BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045501
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICR 319
A +N KD+ GRT LH AA+ E++ L+SKGA + + SD +T + + R
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQT 313
A +N KD+ GRT LH AA+ E++ L+SKGA + SD +T
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 105
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQT 313
A +N D+ GRT LH AA+ E++ L+SKGA + SD +T
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICR 319
N KD+ GRT LH AA E++ LLSKGA + + SD +T + + R
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAV 315
N KD+ GRT LH AA E++ LLSKGA + SD +T +
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAV 315
N D+ GRT LH AA E++ LLSKGA + SD +T +
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICR 319
A +N KD+ GRT LH AA EV+ L+SKGA + + SD +T + + R
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQT 313
A +N KD+ GRT LH AA EV+ L+SKGA + SD +T
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQT 313
A +N D+ GRT LH AA EV+ L+SKGA + SD +T
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 72
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICR 319
N KD+ G+T LH+AA EV+ LLS+GA + + SD +T + + R
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
N KD+ G+T LH+AA EV+ LLS+GA + SD +T + +
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
A +N D+ G+T LH+AA EV+ LLS+GA + SD +T + +
Sbjct: 28 ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 77
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
EVL + A +N KD+ G T LH+AARR E++ LL GA + + S T + + +
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL + A +N D+ G T LH+AA+R E++ LL GA + +TA I
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVTRRKDYL 328
A +N KD GRT LH+AAR EV+ LL GA + + +T + + R +L
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGHL 81
Query: 329 EATKQGQETNKD 340
E K E D
Sbjct: 82 EVVKLLLEAGAD 93
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
A +N KD GRT LH+AAR EV+ LL GA + + +T + + R
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
A +N KD GRT LH+AAR EV+ LL GA
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 278 GRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVTRRKDYLEATKQGQET 337
GRT LH+AAR EV+ LL GA + + +T + + R +LE K E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEA 57
Query: 338 NKD 340
D
Sbjct: 58 GAD 60
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
A +N KD GRT LH+AAR EV+ LL GA + + +T + + R
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
A +N KD GRT LH+AAR EV+ LL GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 278 GRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVTRRKDYLEATKQGQET 337
GRT LH+AAR EV+ LL GA + + +T + + R +LE K E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEA 57
Query: 338 NKD 340
D
Sbjct: 58 GAD 60
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
EVL A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
+L + A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
EVL A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
+L + A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
EVL A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
+L + A +N KD G T LH+AAR E++ LL GA + D T + + R
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N KD G T LH+AAR E++ LL GA + +TA I
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 274 KDARGRTVLHVAARRNEPEVMVTLLSKG 301
KDA G T LH+AA++ EV+ LLS G
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 15 IVVEGKSVAVNRSVLSELSQFFRRLFN 41
I+VEG+ +RSVL+ SQ+F++LF
Sbjct: 40 ILVEGREFPTHRSVLAACSQYFKKLFT 66
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 15 IVVEGKSVAVNRSVLSELSQFFRRLF 40
I+VEG+ +RSVL+ SQ+F++LF
Sbjct: 30 ILVEGREFPTHRSVLAACSQYFKKLF 55
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 166 QRIAKSNLDNVCLEKELPDEVSSEIKSLRVKSNQESEANTKEVDPLREKTVRR 218
Q + K+ +DNV LE++ PDEV I++ ++ VD LRE V R
Sbjct: 19 QLLHKAGIDNVILERQTPDEVLGRIRAGVLEQGM--------VDLLREAGVDR 63
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 10 WLEAEIVVEGKSVAVNRSVLSELSQFFRRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYE 69
+ + +VV+G + +R+VL+ S +FR LFN N S P V +
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN--NSRSAVVELP----------AAVQPQ 80
Query: 70 AFNDILHRLYTGKL 83
+F IL YTG+L
Sbjct: 81 SFQQILSFCYTGRL 94
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 271 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVTRR--KDYL 328
L+ K A G T LH AA N+P+ + LL A +TA+ I R+ + ++ L
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 329 EATKQG 334
E + G
Sbjct: 279 EQAQAG 284
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 271 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
L+ K A G T LH AA N+P+ + LL A +TA+ I R+
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
A +N + G T LH+AA+ E++ LL+KGA + + D T + ++
Sbjct: 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
+L + A +N D +G T LH+AA PE++ LL GA + +D T + +
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
A +N +DA G T LH+AA R E++ LL GA + +TA I
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 255 CNPKVFKEVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+P++ EVL A +N +D G T LH+AA E++ LL GA
Sbjct: 58 GHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL + A +N KD G T LH+AA R E++ LL GA + +TA I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 7 KETWLEAEIVVEGKSVAVNRSVLSELSQFFRRLFNLRNDGSVSEGKPKYLLTDLVPHGKV 66
K+ + I VEG+ +RSVL+ S +F + DG ++ P+ +V
Sbjct: 26 KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPE----------EV 75
Query: 67 GYEAFNDILHRLYTGKL---KAPPPEVSACVDDACSHD 101
+ F ++ YT KL K EV CV+ H+
Sbjct: 76 TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN 113
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRV 321
EVL + A +N D+ G T LH+AA R EV+ LL GA + + T + + +
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 322 TRRKDYLEATKQGQETN 338
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL + A +N D G T LH+AA E++ LL GA + +TA I
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 267 DLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 301
DLA LN ++ +T LH+A N+PE+ LL G
Sbjct: 34 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.6 bits (70), Expect = 0.85, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A +N KD G T LH+AAR E++ LL GA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 267 DLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 301
DLA LN ++ +T LH+A N+PE+ LL G
Sbjct: 31 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 65
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 166 QRIAKSNLDNVCLEKELPDEVSSEIKSLRVKSNQESEANTKEVDPLREKTVRR 218
Q + K+ +DNV LE++ PD V IK+ ++ VD LRE V R
Sbjct: 19 QLLHKAGIDNVILERQTPDYVLGRIKAGVLEQGM--------VDLLREAGVDR 63
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
A +N D +G T LH+AA + E++ LL GA + +D T + +
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
EVL + A +N D G T LH+AA+R E++ LL GA
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A +N +D G T LH+AAR E++ LL GA
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A + KD G T LH+AAR EV+ LL GA
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRR 320
EVL + A +N D G T LH+AA E++ LL GA + +D T + + +
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N D G T LH+AA+ E++ LL GA + +TA I
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A + KD G T LH+AAR EV+ LL GA
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRV 321
+L + A +N D G T LH+AA+R E++ LL GA + + S +T + + V
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N D+ GRT LH+AA E++ LL GA + +TA I
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 7 KETWLEAEIVVEGKSVAVNRSVLSELSQFFRRLFNLRNDGSVSEGKPKYLLTDLVPHGKV 66
K+ + ++VEG+ +RSVL+ S +F + D ++ P+ +V
Sbjct: 33 KDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPE----------EV 82
Query: 67 GYEAFNDILHRLYTGKL---KAPPPEVSACVDDACSHD 101
+ F ++ YT KL K EV CV+ H+
Sbjct: 83 TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN 120
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
EVL A +N D G T LH+AA R E++ LL GA
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRV 321
EVL A ++ D G T LH+AA E++ LL GA + SD T + +
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL----HL 119
Query: 322 TRRKDYLEAT----KQGQETN 338
+ YLE K G + N
Sbjct: 120 AAKWGYLEIVEVLLKHGADVN 140
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL + A +N D+ G T LH+AA+ E++ LL GA + +TA I
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N +D GRT LH+AA E++ LL GA + +TA I
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A +N D G T LH+AA+R E++ LL GA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 272 NLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVTR 323
NL G T LH+AAR E ++ LL K A + T T + + + +
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
Length = 417
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 145 VIPILVAALHCQLNQLRSVCIQRIAKSNLDNVCLEKEL 182
VIP+L+A C L +C Q + KS +++V + EL
Sbjct: 127 VIPMLIALWKCMLASETDICDQEVLKSIMNSVIAKFEL 164
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 271 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+N KD G + LH+AA E++ LL KGA
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N KD G T LH+AA E++ LL GA + +TA I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A +N D G T LH+AA+R E++ LL GA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL A +N D GRT LH+AA E++ LL GA + +TA I
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 271 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+N KD G + LH+AA E++ LL KGA
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 262 EVLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
EVL + A +N D G T LH+AA E++ LL GA + +TA I
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAICRRVT 322
+L + A +N D G T LH+AA E++ LL GA + T + +T + +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA- 90
Query: 323 RRKDYLEAT----KQGQETN 338
D+LE K G + N
Sbjct: 91 ---DHLEIVEVLLKHGADVN 107
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 269 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGACASETTSDWQTAVAIC 318
A +N +D G T LH+AA R E++ LL GA + +TA I
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 263 VLNMDLAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 302
+L + A +N +D G+T LH+AA + E++ LL GA
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,340,318
Number of Sequences: 62578
Number of extensions: 325479
Number of successful extensions: 1009
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 117
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)