss_pred HHHHHhcC---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC-
Q 045498 116 VIDGLCRV---------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK--------GMIMEADKLLVQMKEKGCF- 177 (207)
Q Consensus 116 li~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~- 177 (207)
+...+... |++++|.+.+++..+.... +...|..+..+|... |++++|...|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 99999999 9999999999999987544 688899999999998 9999999999999986210
Q ss_pred -CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 178 -PDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 178 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-+...|..+..+|...|++++|.+.+++.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 37889999999999999999999999875
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=7.7e-11 Score=83.84 Aligned_cols=181 Identities=9% Similarity=-0.137 Sum_probs=155.5
Q ss_pred chhhhHHHHHhhhh----hhhHHHHH-------HcCCCccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcch
Q 045498 11 NFHVYGIRINGMCK----IREIDSAI-------KKGICLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAEL 75 (207)
Q Consensus 11 ~~~~~~~ll~~~~~----~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~ 75 (207)
+...+..+...|.. .+++++|. ..+ ++..+..+-..|.. .+++++|+..|++..+.+ +.
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 110 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA 110 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc
Confidence 34567778888888 99999988 333 77888999999999 999999999999999876 66
Q ss_pred hhHHHHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhh
Q 045498 76 VTYNPLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVT 147 (207)
Q Consensus 76 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 147 (207)
..+..+-..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 184 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPG 184 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 788888888888 999999999999998876 55677778888887 899999999999998874 5678
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHhh
Q 045498 148 YNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKKN 206 (207)
Q Consensus 148 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 206 (207)
+..+...|.. .+++++|...|+...+.+ +...+..+...|.+ .+++++|.+++++.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 8889999999 999999999999998874 36778889999998 99999999999864
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=4.2e-13 Score=95.38 Aligned_cols=170 Identities=16% Similarity=0.001 Sum_probs=132.4
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------GI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---- 105 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---- 105 (207)
+....++..+...+...|++++|+..+++..+. +- +....++..+...+...|++++|...+++..+..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 335677888999999999999999999988754 22 2345678888889999999999999998876541
Q ss_pred ---CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 045498 106 ---YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK------GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK- 174 (207)
Q Consensus 106 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 174 (207)
.+....++..+...+...|++++|.+.+++..+. +-.| ...++..+...|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1234677888889999999999999999888765 1122 3567888889999999999999999887753
Q ss_pred -----------------------------------------------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 175 -----------------------------------------------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 175 -----------------------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+....++..+...|...|++++|.+++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11123457888999999999999999999875
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.1e-11 Score=92.68 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=154.6
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 13 HVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
..|..+...+.+.|++++|+ .....| +...|+.+-.++.+.|+ +++|+..|++..+.. +-+...|+.+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 46777888888889999988 222233 57788899999999997 999999999998875 45678899999999
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEA 164 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a 164 (207)
...|++++|+..+++..+.... +...|..+..++.+.|++++|...++++.+.... +...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999887633 7888999999999999999999999999988654 78889999999988 6665777
Q ss_pred -----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--chhHHHHHHHh
Q 045498 165 -----DKLLVQMKEKGCFPDSTSFNTVIQGFLVKN--ETDRASSFLKK 205 (207)
Q Consensus 165 -----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~ 205 (207)
...|++..+.. +-+...|..+...+...| ++++|.+.+++
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 47788877753 235678888888888877 68888887765
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=3.6e-11 Score=75.68 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56777888888899999999999887764 3456677778888888889999999888887765 335667788888888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888999998888888776432 5677788888888888888888888887765
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=2.5e-11 Score=90.62 Aligned_cols=190 Identities=9% Similarity=0.013 Sum_probs=156.6
Q ss_pred hhhhHHHHHhhhhhhh-HHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 12 FHVYGIRINGMCKIRE-IDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~-~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
...|+.+..++...|+ +++|+ .... +-+...|+.+-.++.+.|++++|+..|++..+.. +-+...|..+-.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~ 209 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHH
Confidence 4678888899999997 99998 1222 3367889999999999999999999999999875 5577899999999
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc-CCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-VGRWEEA-----RKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
+...|++++|+..+++..+.... +...|+.+..++.+ .|..++| .+.+++..+.... +...|+.+...+...
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT
T ss_pred HHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHcc
Confidence 99999999999999999988643 78899999999998 6665777 5888888887544 677899989989888
Q ss_pred C--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------chhHHHHHHHhh
Q 045498 159 G--MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN---------ETDRASSFLKKN 206 (207)
Q Consensus 159 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~m 206 (207)
| ++++|.+.+.++ +. .+.+...+..+..+|.+.| .+++|.++++++
T Consensus 288 g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp CGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 8 689999999888 33 3446678889999998874 358999998875
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-11 Score=89.20 Aligned_cols=170 Identities=15% Similarity=0.045 Sum_probs=138.2
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-----
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-------GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD----- 104 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 104 (207)
+.+..++..+...+...|++++|..+|++..+. ..+....++..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998763 23445567888999999999999999999987754
Q ss_pred -C-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 045498 105 -K-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK------GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK- 174 (207)
Q Consensus 105 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 174 (207)
+ .+....++..+...+...|++++|.+.+++..+. +..| ....+..+...+...|++++|..++++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2334678888999999999999999999988764 2222 3556888899999999999999999998764
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 175 -----GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 175 -----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+..| ...++..+..++...|++++|.++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2223 3457888999999999999999999875
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=2e-11 Score=97.98 Aligned_cols=160 Identities=13% Similarity=-0.043 Sum_probs=139.5
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 84 (207)
+...|+.+-..|.+.|++++|+ .....| +..+|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3578999999999999999999 222334 57889999999999999999999999998875 4457789999999
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
+...|++++|.+.|++..+... -+...++.+..+|.+.|++++|.+.|++..+.... +...+..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999888753 36789999999999999999999999999987543 678899999999999999999
Q ss_pred HHHHHHHHH
Q 045498 165 DKLLVQMKE 173 (207)
Q Consensus 165 ~~~~~~m~~ 173 (207)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=4.2e-11 Score=75.35 Aligned_cols=127 Identities=14% Similarity=0.120 Sum_probs=110.5
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46778888999999999999999988765 336778888999999999999999999999887533 6778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..|++++|...++++.+.. +.+..++..+...+...|++++|.++++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999999998863 346788899999999999999999999875
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=1.5e-10 Score=81.88 Aligned_cols=167 Identities=6% Similarity=-0.062 Sum_probs=131.0
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE---LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIEV 112 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 112 (207)
.++..+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|++..+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888899999999999999998864 223 56778888899999999999999999887642 123566
Q ss_pred HHHHHHHHhc--------CCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHHH
Q 045498 113 YSLVIDGLCR--------VGRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKGMIMEADKL 167 (207)
Q Consensus 113 ~~~li~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~ 167 (207)
+..+..++.+ .|++++|...|++..+.... +.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 99999999999999887432 22333 4567888999999999999
Q ss_pred HHHHHHcCCCC--ChhhHHHHHHHHHhc----------CchhHHHHHHHhh
Q 045498 168 LVQMKEKGCFP--DSTSFNTVIQGFLVK----------NETDRASSFLKKN 206 (207)
Q Consensus 168 ~~~m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m 206 (207)
|+.+.+..... ....+..+..+|... |++++|...+++.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 99998763211 345778888888866 8899999998875
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=5.2e-10 Score=77.39 Aligned_cols=148 Identities=13% Similarity=-0.005 Sum_probs=122.4
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI 82 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 82 (207)
.|+..+......+...|++++|+ ....+++...+..+..++.+.|++++|+..|++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888889999999999998 33333677788889999999999999999999999875 44667899999
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VVTYNILI 152 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li 152 (207)
.++...|++++|...+++..+.... +. ..|..+-..+.+.|++++|.+.+++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999998876532 34 56788888899999999999999999886 454 56777888
Q ss_pred HHHHhcCCH
Q 045498 153 NGLCKKGMI 161 (207)
Q Consensus 153 ~~~~~~~~~ 161 (207)
..|...|+.
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777766
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.6e-10 Score=81.95 Aligned_cols=167 Identities=10% Similarity=-0.023 Sum_probs=132.4
Q ss_pred CccHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 37 CLDVFVYSSLINGLC-------TFNRL-------KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
+.++..|..+...+. +.|++ ++|..+|++..+.-.+-+...|..+...+...|++++|..+|++..
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 446677877777765 35886 8999999999884223455689999999999999999999999998
Q ss_pred hCCCCccHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 103 RDKYELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC-KKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 103 ~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
+.... +.. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|++++|..+|+...+.. +-+.
T Consensus 127 ~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 203 (308)
T 2ond_A 127 AIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 203 (308)
T ss_dssp TSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred hcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 85422 333 899999999999999999999999998753 24555554443322 3699999999999998762 3367
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 181 TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..|..++..+.+.|++++|..+|++.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999875
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=1.7e-10 Score=83.14 Aligned_cols=192 Identities=10% Similarity=-0.055 Sum_probs=141.1
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----------HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-ch
Q 045498 13 HVYGIRINGMCKIREIDSAI-----------KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-EL 75 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 75 (207)
..|......|...|++++|. ..+.+++ ..+|+.+..+|.+.|++++|+..|++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36777778888889988888 2233332 578999999999999999999999988653 2111 13
Q ss_pred hhHHHHHhhHhhh-cChhhHHHHHHHHHhCCCC----c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----
Q 045498 76 VTYNPLIHDNWEK-QGRFSAMALLQTLERDKYE----L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV---- 145 (207)
Q Consensus 76 ~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~---- 145 (207)
.+++.+-.++... |++++|...|++..+.... + ...++..+...+.+.|++++|...+++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 4788888889986 9999999999987654211 1 1356888899999999999999999999886543222
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH--hcCchhHHHHHHHhh
Q 045498 146 --VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS------TSFNTVIQGFL--VKNETDRASSFLKKN 206 (207)
Q Consensus 146 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~m 206 (207)
..|..+..++...|++++|...|++..+. .|+. ..+..+..++. ..+++++|.+.|+++
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 15677888899999999999999988754 2321 23455666664 457788998888764
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.3e-09 Score=84.76 Aligned_cols=192 Identities=9% Similarity=0.020 Sum_probs=146.5
Q ss_pred chhhhHHHHHhhhh-------hhhHH-------HHH---HcC---CCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498 11 NFHVYGIRINGMCK-------IREID-------SAI---KKG---ICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69 (207)
Q Consensus 11 ~~~~~~~ll~~~~~-------~g~~~-------~a~---~~~---~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 69 (207)
++..|..+...+.+ .|+++ +|. +.+ ..| +...|..+...+.+.|++++|..+|++..+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 34566666666664 57776 555 222 334 5788999999999999999999999999985
Q ss_pred CCCcc-h-hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH-HHhcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498 70 GITAE-L-VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID-GLCRVGRWEEARKKLDQLSEKGLVPGVV 146 (207)
Q Consensus 70 ~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 146 (207)
.|+ . ..|..+...+.+.|+.++|..+|++..+... .+...|..... .+...|+.++|..+|+...+... -+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHH
Confidence 443 2 4788888888999999999999999887632 23333332222 23468999999999999887643 2678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD--STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..+.+++
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999988632 232 347888888888899999999988765
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=2.1e-10 Score=78.56 Aligned_cols=130 Identities=8% Similarity=-0.017 Sum_probs=61.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
+..++.+.|++++|+..|++..+.. |-+...+..+-.++...|++++|...|++..+... -+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 5555555666666666666555543 33445555555555666666666666665555432 244455555555443332
Q ss_pred --HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 126 --WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 126 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
.+.+...++.... ..|....+...-.++...|++++|...|++..+. .|+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 2233333333321 1111222223333444455566666666655543 34443
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.4e-10 Score=86.55 Aligned_cols=192 Identities=10% Similarity=-0.002 Sum_probs=144.9
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-----------HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 045498 12 FHVYGIRINGMCKIREIDSAI-----------KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA- 73 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~- 73 (207)
..+|..+...|...|++++|. ..+ ......+++.+-..|...|++++|+..|++..+. +-.+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 467888889999999999988 111 1223467888999999999999999999988653 2111
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG 144 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~ 144 (207)
...++..+-.++...|++++|...+++..+. +. +....++..+...+.+.|++++|.+.+++..+. +-+..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1247888889999999999999999988762 23 335678889999999999999999999887654 11112
Q ss_pred hhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 145 VVTYNILINGLCKKGM---IMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...+..+...+...|+ +++|..+++.. +..| ....+..+...|...|++++|.+++++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345677788888898 66666666654 3333 3356778999999999999999999875
No 69
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=7.3e-11 Score=78.60 Aligned_cols=161 Identities=14% Similarity=-0.011 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-H
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-L 120 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~ 120 (207)
.+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+... +...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34556667778888888888888876653 34566778888888888888888888888765532 33332222111 1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 199 (207)
...++...|...+++..+.... +...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222233467778877776433 57788888888889999999999998888764322 345788888888889999888
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 70
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=3.6e-10 Score=81.24 Aligned_cols=170 Identities=13% Similarity=-0.019 Sum_probs=136.8
Q ss_pred HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498 33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 112 (207)
....+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++..... |+...
T Consensus 110 ~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 186 (287)
T 3qou_A 110 DXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRY 186 (287)
T ss_dssp HHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHH
T ss_pred HHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHH
Confidence 33345566777888888999999999999999998875 4566788899999999999999999999887664 34333
Q ss_pred H-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 045498 113 Y-SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGF 190 (207)
Q Consensus 113 ~-~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~ 190 (207)
. ......+.+.++.+.|.+.+++....... +...+..+...+...|++++|...|.++.+.... .+...+..+...+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2 23333466777888899999998887543 6888999999999999999999999999987422 1267899999999
Q ss_pred HhcCchhHHHHHHHhh
Q 045498 191 LVKNETDRASSFLKKN 206 (207)
Q Consensus 191 ~~~~~~~~a~~~~~~m 206 (207)
...|+.++|...+++.
T Consensus 266 ~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 266 AALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHH
Confidence 9999999999888764
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=6e-10 Score=80.23 Aligned_cols=165 Identities=12% Similarity=-0.052 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc-hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---Cc--cHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ----GITAE-LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---EL--NIE 111 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~ 111 (207)
.|......|...|++++|...|.+.... |-+++ ..+|+.+-.++...|++++|...+++..+... .+ ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556677888999999999999988653 32222 46889999999999999999999988765421 11 145
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----
Q 045498 112 VYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVP-G----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS----- 180 (207)
Q Consensus 112 ~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----- 180 (207)
+++.+...|... |++++|...+++..+..... + ..++..+...+.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788889999996 99999999999887642110 1 356888999999999999999999999886432222
Q ss_pred -hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 181 -TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 181 -~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.++..+..++...|++++|...+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 15677888999999999999999875
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=3.7e-10 Score=88.62 Aligned_cols=134 Identities=13% Similarity=0.021 Sum_probs=103.4
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 99 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH 99 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 46677788888888888888888888887764 4456677778888888888888888888877764 335677788888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK---GMIMEADKLLVQMKEKG 175 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~ 175 (207)
++.+.|++++|.+.+++..+.... +...+..+...+... |++++|...+++..+.+
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 888888888888888887776433 566777788888888 88888888888887763
No 73
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.6e-09 Score=73.88 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=110.2
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-c-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-c-HHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-A-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-N-IEVYS 114 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~-~~~~~ 114 (207)
++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|++..+..... . ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445555666777788888888888888765311 1 12456667777888888888888888877654321 1 12333
Q ss_pred HHHHHHh------------------cCCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcC
Q 045498 115 LVIDGLC------------------RVGRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKG 159 (207)
Q Consensus 115 ~li~~~~------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~ 159 (207)
.+..++. ..|++++|...|+++.+..+. +...+ ..+...|.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333 357788888888888876322 22222 23456778889
Q ss_pred CHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 160 MIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++++|...|+.+.+. .|+ ..++..+..++.+.|++++|.+.++.+
T Consensus 162 ~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999999999998876 233 256788888999999999999888754
No 74
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=1e-10 Score=87.84 Aligned_cols=194 Identities=12% Similarity=0.015 Sum_probs=143.7
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----------HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCcch
Q 045498 13 HVYGIRINGMCKIREIDSAI-----------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G-ITAEL 75 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----------~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~ 75 (207)
.+|..+...|...|++++|. ..+ ......++..+...+...|++++|...+++..+. + .+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 46788888888999999888 112 1334567888888999999999999999987653 1 12234
Q ss_pred hhHHHHHhhHhhhcC-----------------hhhHHHHHHHHHhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 76 VTYNPLIHDNWEKQG-----------------RFSAMALLQTLERD----KY-ELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
.++..+...+...|+ +++|...+++..+. +. ......+..+...+...|++++|.+.+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 577888888999999 88988888876442 11 123457778888899999999999999
Q ss_pred HHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 134 DQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGC--F---PDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 134 ~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~---p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
++..+.... ++ ...+..+...|...|++++|...+++..+... . ....++..+...+...|++++|.+++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887654111 11 23778888999999999999999988765411 0 12467888888999999999999988
Q ss_pred Hhh
Q 045498 204 KKN 206 (207)
Q Consensus 204 ~~m 206 (207)
++.
T Consensus 327 ~~a 329 (411)
T 4a1s_A 327 NRH 329 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=2.4e-10 Score=80.99 Aligned_cols=164 Identities=10% Similarity=-0.060 Sum_probs=130.5
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-------H-------cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-------K-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------G 70 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-------~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~ 70 (207)
...++..+...|...|++++|+ . ...+....++..+...+...|++++|...|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4567888999999999999998 1 112335678999999999999999999999998754 1
Q ss_pred -CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC------C-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 045498 71 -ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------K-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--- 139 (207)
Q Consensus 71 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 139 (207)
.+....++..+...+...|++++|...+++..+. + .+....++..+...+.+.|++++|.+.+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334567888999999999999999999998765 1 1224568888999999999999999999887753
Q ss_pred ---------------------------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 140 ---------------------------------------------GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 140 ---------------------------------------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.......++..+...|...|++++|..++++..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122446788899999999999999999987653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=6.7e-10 Score=82.76 Aligned_cols=191 Identities=9% Similarity=0.024 Sum_probs=143.6
Q ss_pred hhhhHHHHHhhhhhhhHHHHH----------Hc-CC-Cc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 045498 12 FHVYGIRINGMCKIREIDSAI----------KK-GI-CL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA- 73 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~----------~~-~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~- 73 (207)
..++..+...|...|+++.|. .. +. .+ ...+++.+-..|...|++++|...|++..+. +.++
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 457788888999999999888 11 11 22 3567888999999999999999999988653 2111
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHh-----CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC----CCC
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLER-----DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL----VPG 144 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~----~~~ 144 (207)
...++..+-.++...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 234678888899999999999999998876 33 33477888999999999999999999998876522 222
Q ss_pred hhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 145 VVTYNILINGLCKKGM---IMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 145 ~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
...+..+-..+...++ +.+|...++. .+..| ....+..+...|...|++++|.+++++.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666677777788 6666666665 33323 3356778899999999999999999875
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=2.2e-09 Score=83.57 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=131.6
Q ss_pred ccHHhHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHh
Q 045498 38 LDVFVYSSLINGLCT-------FNRLK-------EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 103 (207)
.++..|......+.+ .|+++ +|..+|++..+.-.+.+...|..+...+.+.|++++|..+|++..+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 456778888887775 68887 8999999998632355678899999999999999999999999988
Q ss_pred CCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 104 DKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 104 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
.... + ...|......+.+.|++++|.++|++..+.... +...|...... +...|++++|..+|+...+.. +.+..
T Consensus 350 ~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~ 426 (530)
T 2ooe_A 350 IEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 426 (530)
T ss_dssp SSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred cccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence 6422 3 358889999999999999999999999886322 33333332222 336899999999999988762 33678
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 182 SFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|..++..+.+.|+.++|..+|++.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 8999999999999999999999875
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.4e-10 Score=86.59 Aligned_cols=195 Identities=14% Similarity=0.041 Sum_probs=140.6
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-----------HcCC-CccHHhHHHHHHHHHhcCC--------------------hhHH
Q 045498 12 FHVYGIRINGMCKIREIDSAI-----------KKGI-CLDVFVYSSLINGLCTFNR--------------------LKEA 59 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a 59 (207)
..++..+...|...|++++|. ..+. .....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 446777778888888888888 1111 1124578888888888899 8999
Q ss_pred HHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhcCCCHHHH
Q 045498 60 VELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDK----YE-LNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 60 ~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~~~~a 129 (207)
...+++..+. +..| ...++..+...+...|++++|...+++..+.. .. ....++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888876542 2112 23467778888889999999999988875431 11 1234778888889999999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchhHH
Q 045498 130 RKKLDQLSEKG----LVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD----STSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 130 ~~~~~~~~~~g----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 199 (207)
...+++..+.. ..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998776431 111 145778888899999999999999988765311 111 45788888899999999999
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
.+++++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=2.6e-09 Score=75.47 Aligned_cols=185 Identities=11% Similarity=-0.077 Sum_probs=135.3
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-c---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-D---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYN 79 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~ 79 (207)
+...+-.....+.+.|++++|+ -....| + ...+..+..++.+.|++++|+..|++..+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4456677778888999999999 112223 3 67788899999999999999999999988631 12245666
Q ss_pred HHHhhHhh--------hcChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcCCCHHHHHHHHH
Q 045498 80 PLIHDNWE--------KQGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 80 ~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~ 134 (207)
.+..++.. .|++++|...|++..+.... +.... ..+...|.+.|++++|...|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77778888 99999999999998876432 22222 556788999999999999999
Q ss_pred HHHhCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchhH
Q 045498 135 QLSEKGLVP--GVVTYNILINGLCKK----------GMIMEADKLLVQMKEKGCFPDS----TSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 135 ~~~~~g~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~ 198 (207)
...+..... ....+..+..+|... |++++|...|+.+.+. .|+. .+...+-..+.+.+++++
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 998864321 245677788888766 8999999999999886 3443 344444445555554443
No 80
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=4.2e-10 Score=84.40 Aligned_cols=196 Identities=13% Similarity=0.013 Sum_probs=149.4
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-----------HcC-CCccHHhHHHHHHHHHhcCC-----------------hhHHHH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-----------KKG-ICLDVFVYSSLINGLCTFNR-----------------LKEAVE 61 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-----------~~~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~ 61 (207)
...++..+...|...|++++|. ..+ ......++..+...+...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3457788888999999999988 122 22235678888999999999 999999
Q ss_pred HHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcCCCHHHHHH
Q 045498 62 LFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----LNIEVYSLVIDGLCRVGRWEEARK 131 (207)
Q Consensus 62 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~ 131 (207)
.+++..+. +..+ ...++..+...+...|++++|...+++..+.... .....+..+...|...|++++|.+
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887542 2112 2347788888999999999999999987654211 113478888999999999999999
Q ss_pred HHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCChhhHHHHHHHHHhcCchhHHHH
Q 045498 132 KLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKG----C-FPDSTSFNTVIQGFLVKNETDRASS 201 (207)
Q Consensus 132 ~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~ 201 (207)
.+++..+.... ....++..+...+...|++++|...+++..+.. . .....++..+...|...|++++|.+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99887654211 124678888999999999999999999887541 1 1123578889999999999999999
Q ss_pred HHHhh
Q 045498 202 FLKKN 206 (207)
Q Consensus 202 ~~~~m 206 (207)
++++.
T Consensus 365 ~~~~a 369 (411)
T 4a1s_A 365 YAEQH 369 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=2.9e-09 Score=76.62 Aligned_cols=164 Identities=11% Similarity=0.004 Sum_probs=119.2
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-----cH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-----NI 110 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~ 110 (207)
.++..++..+..++...|++++|++++.+-...+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 45566666888889999999999999998876653 235677888889999999999999999999875 44 35
Q ss_pred HHHHHHHHH--Hhc--CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C----CC
Q 045498 111 EVYSLVIDG--LCR--VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G----CF 177 (207)
Q Consensus 111 ~~~~~li~~--~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~----~~ 177 (207)
.+...+..+ ... .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+. . -+
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 555556555 232 33899999999998776 345444455555888999999999999876653 1 13
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 178 PDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 178 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
-|+.++..+|......|+ +|.++++++
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 366677667666666675 667776654
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=2.2e-10 Score=74.34 Aligned_cols=144 Identities=8% Similarity=-0.120 Sum_probs=100.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (207)
..+...|++++|+..++...... +-+...+-.+-..|...|++++|...|++..+... -+...|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34455677888888887775542 22344556677788888888888888888777653 36778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL-LVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+|...|++..+.... +...+..+...|.+.|+++++.+. ++...+.. +-++.+|....+.+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888876543 567788888888888888765554 46666652 2355666666666666554
No 83
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=2.1e-10 Score=83.17 Aligned_cols=195 Identities=14% Similarity=0.025 Sum_probs=136.9
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-----------HcCCC-ccHHhHHHHHHHHHhcCC--------------------hhHH
Q 045498 12 FHVYGIRINGMCKIREIDSAI-----------KKGIC-LDVFVYSSLINGLCTFNR--------------------LKEA 59 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~ll~~~~~~~~--------------------~~~a 59 (207)
..++..+...+...|++++|. ..+.. ....++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 456677777888888888877 11111 123477778888888888 8888
Q ss_pred HHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-----CccHHHHHHHHHHHhcCCCHHHH
Q 045498 60 VELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-----ELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 60 ~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~~~~a 129 (207)
...+++.... +..+ ...++..+...+...|++++|...+++..+... .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776432 2111 234677777888888999999988888654311 11234777888888899999999
Q ss_pred HHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCchhHH
Q 045498 130 RKKLDQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEK----GCF-PDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 130 ~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a 199 (207)
.+.+++..+.... .+ ..++..+...+...|++++|...+++..+. +-. ....++..+...+.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988877643111 11 456778888889999999999999887653 111 1234677888899999999999
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
.+++++.
T Consensus 323 ~~~~~~a 329 (338)
T 3ro2_A 323 MHFAEKH 329 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 84
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=2.8e-10 Score=82.49 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=146.9
Q ss_pred hhhhHHHHHhhhhhhhHHHHH-----------HcCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-c
Q 045498 12 FHVYGIRINGMCKIREIDSAI-----------KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-E 74 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 74 (207)
..++..+...+...|++++|. ..+.. ....++..+...+...|++++|...+++..+. +-++ .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 357888889999999999988 12222 23667888999999999999999999987653 1111 1
Q ss_pred hhhHHHHHhhHhhhcC--------------------hhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHH
Q 045498 75 LVTYNPLIHDNWEKQG--------------------RFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a 129 (207)
..++..+...+...|+ +++|...+++..+. +.. .....+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3377888889999999 99999888876432 211 2245778888999999999999
Q ss_pred HHHHHHHHhCCC----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchhHH
Q 045498 130 RKKLDQLSEKGL----V-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD----STSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 130 ~~~~~~~~~~g~----~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 199 (207)
.+.+++..+... . ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 999988765311 1 1133788888999999999999999998765311 111 46788889999999999999
Q ss_pred HHHHHhh
Q 045498 200 SSFLKKN 206 (207)
Q Consensus 200 ~~~~~~m 206 (207)
.+++++.
T Consensus 283 ~~~~~~a 289 (338)
T 3ro2_A 283 IDYHLKH 289 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.19 E-value=4.3e-10 Score=83.92 Aligned_cols=194 Identities=13% Similarity=0.038 Sum_probs=147.2
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-cch
Q 045498 13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT-AEL 75 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~ 75 (207)
.++..+...+...|++++|. ..+..| ...++..+...+...|++++|...+++..+. +-+ ...
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 57888889999999999988 122222 3567888899999999999999999988653 111 113
Q ss_pred hhHHHHHhhHhhhcC--------------------hhhHHHHHHHHHhC----CCCc-cHHHHHHHHHHHhcCCCHHHHH
Q 045498 76 VTYNPLIHDNWEKQG--------------------RFSAMALLQTLERD----KYEL-NIEVYSLVIDGLCRVGRWEEAR 130 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~ 130 (207)
.++..+...+...|+ +++|...+++..+. +..| ...++..+...+...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 478888889999999 99999988876433 2122 2457888889999999999999
Q ss_pred HHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-ChhhHHHHHHHHHhcCchhHHH
Q 045498 131 KKLDQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEKG----CFP-DSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 131 ~~~~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
+.+++..+.... ++ ..++..+...|...|++++|...+++..+.. ..+ ...++..+...+...|++++|.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999887654111 11 3378888999999999999999999887531 111 1467888999999999999999
Q ss_pred HHHHhh
Q 045498 201 SFLKKN 206 (207)
Q Consensus 201 ~~~~~m 206 (207)
+++++.
T Consensus 288 ~~~~~a 293 (406)
T 3sf4_A 288 DYHLKH 293 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=7.3e-10 Score=88.81 Aligned_cols=177 Identities=10% Similarity=-0.056 Sum_probs=129.6
Q ss_pred hhhhhHHHHH---H-----------cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 23 CKIREIDSAI---K-----------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 23 ~~~g~~~~a~---~-----------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
...|++++|+ + ...+.+...+..+..++.+.|++++|+..|++..+.+ +.+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 5677777776 1 2224456778888888888899999999888888764 44567788888888888
Q ss_pred cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
|++++|...|++..+.... +...+..+..++.+.|++++ .+.|++..+.... +...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988888776532 56777888888888888888 8888888876543 5678888888888899999998888
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHHhcC--------chhHHHHHHHh
Q 045498 169 VQMKEKGCFPD-STSFNTVIQGFLVKN--------ETDRASSFLKK 205 (207)
Q Consensus 169 ~~m~~~~~~p~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 205 (207)
++..+. .|+ ..++..+..++...+ ++++|.+.+..
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 877664 343 456666777765533 35566655543
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1e-09 Score=88.01 Aligned_cols=152 Identities=8% Similarity=-0.066 Sum_probs=131.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498 51 CTFNRLKEAVELFDKMV--------AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122 (207)
Q Consensus 51 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 122 (207)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...+++..+.. +-+...+..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 4466788888899999999999999999998875 3367889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ ...|++..+.+ +-+...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987543 67889999999999999999 99999998863 33678899999999999999999999
Q ss_pred HHhhC
Q 045498 203 LKKNM 207 (207)
Q Consensus 203 ~~~m~ 207 (207)
+++.+
T Consensus 557 ~~~al 561 (681)
T 2pzi_A 557 LDEVP 561 (681)
T ss_dssp HHTSC
T ss_pred HHhhc
Confidence 98753
No 88
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.16 E-value=5.7e-09 Score=75.08 Aligned_cols=197 Identities=10% Similarity=-0.034 Sum_probs=137.3
Q ss_pred cccchhhhHHHHHhhhhhhhHHHHHHcCCCccHHh---HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcch----hhHH
Q 045498 8 FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFV---YSSLINGLCTFNRLKEAVELFDKMVAQG-ITAEL----VTYN 79 (207)
Q Consensus 8 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~ 79 (207)
..|+..+...+...+.-. ++.........+... +...+..+...|++++|...+++..+.. ..|+. ..+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 119 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY 119 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--THHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHH
Confidence 356666666665554321 222222222222333 3344677889999999999999988743 22332 1333
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCC-cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHh----C-CCCCC-hhhH
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYE-LN----IEVYSLVIDGLCRVGRWEEARKKLDQLSE----K-GLVPG-VVTY 148 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-g~~~~-~~~~ 148 (207)
.+...+...+++++|...+++..+.... ++ ..+++.+...|...|++++|...+++..+ . +..+. ..++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 4666677778999999999998874322 22 34789999999999999999999998874 1 11222 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCc-hhHHHHHHHhh
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEK----GCFPD-STSFNTVIQGFLVKNE-TDRASSFLKKN 206 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~m 206 (207)
..+...|.+.|++++|...+++..+. +..+. ..+|..+..++.+.|+ +++|.+.+++.
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 89999999999999999999987653 22222 5788999999999994 69999998875
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=5.3e-09 Score=77.96 Aligned_cols=188 Identities=12% Similarity=-0.022 Sum_probs=139.8
Q ss_pred HHHhhhhhhhHHHHH---H--------cCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CC----CcchhhHH
Q 045498 18 RINGMCKIREIDSAI---K--------KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GI----TAELVTYN 79 (207)
Q Consensus 18 ll~~~~~~g~~~~a~---~--------~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~----~~~~~~~~ 79 (207)
....+...|++++|. . .+..+ ...++..+...+...|++++|+..+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344566789999988 1 11122 3577889999999999999999999988653 11 11235778
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-CCChhhHH
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDK----YE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GL-VPGVVTYN 149 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~ 149 (207)
.+-.++...|++++|...+++..+.. .. ....++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88899999999999999998876441 11 12357888999999999999999999988762 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCc---hhHHHHHHHh
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEK----GCFPDSTSFNTVIQGFLVKNE---TDRASSFLKK 205 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 205 (207)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999987654 112222345677788888888 7888887765
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=1.2e-08 Score=69.54 Aligned_cols=88 Identities=9% Similarity=-0.143 Sum_probs=39.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
+...+...|++++|+..|++.. .|+..++..+..++...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444444444444444331 2334444444444444444444444444444332 1233444444444444555
Q ss_pred HHHHHHHHHHHHh
Q 045498 126 WEEARKKLDQLSE 138 (207)
Q Consensus 126 ~~~a~~~~~~~~~ 138 (207)
+++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444444
No 91
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-08 Score=77.84 Aligned_cols=194 Identities=15% Similarity=0.003 Sum_probs=136.8
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH---------------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI---------------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G 70 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~---------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~ 70 (207)
.....||.+...+...|+.++|+ ....+....+|+.+..+|...|++++|...+++..+. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 33567999999999999999998 1122334678999999999999999999999987642 1
Q ss_pred --CC-cchhhHHHHHhhHhh--hcChhhHHHHHHHHHhCCCCccHHHHHHHHHH---HhcCCCHHHHHHHHHHHHhCCCC
Q 045498 71 --IT-AELVTYNPLIHDNWE--KQGRFSAMALLQTLERDKYELNIEVYSLVIDG---LCRVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 71 --~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~g~~ 142 (207)
.. ....++..+-.++.. .+++++|...|++..+.... +...+..+..+ +...++.++|.+.+++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 01 123455555555544 35789999999998876532 44445444433 45667788899999888876433
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 143 PGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 143 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...+..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|.+.+++.
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 45556555555544 467788999999887763 446678889999999999999999998864
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=3.6e-08 Score=67.53 Aligned_cols=160 Identities=12% Similarity=-0.062 Sum_probs=128.8
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----ChhhHHHHHHHHHhCCCCccHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----GRFSAMALLQTLERDKYELNIEVY 113 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~ 113 (207)
-++..+..+-..|...+++++|+..|++..+.| +...+..|-..|.. + +.++|...|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 366778888888889999999999999998876 45566667767776 6 8999999999988766 55677
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498 114 SLVIDGLCR----VGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 114 ~~li~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (207)
..+-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|...|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 777778877 88999999999999988632 126788888888888 88999999999999876 33556778
Q ss_pred HHHHHHHhc-C-----chhHHHHHHHhh
Q 045498 185 TVIQGFLVK-N-----ETDRASSFLKKN 206 (207)
Q Consensus 185 ~l~~~~~~~-~-----~~~~a~~~~~~m 206 (207)
.|...|... | +.++|.+++++.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 888888654 3 899999998864
No 93
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.13 E-value=1e-08 Score=73.68 Aligned_cols=167 Identities=10% Similarity=-0.037 Sum_probs=124.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch-----hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---Ccc--
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL-----VTYNPLIHDNWEKQGRFSAMALLQTLERDKY---ELN-- 109 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 109 (207)
...+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556778888999999999999988775322111 2233455566778899999999998775421 112
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh---C-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-
Q 045498 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE---K-GLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEKG----CFP- 178 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p- 178 (207)
..+++.+...|...|++++|...+++..+ . +-.+ ...++..+...|.+.|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45889999999999999999999998762 2 1111 12588899999999999999999999876531 111
Q ss_pred ChhhHHHHHHHHHhcCchhHH-HHHHHhh
Q 045498 179 DSTSFNTVIQGFLVKNETDRA-SSFLKKN 206 (207)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~m 206 (207)
-..+|..+..+|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 156788899999999999999 7767653
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.12 E-value=1.5e-09 Score=70.31 Aligned_cols=140 Identities=7% Similarity=-0.118 Sum_probs=108.2
Q ss_pred HHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh
Q 045498 18 RINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 18 ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 91 (207)
|-..+...|++++|+ .....| ++..+-.+-..|.+.|++++|++.|++..+.. +-+..+|..+-.++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445667789999988 222333 34556778899999999999999999998875 55778999999999999999
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK-LDQLSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
++|...|++..+... -+...+..+...|.+.|++++|.+. +++..+..+. +...|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 999999999988753 3678899999999999999876665 5887776433 56677777777666664
No 95
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.10 E-value=1e-08 Score=86.17 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=121.1
Q ss_pred hhhhHHHHHhhhhhhhHHHHHHcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498 12 FHVYGIRINGMCKIREIDSAIKKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90 (207)
Q Consensus 12 ~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 90 (207)
+.+|..+..++...|++++|+..=. .-|...|..++.+|.+.|++++|.+.+...++.. +++...+.+..+|++.++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 5677788888888888888882211 2456677778888888888888888887766543 333344457777777777
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
+++..... + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.++.
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 76533332 1 345556667777778888888888888763 3777788888888888887777765
Q ss_pred HHHc------------------------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 171 MKEK------------------------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 171 m~~~------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.... ++..++..+..++..|.+.|.+++|..+++..
T Consensus 1247 A~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1247 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred hCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4221 12224555667888888888888888888654
No 96
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.10 E-value=1.2e-07 Score=73.01 Aligned_cols=155 Identities=16% Similarity=0.059 Sum_probs=93.3
Q ss_pred HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccH
Q 045498 40 VFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNI 110 (207)
Q Consensus 40 ~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~ 110 (207)
+..+..+-..+.. .+++++|+..|++..+.| +...+..+-..+... ++.++|...+++..+.+ +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 3344444444544 556666666666655543 223444444444444 56666666666666554 23
Q ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhH
Q 045498 111 EVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSF 183 (207)
Q Consensus 111 ~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 183 (207)
..+..+-..|.+.| ++++|.+.+++..+.| +...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 34555555555444 5667777777766653 55666677777766 677777777777777654 45666
Q ss_pred HHHHHHHHh----cCchhHHHHHHHhh
Q 045498 184 NTVIQGFLV----KNETDRASSFLKKN 206 (207)
Q Consensus 184 ~~l~~~~~~----~~~~~~a~~~~~~m 206 (207)
..|...|.+ .++.++|.++|++.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 667777766 67777777777653
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=9.6e-09 Score=80.62 Aligned_cols=148 Identities=11% Similarity=-0.075 Sum_probs=59.6
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
|++++|++.|++..+.. +.+...+..+-..+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444444332 2233444444444445555555555555444432 113444444444555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CchhHHHHHHHh
Q 045498 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK---NETDRASSFLKK 205 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~ 205 (207)
++..+.... +...+..+..++.+.|++++|...+++..+.. +.+..++..+..++... |+.++|.+.+++
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 544443221 33444444455555555555555555444431 12334444444444444 455555444443
No 98
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.10 E-value=1.2e-07 Score=72.99 Aligned_cols=182 Identities=10% Similarity=-0.005 Sum_probs=97.8
Q ss_pred hhhhHHHHHhhhh----hhhHHHHH----HcCCCccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498 12 FHVYGIRINGMCK----IREIDSAI----KKGICLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYN 79 (207)
Q Consensus 12 ~~~~~~ll~~~~~----~g~~~~a~----~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 79 (207)
+..+..+-..|.. .+++++|. ...-.-++..+..|-..|.. .+++++|...|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444444444544 55666555 00001244555566666666 666667777666666654 334444
Q ss_pred HHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 80 PLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 80 ~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.|-..|.. .+++++|...|++..+.| +...+..+-..|.. .+++++|.+.|++..+.| +...+..+
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~L 189 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQL 189 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45555555 556666666666665554 33444555555544 556666666666665543 44555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498 152 INGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK 205 (207)
Q Consensus 152 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 205 (207)
...|.+ .+++++|...|+...+.| +..++..+...|.. .+++++|.+++++
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555555 556666666666555542 33444445555543 4555555555543
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=1.8e-08 Score=72.53 Aligned_cols=142 Identities=9% Similarity=0.011 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498 59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 59 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 137 (207)
++..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777655 45666667888999999999999999999877654 2367788889999999999999999999998
Q ss_pred hCCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 138 EKGLVP-----GVVTYNILINGL--CKKG--MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 138 ~~g~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+. .| +..+...|..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 45 356666676663 3334 899999999998765 45533344455589999999999999875
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=1e-08 Score=70.07 Aligned_cols=162 Identities=10% Similarity=-0.011 Sum_probs=122.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH----------------HHhhHhhhcChhhHHHHHHHHHhC
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP----------------LIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
..+-.....+.+.|++++|+..|++..+.. +-+...|.. +-.++...|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344445566778999999999999998764 334455666 888999999999999999999887
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhh
Q 045498 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTS 182 (207)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 182 (207)
.. -+...+..+..++...|++++|...|++..+..+. +..++..+...|...|+ ...+...++.... ..|....
T Consensus 84 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 53 37889999999999999999999999999988544 67788888888876654 3455555555432 2233334
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 183 FNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
+.....++...|++++|...|++.+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5556667778899999999998764
No 101
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.08 E-value=2e-08 Score=65.52 Aligned_cols=131 Identities=8% Similarity=-0.007 Sum_probs=96.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556777778888889999998888887764 4456777778888888888888888888877764 3356778888888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYN--ILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+.+.|++++|.+.+++..+.... +...+. .....+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888776432 344443 333446677888888888876543
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=5.2e-08 Score=72.21 Aligned_cols=193 Identities=13% Similarity=0.027 Sum_probs=137.7
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCCC--c-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--c--ch
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGIC--L-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT--A--EL 75 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~ 75 (207)
++..+...+...|++++|. ..+.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777788899999887 22322 3 3456777888899999999999999998754221 1 23
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHH----HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hh
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYS----LVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VV 146 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~ 146 (207)
.++..+...+...|++++|...+++.......++ ..... .....+...|++++|...++........++ ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788889999999999999998765421111 11111 233457799999999999998876533211 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK----GCFPDS-TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+..+...+...|++++|...++..... |..++. .++..+..++...|+.++|...+++.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4667788999999999999999987643 222233 36777788899999999999988764
No 103
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=1.8e-08 Score=62.22 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233344444444444444444444444444332 12333444444444
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 045498 121 CRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~ 138 (207)
.+.|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=7.3e-09 Score=68.83 Aligned_cols=157 Identities=13% Similarity=-0.030 Sum_probs=119.2
Q ss_pred hhHHHHHhhhhhhhHHHHH---HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh-Hh
Q 045498 14 VYGIRINGMCKIREIDSAI---KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-NW 86 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~---~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~ 86 (207)
.+......+.+.|++++|. +..+ +.+...+..+...+.+.|++++|+..|++..... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4556677888999999998 3333 3356788999999999999999999999987653 344333332212 12
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~ 165 (207)
..+...++...+++..+.. +-+...+..+..++...|++++|...+++..+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2234445788888887764 2367889999999999999999999999999875443 3568899999999999999999
Q ss_pred HHHHHHHH
Q 045498 166 KLLVQMKE 173 (207)
Q Consensus 166 ~~~~~m~~ 173 (207)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.06 E-value=4.7e-08 Score=66.58 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=108.6
Q ss_pred hhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498 14 VYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG 90 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 90 (207)
.+..+...+...|++++|. ...+.|+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 4556677888999999999 66678899999999999999999999999999998775 4567789999999999999
Q ss_pred hhhHHHHHHHHHhCCCC--------------c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498 91 RFSAMALLQTLERDKYE--------------L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 141 (207)
+++|...+++..+.... | ....+..+..++.+.|++++|.+.++...+...
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999998875321 1 237888899999999999999999999998743
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=7.1e-09 Score=75.14 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=91.4
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-chh
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-ELV 76 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 76 (207)
.|+.....|...|++++|. ..+..+ -..+|+.+...|.+.|++++|+..|++..+. |-+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5556666666667777666 222111 1345666677777777777777777765432 2111 124
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCC----c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hh
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYE----L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VV 146 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~ 146 (207)
++..+-.+|.. |++++|...+++..+.... + ...++..+...|.+.|++++|.+.+++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 55566666666 7777777777765443111 0 1345666677777777777777777766543 11111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.+..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555566666677777777777766
No 107
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=2.1e-08 Score=74.71 Aligned_cols=185 Identities=9% Similarity=-0.050 Sum_probs=136.2
Q ss_pred HhhhhhhhHHHHH---H------c--CCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCc-chhhHHHH
Q 045498 20 NGMCKIREIDSAI---K------K--GIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G-ITA-ELVTYNPL 81 (207)
Q Consensus 20 ~~~~~~g~~~~a~---~------~--~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~-~~~~~~~l 81 (207)
..+...|++++|+ . . +-. ....++..+...|...|+++.|...+++..+. + ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3445778888888 1 1 111 13567888999999999999999999987642 1 111 24577888
Q ss_pred HhhHhhhcChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHHHH
Q 045498 82 IHDNWEKQGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYNIL 151 (207)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 151 (207)
-.++...|++++|...+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .... ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 88999999999999999887653 211 1245788888999999999999999998876 4322 36778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCc---hhHHHHHHHh
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGC----FPDSTSFNTVIQGFLVKNE---TDRASSFLKK 205 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 205 (207)
...+.+.|++++|...+++..+... +.....+..+...+...++ +++|..++++
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999886522 1223445666666777777 7778777664
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.05 E-value=5.4e-09 Score=70.64 Aligned_cols=154 Identities=12% Similarity=-0.090 Sum_probs=82.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCH
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~ 126 (207)
..|++++|.+.++.+... ......++..+-..+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444321 1223455666666666667777666666665431 111 1234555666666667777
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhcCc
Q 045498 127 EEARKKLDQLSEK----GLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEKG---CFPD--STSFNTVIQGFLVKNE 195 (207)
Q Consensus 127 ~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~ 195 (207)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7776666655432 1111 13345566666666677777777666654321 0111 1234556666666777
Q ss_pred hhHHHHHHHhh
Q 045498 196 TDRASSFLKKN 206 (207)
Q Consensus 196 ~~~a~~~~~~m 206 (207)
+++|.+.+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666553
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=3.3e-08 Score=64.45 Aligned_cols=127 Identities=10% Similarity=-0.059 Sum_probs=104.5
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456777788899999999999999988765 336788999999999999999999999999887533 677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCchhHHHHHHHh
Q 045498 156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNT--VIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 205 (207)
...|++++|...|++..+.. +.+...+.. ....+...|++++|.+.+++
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999998763 224445533 44447788999999998875
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.04 E-value=5.8e-09 Score=69.21 Aligned_cols=135 Identities=7% Similarity=0.044 Sum_probs=100.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-HhcCCCH--H
Q 045498 51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-LCRVGRW--E 127 (207)
Q Consensus 51 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~ 127 (207)
...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678889999998887764 45667888888899999999999999998877652 366777777777 7788998 9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
+|...++...+.... +...+..+...+...|++++|...|+...+. .|+......++...
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 999999998887533 5678888889999999999999999998876 34433333444433
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=6.8e-08 Score=66.72 Aligned_cols=163 Identities=13% Similarity=-0.006 Sum_probs=118.1
Q ss_pred chhhhHHHHHhhhhhhhHHHHH-------HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhH
Q 045498 11 NFHVYGIRINGMCKIREIDSAI-------KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTY 78 (207)
Q Consensus 11 ~~~~~~~ll~~~~~~g~~~~a~-------~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~ 78 (207)
+...+-.+...+.+.|++++|+ ... .+.....+..+..++.+.|++++|+..|++..+.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 3445566677888999999998 211 1112467888899999999999999999999876421 22 133
Q ss_pred HHHHhhHhh------------------hcChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcC
Q 045498 79 NPLIHDNWE------------------KQGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRV 123 (207)
Q Consensus 79 ~~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~ 123 (207)
..+-.++.. .|+.++|...|+++.+.... +.... ..+...|.+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334433 57899999999999876422 22121 2445678899
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 124 GRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 124 ~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
|++++|...|+.+.+...... ...+..+..++.+.|++++|...++.+...+
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999999999988733211 2568889999999999999999999988763
No 112
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=4e-08 Score=72.84 Aligned_cols=193 Identities=11% Similarity=0.017 Sum_probs=136.8
Q ss_pred hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--c-c
Q 045498 14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT--A-E 74 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~ 74 (207)
+++.+...+...|++++|. ..+... ...++..+...+...|++++|...+++..+. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 4566677788899999887 222111 1234667778889999999999999988643 222 2 2
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh-hhHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY----ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV-VTYN 149 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~ 149 (207)
..++..+-..+...|++++|...+++...... ......+..+...+...|++++|...+++.......++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 34566677888999999999999998765432 113457778888999999999999999988654222211 1222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 150 -----ILINGLCKKGMIMEADKLLVQMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 150 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23345779999999999998876543211 1234677888999999999999988764
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=2.8e-08 Score=62.25 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=44.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+...+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34444555555555555555555555554432 2233344444444444444444444444444332 113334444444
Q ss_pred HHhcCCCHHHHHHHHHHHHh
Q 045498 119 GLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~ 138 (207)
++.+.|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=4.4e-08 Score=60.46 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=94.9
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4677888889999999999999999988764 34677889999999999999999999999988753 367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 193 (207)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998763 23455566565555443
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=2.9e-08 Score=75.80 Aligned_cols=169 Identities=14% Similarity=-0.017 Sum_probs=105.2
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh-------------------cChhhHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK-------------------QGRFSAMAL 97 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------------~~~~~a~~~ 97 (207)
+.+..++..+...+.+.|++++|+..+++..+.. |-+..++..+-.++... +..+.|...
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456667778888888888888888888877653 33444555554443321 234556666
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHc
Q 045498 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV--TYNILIN-GLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+++..+.. +.+...+..+...+.+.|++++|.+.|++..+....+... .+..+.. .....|++++|...|++..+.
T Consensus 323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66665543 2244567778888899999999999999988875443221 1222222 234678889998888776543
Q ss_pred C-----------------------CCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 175 G-----------------------CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 175 ~-----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
. -+.+..+|..+...|...|++++|.+.|++.+
T Consensus 402 ~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 402 NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 13356788899999999999999999988753
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=2e-08 Score=62.55 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=59.0
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 44444444455555555555555544432 123445555555555555555555555555544221 3445555555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666555542 1244455555555555544
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=3.6e-08 Score=61.37 Aligned_cols=121 Identities=12% Similarity=-0.054 Sum_probs=101.6
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 356778888899999999999999999998764 4567788889999999999999999999988764 33677888999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI 161 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 161 (207)
..+.+.|++++|.+.+++..+.... +...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999887533 567777777887777654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=3.2e-08 Score=71.65 Aligned_cols=174 Identities=10% Similarity=-0.054 Sum_probs=129.7
Q ss_pred hhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHH
Q 045498 25 IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 25 ~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
.++++.|. ..|+.....|...|++++|...|.+..+. +-++ -..+|+.+...|...|++++|...++
T Consensus 29 ~~~~~~A~--------~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 100 (307)
T 2ifu_A 29 KPDYDSAA--------SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100 (307)
T ss_dssp SCCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CCCHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45666665 23556677888999999999999987542 2211 13578888899999999999999998
Q ss_pred HHHhC----CCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498 100 TLERD----KYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNILINGLCKKGMIMEADKLLV 169 (207)
Q Consensus 100 ~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~ 169 (207)
+..+. |-.. ...++..+...|.+ |++++|.+.+++..+..... ...++..+...|.+.|++++|...|+
T Consensus 101 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 179 (307)
T 2ifu_A 101 KASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ 179 (307)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86543 2111 24678888889988 99999999999876541110 14678899999999999999999999
Q ss_pred HHHHc----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 170 QMKEK----GCFPD-STSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 170 ~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
+..+. +..++ ..++..+..++...|++++|...+++.+
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 98763 22122 2367777788888899999999998753
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=3.2e-08 Score=71.05 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=126.2
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH-----H-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH-HH
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI-----K-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP-LI 82 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~-----~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll 82 (207)
.+...+..+...+...|++++|. . ..-+-+...+..+...+.+.|++++|...+++..... |+...... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455667777888899999998 1 2223367789999999999999999999999987663 44433222 23
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCH
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMI 161 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~ 161 (207)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888999999988775 3478899999999999999999999999999875432 267899999999999999
Q ss_pred HHHHHHHHHHHH
Q 045498 162 MEADKLLVQMKE 173 (207)
Q Consensus 162 ~~a~~~~~~m~~ 173 (207)
++|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998887543
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=6.2e-08 Score=60.61 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=98.9
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4456778888899999999999999999988765 336788999999999999999999999999887533 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
..++.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988763 224456666766666554
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=5.1e-08 Score=61.13 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=44.6
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 157 (207)
+...-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3333444444444444444444444332 123444444445555555555555555554444322 34445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 045498 158 KGMIMEADKLLVQMKEK 174 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~ 174 (207)
.|++++|...|+...+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555554443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=3.5e-08 Score=63.92 Aligned_cols=103 Identities=9% Similarity=-0.081 Sum_probs=84.4
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
...+..+-..+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3466777778888999999999999988775 336788888889999999999999999998887544 67788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 155 LCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
|.+.|++++|...|+...+. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999998876 35553
No 123
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.95 E-value=1.5e-07 Score=79.35 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=119.5
Q ss_pred hhhhHHHHHH--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498 24 KIREIDSAIK--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL 101 (207)
Q Consensus 24 ~~g~~~~a~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 101 (207)
..+++++|.+ ..+ -++.+|..+-.++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+.+...
T Consensus 1088 ~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666662 222 34677888889999999999999998553 35667888899999999999999999876
Q ss_pred HhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 102 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
.+.. ++....+.+..+|++.+++++...+. + .++...|..+...|...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 6654 23333345888889988888644442 2 346677778889999999999999999984 4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 182 SFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|..+..++++.|++++|.+.+++.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 7888999999999999999888753
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=6.5e-08 Score=71.05 Aligned_cols=129 Identities=3% Similarity=-0.201 Sum_probs=79.4
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--------------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL 141 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 141 (207)
..+..+-..+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455555566666666666666666555432211 35666667777777777777777777666543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH-HHHHHhh
Q 045498 142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA-SSFLKKN 206 (207)
Q Consensus 142 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m 206 (207)
. +...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.++| ...+++|
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 56666677777777777777777777766652 22455666666677777777666 3344443
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=5.5e-08 Score=63.03 Aligned_cols=123 Identities=11% Similarity=-0.090 Sum_probs=93.4
Q ss_pred hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
++..+.+.+...+.+++++. +.| +...+..+-..+.+.|++++|+..|++..... |.+...|..+-.++...|+++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA--IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHH
Confidence 34444554444444444432 233 45667778888889999999999999988775 556778888888999999999
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
+|...|++..+.... +...|..+..+|.+.|++++|.+.|++..+..
T Consensus 88 ~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 88 QAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999998877533 56788888889999999999999999888863
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=7e-08 Score=70.86 Aligned_cols=132 Identities=14% Similarity=-0.030 Sum_probs=111.7
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--------------hhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--------------LVTYNPLIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
+...+..+-..+.+.|++++|+..|++..+...... ..+|..+-.++.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999987642221 478889999999999999999999999887
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045498 105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK 172 (207)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 172 (207)
. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.+++ ...|+.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 347889999999999999999999999999987543 677888999999999999988 44666664
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=1.4e-07 Score=67.72 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=116.9
Q ss_pred HHHHHhhhhhhhHHHHH--------HcCCCccH----HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cc----hhhH
Q 045498 16 GIRINGMCKIREIDSAI--------KKGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AE----LVTY 78 (207)
Q Consensus 16 ~~ll~~~~~~g~~~~a~--------~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 78 (207)
...+..+...|++++|. .....|+. ..+..+...+...+++++|+..|++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33467788899999988 11222332 23445667777788999999999999874322 22 2368
Q ss_pred HHHHhhHhhhcChhhHHHHHHHHHhC-----CCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hhh
Q 045498 79 NPLIHDNWEKQGRFSAMALLQTLERD-----KYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VVT 147 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~ 147 (207)
+.+..+|...|++++|...+++..+. +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 88999999999999999999998731 2222 2458889999999999999999999877643 22222 568
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045498 148 YNILINGLCKKGM-IMEADKLLVQMKE 173 (207)
Q Consensus 148 ~~~li~~~~~~~~-~~~a~~~~~~m~~ 173 (207)
|..+..+|.+.|+ +++|...+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999999995 6999999988764
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=2.9e-08 Score=64.08 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=64.4
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
+...+..+-..+...|++++|...|++..... +.+...|..+..++.+.|++++|...|++..+.... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33455555666666777777777777666554 235566666666777777777777777776665432 4556666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 045498 154 GLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777766654
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=5.2e-08 Score=65.71 Aligned_cols=152 Identities=11% Similarity=-0.047 Sum_probs=111.0
Q ss_pred hhhhhHHHHHH-----cCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-cchhhHHHHHhhHhhhcCh
Q 045498 23 CKIREIDSAIK-----KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVA----QGIT-AELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 23 ~~~g~~~~a~~-----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~ll~~~~~~~~~ 91 (207)
...|++++|.. .+.+ ....++..+...+...|++++|...+++... .+.. ....++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777764 3332 4567889999999999999999999998865 2222 2345678888899999999
Q ss_pred hhHHHHHHHHHhC----CCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCC
Q 045498 92 FSAMALLQTLERD----KYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PGVVTYNILINGLCKKGM 160 (207)
Q Consensus 92 ~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~ 160 (207)
++|...+++..+. +.. .....+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999886544 212 23456788888999999999999999887643 211 112346788889999999
Q ss_pred HHHHHHHHHHHHHc
Q 045498 161 IMEADKLLVQMKEK 174 (207)
Q Consensus 161 ~~~a~~~~~~m~~~ 174 (207)
+++|...+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.7e-07 Score=58.75 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=91.4
Q ss_pred CCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 36 ICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 36 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
+.|+ ...+...-..+.+.|++++|++.|++..+.. +.+..+|..+-.++...|++++|...+++..+.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 4567888889999999999999999988775 5577888889999999999999999999988875 33678899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
.+..++...|++++|.+.|++..+..+. +......+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 9999999999999999999999887432 34444433
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=2.5e-08 Score=66.12 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=97.5
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCH-
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMI- 161 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~- 161 (207)
.+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 3456788999999999987765 347788999999999999999999999999887533 67778888888 7889998
Q ss_pred -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 162 -MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 162 -~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
++|...++...+.. +.+...+..+...+...|++++|...+++.
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998873 335778889999999999999999999875
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=2.3e-08 Score=64.59 Aligned_cols=106 Identities=13% Similarity=-0.054 Sum_probs=87.9
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498 98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177 (207)
Q Consensus 98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (207)
+++..+.. +.+...+..+...+.+.|++++|...|+........ +...|..+..++...|++++|...|++..... +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44444432 225567778888999999999999999999887543 78888999999999999999999999998863 3
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 178 PDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 178 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+...+..+..++...|++++|.+.|++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36688899999999999999999999864
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=4.4e-07 Score=55.23 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG 119 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 119 (207)
+..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555555566666666666666655442 2244445555555555555555555555554443 1234445555555
Q ss_pred HhcCCCHHHHHHHHHHHHhC
Q 045498 120 LCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~ 139 (207)
+...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555444
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=7.7e-07 Score=60.86 Aligned_cols=161 Identities=15% Similarity=-0.063 Sum_probs=125.6
Q ss_pred cchhhhHHHHHhhhhhhhHHHHH---HcC-CCccHHhHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498 10 GNFHVYGIRINGMCKIREIDSAI---KKG-ICLDVFVYSSLINGLCTFN----RLKEAVELFDKMVAQGITAELVTYNPL 81 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g~~~~a~---~~~-~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l 81 (207)
-++..+..+-..|...+++++|. ... -.-++..+..|-..|.. + ++++|+..|++..+.| +...+..|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667788888888999999998 111 12256777888888877 6 8999999999998876 45566677
Q ss_pred HhhHhh----hcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498 82 IHDNWE----KQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNILI 152 (207)
Q Consensus 82 l~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 152 (207)
-..+.. .+++++|...|++..+.+.. .+...+..+-..|.. .+++++|...|++..+. ..+...+..|-
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG 169 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 777766 78999999999999887642 126678888888887 88999999999999887 23555777787
Q ss_pred HHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 045498 153 NGLCKK-G-----MIMEADKLLVQMKEKGC 176 (207)
Q Consensus 153 ~~~~~~-~-----~~~~a~~~~~~m~~~~~ 176 (207)
..|... | ++++|...|+...+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887653 3 89999999999988864
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=1.1e-07 Score=67.97 Aligned_cols=90 Identities=13% Similarity=-0.043 Sum_probs=46.6
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498 13 HVYGIRINGMCKIREIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW 86 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 86 (207)
..+..+...+.+.|++++|+ ... .+.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44445555555555555555 111 12244555555555555566666666555555442 233445555555555
Q ss_pred hhcChhhHHHHHHHHHh
Q 045498 87 EKQGRFSAMALLQTLER 103 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~ 103 (207)
..|++++|...+++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55566665555555443
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.2e-07 Score=57.14 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2233444444444444455555554444444432 113344444444444
Q ss_pred cCCCHHHHHHHHHHHHh
Q 045498 122 RVGRWEEARKKLDQLSE 138 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~ 138 (207)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 44444444444444443
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=2.6e-08 Score=67.33 Aligned_cols=87 Identities=10% Similarity=-0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
..+..+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|...|+...+.. +-+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3445555555555555555555555555422 144455555555555555655555555555441 12334444444454
Q ss_pred HhcCchhHH
Q 045498 191 LVKNETDRA 199 (207)
Q Consensus 191 ~~~~~~~~a 199 (207)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444433
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=2e-07 Score=56.28 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVID 118 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~ 118 (207)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 334444445555555555555555554432 2233344444444445555555555555444432 11 2344444444
Q ss_pred HHhcC-CCHHHHHHHHHHHHhC
Q 045498 119 GLCRV-GRWEEARKKLDQLSEK 139 (207)
Q Consensus 119 ~~~~~-~~~~~a~~~~~~~~~~ 139 (207)
++.+. |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 44455 5555555555444443
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.8e-07 Score=56.32 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=84.7
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
...+..+-..+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4466777788899999999999999988775 336788999999999999999999999999887543 67788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 045498 155 LCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~ 174 (207)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=2.4e-07 Score=59.14 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=85.1
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
+...+..+-..+...|++++|...|++..... +.+...|..+..++.+.|++++|...++...+.... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34556667778899999999999999988875 347788889999999999999999999999987544 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 045498 154 GLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~ 174 (207)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=9.2e-07 Score=53.79 Aligned_cols=110 Identities=9% Similarity=-0.067 Sum_probs=88.8
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 153 (207)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34567778888899999999999999988764 336778888999999999999999999998887533 6778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
++...|++++|...++...+.+ +.+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999999999999988763 2234444433
No 142
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=1.7e-07 Score=58.30 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc----HHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN----IEVYS 114 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~ 114 (207)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555555555666666666666555442 233444455555555555555555555554433210 01 33444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
.+..++.+.|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=2.3e-07 Score=57.64 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=94.6
Q ss_pred hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 045498 75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PG----VVTY 148 (207)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~ 148 (207)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888999999999999999988765 346788889999999999999999999988776321 12 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
..+...+.+.|++++|...|+...+. .|+......+.......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999886 457766666666555443
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=4e-07 Score=57.34 Aligned_cols=118 Identities=10% Similarity=-0.160 Sum_probs=94.8
Q ss_pred CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3456788888899999999999999999988775 336788999999999999999999999999887543 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHH
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVIQGFL 191 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~ 191 (207)
..++...|++++|...|+...+.. ...+......+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987652 2224444554444433
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=3.2e-07 Score=58.56 Aligned_cols=99 Identities=7% Similarity=-0.108 Sum_probs=84.2
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+...+..+...+.+.|++++|+..|++..... +.+...|..+-.++...|++++|...+++..+... .+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 34556667778889999999999999998875 45777888888999999999999999999888753 36678888899
Q ss_pred HHhcCCCHHHHHHHHHHHHhC
Q 045498 119 GLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~ 139 (207)
++...|++++|.+.|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988876
No 146
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.75 E-value=2e-06 Score=65.74 Aligned_cols=150 Identities=15% Similarity=0.036 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh----cChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 42 VYSSLINGLCTFN---RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK----QGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 42 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
.+..|-..|.+.| ++++|+..|++..+.| +++...+..+-..|... ++.++|...|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4555555555555 5555555555555554 22222223333333222 35555555555544 22 222333
Q ss_pred HHHHH-H--hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 115 LVIDG-L--CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-----MIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 115 ~li~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
.+-.. + ...+++++|.+.|++..+.| +...+..|-..|. .| ++++|...|+... ..+...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence 33322 2 23455555555555555443 3344444444443 22 5555555554443 1233444444
Q ss_pred HHHHHh----cCchhHHHHHHH
Q 045498 187 IQGFLV----KNETDRASSFLK 204 (207)
Q Consensus 187 ~~~~~~----~~~~~~a~~~~~ 204 (207)
...|.. ..+.++|.++|+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHH
Confidence 444433 224444554444
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.8e-07 Score=66.17 Aligned_cols=159 Identities=13% Similarity=0.030 Sum_probs=114.1
Q ss_pred hHHHHHhhhhhhhHHHHH-------HcCCC-cc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---cc--hhh
Q 045498 15 YGIRINGMCKIREIDSAI-------KKGIC-LD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT---AE--LVT 77 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~-------~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~ 77 (207)
+...+..+...|++++|. ..... ++ ...+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345566777888888887 11111 11 123444566677889999999999998753211 11 347
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhC----CCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCC-Chh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERD----KYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG----LVP-GVV 146 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~~ 146 (207)
++.+-..|...|++++|...+++..+. +..+ ...++..+...|.+.|++++|.+.+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888999999999999999999987622 1111 22688899999999999999999999876531 111 156
Q ss_pred hHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045498 147 TYNILINGLCKKGMIMEA-DKLLVQMKE 173 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a-~~~~~~m~~ 173 (207)
+|..+..+|.+.|++++| ...++....
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788899999999999999 777776653
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.74 E-value=1.4e-06 Score=54.80 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=88.1
Q ss_pred CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
+.++..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3467888999999999999999999999998875 4567888999999999999999999999988875 3367889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..++...|++++|...+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=3.4e-07 Score=59.84 Aligned_cols=100 Identities=11% Similarity=-0.081 Sum_probs=88.2
Q ss_pred cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 152 (207)
.+...+..+-..+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|...+++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 355678888899999999999999999988875 337888999999999999999999999999987544 688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 045498 153 NGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.+|.+.|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998876
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=5.1e-07 Score=60.92 Aligned_cols=133 Identities=14% Similarity=-0.008 Sum_probs=100.3
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----------------hhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----------------VTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
....+..+...+.+.|++++|+..|++..+... .+. .++..+-.++...|++++|...+++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345677788889999999999999999987531 122 678888889999999999999999988
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 045498 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEK 174 (207)
Q Consensus 103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~ 174 (207)
+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++. ..+..+...
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 875 346788999999999999999999999999887433 5677778888887777777666 445555443
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=2e-07 Score=56.26 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=71.5
Q ss_pred chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILI 152 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li 152 (207)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44566677777777888888888888776654 235667777777777888888888888777765321 0466677777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 045498 153 NGLCKK-GMIMEADKLLVQMKEK 174 (207)
Q Consensus 153 ~~~~~~-~~~~~a~~~~~~m~~~ 174 (207)
.++.+. |++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 777788 8888888888877765
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=8.6e-07 Score=55.49 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
.+..+-..+.+.|++++|+..|++..+.. |-+..+|..+-.++...|++++|+..+++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555555555555555555442 2334445555555555555555555555443
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.4e-06 Score=56.89 Aligned_cols=101 Identities=9% Similarity=-0.023 Sum_probs=89.5
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +-+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778889999999999999999999998875 4477889999999999999999999999998875 33688899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCC
Q 045498 118 DGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 154
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=4e-06 Score=60.61 Aligned_cols=190 Identities=7% Similarity=-0.005 Sum_probs=128.4
Q ss_pred hhHHHHHhhhhhh--hHHHHH------HcCCCccHHhHHHHHHHH----Hhc---CChhHHHHHHHHHHhCCCCcchhhH
Q 045498 14 VYGIRINGMCKIR--EIDSAI------KKGICLDVFVYSSLINGL----CTF---NRLKEAVELFDKMVAQGITAELVTY 78 (207)
Q Consensus 14 ~~~~ll~~~~~~g--~~~~a~------~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~ 78 (207)
.|+.--..+...| ++++++ -...+-+..+|+.--..+ ... +++++++.+++++.+.. +-+..+|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3444444445555 666666 111222444555544444 344 67888888888887765 4566777
Q ss_pred HHHHhhHhhhcChh--hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 79 NPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR------WEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 79 ~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
+---..+.+.+.++ +++..++++.+..+. |-..|+-....+.+.+. ++++.+.++.+....+. |...|+-
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHH
Confidence 77777777777777 888888888877644 66777766666666666 78888888888877655 7778888
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 151 LINGLCKKGMIM-EADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 151 li~~~~~~~~~~-~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+-..+.+.|+.. .+..+...+.+.+ -..+...+..+...+.+.|+.++|.++++.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777777777643 3445555554432 1346788888999999999999999998864
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=7.5e-07 Score=55.77 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=84.9
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PG----VVTYN 149 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~ 149 (207)
..+..+-..+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|.+.+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778888999999999999999988775 336788999999999999999999999988765221 11 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
.+-.++...|++++|.+.|++..+. .||+.+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7788888999999999999988775 5676554433
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.2e-06 Score=54.50 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=45.7
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc----hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE----LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
+...+..+...+.+.|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34455555555666666666666666655542 22 2334444444444444444444444444332 11333444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
.+..++...|++++|.+.+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 157
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.66 E-value=2.3e-05 Score=59.81 Aligned_cols=181 Identities=15% Similarity=-0.002 Sum_probs=132.4
Q ss_pred cchhhhHHHHHhhhhhh---hHHHHH------HcCCCccHHhHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCcchh
Q 045498 10 GNFHVYGIRINGMCKIR---EIDSAI------KKGICLDVFVYSSLINGLCTF----NRLKEAVELFDKMVAQGITAELV 76 (207)
Q Consensus 10 p~~~~~~~ll~~~~~~g---~~~~a~------~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~ 76 (207)
.++..+..+-..|.+.| +.++|+ ...-.++...+..+-..|... +++++|+..|++.. .| +..
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~ 249 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPA 249 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STH
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHH
Confidence 34447777888888888 888877 223344555556677777655 79999999999987 44 444
Q ss_pred hHHHHHhh-H--hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhCCCCCChhhH
Q 045498 77 TYNPLIHD-N--WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG-----RWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 77 ~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
.+..|-.. + ...++.++|...|++..+.| +...+..+-..|. .| ++++|.+.|++.. .| +...+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 55555554 3 45889999999999998877 5556666666666 44 9999999999887 43 66777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498 149 NILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK 205 (207)
Q Consensus 149 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 205 (207)
..|-..|.. ..++++|...|+...+.| +......|...|.. ..+.++|..++++
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 778777776 349999999999988876 34556667777764 4578888888875
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.66 E-value=9.6e-08 Score=73.47 Aligned_cols=121 Identities=11% Similarity=-0.061 Sum_probs=69.7
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
+-..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344556666666666666665543 224566666666677777777777777766665432 45566666666777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCchhHHHHHHH
Q 045498 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQG--FLVKNETDRASSFLK 204 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 204 (207)
+++|...|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777666542 1123344444444 566666766666655
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.2e-06 Score=53.69 Aligned_cols=112 Identities=11% Similarity=-0.060 Sum_probs=90.6
Q ss_pred cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN----IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
.+...+..+...+...|++++|...+++..+.. |+ ...+..+..++...|++++|.+.++...+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 345677888889999999999999999988764 44 678888889999999999999999998887433 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 045498 149 NILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQG 189 (207)
Q Consensus 149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 189 (207)
..+..++...|++++|...|++..+. .| +...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 88999999999999999999999876 34 34444444333
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.64 E-value=6.9e-07 Score=55.44 Aligned_cols=96 Identities=7% Similarity=-0.178 Sum_probs=71.0
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
.+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+.... +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455567777888888888888877764 236677777778888888888888888887776433 5667777778888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 045498 157 KKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~ 174 (207)
+.|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877654
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.64 E-value=5.4e-07 Score=58.01 Aligned_cols=134 Identities=10% Similarity=-0.082 Sum_probs=83.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cc----hhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CCc-c
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AE----LVTYNPLIHDNWEKQGRFSAMALLQTLERDK----YEL-N 109 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~-~ 109 (207)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677777888888888888888877643110 11 1356667777777788888877777754331 111 1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666667777777777777777665532 111 1133455666667777777777777766554
No 162
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.64 E-value=3.6e-06 Score=67.28 Aligned_cols=168 Identities=12% Similarity=-0.054 Sum_probs=114.8
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCc------------chhhHHHHHhhHhhhcChhhHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---------ITA------------ELVTYNPLIHDNWEKQGRFSAMA 96 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~------------~~~~~~~ll~~~~~~~~~~~a~~ 96 (207)
.+...|-..+...-+.|++++|.++|+.+.+.. -.| ...+|-..+....+.++.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355556677777778889999999998887531 012 12357777777778888889999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 97 LLQTLERDKYELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 97 ~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+|.+..+....+....|......-.+. ++.+.|.++|+...+. ..-+...+...+......|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 998887651111223333332222333 4588999999888776 22245566677777778889999999999887763
Q ss_pred CCC--ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 176 CFP--DSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 176 ~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+ ....|...++.-.+.|+.+.+.++.+++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211 3356777777778889888888888765
No 163
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.63 E-value=2.8e-06 Score=67.91 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=126.3
Q ss_pred ccHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---------C
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAV-ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---------E 107 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------~ 107 (207)
-+...|-.....+.+.|+.++|. ++|++.... +|.+...|-..+...-+.|++++|..+|+....... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 35667777777778889999997 999999864 455666677788888889999999999999876410 1
Q ss_pred c------------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 045498 108 L------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEK 174 (207)
Q Consensus 108 ~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 174 (207)
| ...+|...+....+.|+.+.|..+|....+.-..+....|...+..-.+. ++++.|.++|+...+.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 23467888888888999999999999998761112334444433333444 4589999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 175 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
.+-+...+...++.....|+.+.|..+|++.+
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44466667788888888999999999998753
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.61 E-value=3.3e-07 Score=59.06 Aligned_cols=131 Identities=11% Similarity=-0.032 Sum_probs=100.1
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC---c--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCC-Ch
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE---L--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG----LVP-GV 145 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~ 145 (207)
.++..+-..+...|++++|...+++..+.... + ...++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999887654211 1 12477888899999999999999999876531 111 14
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 146 VTYNILINGLCKKGMIMEADKLLVQMKEK----GCF-PDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56778889999999999999999987653 111 12356788889999999999999999874
No 165
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=2.3e-06 Score=60.86 Aligned_cols=139 Identities=9% Similarity=-0.018 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHH
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGL 120 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~ 120 (207)
+-.....+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...+.. .|. ...+..+-.++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3445667788999999999999987754 444355666668999999999999998554432 221 34677888899
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (207)
.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 999999999999999886433243 346677778889999999999999999987 4554444433
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=2.7e-06 Score=65.07 Aligned_cols=88 Identities=6% Similarity=-0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
..|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +-+..++..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555555555555555555555554322 44455555555555555555555555555431 11334445555555
Q ss_pred HhcCchhHHH
Q 045498 191 LVKNETDRAS 200 (207)
Q Consensus 191 ~~~~~~~~a~ 200 (207)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=3.6e-07 Score=70.30 Aligned_cols=121 Identities=8% Similarity=-0.009 Sum_probs=95.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
+...+.+.|++++|++.|++..+.. +.+..+|..+-.++.+.|++++|...+++..+.. +.+...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445667899999999999998874 4467889999999999999999999999998875 3367889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILING--LCKKGMIMEADKLLV 169 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 169 (207)
+++|.+.+++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998887433 44455555555 788899999999988
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=2.8e-06 Score=65.00 Aligned_cols=131 Identities=11% Similarity=-0.040 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--------------hhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--------------LVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 105 (207)
...|..+-..+.+.|++++|+..|++..+...... ..+|..+-.++.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45688888899999999999999999987531111 4788889999999999999999999998875
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 045498 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK-LLVQMK 172 (207)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~ 172 (207)
+.+...|..+..+|.+.|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337888999999999999999999999999987543 56788888899999998887764 455543
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=1.8e-06 Score=53.56 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 122 (207)
+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.... +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445556667777777777777776653 335566666666777777777777777776665422 45566666677777
Q ss_pred CCCHHHHHHHHHHHHhC
Q 045498 123 VGRWEEARKKLDQLSEK 139 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~ 139 (207)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=8.3e-06 Score=61.45 Aligned_cols=158 Identities=8% Similarity=-0.086 Sum_probs=97.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcch----------------hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-cc-
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQGITAEL----------------VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LN- 109 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~- 109 (207)
..+.+.|++++|++.|.+..+....... ..+..+...|...|++++|...+......-.. ++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456778888888888887764321110 13566777888888888888877765432111 11
Q ss_pred --H-HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----
Q 045498 110 --I-EVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCF---- 177 (207)
Q Consensus 110 --~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---- 177 (207)
. .+.+.+-..+...|+++.+.++++..... +..+. ..++..+...|...|++++|..+++++...-..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 22333333445567788887777765432 22222 446677778888888888888888877643111
Q ss_pred C-ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 178 P-DSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 178 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+ ...++..+++.|...|++++|..++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 1 234677777888888888888877765
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.52 E-value=4.7e-06 Score=62.00 Aligned_cols=123 Identities=9% Similarity=-0.059 Sum_probs=88.3
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhC---------------CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERD---------------KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 142 (207)
+..+-..+.+.|++++|...|++..+. .-+.+...|..+..+|.+.|++++|.+.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 334444555555555555555554431 11224567888888999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 202 (207)
+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+.
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999988763 23667777788888888887776543
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.52 E-value=8.9e-07 Score=54.45 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=53.2
Q ss_pred hcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 88 KQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
.|++++|...|++..+.+ -+.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666543 1224456666667777777777777777777666433 4566666677777777777777
Q ss_pred HHHHHHHHc
Q 045498 166 KLLVQMKEK 174 (207)
Q Consensus 166 ~~~~~m~~~ 174 (207)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=9.8e-06 Score=50.24 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=43.7
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VVTYNILINGLCKK 158 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 158 (207)
.+...|++++|...+++..+..... ....+..+..++.+.|++++|...++...+.... + ...+..+..++.+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHc
Confidence 3444455555555555544432110 0134444455555555555555555555544221 1 33445555555555
Q ss_pred CCHHHHHHHHHHHHHc
Q 045498 159 GMIMEADKLLVQMKEK 174 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~ 174 (207)
|++++|...|+.+.+.
T Consensus 90 g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666555544
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.51 E-value=3.7e-06 Score=62.57 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=100.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ---------------GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK 105 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 105 (207)
..+..+-..+.+.|++++|+..|++..+. --+.+..+|..+-.++.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888899999999999999998761 112345678888899999999999999999998875
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
+.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 336788999999999999999999999999887433 56677777777777777766654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=1.1e-05 Score=50.00 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc---HHHHHHH
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN---IEVYSLV 116 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 116 (207)
+..+...+.+.|++++|...|++..+.. +.+. ..+..+..++...|++++|...+++..+.... + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 3445667889999999999999998764 2233 47777888999999999999999998876432 3 6678888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
..++.+.|++++|...++...+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 899999999999999999998863
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2e-05 Score=59.37 Aligned_cols=165 Identities=8% Similarity=-0.055 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcch----hhHHHHHhhHhhhcChhhHHHHHHHHHh----CCCCc-cHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAEL----VTYNPLIHDNWEKQGRFSAMALLQTLER----DKYEL-NIE 111 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~ 111 (207)
++..+...|.+.|++++|.+.+.++.+.- ..++. .+.+.+-..+...|+.+.+..++..... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 47788999999999999999999876421 11121 2333344445567889999998887643 22222 356
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--h
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCF-P-D--S 180 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~-p-~--~ 180 (207)
++..+...+...|++++|..+++..... +-++ ....+..++..|...|++++|..+++..... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999887643 1112 2457888899999999999999999987643 121 2 1 2
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 181 TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+..+...+...|++++|...+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777788899999998887653
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.1e-05 Score=52.49 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+...|..+..+|.+.|++++|...++...+.... +...|..+..+|...|++++|...|+...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666777777777777777777777766432 5667777777777777777777777777665
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=8.8e-07 Score=54.47 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=70.0
Q ss_pred hcCChhHHHHHHHHHHhCC--CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498 52 TFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA 129 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 129 (207)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|...+++..+.... +...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998864 2345567888889999999999999999998887533 677888899999999999999
Q ss_pred HHHHHHHHhCC
Q 045498 130 RKKLDQLSEKG 140 (207)
Q Consensus 130 ~~~~~~~~~~g 140 (207)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887763
No 179
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.1e-05 Score=57.51 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=87.4
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI 117 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 117 (207)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778888899999999999999999998864 4477888899999999999999999999988875 33678889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC
Q 045498 118 DGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.++.+.|++++|...+++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=1.5e-05 Score=51.79 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=83.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQ--------G---------ITAELVTYNPLIHDNWEKQGRFSAMALLQTLE 102 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (207)
...+...-..+.+.|++++|+..|.+.... . .+.+...|..+-.++.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888899999999999999988764 1 12234678888889999999999999999988
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
+.. +.+...|..+..+|...|++++|...|+...+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 3468889999999999999999999999998873
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.39 E-value=3.2e-06 Score=65.06 Aligned_cols=140 Identities=11% Similarity=-0.082 Sum_probs=100.5
Q ss_pred CCCccHHhHHHHHH----------HHHhcCChhHHHHHHHHHHhC-----C--CCcchhhHHHHHhhHhhhcChhhHHHH
Q 045498 35 GICLDVFVYSSLIN----------GLCTFNRLKEAVELFDKMVAQ-----G--ITAELVTYNPLIHDNWEKQGRFSAMAL 97 (207)
Q Consensus 35 ~~~~~~~~~~~ll~----------~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~ 97 (207)
+.+++..++..++. .+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456655544333 355789999999999887642 1 112345788899999999999999998
Q ss_pred HHHHHhC-----CC-Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCC-CC-hhhHHHHHHHHHhcCCHHH
Q 045498 98 LQTLERD-----KY-EL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLV-PG-VVTYNILINGLCKKGMIME 163 (207)
Q Consensus 98 ~~~m~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~-~~-~~~~~~li~~~~~~~~~~~ 163 (207)
+++..+. |. .| ...+++.+...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...+.+++
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8876533 21 22 356788999999999999999999887653 2432 22 3345666678888899999
Q ss_pred HHHHHHHHHHc
Q 045498 164 ADKLLVQMKEK 174 (207)
Q Consensus 164 a~~~~~~m~~~ 174 (207)
|+.+|..+++.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=3.3e-06 Score=62.02 Aligned_cols=144 Identities=11% Similarity=-0.046 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
..+..+-..+.+.|++++|+..|++..+.. |+... +...++.+++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 334555555666666666666666665542 22221 11112222211111 012566677777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH-HHhcCchhH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQG-FLVKNETDR 198 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~~~~~~ 198 (207)
.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+. .| +..++..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765432 5667777777777777777777777776554 23 33344444433 223445556
Q ss_pred HHHHHHhh
Q 045498 199 ASSFLKKN 206 (207)
Q Consensus 199 a~~~~~~m 206 (207)
+.+.|++|
T Consensus 318 a~~~~~~~ 325 (338)
T 2if4_A 318 QKEMYKGI 325 (338)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 66666554
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=4.1e-06 Score=59.54 Aligned_cols=124 Identities=9% Similarity=-0.064 Sum_probs=97.0
Q ss_pred HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHh
Q 045498 80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCK 157 (207)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~ 157 (207)
.+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...+.. .|. ...+..+-.++.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 35567888999999999999887654 443366667778899999999999998555431 111 2367778899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 158 KGMIMEADKLLVQMKEKGCFPD--STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|++++|...|++.......|. .........++.+.|+.++|..+|+++
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999885533253 346677888899999999999999876
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=4.1e-06 Score=64.49 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=93.3
Q ss_pred hHhhhcChhhHHHHHHHHHhCC---C---Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-C-ChhhHH
Q 045498 84 DNWEKQGRFSAMALLQTLERDK---Y---EL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-P-GVVTYN 149 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~---~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~ 149 (207)
.+...|++++|..++++..+.. + .| ...+++.+...|...|++++|..++++..+. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998865431 1 12 3578999999999999999999999877543 322 2 255789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 150 ILINGLCKKGMIMEADKLLVQMKEK-----GC-FPD-STSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|...|...|++++|..++++..+- |- .|+ ..+...+-.++...+.+++|...++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 31 232 345566777888899999999988765
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-06 Score=52.58 Aligned_cols=90 Identities=18% Similarity=0.013 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------hh
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-------ST 181 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~ 181 (207)
+...+..+...+.+.|++++|.+.+++..+.... +...+..+..++.+.|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 3455666666777777777777777776665332 5566667777777777777777777777654 333 34
Q ss_pred hHHHHHHHHHhcCchhHHHH
Q 045498 182 SFNTVIQGFLVKNETDRASS 201 (207)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~ 201 (207)
.+..+..++...|+.+.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 45555555555555554443
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=3.8e-06 Score=61.68 Aligned_cols=143 Identities=9% Similarity=0.016 Sum_probs=71.1
Q ss_pred hhhHHHHHhhhhhhhHHHHH---H--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498 13 HVYGIRINGMCKIREIDSAI---K--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~---~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 87 (207)
..+..+...+.+.|++++|. . ....|+... +...++.+++...+ ....|..+-.++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 44566667777788888887 2 222333221 12223333333222 11367777778888
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMIMEADK 166 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~ 166 (207)
.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+... ....+..+++..
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877764 336778888888888888999998888888765322 34444444444 234456677777
Q ss_pred HHHHHHHc
Q 045498 167 LLVQMKEK 174 (207)
Q Consensus 167 ~~~~m~~~ 174 (207)
.|..+...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777654
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00016 Score=53.01 Aligned_cols=189 Identities=11% Similarity=0.009 Sum_probs=121.0
Q ss_pred hHHHHHhhhhhh-hHHHHH------HcCCCccHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498 15 YGIRINGMCKIR-EIDSAI------KKGICLDVFVYSSLINGLCTF-N-RLKEAVELFDKMVAQGITAELVTYNPLIHDN 85 (207)
Q Consensus 15 ~~~ll~~~~~~g-~~~~a~------~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 85 (207)
|+.--..+...| .+++++ -...+-+..+|+.--..+.+. + ++++++++++++.+.. +-+..+|+--...+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl 169 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444334444445 355555 223344566677766666665 5 7788888888887664 44666777666666
Q ss_pred hhhcChh--------hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCChhhHHH
Q 045498 86 WEKQGRF--------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-------WEEARKKLDQLSEKGLVPGVVTYNI 150 (207)
Q Consensus 86 ~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (207)
.+.+.++ ++++.++++.+..+. |...|+-....+.+.++ ++++.+.+++.....+. |...|+-
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 6666666 788888888777644 77777777777777765 67888888877776544 6777777
Q ss_pred HHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 151 LINGLCKKGMI--------------------MEADKLLVQMKEKG-----CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 151 li~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
+-..+.+.|.. ........++...+ -.++...+..|+..|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66666665543 23333333333221 135777888899999999999999988876
Q ss_pred h
Q 045498 206 N 206 (207)
Q Consensus 206 m 206 (207)
+
T Consensus 328 l 328 (349)
T 3q7a_A 328 L 328 (349)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.30 E-value=0.00027 Score=51.05 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=122.6
Q ss_pred cHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcchhhHHHHHhhH----hhh---cChhhHHHHHHHHHhCCCCcc
Q 045498 39 DVFVYSSLINGLCTFN--RLKEAVELFDKMVAQGITAELVTYNPLIHDN----WEK---QGRFSAMALLQTLERDKYELN 109 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~ 109 (207)
+..+|+.--..+...+ +++++++.++.+...+ +-+..+|+.--..+ ... +++++++.+++.+.+...+ +
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-n 143 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-N 143 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-C
Confidence 3455777777777777 8999999999988765 44556666655555 444 6788899999998887644 7
Q ss_pred HHHHHHHHHHHhcCCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChh
Q 045498 110 IEVYSLVIDGLCRVGRWE--EARKKLDQLSEKGLVPGVVTYNILINGLCKKGM------IMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~p~~~ 181 (207)
-..|+--.-.+.+.|.++ ++.+.++.+.+..+. |-..|+.-.....+.+. ++++.+.++.+.... +-|..
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~S 221 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPS 221 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCcc
Confidence 778887777778888887 899999999888765 78888877777777776 888999999998884 34888
Q ss_pred hHHHHHHHHHhcCchhH-HHHHHHh
Q 045498 182 SFNTVIQGFLVKNETDR-ASSFLKK 205 (207)
Q Consensus 182 ~~~~l~~~~~~~~~~~~-a~~~~~~ 205 (207)
.|+.+-..+.+.|+... +..+.++
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 88888888888888554 3344443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=5.7e-05 Score=47.84 Aligned_cols=113 Identities=12% Similarity=-0.084 Sum_probs=86.1
Q ss_pred cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHH
Q 045498 53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEE 128 (207)
Q Consensus 53 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~ 128 (207)
.+++++|++.|++..+.|. |+.. |-..|...+..++|.+.|++..+.| +...+..+-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3467888899988888872 3322 5556666677788888888887775 55667777777776 788899
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 176 (207)
|.+.|++..+.| +...+..|-..|.. .+++++|...|+...+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998888875 66778888888887 7888999999888887753
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.20 E-value=0.00019 Score=45.43 Aligned_cols=110 Identities=10% Similarity=-0.122 Sum_probs=81.0
Q ss_pred hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCH
Q 045498 86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMI 161 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~ 161 (207)
...++.++|...|++..+.| .|... +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34456778888888887777 33332 5566666677788888888887764 66777777777777 7788
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHhh
Q 045498 162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKKN 206 (207)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 206 (207)
++|...|+...+.| ++.++..|-..|.. .++.++|.+++++.
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 88888888887764 56777778888877 78888888888753
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=0.00029 Score=55.41 Aligned_cols=149 Identities=8% Similarity=-0.021 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC----------hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG----------RFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 123 (207)
...++|++.++++...+ +-+..+|+.--.++...++ +++++..++.+.+...+ +..+|+.---.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34567899999998875 3455667666666666666 88999999999887644 778888888888888
Q ss_pred C--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------
Q 045498 124 G--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK------- 193 (207)
Q Consensus 124 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------- 193 (207)
+ +++++.+.++++.+...+ +..+|+.--....+.| .++++.+.++.+.+.... |..+|......+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 779999999999998766 8888988888888888 899999999998876433 777888877776663
Q ss_pred -------CchhHHHHHHHhh
Q 045498 194 -------NETDRASSFLKKN 206 (207)
Q Consensus 194 -------~~~~~a~~~~~~m 206 (207)
+.++++.+++++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 5678888877664
No 192
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.0005 Score=50.48 Aligned_cols=154 Identities=8% Similarity=-0.045 Sum_probs=117.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC-C-C
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV-G-R 125 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~ 125 (207)
...+....++|+++++++...+ +-+..+|+.--.++...+ .+++++..++.+.....+ +..+|+.--..+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344556678999999999875 445566777766777777 599999999999988654 777888777776666 6 8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc--
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM--------EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE-- 195 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 195 (207)
+++++++++.+.+...+ |..+|+.-.....+.|.++ ++.+.++++.+.... |..+|+.-...+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 89999999999988655 7788877666666666665 899999999887543 77888888888877775
Q ss_pred -----hhHHHHHHHhh
Q 045498 196 -----TDRASSFLKKN 206 (207)
Q Consensus 196 -----~~~a~~~~~~m 206 (207)
+++++++++++
T Consensus 219 ~~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 219 TSSRSLQDELIYILKS 234 (349)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 67777777654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=4.2e-05 Score=49.49 Aligned_cols=94 Identities=12% Similarity=-0.074 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC------C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVP------G-----VVTYNILINGLCKKGMIMEADKLLVQMKEK-----GC 176 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~ 176 (207)
+...-..+.+.|++++|.+.|++..+..... + ...|..+..++.+.|++++|...+++..+. -+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444555566666666665555442210 1 125666666666666666666666666553 11
Q ss_pred CC-ChhhH----HHHHHHHHhcCchhHHHHHHHhh
Q 045498 177 FP-DSTSF----NTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 177 ~p-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.| +...| .....++...|++++|+..|++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 33 33455 66666777777777777766653
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.17 E-value=3.5e-05 Score=46.87 Aligned_cols=79 Identities=11% Similarity=-0.015 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
.+...+++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555554443 224455555666666666666666666666554322 34555566666666666666666666555
Q ss_pred H
Q 045498 173 E 173 (207)
Q Consensus 173 ~ 173 (207)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=7.6e-05 Score=48.30 Aligned_cols=76 Identities=16% Similarity=0.027 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK-------GLVPGVVTY----NILINGLCKKGMIMEADKLLVQMKEK----- 174 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~----- 174 (207)
..|+.+-.++.+.|++++|...+++..+. ... +...| ...-.++...|++++|...|+...+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 37888888888889998888888888775 432 45677 88888889999999999999988753
Q ss_pred CCCCChhhHHHHH
Q 045498 175 GCFPDSTSFNTVI 187 (207)
Q Consensus 175 ~~~p~~~~~~~l~ 187 (207)
|+.+........+
T Consensus 137 ~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 137 GETPGKERMMEVA 149 (159)
T ss_dssp SCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555444444333
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=0.00011 Score=42.19 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
...+..+...+.+.|++++|...+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456666667777777777777777777665432 55667777777777888888888877777652 2244555555555
Q ss_pred HHh
Q 045498 190 FLV 192 (207)
Q Consensus 190 ~~~ 192 (207)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=7.4e-05 Score=45.38 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.|.+.+++..+.... +...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467778887776533 67889999999999999999999999998873 346778999999999999999999999875
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.002 Score=47.06 Aligned_cols=162 Identities=9% Similarity=0.022 Sum_probs=115.8
Q ss_pred HhHHHHHHHH---HhcCChh-HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC----------hhhHHHHHHHHHhCCC
Q 045498 41 FVYSSLINGL---CTFNRLK-EAVELFDKMVAQGITAELVTYNPLIHDNWEKQG----------RFSAMALLQTLERDKY 106 (207)
Q Consensus 41 ~~~~~ll~~~---~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~ 106 (207)
..|..+...+ .+.|.++ +|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.+.....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P 105 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 105 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC
Confidence 3455444433 3456655 7999999998875 3344455554333333332 5788889988887764
Q ss_pred CccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhH
Q 045498 107 ELNIEVYSLVIDGLCRVG--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM-IMEADKLLVQMKEKGCFPDSTSF 183 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~ 183 (207)
+ +..+|+.---.+.+.+ .++++.++++.+.+...+ |...|+.--....+.|. ++++.+.++.+.+... -|..+|
T Consensus 106 K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 106 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp T-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred C-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 4 7778887777777777 489999999999998765 88888888877888888 5899999999998754 377778
Q ss_pred HHHHHHHHhc--------------CchhHHHHHHHhh
Q 045498 184 NTVIQGFLVK--------------NETDRASSFLKKN 206 (207)
Q Consensus 184 ~~l~~~~~~~--------------~~~~~a~~~~~~m 206 (207)
+.....+.+. +.++++++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 7777666655 4577787777654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.3e-05 Score=45.85 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=36.9
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+-.++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555566666666666666666665543 334455555555555666666666666555544
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.95 E-value=0.00018 Score=41.27 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+..+-..+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3334444444444444444444444332 113344444455555555555555555555443
No 201
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.95 E-value=0.0018 Score=50.08 Aligned_cols=156 Identities=10% Similarity=-0.059 Sum_probs=78.4
Q ss_pred ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------------
Q 045498 38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------------ 105 (207)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------ 105 (207)
.++..|-..+..+.+.|++++|..+|++.... |.+...+.. +....+.++. ++.+.+.-
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------C
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence 34666777777777888999999999988876 333322221 1111111111 22211110
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498 106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (207)
......+|...+....+.++.+.|..+|+.. ... ..+...|......-... ++++.|..+|+...+.- +-++..+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 0111234555555555566677777777766 221 12333333222211222 24677777777666542 11233344
Q ss_pred HHHHHHHhcCchhHHHHHHHh
Q 045498 185 TVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~ 205 (207)
..++...+.|+.+.|..+|+.
T Consensus 359 ~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 455555566666666666654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=0.00011 Score=43.66 Aligned_cols=84 Identities=13% Similarity=-0.083 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVI 187 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~ 187 (207)
+...+..+..+|.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|...|++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4556666667777777777777777777666433 45566777777777777777777777665431 123444444444
Q ss_pred HHHHhc
Q 045498 188 QGFLVK 193 (207)
Q Consensus 188 ~~~~~~ 193 (207)
..+.+.
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444443
No 203
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0023 Score=46.71 Aligned_cols=147 Identities=7% Similarity=-0.055 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKK 132 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 132 (207)
+++++.+++.+...+ +-+..+|+.--..+...+ .+++++.+++.+.+.... |-..|+--.-.+.+.|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678999999998765 557778888777777777 488999999999988744 77888877777778888 6999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----
Q 045498 133 LDQLSEKGLVPGVVTYNILINGLCKK--------------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK----- 193 (207)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----- 193 (207)
++.+.+..+. |...|+.....+.+. +.++++.+.+....... +-|..+|+-+--.+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 9999998765 788888776666655 45788999999888763 33666676554444444
Q ss_pred ------CchhHHHHHHHhh
Q 045498 194 ------NETDRASSFLKKN 206 (207)
Q Consensus 194 ------~~~~~a~~~~~~m 206 (207)
+.++++++.++++
T Consensus 246 ~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3567777777665
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=0.00014 Score=46.96 Aligned_cols=70 Identities=4% Similarity=-0.148 Sum_probs=36.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh----------hHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498 52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF----------SAMALLQTLERDKYELNIEVYSLVIDGLC 121 (207)
Q Consensus 52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 121 (207)
+.+++++|++.+++..+.. +.+...|..+-.++...++++ +|+..|++..+.... +...|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4455666666666666554 445556665666666655543 455555554444322 3444444545544
Q ss_pred cC
Q 045498 122 RV 123 (207)
Q Consensus 122 ~~ 123 (207)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=0.00014 Score=46.98 Aligned_cols=104 Identities=11% Similarity=-0.076 Sum_probs=72.9
Q ss_pred HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR----------WEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
..+.+.+++|...++...+.. +-+...|..+-.++...++ +++|...|++..+.... +..+|..+-.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 445667778888888877765 3366677777667776655 35888888888877544 56677778787
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498 155 LCKKG-----------MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 155 ~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 192 (207)
|...| ++++|...|++..+. .|+...|...+...-+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 77664 788888888888775 5666677666665544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00017 Score=42.69 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|...|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788899999999999999999999999874 335678999999999999999999999874
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0015 Score=51.32 Aligned_cols=153 Identities=7% Similarity=-0.043 Sum_probs=119.8
Q ss_pred cHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCC
Q 045498 39 DVFVYSSLINGLCTFNR----------LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKY 106 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~ 106 (207)
+..+|+.--.++.+.++ ++++++.++++.+.. +-+..+|+.--.++.+.+ ++++++..++++.+...
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~ 140 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE 140 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc
Confidence 34556665555666666 899999999999875 557788888888888888 67999999999999874
Q ss_pred CccHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHH
Q 045498 107 ELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK--------------GMIMEADKLLVQM 171 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m 171 (207)
. +...|+---..+.+.| .++++.+.++++.+..+. |...|+.....+.+. +.++++.+.++..
T Consensus 141 ~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 141 R-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp T-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 4 7888888888888888 899999999999988765 788888877777663 5678999999888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCc
Q 045498 172 KEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 172 ~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
.... +-|..+|.-+--.+.+.++
T Consensus 219 i~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 219 FFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HhhC-CCCccHHHHHHHHHhcCCC
Confidence 8763 3366777776666666555
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=7.5e-05 Score=56.65 Aligned_cols=85 Identities=9% Similarity=-0.128 Sum_probs=67.5
Q ss_pred cCCCHHHHHHHHHHHHhC-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEK-----GLV-P-GVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G-CFPD-STSFNTVI 187 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~ 187 (207)
..|++++|..++++..+. |.. | ...+++.|..+|...|++++|..++++..+- | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999887653 211 2 2467899999999999999999999988643 2 2333 36799999
Q ss_pred HHHHhcCchhHHHHHHHhh
Q 045498 188 QGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m 206 (207)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999999875
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00015 Score=54.98 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=72.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-Ch
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKG---LVP----GVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G-CFP-DS 180 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~ 180 (207)
..+..+.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|..++++..+- | -.| ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33556678899999999999887541 111 2557899999999999999999999987643 2 223 33
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 181 TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.+++.|...|...|++++|..++++.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67889999999999999999999875
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.0038 Score=46.07 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=98.5
Q ss_pred HcCCCccHHhHHHHHHHHHh--cC---ChhHHHHHHHHHHhCCCCcc-hhhHHHHHhhHhhh---c-----ChhhHHHHH
Q 045498 33 KKGICLDVFVYSSLINGLCT--FN---RLKEAVELFDKMVAQGITAE-LVTYNPLIHDNWEK---Q-----GRFSAMALL 98 (207)
Q Consensus 33 ~~~~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~---~-----~~~~a~~~~ 98 (207)
....+.+...|...+.+... .+ ...+|..+|++..+.. |+ ...|..+..++... + ........+
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 44566678888888876543 22 3578999999998874 44 33444333333211 1 111111122
Q ss_pred HHHHhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498 99 QTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177 (207)
Q Consensus 99 ~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (207)
+..... ..+.+..++..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|...|++.... .
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~ 340 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--R 340 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 221111 224567788877777777899999999999999985 78778878888899999999999999988876 6
Q ss_pred CChhhHHH
Q 045498 178 PDSTSFNT 185 (207)
Q Consensus 178 p~~~~~~~ 185 (207)
|...+|..
T Consensus 341 P~~~t~~~ 348 (372)
T 3ly7_A 341 PGANTLYW 348 (372)
T ss_dssp CSHHHHHH
T ss_pred CCcChHHH
Confidence 77777653
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00068 Score=39.68 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=24.1
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 120 LCRVGRWEEARKKLDQLSEKGLVPGVV-TYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+.+.|++++|.+.+++..+.... +.. .+..+..+|...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444444444444444443211 233 4444444444445555555554444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.59 E-value=0.00034 Score=53.09 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=67.0
Q ss_pred hhcChhhHHHHHHHHHhC---CCC---c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHH
Q 045498 87 EKQGRFSAMALLQTLERD---KYE---L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-PG-VVTYNILI 152 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~li 152 (207)
..|++++|..++++..+. -+. | ...+++.+..+|...|++++|..++++..+. |.. |+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788999998876542 112 2 3578999999999999999999999887643 321 22 45689999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045498 153 NGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~ 173 (207)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.58 E-value=0.0029 Score=51.54 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=63.0
Q ss_pred hhhhhHHHHHH---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498 23 CKIREIDSAIK---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 23 ~~~g~~~~a~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
...+++++|.+ ..++ +......++..+.+.|.++.|+++.+.- . .-.......|++++|.++.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHhcCC-chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHHHHHHHH
Confidence 34567777665 2223 1223377777777788888877665311 1 11334566788888888764
Q ss_pred HHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 100 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
.+ .+...|..+...+.+.++++.|.+.|..+..
T Consensus 677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 32 2567888888888888888888888887643
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.00048 Score=52.22 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=70.4
Q ss_pred HhhHhhhcChhhHHHHHHHHHhCC---CC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-C-Chhh
Q 045498 82 IHDNWEKQGRFSAMALLQTLERDK---YE----LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-P-GVVT 147 (207)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~---~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~ 147 (207)
+..+...|++++|..++++..+.. +. ....+++.+...|...|++++|..++++.... |.. | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998876542 11 23568899999999999999999999877543 321 2 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988764
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.46 E-value=0.011 Score=45.75 Aligned_cols=138 Identities=9% Similarity=-0.136 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045498 57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136 (207)
Q Consensus 57 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 136 (207)
+.+..+|++..... +.+...|-..+..+.+.|+.+.|..++++.... +.+...+.. |+...+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence 34667888887653 556778888888888999999999999998887 333333322 2222111121 2222
Q ss_pred HhC---------CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCchhHHHHHH
Q 045498 137 SEK---------GL---VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV-KNETDRASSFL 203 (207)
Q Consensus 137 ~~~---------g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~ 203 (207)
.+. +. ......|...+....+.+.++.|..+|+.. .. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 211 00 112345667777777788899999999999 32 12244444432222222 33689999998
Q ss_pred Hhh
Q 045498 204 KKN 206 (207)
Q Consensus 204 ~~m 206 (207)
+..
T Consensus 344 e~a 346 (493)
T 2uy1_A 344 SSG 346 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0084 Score=44.25 Aligned_cols=133 Identities=10% Similarity=-0.049 Sum_probs=89.7
Q ss_pred CCcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh----cCC----CHHHHHHHHHHHH
Q 045498 71 ITAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNIEVYSLVIDGLC----RVG----RWEEARKKLDQLS 137 (207)
Q Consensus 71 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~~----~~~~a~~~~~~~~ 137 (207)
.+.+...|...+.+.... ....+|..+|++..+.... ....+..+.-+|. ..+ ........++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 466778888888766542 3346799999998887532 3344443333332 111 1111111222211
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 138 EK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 138 ~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
.. .-..+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 124467788888777778899999999999999985 78888888889999999999999999875
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.28 E-value=0.016 Score=47.15 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=87.6
Q ss_pred hHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhH
Q 045498 15 YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA 94 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 94 (207)
...++..+.+.|.++.|+...-.|.. -.....+.|++++|.++.+.+ .+...|..+-..+.+.++++.|
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~~-----~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A 700 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQDQ-----KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLA 700 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHHH-----HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCcch-----heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHH
Confidence 36677777888888888844434322 134456789999999986443 3668999999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+.|.++.. |..+...+...|+.+...++.+.....| -++....+|.+.|++++|.+++.++
T Consensus 701 ~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 701 IEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 999998753 3344444555666666666665555543 2233444455566666666666544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0013 Score=38.34 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=28.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
.+.+.|++++|+..|++..+.. +.+.. .+..+-.++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445555555555555555442 22333 4445555555555555555555555444
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.04 E-value=0.016 Score=33.71 Aligned_cols=65 Identities=12% Similarity=0.015 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 109 NIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555543333 56677777766665433 4555666666666777777777777776665
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.005 Score=39.38 Aligned_cols=64 Identities=16% Similarity=-0.043 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 109 NIEVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+..+...+..++++.+ +.+++..+++...+.. .| +...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334444444444432 12 233333344444444444444444444444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.01 Score=37.95 Aligned_cols=83 Identities=17% Similarity=0.071 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc---ChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ---GRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEAR 130 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~ 130 (207)
...+.+-|.+....+. ++..+.-.+-.++++.+ +.+++..++++..+.+ .| ....+..+--++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666666553 67777777777888877 5668999999988765 23 3455566666779999999999
Q ss_pred HHHHHHHhCC
Q 045498 131 KKLDQLSEKG 140 (207)
Q Consensus 131 ~~~~~~~~~g 140 (207)
+.++.+.+..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998873
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.89 E-value=0.0077 Score=35.79 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498 108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG------LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST 181 (207)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (207)
.+...+..+...+.+.++++.|...++...+.- -.+....+..+..++.+.|+++.|...+++.. ...|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCH
Confidence 456677888889999999999999998776531 12356778889999999999999999988763 4566543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.76 E-value=0.03 Score=32.56 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=40.1
Q ss_pred cchhhHHHHHhhHhhhcC---hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 73 AELVTYNPLIHDNWEKQG---RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
.+...+..+-.++...++ .++|..++++..+... -+......+-..+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555555544333 4667777776666542 25566666666677777777777777777665
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.51 E-value=0.051 Score=32.12 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=56.0
Q ss_pred cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
.+..-+-.+-..+...+++..|...++...+.. -.+...++..+..++.+.|+++.|...+++..+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355566778889999999999999999876531 13467789999999999999999999999998863
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.51 E-value=0.073 Score=33.89 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=56.3
Q ss_pred CccHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCcchh-hHHHHHhhH------hhhcChhhHHHHHHHHHh
Q 045498 37 CLDVFVYSSLINGLCTFNRL------KEAVELFDKMVAQGITAELV-TYNPLIHDN------WEKQGRFSAMALLQTLER 103 (207)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~m~~ 103 (207)
+.|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..-+..+ ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777888 7778888877664 455531 111111111 122555556666655544
Q ss_pred CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 104 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 142 (207)
..-.. ...|-....--.+.|+++.|.+++......+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 32222 334444444445556666666666655555544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.098 Score=34.34 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=89.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
.....+.|+++.|.++.+++ .+...|..|-......|+++-|.+.|..... +..+.--|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44566789999999988766 3678899999999999999999999987552 34555556667887
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
++..++-+.....| -++.....+.-.|+++++.++|.+... .|- -.......|..+.|.++.++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHH
Confidence 77777766665554 356666677788999999999865432 121 11112235566667666654
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.098 Score=34.32 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=89.4
Q ss_pred HhhhhhhhHHHHHHcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHH
Q 045498 20 NGMCKIREIDSAIKKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98 (207)
Q Consensus 20 ~~~~~~g~~~~a~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 98 (207)
......|+++.|.+.. .--+...|..|-....+.|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 3445678888887211 114678899999999999999999999987743 556666777888888877666
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 99 QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 99 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
+.-...| -++....++.-.|+++++.+++.+..+ -| .-+......|..+.|.++.+.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 6555554 246666677788999999999865332 12 11112233667788888877653
No 228
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.077 Score=43.11 Aligned_cols=128 Identities=12% Similarity=0.058 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC-hhhHHHHHHHHHhC------CCCc-cH---
Q 045498 43 YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG-RFSAMALLQTLERD------KYEL-NI--- 110 (207)
Q Consensus 43 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~--- 110 (207)
...++..+...++ .+.|..+|+++.+.....+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 58899999999887422222222333333333322 22345555443321 1111 11
Q ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 111 -------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 111 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
...+.=.+-+...|+++.|+++-++....-+ -+..+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222223456678999999999999888732 25789999999999999999999999876
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.37 E-value=0.076 Score=32.72 Aligned_cols=66 Identities=15% Similarity=-0.024 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 108 LNIEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
++..+-..+..++.+..+... +..+++.+.+.+ .| .......|.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444455555554433 555555554442 11 2333344445555666666666666665554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.1 Score=33.28 Aligned_cols=111 Identities=9% Similarity=0.018 Sum_probs=74.9
Q ss_pred chhhHHHHHhhHhhhcCh------hhHHHHHHHHHhCCCCccHH----------HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498 74 ELVTYNPLIHDNWEKQGR------FSAMALLQTLERDKYELNIE----------VYSLVIDGLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~ 137 (207)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. ...++. ...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Confidence 455666666666666766 6777777776654 444321 112222 33489999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 138 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
+.+-+. ...|......-.+.|++..|.+++......+..|. ..+...++-+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL 138 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence 764343 66777777778899999999999999998765544 4455555543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.23 E-value=0.082 Score=37.70 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHH
Q 045498 92 FSAMALLQTLERDKYE-LNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEA 164 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a 164 (207)
..|...+++..+.... .+...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......+++. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4577777776665422 135678888888888 499999999999999985433478888888999885 999999
Q ss_pred HHHHHHHHHcCCC--CChhhHHH
Q 045498 165 DKLLVQMKEKGCF--PDSTSFNT 185 (207)
Q Consensus 165 ~~~~~~m~~~~~~--p~~~~~~~ 185 (207)
...+++....... |+....+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999988655 55444433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.17 E-value=0.088 Score=32.45 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=62.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh---HHHHHHHHHhCCCC-ccHHHHHHHHHHHhc
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---AMALLQTLERDKYE-LNIEVYSLVIDGLCR 122 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 122 (207)
+..-........+.+-|.+....|. ++..+--.+-+++.+..+... ++.+++.+.+.+.+ -...-...+.-++.|
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333344445566666666655553 666666666777887776665 88888888776521 133445566678899
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 045498 123 VGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g 140 (207)
.|++++|.+.++.+.+..
T Consensus 87 lg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999999998873
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.14 Score=41.68 Aligned_cols=125 Identities=17% Similarity=0.030 Sum_probs=78.9
Q ss_pred HHHHhhHhhhcC-hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhC------CCCC-Ch----
Q 045498 79 NPLIHDNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEK------GLVP-GV---- 145 (207)
Q Consensus 79 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~~---- 145 (207)
..+++.+...++ .+.|..+++++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 57799999999887533333333344444444432 22344444433321 1111 11
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 146 ------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 146 ------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
...+.-...+...|+++.|+.+-++.... .|+ -.+|..|..+|...|+++.|+-.++-
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 11222245566789999999999998876 454 68999999999999999999987764
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.096 Score=39.12 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 045498 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFNT 185 (207)
Q Consensus 113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 185 (207)
...++..+...|+++++...++.+.... +.+...+..+|.++.+.|+..+|...|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456677788999999999888887764 34788999999999999999999999998764 499998875443
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.55 E-value=0.34 Score=34.63 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhCCCC-cchhhHHHHHhhHhh-----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC-CCHHH
Q 045498 56 LKEAVELFDKMVAQGIT-AELVTYNPLIHDNWE-----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV-GRWEE 128 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~ 128 (207)
...|...+++..+.... .+...|..+...|.. -|+.++|.+.|++..+.+..-+..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777777765311 135678888888888 499999999999998875432477788888889885 99999
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHH
Q 045498 129 ARKKLDQLSEKGLV--PGVVTYNIL 151 (207)
Q Consensus 129 a~~~~~~~~~~g~~--~~~~~~~~l 151 (207)
+.+.+++....... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999998766 665544443
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.52 E-value=0.17 Score=29.71 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
+.-++.+-+..+...++.|++.+..+.+++|-|.+++..|.++++-.+.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666666667667777777777777777777776666554
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.50 E-value=0.1 Score=38.99 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=52.9
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYNIL 151 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 151 (207)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556677777888888888777776654 44777888888888888888888888877643 4777776654433
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.21 E-value=0.3 Score=30.64 Aligned_cols=141 Identities=10% Similarity=0.055 Sum_probs=71.6
Q ss_pred HHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498 43 YSSLING--LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120 (207)
Q Consensus 43 ~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 120 (207)
...|+.+ +.-.|..++..++..+..++. +..-||=.|--....-+-+-..++++..-+. .| .
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------i 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------L 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------G
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------c
Confidence 3344443 334577777777777766543 2333333333333333333444444433221 11 1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
..+|++..+...+-.+- .+....+..+......|+-++..+++.++.. +.+|++.....+..+|.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 23444444444443322 1444555666666666666666666666433 23556666666666666666666666
Q ss_pred HHHHh
Q 045498 201 SFLKK 205 (207)
Q Consensus 201 ~~~~~ 205 (207)
+++++
T Consensus 146 eLl~~ 150 (172)
T 1wy6_A 146 TLLIE 150 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.50 E-value=1.6 Score=37.52 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----------------------
Q 045498 18 RINGMCKIREIDSAI--KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA---------------------- 73 (207)
Q Consensus 18 ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---------------------- 73 (207)
++..+.+.+..+.+. ..-.+.++..--.+-.++...|++++|.+.|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccc
Confidence 444455555555554 223344555555667788899999999999976521 1100
Q ss_pred -chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498 74 -ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 74 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
-..-|.-++..+-+.+.++.+.++-....+...+ ++ ...|..+.+++...|++++|...+-.+..... -....
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cL 974 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCL 974 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHH
Confidence 1123566777777888888877776655443211 11 23678889999999999999998888876543 34567
Q ss_pred HHHHHHHHhcCCHHH------------HHHHHHHHHH-c-CCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 149 NILINGLCKKGMIME------------ADKLLVQMKE-K-GCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 149 ~~li~~~~~~~~~~~------------a~~~~~~m~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
..|+...|..|..+. +.+++...-+ . .....+.-|..|-..+...|++.+|..++
T Consensus 975 r~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 777777776655443 4444432221 1 11112233555666667888887776654
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.47 E-value=0.41 Score=29.79 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 152 (207)
.-+..+-++.+...++.|++.+..+.+++|-|.+++..|.++++-.+.+- .+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 33455556666666666677777777777777777777777776665542 22333454444
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.84 E-value=9e-06 Score=61.61 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=36.4
Q ss_pred hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
+|..+..+..+.+++.+|+++-++. |+..|..++.++.+.|++++-.+.+...++. .-++.+=+.|+-+|++.++..
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHH
Confidence 3444445555555555555333322 3444555555555555555555555433322 223334445555555555544
Q ss_pred h
Q 045498 93 S 93 (207)
Q Consensus 93 ~ 93 (207)
+
T Consensus 134 e 134 (624)
T 3lvg_A 134 E 134 (624)
T ss_dssp T
T ss_pred H
Confidence 3
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.51 E-value=0.64 Score=27.37 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=59.2
Q ss_pred HHHHHHHHH-hcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 112 VYSLVIDGL-CRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 112 ~~~~li~~~-~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
-|.+--..| .+.. +.-++.+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 344433333 3444 56677888888888899999999999999999999999999999998866 34445668777764
Q ss_pred H
Q 045498 190 F 190 (207)
Q Consensus 190 ~ 190 (207)
.
T Consensus 89 l 89 (109)
T 1v54_E 89 L 89 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.19 E-value=1.3 Score=27.60 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=55.7
Q ss_pred HhcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498 120 LCRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190 (207)
Q Consensus 120 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 190 (207)
|.+.. |.-+..+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-.
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 33444 45567777788888889999999999999999999999999999998866 445566788777653
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.84 E-value=1.4 Score=27.30 Aligned_cols=68 Identities=16% Similarity=0.019 Sum_probs=36.1
Q ss_pred CccHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 107 ELNIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.|+..+--...-++.+..+ ..++..+++.+.+.+..-.....--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444444444445554443 3345556655555432223444555556666666666666666666654
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.81 E-value=1.3 Score=28.67 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=53.8
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCC-CCcc-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCChhh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDK-YELN-------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVT 147 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~ 147 (207)
+-.-++.+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..... +.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666666666666665543321 1122 1244455566666666666666666643221 0001101
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
...+ . ....... ......+...-.-+..||.+.+++++|+.+++.
T Consensus 103 ~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1100 0 0000000 001112233444478899999999999998764
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.74 E-value=1.5 Score=27.24 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=47.2
Q ss_pred CCcchhhHHHHHhhHhhhcCh---hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 71 ITAELVTYNPLIHDNWEKQGR---FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 71 ~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
-.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+.-+.-++.|.|+++.|.+..+.+.+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345555555555566666544 4577888887776532234555666678888999999999998888763
No 247
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.06 E-value=1.9 Score=27.16 Aligned_cols=120 Identities=17% Similarity=0.059 Sum_probs=68.9
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
+..-||-+|.-....-+-+-..++++..-+. .|. ...++...+...+-.+- .+...++..++
T Consensus 38 ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C~~~~n-----~~se~vd~ALd 99 (172)
T 1wy6_A 38 TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVECGVINN-----TLNEHVNKALD 99 (172)
T ss_dssp CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHHHHHTT-----CCCHHHHHHHH
T ss_pred CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHHHHHhc-----chHHHHHHHHH
Confidence 4445666666666667777777777666432 121 11223323322222111 13344566667
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF 177 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (207)
.+...|+-+.-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.+.=+.|++
T Consensus 100 ~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777777777777776533 23456666777777777777777777777777666653
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.03 E-value=7.1 Score=33.70 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=94.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-------------------
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY------------------- 106 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------- 106 (207)
++..+.+.++.+.+.++.... +.++..--.+-.++...|++++|.+.|.+... |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444555566666555543322 22333334555677888999999999976421 11
Q ss_pred ----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 107 ----ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 107 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
..-..=|..++..|.+.+.++.+.++-+...+....-+ ...|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00112356777888888888888888776665422111 12577888899999999999998887766533
Q ss_pred ChhhHHHHHHHHHhcCchhHHH
Q 045498 179 DSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
-...+..|+..++..|..+.-.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhh
Confidence 3456777888788777766543
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.88 E-value=5.1 Score=30.28 Aligned_cols=97 Identities=16% Similarity=-0.034 Sum_probs=70.1
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChh----
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVV---- 146 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~---- 146 (207)
.+...+...+.+.|+.+.|.+.+.++.... ...-...+-..++.+...+++..+...+.+.... +-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 467888999999999999999999987653 2334677888899999999999999998877543 3223322
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.|..+ .+...+++..|...|-+....
T Consensus 212 ~~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 12222 234578899888888776543
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.79 E-value=1.9 Score=25.26 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=62.7
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
.....++|..|-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-+|.. .+.|.-+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34567888888888887763 33333444677889999999988766443 688888877765 57888888888
Q ss_pred HHHHHHHcCCCCChhhHH
Q 045498 167 LLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~ 184 (207)
-+.++...| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887877765 34444443
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=5.3 Score=30.22 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=69.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCccHHHH--
Q 045498 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVY-- 113 (207)
Q Consensus 41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~-- 113 (207)
.+...+...|.+.|++++|.+.|.++...-. ..-...+-..+..+...+++..+...+.+.... +..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677788999999999999999999986432 233456777889999999999999999886533 323332211
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..-...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122345678899998888766543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.53 E-value=2.1 Score=27.71 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcch-------hhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAEL-------VTYNPLIHDNWEKQGRFSAMALLQTL 101 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m 101 (207)
.+-.-+..+...+.++.|+-+.+.+... +..|+. .++..+-.++...+++..|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444556666677777777666665432 111221 13445556667777777777777764
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.44 E-value=2.1 Score=25.16 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=62.2
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
.....++|..|-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-+|.. .+.|.-+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34567888888888887763 33333444677889999999988876544 688888877765 46788888888
Q ss_pred HHHHHHHcCCCCChhhHH
Q 045498 167 LLVQMKEKGCFPDSTSFN 184 (207)
Q Consensus 167 ~~~~m~~~~~~p~~~~~~ 184 (207)
-+.++...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887776664 34444443
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.34 E-value=2.8 Score=26.41 Aligned_cols=67 Identities=16% Similarity=0.020 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 108 LNIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 108 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
|+..+--....++.+..+ ..++..+++.+.+.+..-.......|.-++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444433 2234444444444322212333344445555555555555555555543
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.56 E-value=3.4 Score=29.09 Aligned_cols=116 Identities=10% Similarity=-0.003 Sum_probs=75.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCC
Q 045498 48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~ 125 (207)
....+.|++++++.....-.+.. |-|...=..++..+|-.|++++|..-++...+.... |....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567889999998888887775 567777778889999999999999888887765422 233455555544
Q ss_pred HHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 045498 126 WEEARKKLDQLSEKGLVP-----GVVTYNILINGLC--KKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 174 (207)
+..=.+....+-.| ...-...++.+.. ..|+.++|..+-....+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233332222 2233445555544 458999999888887654
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.97 E-value=5.4 Score=28.10 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=70.4
Q ss_pred hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhc
Q 045498 83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----VTYNILINGLCKK 158 (207)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~ 158 (207)
....+.|+.++++.....-.+.. +-|...-..++.-+|-.|+|++|.+-++...+. .|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 45667889999998888877775 447778888899999999999999988888776 3332 233333332
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHH--hcCchhHHHHHHHh
Q 045498 159 GMIMEADKLLVQMKEKGCFP-----DSTSFNTVIQGFL--VKNETDRASSFLKK 205 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 205 (207)
+..-.+....+-.| ...-...|+++.. ..|+.++|.++-.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~ 125 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 125 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 22222333332222 2334555666554 45888888776554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.14 E-value=4 Score=25.68 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred CcchhhHHHHHhhHhhhcChh---hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498 72 TAELVTYNPLIHDNWEKQGRF---SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG 140 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 140 (207)
.|+..+--..-+++.+..+.+ ++..+++.+.+.+..-...-..-+.-++.|.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666555666777766544 577788887775433234445566678889999999999999998873
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.03 E-value=9.7 Score=28.98 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=110.8
Q ss_pred hhHHHHH------------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh----hhc
Q 045498 26 REIDSAI------------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW----EKQ 89 (207)
Q Consensus 26 g~~~~a~------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~ 89 (207)
|+++.|+ ......+......++..|.+.++|+...+.+..+.+..-... ..-..++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCC
Confidence 6677776 233445677788899999999999999888877654322222 22233333322 223
Q ss_pred ChhhH--HHHHHHHHh--CC-CCc---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHH
Q 045498 90 GRFSA--MALLQTLER--DK-YEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--GLVPG---VVTYNILINGLC 156 (207)
Q Consensus 90 ~~~~a--~~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~ 156 (207)
..+.. ..+.+.+.. .| +-. .......+...+...|++.+|.+++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22221 111111110 01 111 2234456778899999999999999987643 22211 345677788999
Q ss_pred hcCCHHHHHHHHHHHHH----cCCCCCh--hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 157 KKGMIMEADKLLVQMKE----KGCFPDS--TSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 157 ~~~~~~~a~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+++.+|..++..... ....|+. .-+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999988753 2222222 34666777778888888888877653
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.39 E-value=11 Score=28.23 Aligned_cols=132 Identities=12% Similarity=-0.040 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc---chhhHHHHHhhHhhhc-ChhhHHHHHHHH----HhCC-CCccHH
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQ-GITA---ELVTYNPLIHDNWEKQ-GRFSAMALLQTL----ERDK-YELNIE 111 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~m----~~~~-~~~~~~ 111 (207)
....|...|.+.|+.++..+++.....- +..| .......++..+.... ..+.-.++..+. .... .-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666555321 0011 1123444555554432 222222222222 2111 000111
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-----VVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
.=.-+...|...|++.+|.+++..+.+.=-+.| ...+-.-+..|...+++.++...+.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 122456666677777777666666654311111 22344445666666777777766666543
No 260
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.85 E-value=5.6 Score=27.91 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=14.6
Q ss_pred hhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChh
Q 045498 22 MCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLK 57 (207)
Q Consensus 22 ~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~ 57 (207)
.+..|+.+-+. +.|..++...-.+.+...+..|+.+
T Consensus 38 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 76 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK 76 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 33445554444 4444333222222333344455544
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.81 E-value=12 Score=27.37 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHH
Q 045498 146 VTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 146 ~~~~~li~~~~~~~~~~~a~~~ 167 (207)
.....+...|.+.+++.+|..-
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHH
Confidence 3334444455555554444433
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.80 E-value=13 Score=27.85 Aligned_cols=160 Identities=13% Similarity=-0.038 Sum_probs=96.8
Q ss_pred hhhHHHHHhhhhhhhHHHHH-----------HcCCCccHHhHHHHHHHHHhcC-ChhHHHHHHHH----HHhCCCC-cch
Q 045498 13 HVYGIRINGMCKIREIDSAI-----------KKGICLDVFVYSSLINGLCTFN-RLKEAVELFDK----MVAQGIT-AEL 75 (207)
Q Consensus 13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~----m~~~~~~-~~~ 75 (207)
.....+...|.+.|+.++.. .-.-.........+++.+.... ..+.-.++..+ ..+..-. ...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889888876 1111223455777888887643 33333344333 3332110 011
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCChhhH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--GLVPGVVTY 148 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~ 148 (207)
..=.-+...|...|++.+|..++.++.+.--. .-..++-.-+..|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 11225788999999999999998887653111 22456777788899999999999998876543 122333222
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHHHHH
Q 045498 149 NIL----INGLC-KKGMIMEADKLLVQMK 172 (207)
Q Consensus 149 ~~l----i~~~~-~~~~~~~a~~~~~~m~ 172 (207)
..+ -..+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 111 12334 6788988888776653
No 263
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=80.96 E-value=8.2 Score=24.34 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 65 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 355566655532 233444444555566777777777766655666666666666666554
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.95 E-value=16 Score=27.75 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred cccchhhhHHHHHhhhhhhhHHHHH--------HcCCCccHHhHHHHHHHH----HhcCChhHH--HHHHHHHHh--CC-
Q 045498 8 FKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGL----CTFNRLKEA--VELFDKMVA--QG- 70 (207)
Q Consensus 8 ~~p~~~~~~~ll~~~~~~g~~~~a~--------~~~~~~~~~~~~~ll~~~----~~~~~~~~a--~~~~~~m~~--~~- 70 (207)
...+......++..|...|+++... .+|..+... ..++..+ ......+.. ..+.+.+.. .|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3445667888899999999998875 445444332 2333332 223333221 122221111 01
Q ss_pred CCc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhC--CCCc---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----
Q 045498 71 ITA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSE---- 138 (207)
Q Consensus 71 ~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 138 (207)
+-. .......|...+-..|++.+|..++..+... +... -...+...++.|...+++..|..++.....
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 101 1122355778888999999999999987533 2211 145677788899999999999999887642
Q ss_pred CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 139 KGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 139 ~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
....|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222222 2345666777778888888877777664
No 265
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=80.74 E-value=7.8 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 66 MVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 66 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
+++.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44555555432 223334444444 555677777777666555565555555555555543
No 266
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=80.62 E-value=12 Score=25.82 Aligned_cols=90 Identities=19% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCc----chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQ--GITA----ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 118 (207)
--++.+....++++|..++++..+. +.++ +.......++.-.....-.-+..+.+++.. .+........+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567788899999999999887542 2222 112233344444444455556666666643 445666777788
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 045498 119 GLCRVGRWEEARKKLDQLS 137 (207)
Q Consensus 119 ~~~~~~~~~~a~~~~~~~~ 137 (207)
.+.+.|+.++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 9999999999999876554
No 267
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=80.60 E-value=8.3 Score=24.14 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=34.8
Q ss_pred HHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 65 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 355566655532 233344444455566677777777766655566666666666665554
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.49 E-value=6.8 Score=24.91 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=44.0
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCC
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLV 142 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~ 142 (207)
..+.++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888889999999999888633222 34455566666666432 45677778777776654
No 269
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=80.41 E-value=8.6 Score=24.24 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 135 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344455553332 223333344444445556666666555444455555555555555553
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.41 E-value=7.9 Score=23.78 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=43.1
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCC
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLV 142 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~ 142 (207)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3566788888888888888888887633222 33455566666666542 45677777777776654
No 271
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=80.12 E-value=1.9 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhH-hhhcC
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDN-WEKQG 90 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 90 (207)
.++|.+.|.+|++..-.++..+|...++.+ +...+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 467888888887654455568888888877 55443
No 272
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=79.29 E-value=8.2 Score=24.19 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 65 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
.+++.|++++.. =..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344556555532 222333344444 55677777777666655566665555666655553
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=79.28 E-value=13 Score=25.58 Aligned_cols=91 Identities=15% Similarity=0.041 Sum_probs=53.9
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhC--CCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERD--KYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 577888888888888888876543 1221 111222233333333333445555555533 3456666777788
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 045498 155 LCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~ 174 (207)
+.+.|+.++|.++|=+.+..
T Consensus 101 L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHH
Confidence 88888888888888766543
No 274
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=79.22 E-value=9.5 Score=24.04 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 64 DKMVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 64 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
+.+.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455667665543 233444444555 5667888888887776666777777777777766643
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.30 E-value=17 Score=26.29 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 97 LLQTLERDKYELNIEVYSLVIDGLCRVGR-----WEEARKKLDQLSEKGL--VPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 97 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
+++-..+.+.+++......++..+..... .+-..+...+..+.|- .-++.....+...|.+.|++.+|..-|
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 44455556666666666666666554321 1222233333333321 224555666667777777776666644
No 276
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=77.27 E-value=11 Score=23.59 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=27.3
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 136 ~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 444555543322 22333333334444455555555555444455555555555555543
No 277
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.53 E-value=7.5 Score=21.38 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 136 LSEKGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 136 ~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555544433 23334443332 334455566665555444455555555555555553
No 278
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=76.18 E-value=9.9 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344455555444443344444444444444444
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.03 E-value=13 Score=23.71 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 128 EARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 128 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
++.++|..|.+.|+--. ..-|......+...|++.+|..+|+.-.+.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37888888888877533 455677778888889999999999888888777644
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.69 E-value=21 Score=26.09 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=14.5
Q ss_pred hHHHHHhhHhhhcChhhHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
+|.++..-|.+.+++++|.+++-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 45555666666677777666554
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.61 E-value=15 Score=24.47 Aligned_cols=144 Identities=10% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhh--HHHHHhhHhhhcChhhHHHHHHHHHhCCCCc---cHHHHHHHHHHHh
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVT--YNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEVYSLVIDGLC 121 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~ 121 (207)
+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.....+..+ +....+. +...+
T Consensus 50 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~ 124 (241)
T 1k1a_A 50 LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAV 124 (241)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHH
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHH
Confidence 34444556554 3444445554443221 1233444555666655555554432111111 1111222 22233
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCch
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVT---YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS--FNTVIQGFLVKNET 196 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~ 196 (207)
+.|+.+ +++.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.
T Consensus 125 ~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 196 (241)
T 1k1a_A 125 NTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLL 196 (241)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred HcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 445543 4445555555544322 22334444566666544 34444565554321 12233444566666
Q ss_pred hHHHHHH
Q 045498 197 DRASSFL 203 (207)
Q Consensus 197 ~~a~~~~ 203 (207)
+-+..++
T Consensus 197 ~~v~~Ll 203 (241)
T 1k1a_A 197 PLVRTLV 203 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 282
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=74.86 E-value=8.7 Score=24.06 Aligned_cols=58 Identities=7% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 135 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555544332 22223333333 3455566666555544445555555555555554
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.71 E-value=17 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.4
Q ss_pred hcCCCHHHHHHHHH
Q 045498 121 CRVGRWEEARKKLD 134 (207)
Q Consensus 121 ~~~~~~~~a~~~~~ 134 (207)
+..|+.+-+.-+++
T Consensus 169 ~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 169 IKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 44455544444443
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=74.05 E-value=15 Score=23.56 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=44.3
Q ss_pred hHHHHHHHH-HHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC--CCCccHHHHHHHHHHHhcCCCH
Q 045498 57 KEAVELFDK-MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 57 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~ 126 (207)
+.+++-+.+ +++.|++++. .=..++..+...+..-.|.++++.+.+. +...+..|..--+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444444 4456766654 3344556666666777888888888776 6666777777777777777653
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.90 E-value=17 Score=24.32 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 126 WEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
..++.++|..|...|+--. ..-|......+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555544322 3334444555555555555555555555554444
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.84 E-value=23 Score=25.61 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=66.3
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH----HHHHHHhCCCCCChhhHHHH
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK----KLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~~~~~g~~~~~~~~~~l 151 (207)
..|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++...+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 356666777777788888877765422 22334455444433 35555566777777777777
Q ss_pred HHHHHhcCCHH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 152 INGLCKKGMIM-EADKLLVQMK----EKG--CFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 152 i~~~~~~~~~~-~a~~~~~~m~----~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
+..+.....-+ .-.++++.+. +.| ...++.....+...|.+.|++.+|...|
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 76665432111 1233333333 222 2236677777888888888888887755
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.42 E-value=17 Score=23.48 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 129 ARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
..++|..|.+.|+--. ...|......+-..|++.+|..+|+.-.+.+-.|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5566777777766433 444566666667777777777777777777666644
No 288
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=72.13 E-value=12 Score=23.64 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 161 IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3345555555544443344444444444444444
No 289
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.07 E-value=10 Score=20.83 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 66 MVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 66 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444554444322 23333444333 44455566666555544444555555555544443
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=72.06 E-value=15 Score=23.51 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=17.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEK--GLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~~ 159 (207)
+..+...++.-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444444444444443 33333334333333444333
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=70.83 E-value=19 Score=23.40 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=15.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 74 (207)
.+...+..++.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444445555555555555666655444
No 292
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=69.89 E-value=10 Score=23.30 Aligned_cols=144 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc---HHHHHHHHHHHh
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN---IEVYSLVIDGLC 121 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~ 121 (207)
.+...++.|+.+.+..+++. ....+ ..+..-.+.+. . +..|+.+-+..++ +.|..++ ....+. +...+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~-~-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~ 76 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQ-V-MMFGSTAIALELL----KQGASPNVQDTSGTSP-VHDAA 76 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHH-H-SCTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHH-H-HHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHH
Confidence 34455677888888887776 21111 12323333333 3 6667765544444 4454332 122222 33334
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGV---VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
+.|+.+-+ +.+.+.|..++. ...+.| ...+..|+.+-+..+++. ..-. ..|..-.+ .+...+..|+.+-
T Consensus 77 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t-~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 77 RTGFLDTL----KVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE-SDLH-RRDARGLT-PLELALQRGAQDL 148 (156)
T ss_dssp HTTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCC-HHHHHHHSCCHHH
T ss_pred HcCcHHHH----HHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc-cCCC-CcCCCCCC-HHHHHHHcCcHHH
Confidence 55666544 444455554432 223333 344567777766655554 1111 11222222 2333456677665
Q ss_pred HHHHHHh
Q 045498 199 ASSFLKK 205 (207)
Q Consensus 199 a~~~~~~ 205 (207)
+.-+++.
T Consensus 149 v~~Ll~~ 155 (156)
T 1bd8_A 149 VDILQGH 155 (156)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 5555543
No 293
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.00 E-value=15 Score=21.62 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
...++|.-+-+.+...+- ....--+=+..+.+.|++++|..+.+.+ ..||...|.+|.. .+.|.-+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 457888888888888743 2222222346678999999999876643 4789888877754 3666666665554
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.99 E-value=7.2 Score=26.01 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=5.1
Q ss_pred HHHHHhcCChh
Q 045498 47 INGLCTFNRLK 57 (207)
Q Consensus 47 l~~~~~~~~~~ 57 (207)
+...+..|+.+
T Consensus 46 L~~A~~~~~~~ 56 (240)
T 3eu9_A 46 LHWAAINNRID 56 (240)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHhCCHH
Confidence 33444555543
No 295
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=68.70 E-value=13 Score=22.78 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=20.5
Q ss_pred hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
.+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333444455555555555544445555555555555444
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.68 E-value=25 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 127 EEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
++..++|..|...|+--. ..-|......+...|++.+|..+|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466778888888877533 455677778888888999999988888887766644
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.97 E-value=24 Score=23.61 Aligned_cols=73 Identities=11% Similarity=-0.075 Sum_probs=52.3
Q ss_pred CcchhhHHHHHhhHhh--hcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 045498 72 TAELVTYNPLIHDNWE--KQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144 (207)
Q Consensus 72 ~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 144 (207)
.-|+.-....|.-.-. .+...++..+|..|...|+-.. ...|-.....+-..|++++|.++|+.-.+.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455544444432222 3346689999999988876543 45667778888899999999999999998877763
No 298
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=67.71 E-value=11 Score=23.31 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=23.7
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR 125 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 125 (207)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455566666666555555555555555555555443
No 299
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=67.22 E-value=18 Score=24.54 Aligned_cols=57 Identities=12% Similarity=-0.036 Sum_probs=36.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcch-------hhHHHHHhhHhhh---cChhhHHHHHHHHHh
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAEL-------VTYNPLIHDNWEK---QGRFSAMALLQTLER 103 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~m~~ 103 (207)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCc
Confidence 345566788998888888887777654443 3344444 44444 777777777766443
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.83 E-value=7.4 Score=26.73 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=9.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 045498 158 KGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p 178 (207)
.++......+++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 333333344444455554443
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.65 E-value=27 Score=23.65 Aligned_cols=56 Identities=9% Similarity=-0.071 Sum_probs=36.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchh-------hHHHHHhhHh--hhcChhhHHHHHHHHH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELV-------TYNPLIHDNW--EKQGRFSAMALLQTLE 102 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~ 102 (207)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 445567899998888888877766555533 3344544432 5677777777776643
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.98 E-value=17 Score=24.82 Aligned_cols=13 Identities=0% Similarity=-0.130 Sum_probs=5.9
Q ss_pred HHHHHhcCChhHH
Q 045498 47 INGLCTFNRLKEA 59 (207)
Q Consensus 47 l~~~~~~~~~~~a 59 (207)
+...++.|+.+.+
T Consensus 9 L~~A~~~g~~~~v 21 (285)
T 1wdy_A 9 LIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3344455555433
No 303
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=65.63 E-value=46 Score=26.34 Aligned_cols=72 Identities=6% Similarity=-0.039 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS 200 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 200 (207)
+.....++++..+=.--+..-..-++..|.+.|-.+.|.++++.+-.+-+. +...+ .-+..|+++|+++.+.
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 334444444443322225667788999999999999999999998876433 44455 5567889999987653
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=65.10 E-value=22 Score=22.84 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=67.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhh--HHHHHhhHhhhcChhhHHHHHHHHHhCCCCc---cHHHHHHHHHHHh
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVT--YNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEVYSLVIDGLC 121 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~ 121 (207)
+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++. .+..+ +..-.+ .+...+
T Consensus 43 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~ 114 (201)
T 3hra_A 43 LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAA 114 (201)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHH
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCc-HHHHHH
Confidence 33344566654 4444455555444321 12334455566776665555533 22111 111111 233345
Q ss_pred cCCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCchhH
Q 045498 122 RVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN--TVIQGFLVKNETDR 198 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 198 (207)
+.|+.+-+..+++.- .... ..+..-.+.+..+.........-.++.+.+.+.|..++..... +.+...++.|+.+-
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 567766555554432 1111 1233344455554443333444566777777777766543211 23334455566554
Q ss_pred HHHH
Q 045498 199 ASSF 202 (207)
Q Consensus 199 a~~~ 202 (207)
+.-+
T Consensus 194 ~~~L 197 (201)
T 3hra_A 194 SKIL 197 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 305
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=64.68 E-value=70 Score=28.38 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCC---------------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498 112 VYSLVIDGLCRVGR---------------WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 112 ~~~~li~~~~~~~~---------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 176 (207)
.-+.|+.++++.|. .+...+.|.++.+.=-.-|.......+....+.+++..|.+++..+.+.
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~-- 1313 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE-- 1313 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 45677888777432 3455566666665411123334444444455789999999999999987
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498 177 FPDSTSFNTVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 206 (207)
+|+...|..++..+...| |+....+.+++
T Consensus 1314 k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1314 KRTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp TCCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 478888988888776665 55555555543
No 306
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=62.65 E-value=20 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666555555555555444
No 307
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=62.46 E-value=15 Score=22.81 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=57.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhh--HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH--HHHHHHHHh
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVT--YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGLC 121 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 121 (207)
.+...++.|+.+.+..+++. .+..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVV----EYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHH----HHHHhcCCCCCccCCCCCCHHHHHH
Confidence 34445567887766666543 222222111 12344555666775544 44444554443211 112333345
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
+.|+.+- ++.+.+.|..++.. -.+. +...+..|+.+-+ +.+.+.|..|+.
T Consensus 84 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~ga~~~~ 136 (165)
T 3twr_A 84 SYGHYEV----AELLVKHGAVVNVADLWKFTP-LHEAAAKGKYEIC----KLLLQHGADPTK 136 (165)
T ss_dssp HTTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCTTC
T ss_pred HcCcHHH----HHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCcc
Confidence 5667654 44555566655433 2333 4444566776644 444455655543
No 308
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=62.45 E-value=17 Score=22.19 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh
Q 045498 45 SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 91 (207)
.++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666777888999999998887666777766666777766654
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.38 E-value=38 Score=25.01 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTSFNTVIQ 188 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 188 (207)
.....++.=|...++.++|.+.++++...... ......++..+.-+.++ .+.+.+++..+.+.|+-+.......+.+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34678888999999999999999998753221 23445555556555433 4568888888888776555444433333
Q ss_pred H
Q 045498 189 G 189 (207)
Q Consensus 189 ~ 189 (207)
.
T Consensus 297 v 297 (358)
T 3eiq_C 297 I 297 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 310
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.17 E-value=16 Score=24.35 Aligned_cols=150 Identities=11% Similarity=-0.049 Sum_probs=81.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhh--HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH--HHHHHHHHHh
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVT--YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--VYSLVIDGLC 121 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 121 (207)
.+...++.|+.+-+..+++.+.+.+..++... -.+.+...+..|+.+- ++.+.+.|..++.. .-.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45556678999988888888777766554321 2234555666777654 44445566554321 1123344446
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCc
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS---FNTVIQGFLVKNE 195 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~ 195 (207)
+.|+.+-+..+++.....++.++ ....+.+. ..+..|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 67787766666655442222222 23334443 344566654 4445555665554322 2334455567777
Q ss_pred hhHHHHHHH
Q 045498 196 TDRASSFLK 204 (207)
Q Consensus 196 ~~~a~~~~~ 204 (207)
.+-+..+++
T Consensus 163 ~~~v~~Ll~ 171 (241)
T 1k1a_A 163 LSMVQLLLQ 171 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=61.51 E-value=12 Score=25.51 Aligned_cols=119 Identities=15% Similarity=0.031 Sum_probs=66.0
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHH-------HHHHHHHHHh--cCCCHHHHHHHHHHHHhCC---------CC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIE-------VYSLVIDGLC--RVGRWEEARKKLDQLSEKG---------LV 142 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~~~~~g---------~~ 142 (207)
.+...++.|+.+.+..+++.+.+.+..++.. -.+.+..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 4456677899998888888777766555422 2344444432 6788887777777654321 11
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCchhHHHHHHH
Q 045498 143 -PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS----------------FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 143 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.|....+.|. ..+..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t~L~-~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTALH-IAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCHHH-HHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCHHH-HHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1112233343 3456677664444 444565554432 2233444456677666665554
No 312
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=61.09 E-value=3.6 Score=32.12 Aligned_cols=145 Identities=9% Similarity=0.018 Sum_probs=97.4
Q ss_pred hHHHHHhhhhhhhHHHHHHcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498 15 YGIRINGMCKIREIDSAIKKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 15 ~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 93 (207)
|..|...+.+.|++..|.+..- ..|+.||--+-.+|...+++.-|...--.+.-. ..-...+++.|-..|.+++
T Consensus 173 ~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEE 247 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHH
Confidence 4445555666666666663333 446789999999999999999887765555432 1235568889999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHhcCCHHHHHH
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLV------PGVVTYNILINGLCKKGMIMEADK 166 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~------~~~~~~~~li~~~~~~~~~~~a~~ 166 (207)
.+.+++.-.... .....+|+.|.-.|+|- ++++..+-++..-+. +++ -....|..++-.|++-.+++.|..
T Consensus 248 LIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 248 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp STTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999998876432 45778899888888877 445544444332221 111 134457788888887777776543
No 313
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=60.86 E-value=15 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498 44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF 92 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 92 (207)
..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4566666677778889999999988876777777666677777766543
No 314
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=60.64 E-value=17 Score=22.59 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHhhhhhhhHHHHH----HcCCCccHHhH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhh--HHHHHhhHhhhcC
Q 045498 19 INGMCKIREIDSAI----KKGICLDVFVY--SSLINGLCTFNRLKEAVELFDKMVAQGITAELVT--YNPLIHDNWEKQG 90 (207)
Q Consensus 19 l~~~~~~g~~~~a~----~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~ 90 (207)
+...++.|+.+... ..+..++.... .+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 87 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGH 87 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence 44455667777666 22222222111 13344445666654 4444455555443321 1233444555666
Q ss_pred hhhHHHHHHHHHhCCCCccHHH--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 045498 91 RFSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 144 (207)
.+- .+.+.+.|..++... -.+.+...++.|+.+- ++.+.+.|..++
T Consensus 88 ~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 135 (165)
T 3twr_A 88 YEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI----CKLLLQHGADPT 135 (165)
T ss_dssp HHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 554 344445555443211 1123334455666554 444445565554
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.59 E-value=31 Score=22.19 Aligned_cols=50 Identities=2% Similarity=-0.158 Sum_probs=26.4
Q ss_pred cChhhHHHHHHHHHhCCCCc--cHHHHHHHHH-H-----HhcCCCHHHHHHHHHHHHh
Q 045498 89 QGRFSAMALLQTLERDKYEL--NIEVYSLVID-G-----LCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 138 (207)
|++-++.++++..-.....+ ....|..+|. . ..+.|++..|..++++...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666655443333 3445555555 1 2345666666666655543
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.45 E-value=31 Score=22.22 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh
Q 045498 92 FSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 145 (207)
+....+|..|...|+-.. ...|-.....+-..|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 457788999988876544 455667777888899999999999999988777643
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.21 E-value=27 Score=23.08 Aligned_cols=14 Identities=14% Similarity=-0.173 Sum_probs=6.3
Q ss_pred HHhhHhhhcChhhH
Q 045498 81 LIHDNWEKQGRFSA 94 (207)
Q Consensus 81 ll~~~~~~~~~~~a 94 (207)
.+...+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 33444445554433
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.51 E-value=22 Score=23.52 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=78.7
Q ss_pred HHHhhhhhhhHHHHH---HcCC----CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhh
Q 045498 18 RINGMCKIREIDSAI---KKGI----CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWE 87 (207)
Q Consensus 18 ll~~~~~~g~~~~a~---~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 87 (207)
.+...++.|+++... ..+. .++..-++.| ...+..|+.+- ++.+.+.|..++. .-++ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEI----VEFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 355566677777665 2221 1233333333 34455666544 4444455554432 2233 3344555
Q ss_pred hcChhhHHHHHHHHHhCCCCccH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNI---EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT--YNILINGLCKKGMIM 162 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~ 162 (207)
.|+.+- ++.+.+.|..++. .-.+ .+...++.|+.+-+ +.+.+.|..++... -...+...+..|+.+
T Consensus 83 ~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDEI----VKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHHH----HHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 666654 4444455544332 2222 33344556666544 44445565544322 123344445567666
Q ss_pred HHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCchhHHHHHHH
Q 045498 163 EADKLLVQMKEKGCFPDSTS--FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
-+. .+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 154 ~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 MVH----ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHH----HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 444 4444565554321 1223444556677665554443
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.49 E-value=34 Score=21.99 Aligned_cols=61 Identities=5% Similarity=-0.154 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--GVVTYNILIN-G-----LCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 173 (207)
.|...+..|-. |++-+|.++++..=.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555444 99999999999987765555 5667777777 2 2467999999999998865
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.25 E-value=51 Score=23.98 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMV 67 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~ 67 (207)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3445566666666666666666653
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.96 E-value=33 Score=21.71 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCCCcc
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKYELN 109 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~ 109 (207)
..+.++.-|...++.++|...++++..... ....+...+..++-+.+ ..+.+..++..+...++-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 457788999999999999999999853211 12233444444444432 24457777777776665433
No 322
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.58 E-value=27 Score=20.57 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
+..+...|++++|..+.+.+ ..||...|-.|- -.+.|-.+++..-+.++...| .|....|..
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34566788888888766443 367777776664 456777777777777777776 445555543
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.82 E-value=44 Score=22.80 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 045498 92 FSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 143 (207)
+....+|..|...|+-.. ...|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 578899999998887544 4566677888889999999999999988887666
No 324
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.44 E-value=23 Score=21.36 Aligned_cols=43 Identities=14% Similarity=-0.062 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+|+.+.+..+.|+...--.-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666777677665554444456667889999999999888764
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.15 E-value=23 Score=22.75 Aligned_cols=142 Identities=14% Similarity=-0.001 Sum_probs=66.4
Q ss_pred HHhhhhhhhHHHHH---HcCCCccHH---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc---chhhHHHHHhhHhhhc
Q 045498 19 INGMCKIREIDSAI---KKGICLDVF---VYSSLINGLCTFNRLKEAVELFDKMVAQGITA---ELVTYNPLIHDNWEKQ 89 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~ 89 (207)
+...++.|+.+-+. +.|..++.. -.+. +...+..|+.+-+..+++. .+..+ +..-.+ .+...+..|
T Consensus 43 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~~~~ 117 (201)
T 3hra_A 43 LNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAAEKG 117 (201)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc---cCcccccccCCCCc-HHHHHHHcC
Confidence 44445566666555 666555432 2233 3344556776655555533 22222 222222 334455667
Q ss_pred ChhhHHHHHHHH-HhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHH
Q 045498 90 GRFSAMALLQTL-ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN--ILINGLCKKGMIMEADK 166 (207)
Q Consensus 90 ~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~ 166 (207)
+.+-+..+++.- .... ..+..-.+.+..+.........-.++++.+.+.|..++..... +.+...++.|+.+-+..
T Consensus 118 ~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 118 HIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp CHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 766555555432 1111 1122233344444333332444567778888888776643321 23344455566654433
No 326
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=55.11 E-value=17 Score=22.11 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=33.2
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK 132 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 132 (207)
.|.-.|...+..++.+-|.++++.+.+.| +...|.+.+-.|-..=+++.+.++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45556666667777777777777776665 445566666666655555555443
No 327
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=55.02 E-value=22 Score=24.08 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=64.4
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHhcC---CCHHHHHHHHHHHHhCCCC--------
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNI-------EVYSLVIDGLCRV---GRWEEARKKLDQLSEKGLV-------- 142 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~~g~~-------- 142 (207)
.+...+..|+.+.+..+++.+.+.|..++. .-.+.+..+ +.. |+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455677889998888888877777654432 333444444 334 7777777777655443211
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---------------HHHHHHHHHhcCchhHHHHHHH
Q 045498 143 --PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS---------------FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 143 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.|....+.|.. .+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 84 ~~~d~~g~t~L~~-A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 84 TDEFYQGHSALHI-AIEKRSLQCVKLL----VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CSTTTTTCCHHHH-HHHTTCHHHHHHH----HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCHHHH-HHHcCCHHHHHHH----HHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11223344443 4567776655444 44555544322 1223344456677666655554
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=54.73 E-value=62 Score=23.91 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 045498 44 SSLINGLCTFNRLKEAVELFDKM 66 (207)
Q Consensus 44 ~~ll~~~~~~~~~~~a~~~~~~m 66 (207)
..+|.-|...|+.++|...++++
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444455555555555555554
No 329
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=54.23 E-value=71 Score=25.29 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
......++..+=.--+..--.-++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|++.|+++.+
T Consensus 500 gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 500 KKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3344444433322223445555666666666666676666666554332 33334 455556666666543
No 330
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=53.96 E-value=30 Score=20.09 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498 93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVG 124 (207)
Q Consensus 93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 124 (207)
.+.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35666666666677777666666666655544
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=53.86 E-value=45 Score=24.02 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=41.5
Q ss_pred HHhhhhhhhHHHHH---HcCCCccHHh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498 19 INGMCKIREIDSAI---KKGICLDVFV--YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS 93 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 93 (207)
|...+..|+.+... +.|..++... -.+.+...+..|+.+-+. .+.+.|..++...-...+...+..|+.+-
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence 33444556655554 5555554322 122334444556654333 33333433333222334445556677766
Q ss_pred HHHHHHHHHhCCCCcc
Q 045498 94 AMALLQTLERDKYELN 109 (207)
Q Consensus 94 a~~~~~~m~~~~~~~~ 109 (207)
+..+++.....|..++
T Consensus 100 v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 100 VVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHHHHHTCCHH
T ss_pred HHHHHHhccccCCCHH
Confidence 6666666555454443
No 332
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.57 E-value=45 Score=23.96 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhh
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTS 182 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 182 (207)
-...++.-|...|+.++|.+.++++...... ......++..+.-+.++ .+.+.+++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567888888899999999999988642111 23344444455544432 4567788888887766544443
No 333
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=53.21 E-value=40 Score=21.66 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC--hhhHHHHHHHHHh
Q 045498 43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG--RFSAMALLQTLER 103 (207)
Q Consensus 43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~ 103 (207)
...++.-|...++.++|...++++..... .......++......++ .+.+-.++..+..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45677888888999999999988753221 11222233332222222 3345666666644
No 334
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=53.10 E-value=37 Score=24.46 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 176 (207)
+++.+.+.|+.|...++..++..|.+.=.++.+..+++.+...|.
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 444555556666666666666666655556666666666665543
No 335
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.88 E-value=67 Score=23.72 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=54.6
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLVPGVVTYNILING 154 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 154 (207)
..+.++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577889999999999999999998754322 34456666667766543 46688889888888776554444444444
Q ss_pred HH
Q 045498 155 LC 156 (207)
Q Consensus 155 ~~ 156 (207)
+.
T Consensus 298 l~ 299 (358)
T 3eiq_C 298 YN 299 (358)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 336
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=52.57 E-value=31 Score=19.81 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA 164 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 164 (207)
..+.|.++++.+...|. ..|..++.++...|+...|
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 45555555555555432 2555555555544444433
No 337
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=52.35 E-value=72 Score=23.92 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498 42 VYSSLINGLCTFNR---LKEAVELFDKMVAQG----ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114 (207)
Q Consensus 42 ~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (207)
.-..++...+..|+ .++|.+.|++....+ ++||... .+...-.+ ..++-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHH
Confidence 34456667777776 467788888876542 5555321 11111111 233344455555544 3555677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHH----HHHcCCCCChhhHHHHHHH
Q 045498 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQ----MKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~----m~~~~~~p~~~~~~~l~~~ 189 (207)
.++.+++...+.+...++++......+........ ++.+.... --.+.|++.+.+ +.+. ..++...+..++..
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 88999999999999999998887765322333333 33344332 233555555542 2222 22334556666655
Q ss_pred HHh----cCchhHHHHHHH
Q 045498 190 FLV----KNETDRASSFLK 204 (207)
Q Consensus 190 ~~~----~~~~~~a~~~~~ 204 (207)
... ..+.++..++|+
T Consensus 350 ~~~~~~t~~~l~e~~~Ff~ 368 (419)
T 3rjo_A 350 TTNQFSTRTRLEEVKGFFS 368 (419)
T ss_dssp TTTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHH
Confidence 432 234445555544
No 338
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=51.85 E-value=43 Score=21.49 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhCCCCCChhh
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEKGLVPGVVT 147 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~ 147 (207)
...++.-|...++.++|...++++......| ..+-..+-.++-+... -+.+-.++..+.. ++-+....
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~-~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i 81 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS-GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG-HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHH
Confidence 4568888999999999999999987544332 2233333334433322 3446677777644 44434444
No 339
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.69 E-value=61 Score=22.96 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=62.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcc---hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH--HHHHHHHHHh
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITAE---LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE--VYSLVIDGLC 121 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 121 (207)
+...++.|+.+-+..++++ .|..++ ..-.+.+..++. .+.......+.+.+.+.|..++.. .-.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3444566776655444432 333332 222233333222 223333344455556666544321 1112333445
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR 198 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 198 (207)
..|..+.+..+++. .|..++ ..-.+.|..+ ++.|+.+ +.+.+.+.|..+|..+ .+...++.|+.+-
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~i 316 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHSL 316 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHHH
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHHH
Confidence 66776665544432 233222 2223334333 4566654 3444556677676654 2333345566554
Q ss_pred HHHH
Q 045498 199 ASSF 202 (207)
Q Consensus 199 a~~~ 202 (207)
+.-+
T Consensus 317 v~~L 320 (337)
T 4g8k_A 317 VKVL 320 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 340
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.51 E-value=39 Score=20.61 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCCCcc
Q 045498 42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKYELN 109 (207)
Q Consensus 42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~ 109 (207)
....++.-|...|+.++|...++++..... ....+...+..++-+.+ ..+.+..++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356788888889999999999998852211 12233344444444432 23557777777776665433
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=51.36 E-value=1.1e+02 Score=25.82 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498 44 SSLINGLCTFNR---LKEAVELFDKMVAQG----ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV 116 (207)
Q Consensus 44 ~~ll~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 116 (207)
..++...+..|. .+.|.+.|++....+ ++||. -........+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666677776 356778888776532 44543 3334444456677666666777766643 34445678
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHh
Q 045498 117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKE---KGCFPDSTSFNTVIQGFLV 192 (207)
Q Consensus 117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~ 192 (207)
+.+++-..+.+...++++............... ++.+.... --.+.|++.+.+=-+ .....+...+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888889888888888776543222233333 33333322 223444444433111 1122334456666665543
No 342
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=51.09 E-value=31 Score=22.75 Aligned_cols=144 Identities=17% Similarity=0.031 Sum_probs=73.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHHHHHHhc
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI---EVYSLVIDGLCR 122 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 122 (207)
.+...++.|+.+....+++.-...-..++..-.+ .+...+..|+.+-+..+ .+.|..++. ...+.+ ...++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHH----HHhCCCCCCcCCCCCCHH-HHHHH
Confidence 4566677899988888776543221122333333 44455666776554444 444544332 222233 33345
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCchh
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS--FNTVIQGFLVKNETD 197 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~ 197 (207)
.|+.+ +++.+.+.|..++.. ..+. +...+..|+.+-+. .+.+.|..++... -...+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTP-LHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 56654 455555666655432 2333 44445667766444 4445665554321 122344455667776
Q ss_pred HHHHHHH
Q 045498 198 RASSFLK 204 (207)
Q Consensus 198 ~a~~~~~ 204 (207)
-+..+++
T Consensus 154 ~v~~Ll~ 160 (231)
T 3aji_A 154 MVHILLF 160 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555543
No 343
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=50.96 E-value=21 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=14.4
Q ss_pred CCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 175 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
+++|++.||..+...+-+..-..+++.+.+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 345556666655555444433334444433
No 344
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=50.84 E-value=73 Score=23.55 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=41.9
Q ss_pred hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhCCCCCChhhH
Q 045498 77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEKGLVPGVVTY 148 (207)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~ 148 (207)
....+|.-|...++.++|.+.++++.....-....++..+..++-+... -+.+-.++..+...|+-+.....
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3566888899999999999999987632100013344444444444322 34456666777766554333333
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.92 E-value=58 Score=23.67 Aligned_cols=95 Identities=20% Similarity=0.043 Sum_probs=52.1
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLC 156 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 156 (207)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.. .-+.+..++..+.+.|+-+.......+-..+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 456788888899999999988887543322 2234444444444322 24556677777777665433333222222222
Q ss_pred hc----CCHHHHHHHHHHHHH
Q 045498 157 KK----GMIMEADKLLVQMKE 173 (207)
Q Consensus 157 ~~----~~~~~a~~~~~~m~~ 173 (207)
.. =+...|...+..+..
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHG
T ss_pred hChHhhcCccchHHHHHHHHH
Confidence 21 144456666666543
No 346
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=48.57 E-value=40 Score=22.22 Aligned_cols=86 Identities=9% Similarity=-0.129 Sum_probs=42.9
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHH--HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---------ChhhHH
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIE--VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP---------GVVTYN 149 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~ 149 (207)
.+...+..|+.+-+.. +.+.|..++.. .-.+.+...+..|+.+-+..+++.+.+.|..+ |....+
T Consensus 124 ~L~~A~~~~~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t 199 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRL----LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199 (232)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC
T ss_pred HHHHHHHcCCHHHHHH----HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC
Confidence 3444455566544333 33444433211 11233444456777777777777777776533 222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 045498 150 ILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 150 ~li~~~~~~~~~~~a~~~~~~m 171 (207)
. +...++.|+.+-+..+++.-
T Consensus 200 p-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 200 P-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp H-HHHHHHHTCHHHHHHHHHHH
T ss_pred H-HHHHHHcCCHHHHHHHHhcC
Confidence 3 33345566666555555543
No 347
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=48.06 E-value=19 Score=21.94 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 167 (207)
.|--.|...+..++.+-|.++++...+.| +...|.+++..|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45566777788999999999999999876 777888888888888777777664
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.73 E-value=1.3e+02 Score=25.57 Aligned_cols=108 Identities=11% Similarity=-0.027 Sum_probs=64.5
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----------------
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP----------------- 143 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~----------------- 143 (207)
++..|...+..+-+.++... .+.+...-..+..+|...|++++|.+.|++.- .|+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 44445555555544433322 22344444567788889999999999998643 12211
Q ss_pred ------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 045498 144 ------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS----TSFNTVIQGFLVKN 194 (207)
Q Consensus 144 ------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~ 194 (207)
...-|..++..+-+.+.++.+..+-+...+.--.-|. ..|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124677778888888888888888877764222222 25666666665544
No 349
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=47.63 E-value=50 Score=20.80 Aligned_cols=133 Identities=10% Similarity=0.116 Sum_probs=68.7
Q ss_pred cchhhHHHHHhhHhhh-cChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCChhhHH
Q 045498 73 AELVTYNPLIHDNWEK-QGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYN 149 (207)
Q Consensus 73 ~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~ 149 (207)
.+..-+..++..+... .....+..+++.+-..+ -..+..-|..++.........+....+|+.+-..|- ..+..-+.
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~ 115 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMM 115 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 3434444444433322 23344566666654332 134555555555555444455566667776654321 12333333
Q ss_pred HHHHHHH-hcCC-----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498 150 ILINGLC-KKGM-----------IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM 207 (207)
Q Consensus 150 ~li~~~~-~~~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 207 (207)
.++.... ..|. .+.+..+|+.+-..| -...+|.-++..+.+...+-+....++.++
T Consensus 116 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~l 183 (183)
T 1s6c_A 116 DIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQNVM 183 (183)
T ss_dssp HHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhccC
Confidence 3333221 1132 255666776664432 234678888888877777778887777654
No 350
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.32 E-value=1.1e+02 Score=24.56 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115 (207)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 115 (207)
+...+...+.-+.+. +.+.|...|....+...-.+. .....+.......+...++...+...... .++.....-
T Consensus 214 ~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 290 (618)
T 1qsa_A 214 TRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHH
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHH
No 351
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=47.05 E-value=17 Score=23.94 Aligned_cols=165 Identities=11% Similarity=0.059 Sum_probs=75.5
Q ss_pred HHhhhhhhhHHHHH---HcCCC----ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch------hhHHHHHhhH
Q 045498 19 INGMCKIREIDSAI---KKGIC----LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL------VTYNPLIHDN 85 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~ 85 (207)
+...++.|+.+... +.+.. .+..-.+.| ...+..|+.+ +++.+.+.|..++. .-.+ .+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t-~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL-HWSVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWT-PFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCC-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHH-HHHHHcCCHH----HHHHHHhccccccccccCCCCCCC-HHHHH
Confidence 34445566666655 33322 233333333 3444566654 44455555522222 2233 34445
Q ss_pred hhhcChhhHHHHHHHHHhCCCCcc-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhc
Q 045498 86 WEKQGRFSAMALLQTLERDKYELN-----IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT--YNILINGLCKK 158 (207)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 158 (207)
+..|+.+ +++.+.+.|..++ ....+. +...++.|+.+-+ +.+.+.|..++... -...+...+..
T Consensus 80 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 80 CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVS----QFLIENGASVRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred HHcCCHH----HHHHHHhCCCCcccccCCcCCCCH-HHHHHHcCCHhHH----HHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 5566654 4444555552222 222223 3344556665544 44445565554322 12233444566
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC---hhhHHHHHHHHHhcCchhHHHHHH
Q 045498 159 GMIMEADKLLVQMKEKG-CFPD---STSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 159 ~~~~~a~~~~~~m~~~~-~~p~---~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
|+.+- ++.+.+.| ..++ ..-.+ .+...+..|+.+-+..++
T Consensus 151 ~~~~~----v~~Ll~~g~~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 151 GSLKL----IELLCGLGKSAVNWQDKQGWT-PLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp TCHHH----HHHHHTTTCCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred CCHHH----HHHHHhcCcccccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 76653 44444555 3332 22222 334445677776666555
No 352
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.71 E-value=78 Score=22.74 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=52.4
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGL 155 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 155 (207)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+.+.|+-+.......+-..+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456888888999999999999998743322 34456666677766543 566788888888877665444444333333
No 353
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.23 E-value=54 Score=21.65 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=6.3
Q ss_pred HHhhhhhhhHHHHH
Q 045498 19 INGMCKIREIDSAI 32 (207)
Q Consensus 19 l~~~~~~g~~~~a~ 32 (207)
+...+..|+.+-..
T Consensus 15 L~~A~~~g~~~~v~ 28 (237)
T 3b7b_A 15 LHAAAEAGHVDICH 28 (237)
T ss_dssp HHHHHHHTCHHHHH
T ss_pred HHHHHHcCcHHHHH
Confidence 33344455554443
No 354
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=46.22 E-value=49 Score=22.60 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=35.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc-------chhhHHHHHhhHh--hhcChhhHHHHHHHH
Q 045498 47 INGLCTFNRLKEAVELFDKMVAQGITA-------ELVTYNPLIHDNW--EKQGRFSAMALLQTL 101 (207)
Q Consensus 47 l~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~m 101 (207)
+...++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 444457888888888888776655332 3344556665554 357777777777664
No 355
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=46.08 E-value=52 Score=23.88 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhC---CCCcc---hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHH
Q 045498 57 KEAVELFDKMVAQ---GITAE---LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEAR 130 (207)
Q Consensus 57 ~~a~~~~~~m~~~---~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 130 (207)
+.|..+|..+... ...++ ....-..+..+.+..++ ++++.+.+.|+.|...++.-++..|++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4577777777653 12222 12222333344444443 45666777889988888999999999988999999
Q ss_pred HHHHHHHhCCCCCC-hhhH--HHHHHHH----HhcCCHHHHHHHHHHHH
Q 045498 131 KKLDQLSEKGLVPG-VVTY--NILINGL----CKKGMIMEADKLLVQMK 172 (207)
Q Consensus 131 ~~~~~~~~~g~~~~-~~~~--~~li~~~----~~~~~~~~a~~~~~~m~ 172 (207)
++|+.+...|.... ...| -+++..+ ....+++++..+++.+.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 99999999875533 2222 2333222 33577888887776543
No 356
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.95 E-value=1.4e+02 Score=25.49 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=22.3
Q ss_pred hhcChhhHHHHHHHHHhCCCCccHHHHH--HHHHHHhcCCCHHHHHHHHHHHHh
Q 045498 87 EKQGRFSAMALLQTLERDKYELNIEVYS--LVIDGLCRVGRWEEARKKLDQLSE 138 (207)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~ 138 (207)
..|+.+.+..+.+.+.... .|...--. ++.-+|+..|+.....+++..+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 3445555555555544321 22221111 222344555555555555555554
No 357
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=45.49 E-value=60 Score=21.06 Aligned_cols=114 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 135 (207)
.+.+..+++.+.+.|.--|...-...+....+.|.+ ....+-.++.+.|+.++ +....+..+......+.|..+++.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHH
Confidence 345667778888888766665556666666555443 34566777888887643 222222222111223455555554
Q ss_pred HHh-CCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 045498 136 LSE-KGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMK 172 (207)
Q Consensus 136 ~~~-~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 172 (207)
-.. ....++.....-++..+.+.| .++.+..+++.+.
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 322 211222334455566666666 4555666666554
No 358
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.30 E-value=57 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 045498 92 FSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG 144 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 144 (207)
+++..+|..|...|+-.. ...|-.....+-..|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 458899999988876544 45667778888899999999999999988876663
No 359
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=45.27 E-value=69 Score=21.66 Aligned_cols=51 Identities=8% Similarity=0.039 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE 107 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 107 (207)
.+.+..+++.+.+.|.--|...-...+....+.+.+ ....+-.++.+.|+.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 344455555555555554444334444443332111 234455556666654
No 360
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.09 E-value=1.1e+02 Score=23.69 Aligned_cols=139 Identities=9% Similarity=0.010 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498 54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL 133 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 133 (207)
.+.+-|.++- .+.|++--...|..-.+.+...|++++|.++--.-.+ |+-.+..|.+.+-..-..-|+..-....|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5566555544 3445555556677777777888888888777765443 33446777766666555667767777788
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
..+.+.| +.+..---.+++.-...|+.+...+.+. +..+..++. ..-++ +..+..-|..+|.+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEe-LGDlv----k~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEE-LGDLV----KSVDPTLALSVYLR 481 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHH-HHHHH----HHHCSHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHH-hHhhh----hhcCHHHHHHHHHH
Confidence 8777776 3465555556666666777666555443 334555554 33333 33356666666654
No 361
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.55 E-value=66 Score=24.64 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh--------hhHHHH-HHHHHhcCCHHHHHHHHHHH
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV--------VTYNIL-INGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--------~~~~~l-i~~~~~~~~~~~a~~~~~~m 171 (207)
...+.++..|.+.++...+..+++.+...+..|+. .+|.-. -..++..+++.+|.+-+...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 45678889999999999999999999887663332 233322 24445566666666655443
No 362
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.09 E-value=63 Score=21.05 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=40.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199 (207)
Q Consensus 143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 199 (207)
|....++.++..++...-++.+...+.+....|. .+..+|.--++.+++..-+.+|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3445578888888888888888888888888774 5677777777777776655554
No 363
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.62 E-value=38 Score=17.97 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498 148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN 194 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 194 (207)
++.++..++...-++++...+.+..+.|. .+..+|.--++.+++..
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555542 24444444444444433
No 364
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=42.53 E-value=1.6e+02 Score=24.97 Aligned_cols=91 Identities=14% Similarity=0.009 Sum_probs=57.8
Q ss_pred HHHHhhHhhhcCh---hhHHHHHHHHHhCC----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 79 NPLIHDNWEKQGR---FSAMALLQTLERDK----YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 79 ~~ll~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
..++...|..|.. +.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...+. .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3456666776654 45777887765432 455532 23333344567766666777777765 244455678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 045498 152 INGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
+.+++-..+.....++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 88888888888888888776654
No 365
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=42.25 E-value=93 Score=22.35 Aligned_cols=128 Identities=8% Similarity=0.019 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHhCC-----CCcchhhHHH---HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 55 RLKEAVELFDKMVAQG-----ITAELVTYNP---LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~-----~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
.-++|..+|..+.... ..|+...... .+..+.+..++ +++..+.+.|+.|...++.-++..|++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 4567889988886542 2233222211 12223333332 5666777888888888888888888888889
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498 127 EEARKKLDQLSEKGLVPGVVTYNILINGL----CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG 189 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 189 (207)
+.+.++|+.+...|.+.-....-+++..+ .+..+.++...+++..... .+......++.-
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~ 303 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQ 303 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHH
Confidence 99999999998887542222222233222 2334677777766653221 233444445543
No 366
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.83 E-value=1.1e+02 Score=23.20 Aligned_cols=102 Identities=13% Similarity=-0.015 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHh--------CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-------CCC------------
Q 045498 92 FSAMALLQTLER--------DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-------VPG------------ 144 (207)
Q Consensus 92 ~~a~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-------~~~------------ 144 (207)
++...+++.... .++..+......++.. -.|+...+..+++.+..... ..+
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 445555555443 2234455555555554 35677777777666543211 011
Q ss_pred ------hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498 145 ------VVTYNILINGL---CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE 195 (207)
Q Consensus 145 ------~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 195 (207)
......+++++ .+.++.+.|..++.+|.+.|..|....-..++.+.-.-|.
T Consensus 246 ~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 246 ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 11122344444 3457899999999999999887765544444555544443
No 367
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=41.46 E-value=40 Score=18.17 Aligned_cols=36 Identities=8% Similarity=0.166 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcCh
Q 045498 55 RLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~ 91 (207)
..++|...|.+|++. ++.| ..+|...+..+..-.++
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-NASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCccc
Confidence 457888888888754 4444 46888888766655444
No 368
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=41.14 E-value=42 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498 132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175 (207)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 175 (207)
+++.+.+.|+.|...++.-++..|.+.=.++.+..+++.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34444555666666666666666665556666666666666554
No 369
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=41.00 E-value=69 Score=20.59 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 134 (207)
..+.|.++++.+...|..|+....... ...+......++...+.... -...++.++..+...+++.. ..+++
T Consensus 52 E~~HA~~l~~~i~~~gg~~~l~~i~~p------~~~~~~~~e~le~aL~~E~~-v~~~~~~l~~~a~~~~D~~t-~~fle 123 (173)
T 1s3q_A 52 ELMHAMKMFDFVSERGGRVKLYAVEEP------PSEWDSPLAAFEHVYEHEVN-VTKRIHELVEMAMQEKDFAT-YNFLQ 123 (173)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCChhH-HHHHH
Confidence 346777888888877776654332111 12223445555544433211 34467777777777777543 33333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174 (207)
Q Consensus 135 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 174 (207)
.+...... .......++.-+.+.|....+.-+|++-...
T Consensus 124 ~~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~~ 162 (173)
T 1s3q_A 124 WYVAEQVE-EEASALDIVEKLRLIGEDKRALLFLDKELSL 162 (173)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHHhh
Confidence 34332222 4445566666666666656677777765544
No 370
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.68 E-value=73 Score=20.67 Aligned_cols=48 Identities=15% Similarity=-0.055 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
+..+-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 4444444455555544432 2223333332 2344444455555555554
No 371
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.43 E-value=1e+02 Score=22.06 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch
Q 045498 19 INGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 75 (207)
+...+..|+.+-+. +.|..++...-.+.+...+..|+.+-+..+++.-...|..++.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 34444555555544 4554444322223344445667777666666665555655543
No 372
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.29 E-value=76 Score=23.48 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHhhhhhhhHHHHH---HcCCCccHHh--HHHHHHHHHhcCChhHHHHHH
Q 045498 19 INGMCKIREIDSAI---KKGICLDVFV--YSSLINGLCTFNRLKEAVELF 63 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~ 63 (207)
+...+..|+++-.. +.|..|+... ..+.+...+..|+.+-+..++
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34444555555544 5555444221 122333344555554433333
No 373
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.26 E-value=46 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=16.6
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
.+-.|.++|.+++|.+++++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 445778888888888888875433
No 374
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.76 E-value=1.4e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH-------HHhhHhhhcChhhHHHHHHHHHhC
Q 045498 40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP-------LIHDNWEKQGRFSAMALLQTLERD 104 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~m~~~ 104 (207)
...+|.+++.|...+.++.|..+..+.. ++.+...-+. +-..+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5678889999999999999999998774 1212111122 234556677888888888876654
No 375
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.69 E-value=42 Score=17.32 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.9
Q ss_pred cCChhHHHHHHHHHHhCC-CCcc
Q 045498 53 FNRLKEAVELFDKMVAQG-ITAE 74 (207)
Q Consensus 53 ~~~~~~a~~~~~~m~~~~-~~~~ 74 (207)
.-+++.|...|.+++..| +||+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 458899999999998654 5554
No 376
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.46 E-value=83 Score=20.64 Aligned_cols=175 Identities=11% Similarity=-0.037 Sum_probs=87.0
Q ss_pred HHhhhhhhhHHHHH---Hc-CCCccHH---hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCcchhhHHHHHhhHhh
Q 045498 19 INGMCKIREIDSAI---KK-GICLDVF---VYSSLINGLCTFNRLKEAVELFDKMVAQG----ITAELVTYNPLIHDNWE 87 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~-~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~ 87 (207)
+...++.|+.+... +. |..++.. -++ .+...+..|+.+-+..+++.-.... ...|..-.+ .+...+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHH
Confidence 34445666666555 33 5544432 233 3444456677766655554322110 011112233 3445556
Q ss_pred hcChhhHHHHHHHHHhCCCCccHH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhh--HHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIE---------------VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT--YNI 150 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~---------------~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 150 (207)
.|+.+-+..+ .+.|..++.. .-.+.+...++.|+.+- ++.+.+.|..++... -.+
T Consensus 85 ~~~~~~v~~L----l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 85 NQNVNLVRAL----LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI----VRLLIEHGADIRAQDSLGNT 156 (232)
T ss_dssp TTCHHHHHHH----HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCC
T ss_pred cCCHHHHHHH----HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCC
Confidence 6776544444 4445443321 01223333345566544 444455666554322 123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498 151 LINGLCKKGMIMEADKLLVQMKEKGCFP---------DSTSFNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 151 li~~~~~~~~~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.+...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 4455567889998888888888877543 2222333 344456666666555544
No 377
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=38.43 E-value=72 Score=21.73 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHhhHhhhcChhhHHHHHHHHHhCCCCc-------cHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhC---------CCC
Q 045498 81 LIHDNWEKQGRFSAMALLQTLERDKYEL-------NIEVYSLVIDGLC--RVGRWEEARKKLDQLSEK---------GLV 142 (207)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~---------g~~ 142 (207)
.+...++.|+.+.+..+++.....+... +..-.+.|..+.. +.|+.+-+..+++.-... +..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 4445667899998888888776655332 2233445544543 468888887777764321 111
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCchhHHHHHHH
Q 045498 143 -PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS----------------FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 143 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
.|....+.|..+ +..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+..+++
T Consensus 96 ~~d~~g~tpL~~A-~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 96 DSYYKGQTALHIA-IERRNMTLVTLLV----ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp STTTTTCCHHHHH-HHTTCHHHHHHHH----HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCCHHHHH-HHcCCHHHHHHHH----HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 222334444444 5667766554444 4455444322 1223344456677666655554
No 378
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.43 E-value=78 Score=20.35 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=73.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH---HHHHHHHHHh-cCC
Q 045498 50 LCTFNRLKEAVELFDKMVAQGIT-AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE---VYSLVIDGLC-RVG 124 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~-~~~ 124 (207)
.++.|+++....++. .+.. .+...-.+.+...+..++.+.-.++.+.+.+.|..++.. -.+.|..++. ...
T Consensus 13 Aa~~g~~~~~~~l~~----~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFE----KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHH----HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHh----cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 356788877555553 2321 111112344555566666666667777788888766542 2333333322 233
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCCH-HHHHHHHHHHHH-cCCCCChhh
Q 045498 125 RWEEARKKLDQLSEKGLVPGVVTYNIL---INGLCKKGMI-MEADKLLVQMKE-KGCFPDSTS 182 (207)
Q Consensus 125 ~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~~~~-~~a~~~~~~m~~-~~~~p~~~~ 182 (207)
+.....++.+.+.+.|..++......- +...+..+.. .....+++.+.+ .|..++...
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 455667788888888888887654422 2222333333 455667888888 888877743
No 379
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=38.12 E-value=79 Score=20.53 Aligned_cols=168 Identities=8% Similarity=-0.113 Sum_probs=77.6
Q ss_pred HHHHhhhhhhhHHHHH---HcCCCccHHh--HHHHHHHHHhcCChhHHHHHHHHHHhCCC-C---cchhhHHHHHhhHhh
Q 045498 17 IRINGMCKIREIDSAI---KKGICLDVFV--YSSLINGLCTFNRLKEAVELFDKMVAQGI-T---AELVTYNPLIHDNWE 87 (207)
Q Consensus 17 ~ll~~~~~~g~~~~a~---~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~---~~~~~~~~ll~~~~~ 87 (207)
+.+...++.|+.+-+. +.|..++... -.+.+...+..|+.+-+..++ +.+. . .+..-.+ .+...+.
T Consensus 27 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t-~L~~A~~ 101 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGTT-PLILAAR 101 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HBTTSCTTCCCTTCCC-HHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCc-HHHHHHH
Confidence 3445556677776655 6666655322 123344455667665444443 3332 1 1222233 3444455
Q ss_pred hcChhhHHHHHHHHHhCCCCccHHH--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHH
Q 045498 88 KQGRFSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGMIM 162 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~ 162 (207)
.++.+-+. .+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.. -.+. +...++.|+.+
T Consensus 102 ~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~ 172 (223)
T 2f8y_A 102 LAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVDAA----VVLLKNGANKDMQNNREETP-LFLAAREGSYE 172 (223)
T ss_dssp HTCHHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHH
T ss_pred hCcHHHHH----HHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCcCH-HHHHHHcCCHH
Confidence 66655444 3444554432211 11233334556665544 4445556555432 2333 34445667665
Q ss_pred HHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCchhHHHHH
Q 045498 163 EADKLLVQMKEKGCFPDSTS--FNTVIQGFLVKNETDRASSF 202 (207)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~ 202 (207)
-+ +.+.+.|..|+... -...+...++.|+.+-+.-+
T Consensus 173 ~v----~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 173 TA----KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp HH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHH
Confidence 44 44455555554321 11233444566665544433
No 380
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=38.02 E-value=64 Score=19.22 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVPGVVTYNILINGLCKKGMIMEADKLL 168 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 168 (207)
.+.++..-+++.... +++......++..+-.. ++.+.++.+...+ .|+ .+.++...+....+.|-++.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 455666666666544 45666666666665433 3455555554443 455 456777777777777766544 444
Q ss_pred HHHH
Q 045498 169 VQMK 172 (207)
Q Consensus 169 ~~m~ 172 (207)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 381
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.87 E-value=1.2e+02 Score=23.36 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------hHH-HHHHHHHhcCchhHHHHHHHhh
Q 045498 147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST--------SFN-TVIQGFLVKNETDRASSFLKKN 206 (207)
Q Consensus 147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~m 206 (207)
..+.+...|.+.+++..+..+++.+...+..|+.. +|. -+.+.+...+++.+|.+.+.+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 36788899999999999999999998876643332 222 2445567788888888877653
No 382
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=37.85 E-value=74 Score=19.91 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=55.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH--HHHHHHHHhcCCCH
Q 045498 49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV--YSLVIDGLCRVGRW 126 (207)
Q Consensus 49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~ 126 (207)
..++.|+.+.+..+++.-...--..+..-++ .+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFS-PLHWACREGRSAVV----EMLIMRGARINVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCCC-HHHHHHHcCcHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 3456778776666655321111122333333 44455566776544 44444554443211 11223334556665
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 127 EEARKKLDQLSEKGLVPGVVTY--NILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
+ +++.+.+.|..++.... ...+...+..|+.+- .+.+.+.|..++.
T Consensus 86 ~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~ 133 (179)
T 3f6q_A 86 D----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV----AEDLVANGALVSI 133 (179)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCSSB
T ss_pred H----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCcch
Confidence 5 44455556665543321 223344455666543 4444556655543
No 383
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.80 E-value=42 Score=17.01 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=6.1
Q ss_pred hhHHHHHHHhh
Q 045498 196 TDRASSFLKKN 206 (207)
Q Consensus 196 ~~~a~~~~~~m 206 (207)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 384
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=37.12 E-value=67 Score=23.23 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=55.9
Q ss_pred ChhHHHHHHHHHHhCC-----CCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498 55 RLKEAVELFDKMVAQG-----ITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~-----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 126 (207)
.-++|..+|..+.... ..++. ..+-..+..+.+..++ ++++.+.+.|+.|...++.-++..|++.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 3467888888776431 12222 2222233344444443 4566677888898888888888888888889
Q ss_pred HHHHHHHHHHHhCCC
Q 045498 127 EEARKKLDQLSEKGL 141 (207)
Q Consensus 127 ~~a~~~~~~~~~~g~ 141 (207)
+.+.++|+.+...|.
T Consensus 245 ~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 245 DLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999988763
No 385
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=37.09 E-value=1.1e+02 Score=21.63 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCcchh--hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc---cHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 045498 61 ELFDKMVAQGITAELV--TYNPLIHDNWEKQGRFSAMALLQTLERDKYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQ 135 (207)
Q Consensus 61 ~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 135 (207)
.+.+.+.+.|..++.. .-.+.+...+..|..+.+..++.. .|..+ |..-.+.|..+ ++.|+.+ +++.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 3444455666544432 112334455566666555444321 22222 22222233322 4455543 4455
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 136 ~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
+.+.|..++..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 566676666544 233334556554 44455666655553
No 386
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.84 E-value=48 Score=18.49 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHHh-CCCCcchhhHHHHHhhHhhhcCh
Q 045498 55 RLKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGR 91 (207)
Q Consensus 55 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~ 91 (207)
-.+++...|.+|+. .++.|+ .+|...+...+.-.++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCcc
Confidence 35788888888875 455544 7888887766554444
No 387
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.53 E-value=95 Score=20.80 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=37.6
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh-----hhHHHHHHHHHhCCCC
Q 045498 43 YSSLINGLC---TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-----FSAMALLQTLERDKYE 107 (207)
Q Consensus 43 ~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~ 107 (207)
.-.+|+++. +.++++.|+-.+-+|.+.| .|.-..=..++-+.-.-|.- ..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334555554 4578889999999999888 55544444444444333432 2355555555666654
No 388
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=35.17 E-value=1e+02 Score=20.81 Aligned_cols=169 Identities=13% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHhhhhhhhHHHHH---HcCCCccH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh--hHHHHHhhHhhhcC
Q 045498 19 INGMCKIREIDSAI---KKGICLDV---FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV--TYNPLIHDNWEKQG 90 (207)
Q Consensus 19 l~~~~~~g~~~~a~---~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~ 90 (207)
+...+..|+.+... +.|..++. .-.+. +...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSP-LHEACLGGHLSCVK----ILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH-HHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34445566666555 66665543 22333 34444567665444 444455444321 12233445555666
Q ss_pred hhhHHHHHHHHHhCCCCccHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHHHHHHH
Q 045498 91 RFSAMALLQTLERDKYELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY--NILINGLCKKGMIMEADKL 167 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~~~~~~a~~~ 167 (207)
.+-+.. +.+.|..++.. ...+.+...++.|+.+ +++.+.+.|..++.... ...+...+..|+.+-+..+
T Consensus 82 ~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 82 WDCVNL----LLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HHHHHH----HHHTTCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH----HHHCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 654444 44444433211 0122333445566655 44455555655443211 1334444567776655444
Q ss_pred HHHHHHcCCCCChhh-HHHHHHHHHhcCchhHHHHHHH
Q 045498 168 LVQMKEKGCFPDSTS-FNTVIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 168 ~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~ 204 (207)
+ +.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 154 l----~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 187 (261)
T 2xai_A 154 L----ESGADVNQGKGQDSPLHAVARTASEELACLLMD 187 (261)
T ss_dssp H----HHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred H----HcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHH
Confidence 4 4455443211 1123344456666665554443
No 389
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.48 E-value=65 Score=18.51 Aligned_cols=20 Identities=20% Similarity=0.002 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 045498 148 YNILINGLCKKGMIMEADKL 167 (207)
Q Consensus 148 ~~~li~~~~~~~~~~~a~~~ 167 (207)
+.--...+.+.|++++|.+.
T Consensus 18 ~~RrAe~ll~~gkydeAIec 37 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISC 37 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHH
Confidence 33444555555666655554
No 390
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=34.05 E-value=92 Score=19.90 Aligned_cols=10 Identities=0% Similarity=0.145 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 045498 127 EEARKKLDQL 136 (207)
Q Consensus 127 ~~a~~~~~~~ 136 (207)
+++..+++.+
T Consensus 129 ~~~~~~~~~~ 138 (191)
T 1y1x_A 129 QTFQALMRKF 138 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 391
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=33.95 E-value=1.1e+02 Score=20.57 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=52.8
Q ss_pred CCCCccHHHHHHHHHHHhcCCCHHHHHH-----------HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 045498 104 DKYELNIEVYSLVIDGLCRVGRWEEARK-----------KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK-LLVQM 171 (207)
Q Consensus 104 ~~~~~~~~~~~~li~~~~~~~~~~~a~~-----------~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m 171 (207)
....|....|...+...+..|++.++.- +.+.+.+.+..++...|..-|..|... .+.++.+ +.+.+
T Consensus 107 ~~~~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~-~f~~~v~~~~~~l 185 (221)
T 3ibx_A 107 ACPTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSK-EFQACVNWNINLL 185 (221)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSH-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 3445667788888877777787766533 223333332112345788888888743 3344333 33334
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCchh
Q 045498 172 KEKGCFPDSTSFNTVIQGFLVKNETD 197 (207)
Q Consensus 172 ~~~~~~p~~~~~~~l~~~~~~~~~~~ 197 (207)
.+.+...+......+...|.+.-+++
T Consensus 186 d~~~~~~~~~~~~~~~~~F~~a~~lE 211 (221)
T 3ibx_A 186 DSLTLASSKQEIEKLKEIFITTSEYE 211 (221)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 34444456666777777776654443
No 392
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.22 E-value=88 Score=20.38 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=21.0
Q ss_pred HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498 78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122 (207)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 122 (207)
++.++..++...-.+.++..+.+..+.| ..+..+|---++.+++
T Consensus 114 ~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 114 LNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555444 2344444444444443
No 393
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.99 E-value=1.1e+02 Score=20.46 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh-----hhHHHHHHHHHhCCCC
Q 045498 43 YSSLINGLC---TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-----FSAMALLQTLERDKYE 107 (207)
Q Consensus 43 ~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~ 107 (207)
.-.+|+++. +.++++.|+-.+-+|.+.|..|.-..=..++-+.-.-|.- ..|...++.....|.+
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 79 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAY 79 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCc
Confidence 334555554 4689999999999999999776655555555444444432 2355566666666643
No 394
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=32.18 E-value=46 Score=21.63 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHhCCCCcc
Q 045498 56 LKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~ 74 (207)
.+.|.++++.+...|..|+
T Consensus 65 ~~HA~~l~e~i~~lGG~p~ 83 (181)
T 3bvf_A 65 YEHAKKLIIFLNENNVPVQ 83 (181)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 3556667777766665554
No 395
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.77 E-value=99 Score=19.54 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL 108 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 108 (207)
.+.+..+++.+.+.|.--|...-...+....+.| .....+-.++.+.|+.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 3445566666666665544444444454444433 23445556666666553
No 396
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.72 E-value=2.8e+02 Score=24.85 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=27.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 172 (207)
+.+++..|.+++.++.+. +|+...|..++..+...| |+......+++.
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINRMM 1343 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHhhh
Confidence 566677777777666665 356666666666655443 444444444443
No 397
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.23 E-value=1.1e+02 Score=19.83 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 045498 91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143 (207)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 143 (207)
.+.+..++..+.+.|+--|..--...+....+.|.+ ....+-.++...|+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 345778888899999875665556777777665443 3466677788888853
No 398
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=30.84 E-value=1.3e+02 Score=20.72 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=63.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-C---cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHHHHHHhc
Q 045498 50 LCTFNRLKEAVELFDKMVAQGI-T---AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI---EVYSLVIDGLCR 122 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~~m~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 122 (207)
.+..|+.+-+ +.+.+.|. . .+..-++.+..++........-.++++.+.+.|..++. .-.+. +...+.
T Consensus 118 A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp-Lh~A~~ 192 (276)
T 4hbd_A 118 SVSHANFPVV----QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTA-LMLAVS 192 (276)
T ss_dssp HHHTTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCH-HHHHHH
T ss_pred HHHCCCHHHH----HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCH-HHHHHH
Confidence 3455665443 34444442 2 23334455555444322223334444444444432221 11222 333355
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCh---hhHHHHHHHHHhcCc
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGV---VTYNILINGLCKKGMIMEADKLLVQMKE-KGCFPDS---TSFNTVIQGFLVKNE 195 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~---~~~~~l~~~~~~~~~ 195 (207)
.|+.+- ++.+.+.|..++. .-.+.|..+ +..|+.+-+.. +.+ .|..++. .-.+ -+...+..|+
T Consensus 193 ~g~~~~----v~~Ll~~gad~n~~d~~G~TpLh~A-~~~g~~~iv~~----Ll~~~gad~~~~d~~g~T-pL~~A~~~g~ 262 (276)
T 4hbd_A 193 HGRVDV----VKALLACEADVNVQDDDGSTALMCA-CEHGHKEIAGL----LLAVPSCDISLTDRDGST-ALMVALDAGQ 262 (276)
T ss_dssp TTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHH----HHTSTTCCTTCCCTTSCC-HHHHHHHHTC
T ss_pred cCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHH----HHhcCCCCCcCcCCCCCC-HHHHHHHcCC
Confidence 666554 4444555655443 233444433 45666554443 444 4544432 2122 2334456677
Q ss_pred hhHHHHHHHh
Q 045498 196 TDRASSFLKK 205 (207)
Q Consensus 196 ~~~a~~~~~~ 205 (207)
.+-+.-++++
T Consensus 263 ~~iv~~Ll~~ 272 (276)
T 4hbd_A 263 SEIASMLYSR 272 (276)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7766666654
No 399
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.62 E-value=30 Score=17.23 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=14.6
Q ss_pred CChhHHHHHHHHHHhCCCCcc
Q 045498 54 NRLKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 54 ~~~~~a~~~~~~m~~~~~~~~ 74 (207)
+++..|+++++.+.+.|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 356677788888877775554
No 400
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=30.50 E-value=58 Score=16.52 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498 126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKK 158 (207)
Q Consensus 126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 158 (207)
.++...+.++-+..|-++....+++..+.+...
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleL 44 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLEL 44 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 401
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=30.47 E-value=1.2e+02 Score=20.00 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 92 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.....+.+.+.... -+-.-.-.+|.++...|++++|.+++..+... +..... ..+.+++.-|--++...
T Consensus 16 ~~~~~~~~~LR~qr--Hdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~ 84 (192)
T 1ixm_A 16 ALTNELIHLLGHSR--HDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFN 84 (192)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHH
Confidence 33444555444331 12222335688889999999999998887763 122222 56677777776666655
Q ss_pred H
Q 045498 172 K 172 (207)
Q Consensus 172 ~ 172 (207)
.
T Consensus 85 ~ 85 (192)
T 1ixm_A 85 W 85 (192)
T ss_dssp G
T ss_pred H
Confidence 4
No 402
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=30.41 E-value=76 Score=17.81 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM 160 (207)
Q Consensus 123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 160 (207)
....+.|.++++.+.+. ....|..++.++...+.
T Consensus 49 ~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCH
Confidence 34445555555555443 23355555555554443
No 403
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=30.27 E-value=61 Score=16.65 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHHHhC
Q 045498 90 GRFSAMALLQTLERD 104 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~ 104 (207)
..++|..+-+.+...
T Consensus 21 cH~EA~tIA~~L~~~ 35 (61)
T 3ph0_C 21 CHQEAASIADWLAQE 35 (61)
T ss_dssp CHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 344455555544443
No 404
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=29.96 E-value=1.1e+02 Score=21.58 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498 154 GLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205 (207)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 205 (207)
.|....++.....++..|... .-.|+......++++|.+.-+-.+|.+.++.
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333444555556666666653 2356777777777777777777777666554
No 405
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.43 E-value=1.3e+02 Score=20.26 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 045498 90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP 143 (207)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 143 (207)
..+.+..+++.+.+.|+--|..--...+....+.+.+ ....+-.++..+|+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 3456778888899998775555555667666552222 4566777888888864
No 406
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=29.43 E-value=92 Score=18.46 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=8.3
Q ss_pred hcCCCHHHHHHHHHHH
Q 045498 121 CRVGRWEEARKKLDQL 136 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~ 136 (207)
++.|++++|.+.+++.
T Consensus 33 Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4455555555555443
No 407
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=29.37 E-value=90 Score=21.94 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI---EVYSLVIDGL 120 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~ 120 (207)
-+...++.|+.+....++.. .+..++. ..-.+.+...+..|+.+-+..++ +.|..++. .-.+. +...
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A 98 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVP-LHNA 98 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCH-HHHH
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcH-HHHH
Confidence 34444567888777777653 2222221 11233455566667765544444 44544322 12222 3334
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVV---TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (207)
+..|+.+ +++.+.+.|..++.. .++.| ...+..|+.+-+. .+.+.|..|+.
T Consensus 99 ~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~ 152 (351)
T 3utm_A 99 CSYGHYE----VTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCS----LLLSHGADPTL 152 (351)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHH----HHHHTTCCTTC
T ss_pred HHCCCHH----HHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCcc
Confidence 5566655 444555556555432 23333 3345667765444 44455655543
No 408
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.04 E-value=2.1e+02 Score=22.47 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=44.4
Q ss_pred hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-CccH--HHHH-HHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNI--EVYS-LVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
..+|.+++.|...+.++.|..+..+..-... .++. ..|. -+-..+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5688899999999999999999988742111 1121 2222 2335566788999999988887765
No 409
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=28.55 E-value=1.1e+02 Score=18.92 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchh--hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELV--TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI---EVYSLVIDGL 120 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~ 120 (207)
.+...++.|+.+.+..+++ .|..++.. .-.+.+...+..|+.+-+..++ +.|..++. ...+ .+...
T Consensus 17 ~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A 87 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLL----KNGADVNAVDHAGMT-PLRLA 87 (169)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHH
T ss_pred hHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCC-HHHHH
Confidence 3444455677655544443 34333211 1123344455566655444333 34433221 1112 23333
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498 121 CRVGRWEEARKKLDQLSEKGLVPGVVT--YNILINGLCKKGMIMEADKLLVQMKEKGCFP 178 (207)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (207)
+..|+.+- ++.+.+.|..++... -...+...+..|+.+-+. .+.+.|..+
T Consensus 88 ~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~ 139 (169)
T 2y1l_E 88 ALFGHLEI----VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE----VLLKNGADV 139 (169)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCT
T ss_pred HHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCC
Confidence 45566543 344444554443221 122333345566665443 344455444
No 410
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.88 E-value=1e+02 Score=18.53 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=38.4
Q ss_pred hHHHHHhhHhhhc---ChhhHHH----HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498 77 TYNPLIHDNWEKQ---GRFSAMA----LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139 (207)
Q Consensus 77 ~~~~ll~~~~~~~---~~~~a~~----~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 139 (207)
++..++..|...- ..+++.+ +|+.+.+..+.|++..--.-+......++++.|.++.-.+...
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4556666553322 2344433 5555566666666544444455557788999999999888764
No 411
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.18 E-value=1.5e+02 Score=20.08 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=41.3
Q ss_pred cHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh-----hhHHHHHHHHHhCCCC
Q 045498 39 DVFVYSSLINGLCT---FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-----FSAMALLQTLERDKYE 107 (207)
Q Consensus 39 ~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~ 107 (207)
+....-.+|+++.| .++++.|+-.+-+|.+.|..|.-..=..++-+.-.-|.- ..|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445556666654 578999999999999988766644444455444444432 2355555556666654
No 412
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=26.86 E-value=92 Score=19.32 Aligned_cols=58 Identities=9% Similarity=0.132 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
+..-+..++..+...-..+.+..+++.+-..+ ....+|...+..+... +....+|+.+
T Consensus 92 ~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--dg~i~~~eF~~~~~~~---~~~~~~F~~~ 149 (172)
T 2znd_A 92 DKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVL---QRLTDIFRRY 149 (172)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTC--SSSEEHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHH---HHHHHHHHHh
Confidence 34444444444333334455555555554321 1233444444444332 3444455544
No 413
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=26.82 E-value=64 Score=20.55 Aligned_cols=106 Identities=9% Similarity=0.003 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQ 135 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 135 (207)
.+.|.++++.+...|..|+...... -...+......++........ -...|..++..+...+++..+ .+++.
T Consensus 51 ~~HA~~l~~~i~~~gG~~~l~~i~~------p~~~~~~~~e~l~~al~~E~~-~~~~~~~l~~~a~~~~D~~~~-~~l~~ 122 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVELQEVKQ------PEQNFKSLLDVFEKTYEHEQF-ITKSINTLVEHMLTHKDYSTF-NFLQW 122 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCCCCC------CCCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHH-HHTHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCC------CCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCChhHH-HHHHH
Confidence 4566677777776665554322110 012223344444443332211 223466666666666665433 22222
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498 136 LSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170 (207)
Q Consensus 136 ~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 170 (207)
+...... ....+..++.-.-+.|....+.-+|++
T Consensus 123 ~l~Eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~ 156 (167)
T 1krq_A 123 YVSEQHE-EEALFRGIVDKIKLIGEHGNGLYLADQ 156 (167)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCSTTTHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhH
Confidence 3322111 233444444444444433333444443
No 414
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.74 E-value=32 Score=23.89 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=9.7
Q ss_pred hcChhhHHHHHHHHHhCCCCc
Q 045498 88 KQGRFSAMALLQTLERDKYEL 108 (207)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~ 108 (207)
.++.+.+...+++....|..|
T Consensus 49 ~gd~~~~~~~~~~al~~g~~~ 69 (258)
T 2i2x_B 49 EGEEDDVVEGLQAAIEAGKDP 69 (258)
T ss_dssp TTCHHHHHHHHHHHHHHSCCT
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 344444555555444444333
No 415
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=26.44 E-value=1e+02 Score=19.03 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=3.6
Q ss_pred hcCChhHHH
Q 045498 52 TFNRLKEAV 60 (207)
Q Consensus 52 ~~~~~~~a~ 60 (207)
..|+.+.+.
T Consensus 11 ~~g~~~~v~ 19 (172)
T 3v30_A 11 AQGELDQLK 19 (172)
T ss_dssp HTTCHHHHH
T ss_pred HcCCHHHHH
Confidence 344443333
No 416
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.37 E-value=82 Score=21.65 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHhcC---------ChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHh
Q 045498 40 VFVYSSLINGLCTFN---------RLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLER 103 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~---------~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 103 (207)
..-|..+..+|.+.| +.+.-..+++..++.|++. =++.|+.+|+--...-+++++.+++..+++
T Consensus 173 l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 173 RAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 344566666666654 2344455555555555421 235666666655556666777777766554
No 417
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=26.29 E-value=1.3e+02 Score=19.32 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHhCCCCcc
Q 045498 56 LKEAVELFDKMVAQGITAE 74 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~ 74 (207)
.+.|.++++.+...|..|.
T Consensus 60 ~~HA~kl~~~i~~rgg~~~ 78 (176)
T 3ka8_A 60 REHAEKFMKYQNKRGGRVV 78 (176)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHcCCCee
Confidence 4556666666665554443
No 418
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=26.08 E-value=1.1e+02 Score=19.92 Aligned_cols=66 Identities=8% Similarity=-0.127 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498 56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE 127 (207)
Q Consensus 56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (207)
.+.|.++++.+...|..|+....... ..+.+....++++...+.... -...++.++..+...+|+.
T Consensus 64 ~~HA~kl~~~i~~rgg~~~l~~i~~p-----~~~~~~~~~e~le~aL~~Ek~-v~~~l~~l~~~a~~~~D~~ 129 (183)
T 2cih_A 64 REHAEKLMKLQNQRGGRIFLQDIQKP-----DCDDWESGLNAMECALHLEKN-VNQSLLELHKLATDKNDPH 129 (183)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCCCCC-----SCSCCCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCccccCCCCCC-----CccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHH
Confidence 45666777777666655543221110 112233444444443322111 2344556666655555543
No 419
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=25.51 E-value=87 Score=21.80 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHhcC---------ChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHh
Q 045498 40 VFVYSSLINGLCTFN---------RLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLER 103 (207)
Q Consensus 40 ~~~~~~ll~~~~~~~---------~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 103 (207)
..-|..+..+|.+.| +.+.-..+++..++.|++. =++.|+.+|+--...-+++++.+++..+++
T Consensus 196 leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 196 EEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp HHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 444566666666654 3344555555556555432 235666666655556666777777666553
No 420
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.86 E-value=44 Score=20.17 Aligned_cols=51 Identities=4% Similarity=0.160 Sum_probs=30.1
Q ss_pred cChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhCCCC
Q 045498 89 QGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLC---RVGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~g~~ 142 (207)
..+++|.+.+..|++.-+. -.+..||..+..+. ..++. .++|..+.+.++.
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 4566777777776654332 24567787776664 23333 4566666666554
No 421
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.23 E-value=66 Score=22.30 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498 114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG 159 (207)
Q Consensus 114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 159 (207)
..+..+ ...|+-+.+.+.+++....|..|.......++.+....|
T Consensus 41 ~~l~~a-l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 41 YPIAKA-IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 334433 446788899999999988887766555555555554443
No 422
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.11 E-value=1.7e+02 Score=19.66 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=44.0
Q ss_pred HHHHHhhHhh---hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhCCCC
Q 045498 78 YNPLIHDNWE---KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-----WEEARKKLDQLSEKGLV 142 (207)
Q Consensus 78 ~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~g~~ 142 (207)
+-.+|+++.+ -.+++.|+-.+-+|.+.| .|.-..-..++.+.-..|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445555544 568889999999999999 7766666666666655554 44566667777777764
No 423
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.08 E-value=3.3e+02 Score=23.15 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcC
Q 045498 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----VTYNILINGLCKKG 159 (207)
Q Consensus 111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~ 159 (207)
.=|..++..|-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 35678889999999999999998888764211122 35677777776554
No 424
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.04 E-value=2.4e+02 Score=21.43 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=19.1
Q ss_pred CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498 36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVA 68 (207)
Q Consensus 36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 68 (207)
+..+......+... ..|+..+++.+++.+..
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 44555556655555 35777777777776653
No 425
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.74 E-value=1.3e+02 Score=18.33 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHhcCChhHHHHHHH
Q 045498 50 LCTFNRLKEAVELFD 64 (207)
Q Consensus 50 ~~~~~~~~~a~~~~~ 64 (207)
.+..|+.+.+..+++
T Consensus 10 A~~~g~~~~v~~ll~ 24 (167)
T 3v31_A 10 LAAQGEMLYLATRIE 24 (167)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 344555544444443
No 426
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=23.64 E-value=2.3e+02 Score=21.08 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498 112 VYSLVIDGLCRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 112 ~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 173 (207)
+|-.++..+....+ .+++..+++.+.+-.+ ++.+.-..|+..+.+.-..++...+.+-|++
T Consensus 25 t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-~~~QiaAfL~Alr~kGet~eEi~g~~~am~~ 87 (377)
T 3r88_A 25 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-RPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87 (377)
T ss_dssp CHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34444444443333 3445555555554322 2333333333334444444444444444444
No 427
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=23.53 E-value=1.1e+02 Score=21.51 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHhhHhhhcChhhHHHHHHH
Q 045498 79 NPLIHDNWEKQGRFSAMALLQT 100 (207)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~ 100 (207)
|.+++-|...|+...|.++++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~r 59 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVK 59 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHH
Confidence 4455555555555555555554
No 428
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.18 E-value=2e+02 Score=21.19 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcchh--hHHHHHhhHhhhcChhhHHHHHH
Q 045498 46 LINGLCTFNRLKEAVELFDKMVAQGITAELV--TYNPLIHDNWEKQGRFSAMALLQ 99 (207)
Q Consensus 46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~ 99 (207)
.+...+..|+.+-+..++ +.|..|+.. ...+.+...+..|+.+-+..+++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 344455677765544444 445544422 22334555666777665555554
No 429
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=22.94 E-value=36 Score=17.44 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=15.7
Q ss_pred cCChhHHHHHHHHHHhCCCCcch
Q 045498 53 FNRLKEAVELFDKMVAQGITAEL 75 (207)
Q Consensus 53 ~~~~~~a~~~~~~m~~~~~~~~~ 75 (207)
.-+++.|...|.+. +..+||+.
T Consensus 32 ~Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TTCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHH
Confidence 34788999999986 44566653
No 430
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.46 E-value=3.7e+02 Score=23.09 Aligned_cols=141 Identities=10% Similarity=0.015 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhCCCCcchhhHH--HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH--HHhcCCCHHHHHHH
Q 045498 57 KEAVELFDKMVAQGITAELVTYN--PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID--GLCRVGRWEEARKK 132 (207)
Q Consensus 57 ~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~ 132 (207)
+++...+..+....- +...... .|-..+...|+.+-+..++..+.+.. +..+...+.. ++.-.|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 455666666655321 1111112 22234456677777778887766542 2233333433 44477888888888
Q ss_pred HHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498 133 LDQLSEKGLVPGVVTYN--ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL 203 (207)
Q Consensus 133 ~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 203 (207)
++.+.... .|....-. ++..+|+..|+......++..+.+. ...+..-...+.-++...|+.+.+.+++
T Consensus 547 i~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 547 ITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88887641 22222222 3345677888988888888888764 2223333333333444455544444443
No 431
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=22.44 E-value=1.3e+02 Score=17.69 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.8
Q ss_pred HHHhcCChhHH
Q 045498 49 GLCTFNRLKEA 59 (207)
Q Consensus 49 ~~~~~~~~~~a 59 (207)
..++.|+.+-+
T Consensus 20 ~A~~~g~~~~v 30 (136)
T 2jab_A 20 EAARAGQDDEV 30 (136)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHhCCHHHH
Confidence 33444554433
No 432
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=22.15 E-value=2e+02 Score=19.79 Aligned_cols=90 Identities=9% Similarity=-0.098 Sum_probs=51.6
Q ss_pred CCccHHHHHHHHHHHhcC-CCHHHHHH-----------HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HH
Q 045498 106 YELNIEVYSLVIDGLCRV-GRWEEARK-----------KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ-MK 172 (207)
Q Consensus 106 ~~~~~~~~~~li~~~~~~-~~~~~a~~-----------~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~ 172 (207)
..|....|...+...+.. |++.++.. +.+.+.+.+..++...|..-|..|. . .+.++...+.. +.
T Consensus 125 ~~p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~-~-ef~~~v~~~~~~ld 202 (248)
T 3no6_A 125 WPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS-T-EMDELVDVFDQLMD 202 (248)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH-H-HTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-H-HHHHHHHHHHHHHH
Confidence 345666787777777776 77766432 2334444433223457888899888 4 44444444433 33
Q ss_pred HcCCCCChhhHHHHHHHHHhcCchh
Q 045498 173 EKGCFPDSTSFNTVIQGFLVKNETD 197 (207)
Q Consensus 173 ~~~~~p~~~~~~~l~~~~~~~~~~~ 197 (207)
+.+...+......+...|.+.-+++
T Consensus 203 ~~~~~~s~~~~~~l~~~F~~a~~lE 227 (248)
T 3no6_A 203 RLTKHCSETEKKEIKENFLQSTIHE 227 (248)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 4344446666777777766654433
No 433
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.85 E-value=2.3e+02 Score=20.45 Aligned_cols=110 Identities=10% Similarity=0.049 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhC---CCCc---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498 92 FSAMALLQTLERD---KYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD 165 (207)
Q Consensus 92 ~~a~~~~~~m~~~---~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 165 (207)
+.|...+..+... ...+ ........+..+.+.-+ -++++.+.+.|+.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 3466666665443 1222 22222333333443333 356777888899988889999999999888899999
Q ss_pred HHHHHHHHcCCCCCh-h--hHHHHHHH----HHhcCchhHHHHHHHh
Q 045498 166 KLLVQMKEKGCFPDS-T--SFNTVIQG----FLVKNETDRASSFLKK 205 (207)
Q Consensus 166 ~~~~~m~~~~~~p~~-~--~~~~l~~~----~~~~~~~~~a~~~~~~ 205 (207)
.+++.+...|..... . ...+++.. ....+++++..++++.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~ 311 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQN 311 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHc
Confidence 999999988654331 1 12222222 2335788888887764
No 434
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.82 E-value=2.5e+02 Score=20.92 Aligned_cols=91 Identities=9% Similarity=-0.019 Sum_probs=55.5
Q ss_pred HHHHhhHhhhcCh---hhHHHHHHHHHhCC----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498 79 NPLIHDNWEKQGR---FSAMALLQTLERDK----YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL 151 (207)
Q Consensus 79 ~~ll~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 151 (207)
..++...|..|+. +.|.+.|+.....+ ++|+... .+...-.+ ..++-..+++...+. .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 4566666777664 45778888765442 5555422 11111122 234445556666654 355556788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498 152 INGLCKKGMIMEADKLLVQMKEKGC 176 (207)
Q Consensus 152 i~~~~~~~~~~~a~~~~~~m~~~~~ 176 (207)
+.+++...+.....++++......+
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDK 298 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCC
Confidence 8888888899988888888776553
No 435
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.54 E-value=1.2e+02 Score=17.22 Aligned_cols=50 Identities=18% Similarity=0.059 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHH
Q 045498 122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL-----CKKGMIMEADKLLVQMKE 173 (207)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~m~~ 173 (207)
..|++-+|.++++..=.....|....|..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3377777777777665554333445555555433 245665 6666666544
No 436
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.48 E-value=2.6e+02 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=14.0
Q ss_pred HHHHHHhcCchhHHHHHHH
Q 045498 186 VIQGFLVKNETDRASSFLK 204 (207)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~ 204 (207)
....++..|+++.|.++++
T Consensus 342 YA~lLA~qG~l~~A~~yL~ 360 (399)
T 2pm7_A 342 FINLTTSTGNFELATEFLN 360 (399)
T ss_dssp HHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 3445677888888888875
No 437
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.36 E-value=80 Score=20.02 Aligned_cols=51 Identities=4% Similarity=0.160 Sum_probs=29.8
Q ss_pred cChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhCCCC
Q 045498 89 QGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCR---VGRWEEARKKLDQLSEKGLV 142 (207)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~g~~ 142 (207)
..+++|.+.+..|++.-+. -.+..||.++..+.. .++. .++|+.+...++.
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 4566777777777654332 144578887766642 2333 5566666666554
No 438
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.89 E-value=1.7e+02 Score=18.65 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498 61 ELFDKMVAQGITAELVTYNPLIHDNWEK 88 (207)
Q Consensus 61 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 88 (207)
+.+.++.++|-|-|...-|-||+.....
T Consensus 20 ~~L~~Lirs~~PeDL~~AN~LiK~m~~~ 47 (158)
T 1naf_A 20 KMLARLLKSSHPEDLRAANKLIKEMVQE 47 (158)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhcc
Confidence 4677888888777888888888877753
No 439
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=20.52 E-value=1.8e+02 Score=18.84 Aligned_cols=108 Identities=8% Similarity=-0.019 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 045498 55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD 134 (207)
Q Consensus 55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 134 (207)
..+.|.++++.+...|..|....... -...+....+.++...... .--...++.++..+...+|+.. ..+++
T Consensus 59 E~~HA~~l~~~i~~~Gg~~~l~~i~~------p~~~~~~~~e~le~aL~~E-k~v~~~l~~l~~la~~~~D~~t-~~fLe 130 (184)
T 3qz3_A 59 EMQHMQRLFTYVSETGALPILGAIAA------PRHDFASLGEVFRETYQHE-QKITQQINKLAHVAFTSQDYST-FNFLQ 130 (184)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCC------CCCCCSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccCCCCC------cccCcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHhH-HHHHH
Confidence 34667777777777776665321100 0123334444444433321 1133456666666666666543 33333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498 135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171 (207)
Q Consensus 135 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 171 (207)
.+.+..+. .......++.-+.+.|.-..+.-+|++.
T Consensus 131 ~fl~EQve-~~~~l~~~l~~l~~~g~~~~~~~~~D~~ 166 (184)
T 3qz3_A 131 WYVAEQHE-EEKLFKGILDKLELVGEDGKALFFIDKD 166 (184)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCCCcchhHHhHH
Confidence 44433222 3445555565555666545555556554
No 440
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=20.29 E-value=1.6e+02 Score=18.14 Aligned_cols=8 Identities=0% Similarity=-0.193 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 045498 128 EARKKLDQ 135 (207)
Q Consensus 128 ~a~~~~~~ 135 (207)
.+..+++.
T Consensus 114 ~~~~~~~~ 121 (173)
T 1alv_A 114 LYSMIIRR 121 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 441
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=20.21 E-value=1.2e+02 Score=18.91 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 045498 112 VYSLVIDGLCRVGRWEEARKKLDQLSE-KGLVP---GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187 (207)
Q Consensus 112 ~~~~li~~~~~~~~~~~a~~~~~~~~~-~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 187 (207)
....++..+-.. ++.+.++.+...+ .|..| ++.++...+....+.|-++.. +.+..|.... ...+.+|+...
T Consensus 42 ~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~R-N~tvH~Y~e~~ 117 (146)
T 1jog_A 42 LIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMR-NITSHTYDQEK 117 (146)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHH-TTGGGTTSHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHh-hHhcccccHhh
Confidence 344444444322 4555666654443 46553 377888888888899988666 4555555431 23566666543
Done!