Citrus Sinensis ID: 045499


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
MCFLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEYK
cccccccccccEEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccHHHHccccccccccccccEEEEEEEc
cccccHHcccEEEEccccccccccccccccHHHHHHHHHHHcccccEEEEEEEEEEEEcccccccccccccccccccHHHcHcHHHHHHHHHHHHHHHHccccccccEEEEEEc
mcflsrkdcstvvYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCClynhlgiddgispsasrtfhfkeisksnvvgDMHLILENILRACIglapennvileyk
mcflsrkdcstvvyantWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRaciglapennvileyk
MCFLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEYK
**FLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVIL***
********CSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISP**************NVVGDMHLILENILRACIGLAPENNVILEYK
MCFLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEYK
*CFLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGI****SPS****FHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEYK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCFLSRKDCSTVVYANTWRSNYVILGLNDTMENLLAAALEKIEADSQWKTNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query114 2.2.26 [Sep-21-2011]
O64437 510 Inositol-3-phosphate synt yes no 0.473 0.105 0.482 3e-06
Q9LW96 510 Inositol-3-phosphate synt N/A no 0.473 0.105 0.482 4e-06
Q9SSV4 510 Inositol-3-phosphate synt N/A no 0.473 0.105 0.482 4e-06
P42803510 Inositol-3-phosphate synt N/A no 0.254 0.056 0.677 4e-06
Q9FYV1510 Inositol-3-phosphate synt N/A no 0.254 0.056 0.677 4e-06
Q40271512 Inositol-3-phosphate synt N/A no 0.254 0.056 0.677 4e-06
Q96348510 Inositol-3-phosphate synt N/A no 0.254 0.056 0.677 4e-06
Q9LX12510 Probable inositol 3-phosp yes no 0.254 0.056 0.645 6e-06
O65195 510 Inositol-3-phosphate synt N/A no 0.473 0.105 0.482 6e-06
Q41107 511 Inositol-3-phosphate synt N/A no 0.473 0.105 0.482 6e-06
>sp|O64437|INO1_ORYSJ Inositol-3-phosphate synthase OS=Oryza sativa subsp. japonica GN=INO1 PE=2 SV=2 Back     alignment and function desciption
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 58  YNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEY 113
           YNHLG +DG++ SA +TF  KEISKSNVV DM  +  N +   +G  P++ V+++Y
Sbjct: 335 YNHLGNNDGMNLSAPQTFRSKEISKSNVVDDM--VSSNAILYELGEHPDHVVVIKY 388





Oryza sativa subsp. japonica (taxid: 39947)
EC: 5EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|Q9LW96|INO1_TOBAC Inositol-3-phosphate synthase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q9SSV4|INO1_NICPA Inositol-3-phosphate synthase OS=Nicotiana paniculata GN=INPS1 PE=2 SV=1 Back     alignment and function description
>sp|P42803|INO1_SPIPO Inositol-3-phosphate synthase OS=Spirodela polyrrhiza GN=TUR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FYV1|INO1_SESIN Inositol-3-phosphate synthase OS=Sesamum indicum PE=2 SV=1 Back     alignment and function description
>sp|Q40271|INO1_MESCR Inositol-3-phosphate synthase OS=Mesembryanthemum crystallinum PE=2 SV=1 Back     alignment and function description
>sp|Q96348|INO1_BRANA Inositol-3-phosphate synthase OS=Brassica napus PE=2 SV=2 Back     alignment and function description
>sp|Q9LX12|INO3_ARATH Probable inositol 3-phosphate synthase isozyme 3 OS=Arabidopsis thaliana GN=At5g10170 PE=2 SV=1 Back     alignment and function description
>sp|O65195|INO1_HORVU Inositol-3-phosphate synthase OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|Q41107|INO1_PHAVU Inositol-3-phosphate synthase OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
346969907 503 inositol-3-phosphate synthase [Verticill 0.850 0.192 0.341 9e-06
351699762 418 Inositol-3-phosphate synthase 1 [Heteroc 0.956 0.260 0.328 2e-05
93115136 518 myo-inositol-1 phosphate synthase-like [ 0.850 0.187 0.344 3e-05
384245885 507 myo-inositol-1-phosphate synthase, parti 0.473 0.106 0.5 4e-05
159490574 507 myo-inositol-1-phosphate synthase [Chlam 0.473 0.106 0.482 5e-05
302830640 508 hypothetical protein VOLCADRAFT_103123 [ 0.473 0.106 0.482 5e-05
145342099 529 predicted protein [Ostreococcus lucimari 0.473 0.102 0.482 7e-05
168020111 512 predicted protein [Physcomitrella patens 0.473 0.105 0.464 9e-05
168055751 511 predicted protein [Physcomitrella patens 0.473 0.105 0.464 9e-05
395513207 661 PREDICTED: inositol-3-phosphate synthase 0.473 0.081 0.482 0.0001
>gi|346969907|gb|EGY13359.1| inositol-3-phosphate synthase [Verticillium dahliae VdLs.17] Back     alignment and taxonomy information
 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 15  ANTWRSNYVILGLNDTMENLLAA---ALEKIEADSQWKT---------------NLVCCC 56
           ANT R   +I G+NDT +NLL A     E++   + +                  L    
Sbjct: 260 ANTERYAELIAGVNDTADNLLKAIEQGHEEVSPSTVFSVAMKSALVDFLINAGIKLTSIA 319

Query: 57  LYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEY 113
            YNHLG +DG + S+ + F  KEISKSNVV DM  +  N +    G  P++ V+++Y
Sbjct: 320 SYNHLGNNDGKNLSSQKQFRSKEISKSNVVDDM--VEANTVLYKEGEHPDHCVVIKY 374




Source: Verticillium dahliae VdLs.17

Species: Verticillium dahliae

Genus: Verticillium

Family: Plectosphaerellaceae

Order: Glomerellales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|351699762|gb|EHB02681.1| Inositol-3-phosphate synthase 1 [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|93115136|gb|ABE98241.1| myo-inositol-1 phosphate synthase-like [Oreochromis mossambicus] Back     alignment and taxonomy information
>gi|384245885|gb|EIE19377.1| myo-inositol-1-phosphate synthase, partial [Coccomyxa subellipsoidea C-169] Back     alignment and taxonomy information
>gi|159490574|ref|XP_001703248.1| myo-inositol-1-phosphate synthase [Chlamydomonas reinhardtii] gi|158280172|gb|EDP05930.1| myo-inositol-1-phosphate synthase [Chlamydomonas reinhardtii] Back     alignment and taxonomy information
>gi|302830640|ref|XP_002946886.1| hypothetical protein VOLCADRAFT_103123 [Volvox carteri f. nagariensis] gi|300267930|gb|EFJ52112.1| hypothetical protein VOLCADRAFT_103123 [Volvox carteri f. nagariensis] Back     alignment and taxonomy information
>gi|145342099|ref|XP_001416131.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576355|gb|ABO94423.1| predicted protein [Ostreococcus lucimarinus CCE9901] Back     alignment and taxonomy information
>gi|168020111|ref|XP_001762587.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686320|gb|EDQ72710.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|168055751|ref|XP_001779887.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668700|gb|EDQ55302.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|395513207|ref|XP_003760820.1| PREDICTED: inositol-3-phosphate synthase 1 [Sarcophilus harrisii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
TAIR|locus:2060364 510 MIPS2 "myo-inositol-1-phosphat 0.473 0.105 0.482 3.1e-06
TAIR|locus:2184153 510 MIPS3 "myo-inositol-1-phosphat 0.473 0.105 0.482 6.5e-06
TAIR|locus:2135297 511 MIPS1 "D-myo-Inositol 3-Phosph 0.473 0.105 0.482 3.1e-06
DICTYBASE|DDB_G0285505 511 ino1 "inositol-3-phosphate syn 0.473 0.105 0.464 3.8e-10
UNIPROTKB|B7Z3K3 356 ISYNA1 "Inositol-3-phosphate s 0.473 0.151 0.446 1.4e-09
UNIPROTKB|G3V1R9 408 ISYNA1 "Myo-inositol 1-phospha 0.473 0.132 0.446 2.2e-09
UNIPROTKB|Q9NPH2 558 ISYNA1 "Inositol-3-phosphate s 0.473 0.096 0.446 5.3e-09
UNIPROTKB|E2RJW5 612 ISYNA1 "Uncharacterized protei 0.473 0.088 0.428 1.8e-08
UNIPROTKB|Q2NL29 557 ISYNA1 "Inositol-3-phosphate s 0.473 0.096 0.428 2.3e-08
SGD|S000003689 533 INO1 "Inositol-3-phosphate syn 0.491 0.105 0.357 1.1e-07
TAIR|locus:2060364 MIPS2 "myo-inositol-1-phosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 117 (46.2 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 27/56 (48%), Positives = 38/56 (67%)

Query:    58 YNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEY 113
             YNHLG +DG++ SA +TF  KEISKSNVV DM  +  N +    G  P++ V+++Y
Sbjct:   335 YNHLGNNDGMNLSAPQTFRSKEISKSNVVDDM--VASNGILFEPGEHPDHVVVIKY 388


GO:0000166 "nucleotide binding" evidence=IEA
GO:0004512 "inositol-3-phosphate synthase activity" evidence=IEA;IGI;ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006021 "inositol biosynthetic process" evidence=IEA;ISS
GO:0008654 "phospholipid biosynthetic process" evidence=IEA;ISS
GO:0009733 "response to auxin stimulus" evidence=TAS
GO:0016036 "cellular response to phosphate starvation" evidence=TAS
GO:0009408 "response to heat" evidence=IEP
GO:0009644 "response to high light intensity" evidence=IEP
GO:0042542 "response to hydrogen peroxide" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA;IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IMP
GO:0051607 "defense response to virus" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2184153 MIPS3 "myo-inositol-1-phosphate synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135297 MIPS1 "D-myo-Inositol 3-Phosphate Synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285505 ino1 "inositol-3-phosphate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z3K3 ISYNA1 "Inositol-3-phosphate synthase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1R9 ISYNA1 "Myo-inositol 1-phosphate synthase A1, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NPH2 ISYNA1 "Inositol-3-phosphate synthase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJW5 ISYNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL29 ISYNA1 "Inositol-3-phosphate synthase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
SGD|S000003689 INO1 "Inositol-3-phosphate synthase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

No confident hit detected by STRING


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
PLN02438 510 PLN02438, PLN02438, inositol-3-phosphate synthase 8e-10
PLN02438510 PLN02438, PLN02438, inositol-3-phosphate synthase 4e-09
pfam01658108 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphat 0.001
>gnl|CDD|178057 PLN02438, PLN02438, inositol-3-phosphate synthase Back     alignment and domain information
 Score = 54.4 bits (131), Expect = 8e-10
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 58  YNHLGIDDGISPSASRTFHFKEISKSNVVGDM 89
           YNHLG +DG++ SA +TF  KEISKSNVV DM
Sbjct: 335 YNHLGNNDGMNLSAPQTFRSKEISKSNVVDDM 366


Length = 510

>gnl|CDD|178057 PLN02438, PLN02438, inositol-3-phosphate synthase Back     alignment and domain information
>gnl|CDD|145021 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 114
KOG0693 512 consensus Myo-inositol-1-phosphate synthase [Lipid 100.0
PLN02438 510 inositol-3-phosphate synthase 100.0
PF01658112 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; 99.78
COG1260362 INO1 Myo-inositol-1-phosphate synthase [Lipid meta 99.61
TIGR03450351 mycothiol_INO1 inositol 1-phosphate synthase, Acti 99.6
PF07994295 NAD_binding_5: Myo-inositol-1-phosphate synthase; 98.78
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=5.6e-48  Score=328.87  Aligned_cols=107  Identities=40%  Similarity=0.515  Sum_probs=100.3

Q ss_pred             CCCCeEEEE-ecccceeccccCCchhHHHHHHHHHHh------------------cC------------c----------
Q 045499            5 SRKDCSTVV-YANTWRSNYVILGLNDTMENLLAAALE------------------KI------------E----------   43 (114)
Q Consensus         5 ~~~drvvvl-tAnTEry~~~~~gvndT~enll~ai~e------------------~v------------~----------   43 (114)
                      +++|+|||+ |||||||++++||+|||+|||+++|+.                  ++            |          
T Consensus       220 ~~ldkViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~EisPStifA~AsilEg~~yiNGSPQNTfVPGlielA~~~~  299 (512)
T KOG0693|consen  220 NKLDKVIVLWTANTERYSNVIPGLNDTAENLLESIEKDESEISPSTIFAIASILEGCPYINGSPQNTFVPGLIELAERHN  299 (512)
T ss_pred             cCCceEEEEEecCcceeeccccccchHHHHHHHHHhcCccccChHHHHHHHHHHcCCCcccCCCccccchhHHHHHHHhC
Confidence            579999999 999999999999999999999999953                  22            2          


Q ss_pred             ---cCCCce------------------eeeeeEEEeEeeccCCCCCCCcccccchhhhhhhhhhhhhhhhhhhhhhhccC
Q 045499           44 ---ADSQWK------------------TNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIG  102 (114)
Q Consensus        44 ---~g~d~K------------------~k~~~i~SyNhLGNnDG~nLs~p~~F~sKeiSKs~Vvddmv~~~~~ly~~~~~  102 (114)
                         +|+|||                  +||+||+||||||||||+|||+|+||||||||||+|+|||+++|..||.+  |
T Consensus       300 vfigGDDfKSGQTK~KSvlvdFLVgaGiKp~SIvSYNHLGNNDG~NLSap~qFRSKEISKSnVvDDmv~SN~iLy~p--g  377 (512)
T KOG0693|consen  300 VFIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQQFRSKEISKSNVVDDMVASNGILYEP--G  377 (512)
T ss_pred             ceeccccccccchhHHHHHHHHHhccCCCceeEeeeccccCCCcccccchhhhhhhhcchhhhhHHHHhcCCcccCC--C
Confidence               478888                  39999999999999999999999999999999999999999999999999  9


Q ss_pred             CCCcceEEEee
Q 045499          103 LAPENNVILEY  113 (114)
Q Consensus       103 ~~~dH~V~I~Y  113 (114)
                      ++|||||+|||
T Consensus       378 e~pDH~vVIKY  388 (512)
T KOG0693|consen  378 EHPDHCVVIKY  388 (512)
T ss_pred             CCCCeEEEEEe
Confidence            99999999999



>PLN02438 inositol-3-phosphate synthase Back     alignment and domain information
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Back     alignment and domain information
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type Back     alignment and domain information
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
1vko_A 537 Crystal Structure Of Inositol-3-Phosphate Synthase 7e-05
1jkf_A 533 Holo 1l-Myo-Inositol-1-Phosphate Synthase Length = 2e-04
1la2_A 533 Structural Analysis Of Saccharomyces Cerevisiae Myo 3e-04
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase (Ce21227) From Caenorhabditis Elegans At 2.30 A Resolution Length = 537 Back     alignment and structure

Iteration: 1

Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats. Identities = 20/32 (62%), Positives = 24/32 (75%) Query: 58 YNHLGIDDGISPSASRTFHFKEISKSNVVGDM 89 YNHLG +DG + S +R F KEISKS+VV DM Sbjct: 353 YNHLGNNDGKNLSEARQFRSKEISKSSVVDDM 384
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase Length = 533 Back     alignment and structure
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo- Inositol Phosphate Synthase Length = 533 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
1vko_A537 Inositol-3-phosphate synthase; CE21227, structural 2e-05
1p1j_A533 Inositol-3-phosphate synthase; 1L-MYO-inositol 1-p 3e-05
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3 Length = 537 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 93  LENILRACIGLAPENNVILEYK 114
           L  ++ A  G   + ++ +E+ 
Sbjct: 505 LTKLVTALAGFPSDTDMQIEFF 526


>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A* Length = 533 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
1p1j_A 533 Inositol-3-phosphate synthase; 1L-MYO-inositol 1-p 100.0
1vko_A 537 Inositol-3-phosphate synthase; CE21227, structural 100.0
3qvs_A392 MIPS, MYO-inositol-1-phosphate synthase (INO1); NA 99.97
1vjp_A394 MYO-inositol-1-phosphate synthase-related protein; 99.91
3cin_A394 MYO-inositol-1-phosphate synthase-related protein; 99.91
1gr0_A367 Inositol-3-phosphate synthase; isomerase, oxidored 99.79
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-37  Score=266.79  Aligned_cols=109  Identities=36%  Similarity=0.463  Sum_probs=101.2

Q ss_pred             CCCCeEEEE-ecccceeccccCCchhHHHHHHHHHHhc------------------C------------c----------
Q 045499            5 SRKDCSTVV-YANTWRSNYVILGLNDTMENLLAAALEK------------------I------------E----------   43 (114)
Q Consensus         5 ~~~drvvvl-tAnTEry~~~~~gvndT~enll~ai~e~------------------v------------~----------   43 (114)
                      .++|||||| |||||||+++.||+|||+|+|++||+++                  +            |          
T Consensus       234 ~~ldrvVVlwtAsTE~~~~~~~g~~~t~~~l~~ai~~~~~eispS~~YA~AAl~aG~~fIN~sP~~t~~P~~~elae~~g  313 (533)
T 1p1j_A          234 NALDKVIVLWTANTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEG  313 (533)
T ss_dssp             TTCSCEEEEECSCCCCCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHT
T ss_pred             cCCCeEEEEeCcCccCCCCCccccccCHHHHHHHHhcCCccCChHHHHHHHHHhcCCceeecCCcccCCHHHHHHHHHhC
Confidence            478999999 9999999999999999999999999753                  1            1          


Q ss_pred             ---cCCCcee------------------eeeeEEEeEeeccCCCCCCCcccccchhhhhhhhhhhhhhhhhhhhhhhccC
Q 045499           44 ---ADSQWKT------------------NLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIG  102 (114)
Q Consensus        44 ---~g~d~K~------------------k~~~i~SyNhLGNnDG~nLs~p~~F~sKeiSKs~Vvddmv~~~~~ly~~~~~  102 (114)
                         +|+|||+                  |+.+|+||||||||||+||++|++|+||||||++||+||+++|..||++..|
T Consensus       314 vpI~GDD~KSGqT~lksvLa~~l~~RGlkv~~~~s~N~lGN~Dg~NL~~p~~f~SKeiSKs~vV~dil~~~~~ly~~~~G  393 (533)
T 1p1j_A          314 TFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLG  393 (533)
T ss_dssp             CCEEESSBCCSHHHHHHHHHHHHHHTTCEEEEEEEEEEECSHHHHHHTSHHHHHHHHHHHHHTTHHHHHTCTTTSBTTTB
T ss_pred             CceeccccccCCchhHHHHHHHHHHcCCceeEEEEEEeccCcchhhhCCHhhhhhhhhHHHHHHHHHHhccccccccccC
Confidence               4899994                  9999999999999999999999999999999999999999999999987667


Q ss_pred             CCCcceEEEee
Q 045499          103 LAPENNVILEY  113 (114)
Q Consensus       103 ~~~dH~V~I~Y  113 (114)
                      +++||+|+|+|
T Consensus       394 ~~~dh~V~IdY  404 (533)
T 1p1j_A          394 KKVDHCIVIKY  404 (533)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCCCCceEEee
Confidence            89999999999



>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3 Back     alignment and structure
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding rossmann fold, L-MYO-inositol 1-phosphate syntha isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus} PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A* Back     alignment and structure
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A* Back     alignment and structure
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8} Back     alignment and structure
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 114
d1p1ja1410 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phospha 1e-07
d1vkoa1397 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosph 1e-06
d1vkoa2114 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synt 7e-05
d1p1ja2115 d.81.1.3 (A:323-437) Myo-inositol 1-phosphate synt 1e-04
d1u1ia2105 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synt 0.001
d1vjpa2107 d.81.1.3 (A:210-316) Hypothetical protein TM1419 { 0.003
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 410 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 93  LENILRACIGLAPENNVILEYK 114
           LEN LR  IGL  +N +  E +
Sbjct: 387 LENFLRLLIGLPSQNELRFEER 408


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 397 Back     information, alignment and structure
>d1vkoa2 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 114 Back     information, alignment and structure
>d1p1ja2 d.81.1.3 (A:323-437) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 115 Back     information, alignment and structure
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 Back     information, alignment and structure
>d1vjpa2 d.81.1.3 (A:210-316) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
d1p1ja2115 Myo-inositol 1-phosphate synthase {Baker's yeast ( 99.9
d1vkoa2114 Myo-inositol 1-phosphate synthase {Caenorhabditis 99.87
d1p1ja1410 Myo-inositol 1-phosphate synthase {Baker's yeast ( 99.82
d1u1ia2105 Myo-inositol 1-phosphate synthase {Archaeoglobus f 99.74
d1vjpa2107 Hypothetical protein TM1419 {Thermotoga maritima [ 99.67
d1gr0a2111 Myo-inositol 1-phosphate synthase {Mycobacterium t 99.64
d1vkoa1397 Myo-inositol 1-phosphate synthase {Caenorhabditis 99.43
d1u1ia1287 Myo-inositol 1-phosphate synthase {Archaeoglobus f 98.68
d1vjpa1275 Hypothetical protein TM1419 {Thermotoga maritima [ 98.5
>d1p1ja2 d.81.1.3 (A:323-437) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Myo-inositol 1-phosphate synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90  E-value=1.9e-25  Score=160.06  Aligned_cols=64  Identities=33%  Similarity=0.511  Sum_probs=62.7

Q ss_pred             eeeeeEEEeEeeccCCCCCCCcccccchhhhhhhhhhhhhhhhhhhhhhhccCCCCcceEEEee
Q 045499           50 TNLVCCCLYNHLGIDDGISPSASRTFHFKEISKSNVVGDMHLILENILRACIGLAPENNVILEY  113 (114)
Q Consensus        50 ~k~~~i~SyNhLGNnDG~nLs~p~~F~sKeiSKs~Vvddmv~~~~~ly~~~~~~~~dH~V~I~Y  113 (114)
                      +|+.+|+|||||||+||+||++|++|+|||+||++||++|+++++.||++.+|++|+|+|+|.|
T Consensus        19 lkv~~~~s~NilGN~Dg~nL~~~~~~~sK~~SKs~vv~~il~~~~~l~~~~~~~~~~h~v~i~Y   82 (115)
T d1p1ja2          19 IKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKY   82 (115)
T ss_dssp             CEEEEEEEEEEECSHHHHHHTSHHHHHHHHHHHHHTTHHHHHTCTTTSBTTTBCCCEEEEEEEE
T ss_pred             CcceEEEEEEecCCcchhhhCCHHHHHhHHHHHHHHHHHHHcccccccccccCCCCceEEeeee
Confidence            6999999999999999999999999999999999999999999999999989999999999999



>d1vkoa2 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vjpa2 d.81.1.3 (A:210-316) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure