BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045504
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 102/233 (43%), Gaps = 10/233 (4%)
Query: 7 SGGIPEEITNLT-NLTTIFFGGNKLNGSI--PITXXXXXXXXXXXXEDNKLEGSIPDNIC 63
SG +PE +TNL+ +L T+ N +G I + ++N G IP +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSS 122
+EL L L N LSG+IP+ +L+ LR L L N L IP +K + L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
N LTG +PS + N L I S N +G IP IG L+NL L L N G+IP G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 183 DLIXXXXXXXXXXXXXGAIPASLEKLS------YLEDLNLSFNKLEGEIPTCH 229
D G IPA++ K S ++ + K +G CH
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 103/268 (38%), Gaps = 47/268 (17%)
Query: 6 VSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRL 65
+ G IP+E+ + L T+ N L G IP +N+L G IP I RL
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLK----------- 113
L L+L N SG+IPA + SL L L +N +IP +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 114 -------DILQLNC----------------------------SSNFLTGPLPSEIGNLKV 138
D ++ C +S G N
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 139 LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXX 198
++ +D S N SG IP EIG + L L LG+N + GSIP+ GDL
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 199 GAIPASLEKLSYLEDLNLSFNKLEGEIP 226
G IP ++ L+ L +++LS N L G IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 1 MSNCNVSGGI-PEEITNLTN-LTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSI 58
+S+ N SG I P N N L ++ N G IP T N L G+I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 59 PDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQ 117
P ++ L++L +L+L N L G IP + +L L L N+LT IP N ++
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 118 LNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 177
++ S+N LTG +P IG L+ L I+ S N+FSG IP E+G ++L +L L N G+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 178 P 178
P
Sbjct: 555 P 555
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 30/251 (11%)
Query: 7 SGGIPEEITNLTN-LTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIP-DNICR 64
+G IP+ ++ + LT + GN G++P N G +P D + +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 65 LTELYELELGGNKLSGSIPACFNNL-ASLRILSLGSNELT-------------------- 103
+ L L+L N+ SG +P NL ASL L L SN +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 104 -------SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
IP T N +++ L+ S N+L+G +PS +G+L L + +N G IP E
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 157 IGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNL 216
+ +K LE L L +N L G IP+ + G IP + +L L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 217 SFNKLEGEIPT 227
S N G IP
Sbjct: 522 SNNSFSGNIPA 532
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 23/201 (11%)
Query: 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNK------- 53
+SN + SG IP E+ + +L + N NG+IP K
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 54 ---------------LEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLG 98
+G + + RL+ + G F+N S+ L +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 99 SNELTS-IPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI 157
N L+ IP ++ + LN N ++G +P E+G+L+ L I+D S N G IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 158 GGLKNLEYLFLGYNRLQGSIP 178
L L + L N L G IP
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP 721
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFL 125
+ L L++ GNKLSG + L++L++ SN+ P+ LK + L+ + N
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKF 281
Query: 126 TGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
TG +P + G L +D S N+F G +P G LE L L N G +P
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD---- 337
Query: 185 IXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIP 226
+L K+ L+ L+LSFN+ GE+P
Sbjct: 338 -------------------TLLKMRGLKVLDLSFNEFSGELP 360
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 5 NVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPD 60
++SG IP+E+ +L L + NKL+G IP +N L G IP+
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 102/233 (43%), Gaps = 10/233 (4%)
Query: 7 SGGIPEEITNLT-NLTTIFFGGNKLNGSI--PITXXXXXXXXXXXXEDNKLEGSIPDNIC 63
SG +PE +TNL+ +L T+ N +G I + ++N G IP +
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSS 122
+EL L L N LSG+IP+ +L+ LR L L N L IP +K + L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
N LTG +PS + N L I S N +G IP IG L+NL L L N G+IP G
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 183 DLIXXXXXXXXXXXXXGAIPASLEKLS------YLEDLNLSFNKLEGEIPTCH 229
D G IPA++ K S ++ + K +G CH
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 103/268 (38%), Gaps = 47/268 (17%)
Query: 6 VSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRL 65
+ G IP+E+ + L T+ N L G IP +N+L G IP I RL
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLK----------- 113
L L+L N SG+IPA + SL L L +N +IP +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 114 -------DILQLNC----------------------------SSNFLTGPLPSEIGNLKV 138
D ++ C +S G N
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 139 LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXX 198
++ +D S N SG IP EIG + L L LG+N + GSIP+ GDL
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 199 GAIPASLEKLSYLEDLNLSFNKLEGEIP 226
G IP ++ L+ L +++LS N L G IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 1 MSNCNVSGGI-PEEITNLTN-LTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSI 58
+S+ N SG I P N N L ++ N G IP T N L G+I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 59 PDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQ 117
P ++ L++L +L+L N L G IP + +L L L N+LT IP N ++
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 118 LNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 177
++ S+N LTG +P IG L+ L I+ S N+FSG IP E+G ++L +L L N G+I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 178 P 178
P
Sbjct: 552 P 552
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 30/251 (11%)
Query: 7 SGGIPEEITNLTN-LTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIP-DNICR 64
+G IP+ ++ + LT + GN G++P N G +P D + +
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 65 LTELYELELGGNKLSGSIPACFNNL-ASLRILSLGSNELT-------------------- 103
+ L L+L N+ SG +P NL ASL L L SN +
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 104 -------SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
IP T N +++ L+ S N+L+G +PS +G+L L + +N G IP E
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 157 IGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNL 216
+ +K LE L L +N L G IP+ + G IP + +L L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 217 SFNKLEGEIPT 227
S N G IP
Sbjct: 519 SNNSFSGNIPA 529
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 23/201 (11%)
Query: 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNK------- 53
+SN + SG IP E+ + +L + N NG+IP K
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 54 ---------------LEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLG 98
+G + + RL+ + G F+N S+ L +
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 99 SNELTS-IPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI 157
N L+ IP ++ + LN N ++G +P E+G+L+ L I+D S N G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 158 GGLKNLEYLFLGYNRLQGSIP 178
L L + L N L G IP
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP 718
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFL 125
+ L L++ GNKLSG + L++L++ SN+ P+ LK + L+ + N
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKF 278
Query: 126 TGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
TG +P + G L +D S N+F G +P G LE L L N G +P
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD---- 334
Query: 185 IXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIP 226
+L K+ L+ L+LSFN+ GE+P
Sbjct: 335 -------------------TLLKMRGLKVLDLSFNEFSGELP 357
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 5 NVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPD 60
++SG IP+E+ +L L + NKL+G IP +N L G IP+
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 5/220 (2%)
Query: 10 IPEEITNLTNLTTIFFGG-NKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTEL 68
IP + NL L ++ GG N L G IP + G+IPD + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDIL-QLNCSSNFLT 126
L+ N LSG++P ++L +L ++ N ++ +IP ++ + + + S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIX 186
G +P NL L +D S N G G KN + + L N L + G
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 187 XXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIP 226
G +P L +L +L LN+SFN L GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPD 60
+++ NVSG IP+ ++ + L T+ F N L+G++P + + N++ G+IPD
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 61 NICRLTELY-ELELGGNKLSGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQL 118
+ ++L+ + + N+L+G IP F NL +L + L N L + F + K+ ++
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 119 NCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
+ + N L L ++G K L +D N G +P + LK L L + +N L G IP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 57 SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDI 115
+IP NI T+ +L+L NKLS F+ L LR+L L N+L ++P F LK++
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 116 LQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175
L + N L L L + N + P L L YL LGYN LQ
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146
Query: 176 SIPNSFGDLIXXXXXXXXXXXXXGAIP-ASLEKLSYLEDLNLSFNKLE 222
S+P D + +P + +KL+ L+ L L N+L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 58/157 (36%), Gaps = 1/157 (0%)
Query: 16 NLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGG 75
LT L ++ NKL DNKL+ +L L EL L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 76 NKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIG 134
N+L P F++L L LSLG NEL S+P F L + +L +N L
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 135 NLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 171
L L + N V L+ L+ L L N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 72 ELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLP 130
+L +K+ + + F++ L L+L NE+ I FW L +L+LN S NFL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGD 183
NL L ++D S N+ + GL NL+ L L N+L+ S+P+ D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 52 NKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFW 110
N+++ D L ELEL N +S P FNNL +LR L L SN L IPL F
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 111 NLKDILQLNCSSN---FLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167
L ++ +L+ S N L + ++ NLK L + D N+ + GL +LE L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD---NDLVYISHRAFSGLNSLEQLT 158
Query: 168 L 168
L
Sbjct: 159 L 159
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 54 LEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI 105
+EGS+ + RL E+ +L G +L+ P F L LR+L++ N+LT++
Sbjct: 263 IEGSMLHELLRLQEI---QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 57 SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDIL 116
+I NI + L L L GN L+ +PA NL++LR+L L N LTS+P + +
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 117 QLNCSSNFLTGPLPSEIGNL 136
N +T LP E GNL
Sbjct: 297 YFYFFDNMVT-TLPWEFGNL 315
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 95 LSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIP 154
L L + ++ +I + + +L + N LT LP+EI NL L ++D S N + +P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LP 286
Query: 155 TEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
E+G L+Y + ++ + ++P FG+L
Sbjct: 287 AELGSCFQLKYFYF-FDNMVTTLPWEFGNL 315
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 53 KLEGSIPDNICRLTELYELELGGNKLSGSIPA-CFNNLASLRILSLGSNELTSIP-LTFW 110
KLE + D++ L ELY LG N+L G++P F++L L +L LG+N+LT +P F
Sbjct: 54 KLEPGVFDSLINLKELY---LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFL 168
L + +L N LT LP I L L + N + L +L + +L
Sbjct: 110 RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 52 NKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFW 110
+K S+P I T L L N+++ P F++L +L+ L LGSN+L ++P+ F
Sbjct: 28 SKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 170
+L + L+ +N LT LPS + + V + F N +P I L +L +L L
Sbjct: 86 SLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144
Query: 171 NRLQGSIPNSFGDLI 185
N+L+ SIP+ D +
Sbjct: 145 NQLK-SIPHGAFDRL 158
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 50 EDNKLEGSIPDNIC-RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP-L 107
E N L+ S+P+ + LT L +L LGGNKL FN L SL L+L +N+L S+P
Sbjct: 36 ETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
Query: 108 TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167
F L + +L ++N L L L + N V L +L+Y++
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
Query: 168 LGYNRLQGSIP 178
L N + P
Sbjct: 155 LHDNPWDCTCP 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNIC-RLTELYELELGG 75
LT+LT ++ GGNKL N+L+ S+P+ + +LT+L EL L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 76 NKLSGSIPACFNNLASLRILSLGSNELTSIP 106
N+L F+ L L+ L L N+L S+P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 57 SIPDNICRLTELYELELGGNKLSGSIP-ACFNNLASLRILSLGSNELTSIPLTFWN-LKD 114
S+P I T +LE K S+P F+ L SL L LG N+L S+P +N L
Sbjct: 21 SVPTGIPAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 115 ILQLNCSSNFLTGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ LN S+N L LP+ + L L + + N + L L+ L L N+L
Sbjct: 78 LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 174 QGSIPNSFGDLI 185
+ S+P+ D +
Sbjct: 137 K-SVPDGVFDRL 147
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QLN SSN +T P + NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 290
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 28/93 (30%)
Query: 16 NLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNIC-RLTELYELELG 74
+LT L ++ GGN+L S+P + RLT+L EL L
Sbjct: 105 HLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLN 139
Query: 75 GNKLSGSIPA-CFNNLASLRILSLGSNELTSIP 106
N+L SIPA F+ L +L+ LSL +N+L S+P
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSN 123
LT+L L L N+L F++L L L L +N+L S+PL F +L + +L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 124 FLTGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
L LPS + L L + + N + L NL+ L L N+LQ S+P+
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 183 DLI 185
D +
Sbjct: 176 DRL 178
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 57 SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDI 115
S+P I TE +L+L L+ A F L L L+L N+L ++ F +L ++
Sbjct: 28 SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 116 LQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175
L ++N L LP L + D L L+ L+LG N+L+
Sbjct: 86 GTLGLANNQL-ASLP--------LGVFDH---------------LTQLDKLYLGGNQLK- 120
Query: 176 SIPNSFGDLIXXXXXXXXXXXXXGAIPA-SLEKLSYLEDLNLSFNKLE 222
S+P+ D + +IPA + +KL+ L+ L+LS N+L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 28/93 (30%)
Query: 16 NLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNIC-RLTELYELELG 74
+LT L ++ GGN+L S+P + RLT+L EL L
Sbjct: 105 HLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLN 139
Query: 75 GNKLSGSIPA-CFNNLASLRILSLGSNELTSIP 106
N+L SIPA F+ L +L+ LSL +N+L S+P
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSN 123
LT+L L L N+L F++L L L L +N+L S+PL F +L + +L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 124 FLTGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
L LPS + L L + + N + L NL+ L L N+LQ S+P+
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 183 DLI 185
D +
Sbjct: 176 DRL 178
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 57 SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDI 115
S+P I TE +L+ G L+ A F L L L+L N+L ++ F +L ++
Sbjct: 28 SVPSGIPADTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 116 LQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175
L ++N L LP L + D L L+ L+LG N+L+
Sbjct: 86 GTLGLANNQL-ASLP--------LGVFDH---------------LTQLDKLYLGGNQLK- 120
Query: 176 SIPNSFGDLIXXXXXXXXXXXXXGAIPA-SLEKLSYLEDLNLSFNKLE 222
S+P+ D + +IPA + +KL+ L+ L+LS N+L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 55 EGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
E +PD L L L+L +L P FN+L+SL++L++ SN+L S+P
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 23/119 (19%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNF 124
L L L++ + FN L+SL +L + N NF
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------------------QENF 461
Query: 125 LTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGD 183
L P L+ L +D S + PT L +L+ L + N+L+ S+P+ D
Sbjct: 462 L----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QL+ SSN +T P + NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 290
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QL+ SSN +T P + NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 290
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 73 LGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNF-LTGPLP 130
L GN++S A F + +L IL L SN L I F L + QL+ S N L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
+ L L + + P GL L+YL+L N LQ N+F DL
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 50 EDNKLEGSIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PL 107
+DN L+ ++PDN R L L L L GN++ F L SL L L N + + P
Sbjct: 136 QDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 108 TFWNLKDILQLNCSSNFLTGPLPSEI 133
F +L ++ L +N L+ LP+E+
Sbjct: 195 AFRDLGRLMTLYLFANNLSM-LPAEV 219
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 51/153 (33%), Gaps = 2/153 (1%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSI--PLTFWNLKDILQLNCSSNFLTGP 128
L L N L+G A F L L L L N + P TF L + L+ L
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 129 LPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXX 188
P L L + NN + L NL +LFL NR+ ++F L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 189 XXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKL 221
P + L L L L N L
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 73 LGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNF-LTGPLP 130
L GN++S A F +L IL L SN L I F L + QL+ S N L P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
+ L L + + P GL L+YL+L N LQ ++F DL
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 151
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 50 EDNKLEGSIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PL 107
+DN L+ ++PD+ R L L L L GN++S F L SL L L N + + P
Sbjct: 136 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 108 TFWNLKDILQLNCSSNFLTGPLPSE-IGNLKVLVIIDFSMNNF 149
F +L ++ L +N L+ LP+E + L+ L + + N +
Sbjct: 195 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 73 LGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNF-LTGPLP 130
L GN++S A F +L IL L SN L I F L + QL+ S N L P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
+ L L + + P GL L+YL+L N LQ ++F DL
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 50 EDNKLEGSIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PL 107
+DN L+ ++PD+ R L L L L GN++S F L SL L L N + + P
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 108 TFWNLKDILQLNCSSNFLTGPLPSE-IGNLKVLVIIDFSMNNF 149
F +L ++ L +N L+ LP+E + L+ L + + N +
Sbjct: 196 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 293
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 294 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 342
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 66 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QL+ N +T P + NL
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF-GNQVTDLKP--LANL 175
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 176 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 289
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QLN N +T P + NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNF-GNQVTDLKP--LANL 171
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 61 NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLN 119
N+ L L ELEL GN+L P F L SLR L L ++ +I F +LK + +LN
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 120 CSSNFLTGPLPSEI 133
S N L LP ++
Sbjct: 233 LSHNNLMS-LPHDL 245
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-T 108
++N ++ D L L L+L N + FN L SL L L N LT++P
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 109 FWNLKDILQLNCSSN-------FLTGPLPS----EIGNLKVLVIIDFSMNNFSGVIPTE- 156
F L + +L +N + +PS ++G LK L I S F G++
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRY 160
Query: 157 -------------IGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPA 203
+ L LE L L NRL P SF L
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 204 SLEKLSYLEDLNLSFNKL 221
+ + L LE+LNLS N L
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 7/176 (3%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF 109
++NK+ + L L+ L L NK+S P F L L L L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNF--SGVIPTEIGGLKNLEYLF 167
K + +L N +T S L +++++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 168 LGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEG 223
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP-LTFWNLKDILQLNCSS 122
RL L +LEL N+L+G P F + ++ L LG N++ I F L + LN
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNF 149
N ++ +P +L L ++ + N F
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%)
Query: 133 IGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXX 192
G L LV ++ N +G+ P G +++ L LG N+++ F L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 193 XXXXXXGAIPASLEKLSYLEDLNLSFN 219
+P S E L+ L LNL+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 61 NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLN 119
N+ L L ELEL GN+L P F L SLR L L ++ +I F +LK + +LN
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 120 CSSNFLTGPLPSEI 133
S N L LP ++
Sbjct: 233 LSHNNLMS-LPHDL 245
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-T 108
++N ++ D L L L+L N + FN L SL L L N LT++P
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 109 FWNLKDILQLNCSSN-------FLTGPLPS----EIGNLKVLVIIDFSMNNFSGVIPTE- 156
F L + +L +N + +PS ++G LK L I S F G++
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRY 160
Query: 157 -------------IGGLKNLEYLFLGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPA 203
+ L LE L L NRL P SF L
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 204 SLEKLSYLEDLNLSFNKL 221
+ + L LE+LNLS N L
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 7/176 (3%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF 109
++NK+ + L L+ L L NK+S P F L L L L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNF--SGVIPTEIGGLKNLEYLF 167
K + +L N +T S L +++++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 168 LGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEG 223
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 51 DNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TF 109
DN++ P RLT+L L+L N+L+ F+ L L LSL N+L SIP F
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 110 WNLKDILQL 118
NLK + +
Sbjct: 99 DNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 51 DNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TF 109
DN++ P RLT+L L+L N+L+ F+ L L LSL N+L SIP F
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Query: 110 WNLKDILQL 118
NLK + +
Sbjct: 107 DNLKSLTHI 115
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTS--IPLTFWNLKD--ILQLNCS 121
+ L +L+L N L P CF + L L L + +L W L + I L+ +
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 122 SNFLTGPLPSEIGNLKV--LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPN 179
+N L S LK L +D S NN V L +L YL L YN +Q P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 180 SF 181
SF
Sbjct: 291 SF 292
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 52 NKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP-LTFW 110
N+L P N R ++L L+ G N +S P L L++L+L NEL+ I TF
Sbjct: 35 NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFV 94
Query: 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158
++ +L+ SN + + N K L+ +D S N G+ T++G
Sbjct: 95 FCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN---GLSSTKLG 139
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 28/134 (20%)
Query: 68 LYELELGGNKLSGSIPACFNNLASLRILSLGSNE------------LTSIPLTFWNLKDI 115
L L L N +S F+ L LRIL LG NE L +I + +
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 116 LQLNCSSNFLTGPL----------------PSEIGNLKVLVIIDFSMNNFSGVIPTEIGG 159
LQL+ SS L L PS L+ L I+D S NN + + + G
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 160 LKNLEYLFLGYNRL 173
L+NLE L +N L
Sbjct: 503 LENLEILDFQHNNL 516
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSS 122
+ T L +L+L N L F+ L SLR LSL N + + P +F+ L ++ L+
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
F + S+ + + LK LEYL + N + + N+F
Sbjct: 306 AFTKQSV---------------SLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 183 DLI 185
L+
Sbjct: 351 GLV 353
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 51 DNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TF 109
DN++ P RLT+L L+L N+L+ F+ L L LSL N+L SIP F
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 110 WNLKDILQL 118
NL+ + +
Sbjct: 99 DNLRSLTHI 107
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 289
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QLN N +T P + NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNF-GNQVTDLKP--LANL 171
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNC 120
+ LT L +L+L N++S P + L L L LG+N++++I PL L + L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 294
Query: 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173
+ N L P I NLK L + NN S + P + L L+ LF N++
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELYELELGGN 76
L NLT I F N+L P+ +N++ P + LT L L L N
Sbjct: 67 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 77 KLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNL 136
+++ P NL +L L L SN ++ I L + QL+ N +T P + NL
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF-GNQVTDLKP--LANL 176
Query: 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
L +D S N S + + + L NLE L N++ P
Sbjct: 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 10/134 (7%)
Query: 52 NKLEGSIPDNICRLTE-LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFW 110
N L D C E + L L N L+GS+ C +++L L +N + SIP
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT 470
Query: 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 170
+L+ + +LN +SN L L L I N + P + YL
Sbjct: 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWI 523
Query: 171 NRLQGSIPNSFGDL 184
N+ G + NS G +
Sbjct: 524 NKHSGVVRNSAGSV 537
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 56 GSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKD 114
S+P I T+ L L N+++ P F++L +L+ L SN+LT+IP F L
Sbjct: 25 ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 115 ILQLNCSSNFLTGPLPSEIGNLKVLVII 142
+ QL+ + N L NLK L I
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 53 KLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWN 111
KLE + D++ L +LY NKL+ F+ L L L L N L SIP F N
Sbjct: 47 KLEPGVFDHLVNLQQLY---FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 112 LKDILQL 118
LK + +
Sbjct: 104 LKSLTHI 110
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 31/129 (24%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF 109
+DN++ P + LT++ ELEL GN L + L S++ L L S ++T +
Sbjct: 77 KDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV---- 128
Query: 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169
PL + + NL+VL +N + + P + GL NL+YL +G
Sbjct: 129 -----------------TPL-AGLSNLQVLY---LDLNQITNISP--LAGLTNLQYLSIG 165
Query: 170 YNRLQGSIP 178
N++ P
Sbjct: 166 NNQVNDLTP 174
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 95 LSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVI 153
L L N++T + PL NL I +L S N L S I L+ + +D + + V
Sbjct: 74 LELKDNQITDLTPL--KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 154 PTEIGGLKNLEYLFLGYNRL 173
P + GL NL+ L+L N++
Sbjct: 130 P--LAGLSNLQVLYLDLNQI 147
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCS 121
+ T L L++G NK++ P NL+ L L +G+N+++ I +L + LN
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISDIN-AVKDLTKLKXLNVG 273
Query: 122 SNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
SN ++ S + NL L + + N IGGL NL LFL N + P
Sbjct: 274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 51 DNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TF 109
+N ++ D L L L+LG N + FN LASL L L N LT IP F
Sbjct: 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143
Query: 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYL 166
L + +L +N P+ S I ++ N ++ ++G LK LEY+
Sbjct: 144 EYLSKLRELWLRNN----PIES---------IPSYAFNRVPSLMRLDLGELKKLEYI 187
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 61 NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLN 119
N+ L L ELE+ GN P F+ L+SL+ L + +++++ I F L +++LN
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272
Query: 120 CSSNFLTGPLPSEIGN-LKVLVIIDFSMNNF 149
+ N L+ LP ++ L+ LV + N +
Sbjct: 273 LAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 55 EGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKD 114
E +PD L L L+L +L P FN+L+SL++L++ N S+ + +
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 115 ILQ-LNCSSNFLTGPLPSEIGNL-KVLVIIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 170
LQ L+ S N + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578
Query: 171 NRLQGSIPN 179
R++ + P+
Sbjct: 579 ERMECATPS 587
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 55 EGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKD 114
E +PD L L L+L +L P FN+L+SL++L++ N S+ + +
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 115 ILQ-LNCSSNFLTGPLPSEIGNL-KVLVIIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 170
LQ L+ S N + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 602
Query: 171 NRLQGSIPN 179
R++ + P+
Sbjct: 603 ERMECATPS 611
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSS 122
LT L L L GN+L F+ L +L+ L L N+L S+P F L ++ LN +
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
N L L L +D S N + L L+ L L N+L+ S+P+
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVF 201
Query: 183 D 183
D
Sbjct: 202 D 202
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 49/162 (30%)
Query: 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCS 121
I L + L LGGNKL + L +L L L N+L S+P ++
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD---------- 106
Query: 122 SNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
++ NLK LV+++ + + + L NL YL L +N+LQ S+P
Sbjct: 107 ----------KLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLNLAHNQLQ-SLPKGV 152
Query: 182 GDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEG 223
D KL+ L +L+LS+N+L+
Sbjct: 153 FD-----------------------KLTNLTELDLSYNQLQS 171
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 55 EGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKD 114
E +PD L L L+L +L P FN+L+SL++L++ N S+ + +
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 115 ILQ-LNCSSNFLTGPLPSEIGNL-KVLVIIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 170
LQ L+ S N + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283
Query: 171 NRLQGSIPN 179
R++ + P+
Sbjct: 284 ERMECATPS 292
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 6/175 (3%)
Query: 50 EDNKLEGSIPDNIC-RLTELYELELGGNKLS--GSIPACFNNLASLRILSLGSNELTSIP 106
E NKL+ S+P + +LT+L +L L N LS G SL+ L L N + ++
Sbjct: 36 ESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94
Query: 107 LTFWNLKDILQLNCS-SNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEY 165
F L+ + L+ SN S +L+ L+ +D S + GL +LE
Sbjct: 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154
Query: 166 LFLGYNRLQGS-IPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFN 219
L + N Q + +P+ F +L P + LS L+ LN+S N
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 9 GIPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTEL 68
GIP ++T L + GN+ +P +N++ + +T+L
Sbjct: 28 GIPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L L N+L P F+ L SLR+LSL N+++ +P
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 10 IPEEITNLTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNICRLTELY 69
+P+E++N +LT I N+++ + N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 70 ELELGGNKLSGSIPACFNNLASLRILSLGSNEL 102
L L GN +S FN+L++L L++G+N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 95 LSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIP 154
L L N+ T +P N K + ++ S+N ++ N+ L+ + S N + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 155 TEIGGLKNLEYLFLGYNRLQGSIPNSFGDL 184
GLK+L L L N + +F DL
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNEL-----TSIPLTFWNLKDILQLNC 120
+ L +LEL N++ P CF+ + L L L + +L + L N I L+
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSL 229
Query: 121 SSNFLTGPLPSEIGNLKV--LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
S++ L+ + LK L ++D S NN + V L LEY FL YN +Q
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 179 NSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLEDLNLSFNKLEG 223
+S L +I ASL K L LE LN+ N + G
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 58 IPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI 105
IP + + L EL ++LG N L+ + FNN SL+ L+L N +TS+
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNEL-----TSIPLTFWNLKDILQLNC 120
+ L +LEL N++ P CF+ + L L L + +L + L N I L+
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSL 239
Query: 121 SSNFLTGPLPSEIGNLKV--LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
S++ L+ + LK L ++D S NN + V L LEY FL YN +Q
Sbjct: 240 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 299
Query: 179 NSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLEDLNLSFNKLEG 223
+S L +I ASL K L LE LN+ N + G
Sbjct: 300 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 66 TELYELELGGNKLSGSIPACFNNLASLRILSLGSNEL-----TSIPLTFWNLKDILQLNC 120
+ L +LEL N++ P CF+ + L L L + +L + L N I L+
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSL 234
Query: 121 SSNFLTGPLPSEIGNLKV--LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178
S++ L+ + LK L ++D S NN + V L LEY FL YN +Q
Sbjct: 235 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 294
Query: 179 NSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLEDLNLSFNKLEG 223
+S L +I ASL K L LE LN+ N + G
Sbjct: 295 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 53 KLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWN 111
KLE + D+ LT+L L L N+L+ F+ L L L+L N+L SIP+ F N
Sbjct: 54 KLEPGVFDS---LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDN 110
Query: 112 LKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLE 164
LK + + P E + +L + ++ + + S V P GG+ N++
Sbjct: 111 LKSLTHI----YLFNNPWDCECSD--ILYLKNWIVQHASIVNPLGNGGVDNVK 157
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
+LT L L+L N+L F+ L L+ LSL N+L S+P
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 17 LTNLTTIFFGGNKLNGSIPITXXXXXXXXXXXXEDNKLEGSIPDNIC-RLTELYELELGG 75
LTNLT ++ N+L S+P DN S+P+ + +LT+L +L L
Sbjct: 132 LTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 76 NKLSGSIPACFNNLASLRILSLGSN 100
N+L F+ L SL + L +N
Sbjct: 191 NQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSS 122
LT L L L GN+L F+ L +L+ L L N+L S+P F L ++ L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182
N L L L +D N + L L+ L L N+L+ S+P+
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVF 201
Query: 183 D 183
D
Sbjct: 202 D 202
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPL 129
L+L N+L S+P L +L +L + N LTS+PL L ++ +L N L
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 130 PSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 SIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
S+P R L EL EL L GN+L P L LSL +N LT +P
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 31/129 (24%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF 109
+DN++ P + LT++ ELEL GN L + L S++ L L S ++T +
Sbjct: 71 KDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV---- 122
Query: 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169
PL + + NL+VL + +N + + P + GL NL+YL +G
Sbjct: 123 -----------------TPL-AGLSNLQVLYL---DLNQITNISP--LAGLTNLQYLSIG 159
Query: 170 YNRLQGSIP 178
++ P
Sbjct: 160 NAQVSDLTP 168
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 95 LSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVI 153
L L N++T + PL NL I +L S N L S I L+ + +D + + V
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 123
Query: 154 PTEIGGLKNLEYLFLGYNRL 173
P + GL NL+ L+L N++
Sbjct: 124 P--LAGLSNLQVLYLDLNQI 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPL 129
L+L N+L S+P L +L +L + N LTS+PL L ++ +L N L
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 130 PSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 SIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
S+P R L EL EL L GN+L P L LSL +N LT +P
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPL 129
L+L N+L S+P L +L +L + N LTS+PL L ++ +L N L
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 130 PSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 SIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
S+P R L EL EL L GN+L P L LSL +N LT +P
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 61 NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLN 119
N+ L +L EL+L GN LS P F L L+ L + +++ I F NL+ ++++N
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 120 CSSNFLT 126
+ N LT
Sbjct: 262 LAHNNLT 268
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 4/175 (2%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-T 108
+N+++ ++ L L L+L N + FN LA+L L L N LT+IP
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 109 FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDF-SMNNFSGVIPTEIGGLKNLEYLF 167
F L + +L +N + + L +D + S + GL NL YL
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 168 LGYNRLQGSIPNSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLE 222
L L+ IPN LI P S + L +L+ L + ++++
Sbjct: 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPL 129
L+L N+L S+P L +L +L + N LTS+PL L ++ +L N L
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 130 PSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 192
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N LT +P
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF 109
+ NK++ +++ R ++LY L LG N++ + L +LR L L +N+L+ +P
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 110 WNLK 113
+LK
Sbjct: 261 PDLK 264
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 60 DNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLN 119
D+ L LY L L NK+S F+ L L+ L + N L IP + +++L
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELR 129
Query: 120 CSSNFLTGPLPSEIGNLKVLVIIDFSMNNF--SGVIPTEIGGLKNLEYLFLGYNRLQG-- 175
N + L+ + I+ N SG P GLK L YL + +L G
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIP 188
Query: 176 -SIPNSFGDL 184
+P + +L
Sbjct: 189 KDLPETLNEL 198
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPL 129
L+L N+L S+P L +L +L + N LTS+PL L ++ +L N L
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 130 PSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF 181
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N LT +P
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 50 EDNKLEGSIPDNIC-RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
E NKL+ S+P + +LT+L +L L N++ F+ L L IL L N+L S+P
Sbjct: 36 ESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 57 SIPDNIC-RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
S+PD + +LT+L L L NKL F+ L L+ L+L +N+L S+P
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 70 ELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
LEL NKL F+ L L LSL N++ S+P
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 50 EDNKLEGSIPDNIC-RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100
+NKL+ S+P+ + +LT+L EL L N+L F+ L SL+ + L +N
Sbjct: 84 HENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L L +E G NKL F + L+ L+L SN+L S+P
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 50 EDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100
NK++ SIP + +L L EL + N+L F+ L SL+ + L +N
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 63 CRLTE-LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCS 121
C T+ L L + N L+ +I C +++L L SN++ SIP L+ + +LN +
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452
Query: 122 SNFLTG 127
SN L
Sbjct: 453 SNQLKS 458
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 71 LELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L+L NK+ SIP L +L+ L++ SN+L S+P
Sbjct: 426 LDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVP 460
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N+LT +P
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N+LT +P
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 57 SIPDNICR-LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
S+P R L EL EL L GN+L P L LSL +N+LT +P
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N+LT +P
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
L EL EL L GN+L P L LSL +N+LT +P
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
>pdb|2X6N|A Chain A, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6N|B Chain B, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6N|C Chain C, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6N|D Chain D, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6N|E Chain E, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6N|F Chain F, Human Foamy Virus Integrase - Catalytic Core. Manganese-
Bound Structure.
pdb|2X6S|A Chain A, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure.
pdb|2X6S|B Chain B, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure.
pdb|2X6S|C Chain C, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure.
pdb|2X6S|D Chain D, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure.
pdb|2X6S|E Chain E, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure.
pdb|2X6S|F Chain F, Human Foamy Virus Integrase - Catalytic Core. Magnesium-
Bound Structure
Length = 200
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 22 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 50
>pdb|2X78|A Chain A, Human Foamy Virus Integrase - Catalytic Core.
pdb|2X78|B Chain B, Human Foamy Virus Integrase - Catalytic Core.
pdb|2X78|C Chain C, Human Foamy Virus Integrase - Catalytic Core
Length = 200
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 22 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 50
>pdb|3OYM|A Chain A, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Manganese
pdb|3OYM|B Chain B, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Manganese
pdb|3OYN|A Chain A, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3OYN|B Chain B, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3S3O|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv) N224h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
pdb|3S3O|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv) N224h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
Length = 395
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 134 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 162
>pdb|4BAC|A Chain A, Prototype Foamy Virus Strand Transfer Complexes On Product
Dna
pdb|4BAC|B Chain B, Prototype Foamy Virus Strand Transfer Complexes On Product
Dna
Length = 396
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 135 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 163
>pdb|3OYK|A Chain A, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Manganese
pdb|3OYK|B Chain B, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Manganese
pdb|3OYL|A Chain A, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3OYL|B Chain B, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3S3N|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv) S217h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
pdb|3S3N|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv) S217h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
Length = 395
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 134 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 162
>pdb|3OYI|A Chain A, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Manganese
pdb|3OYI|B Chain B, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Manganese
pdb|3OYJ|A Chain A, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Magnesium And The Insti Mk2048
pdb|3OYJ|B Chain B, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Magnesium And The Insti Mk2048
Length = 395
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 134 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 162
>pdb|3L2Q|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Apo Form
pdb|3L2Q|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Apo Form
pdb|3L2R|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium
pdb|3L2R|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium
pdb|3L2U|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Gs9137
(Elvitegravir)
pdb|3L2U|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Gs9137
(Elvitegravir)
pdb|3L2V|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Mk0518
(Raltegravir)
pdb|3L2V|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Mk0518
(Raltegravir)
pdb|3L2W|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Gs9137
(Elvitegravir)
pdb|3L2W|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Gs9137
(Elvitegravir)
pdb|3OY9|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese At 2.55 Resolution
pdb|3OY9|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese At 2.55 Resolution
pdb|3OYA|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Raltegravir At
2.65 Resolution
pdb|3OYA|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Raltegravir At
2.65 Resolution
pdb|3OS0|A Chain A, Pfv Strand Transfer Complex (Stc) At 2.81 A Resolution
pdb|3OS0|B Chain B, Pfv Strand Transfer Complex (Stc) At 2.81 A Resolution
pdb|3OS1|A Chain A, Pfv Target Capture Complex (Tcc) At 2.97 A Resolution
pdb|3OS1|B Chain B, Pfv Target Capture Complex (Tcc) At 2.97 A Resolution
pdb|3OS2|A Chain A, Pfv Target Capture Complex (Tcc) At 3.32 A Resolution
pdb|3OS2|B Chain B, Pfv Target Capture Complex (Tcc) At 3.32 A Resolution
pdb|3OYB|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk2048
pdb|3OYB|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk2048
pdb|3OYC|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Pica
pdb|3OYC|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Pica
pdb|3OYD|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Gs9160
pdb|3OYD|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Gs9160
pdb|3OYE|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound2
pdb|3OYE|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound2
pdb|3OYF|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
L-870,810
pdb|3OYF|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
L-870,810
pdb|3OYG|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound1 (Compoundg)
pdb|3OYG|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound1 (Compoundg)
pdb|3OYH|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk0536
pdb|3OYH|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk0536
pdb|3S3M|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Dolutegravir
(SGSK1349572)
pdb|3S3M|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Dolutegravir
(SGSK1349572)
pdb|4E7H|A Chain A, Pfv Intasome Prior To 3'-Processing, Apo Form (Ui-Apo)
pdb|4E7H|B Chain B, Pfv Intasome Prior To 3'-Processing, Apo Form (Ui-Apo)
pdb|4E7I|A Chain A, Pfv Intasome Freeze-Trapped Prior To 3'-Processing,
Mn-Bound Form (Ui- Mn)
pdb|4E7I|B Chain B, Pfv Intasome Freeze-Trapped Prior To 3'-Processing,
Mn-Bound Form (Ui- Mn)
pdb|4E7J|A Chain A, Pfv Integrase Target Capture Complex, Apo Form (Tcc-Apo),
At 3.15 A Resolution
pdb|4E7J|B Chain B, Pfv Integrase Target Capture Complex, Apo Form (Tcc-Apo),
At 3.15 A Resolution
pdb|4E7K|A Chain A, Pfv Integrase Target Capture Complex (Tcc-Mn),
Freeze-Trapped Prior To Strand Transfer, At 3.0 A
Resolution
pdb|4E7K|B Chain B, Pfv Integrase Target Capture Complex (Tcc-Mn),
Freeze-Trapped Prior To Strand Transfer, At 3.0 A
Resolution
pdb|4E7L|A Chain A, Pfv Integrase Strand Transfer Complex (Stc-Mn) Following
Reaction In Crystallo, At 3.0 A Resolution.
pdb|4E7L|B Chain B, Pfv Integrase Strand Transfer Complex (Stc-Mn) Following
Reaction In Crystallo, At 3.0 A Resolution.
pdb|4BDY|A Chain A, Pfv Intasome With Inhibitor Xz-89
pdb|4BDY|B Chain B, Pfv Intasome With Inhibitor Xz-89
pdb|4BDZ|A Chain A, Pfv Intasome With Inhibitor Xz-90
pdb|4BDZ|B Chain B, Pfv Intasome With Inhibitor Xz-90
pdb|4BE0|A Chain A, Pfv Intasome With Inhibitor Xz-115
pdb|4BE0|B Chain B, Pfv Intasome With Inhibitor Xz-115
pdb|4BE1|A Chain A, Pfv Intasome With Inhibitor Xz-116
pdb|4BE1|B Chain B, Pfv Intasome With Inhibitor Xz-116
pdb|4BE2|A Chain A, Pfv Intasome With Inhibitor Xz-259
pdb|4BE2|B Chain B, Pfv Intasome With Inhibitor Xz-259
Length = 395
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 127 GPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156
GPLP G L VLV++D M F+ + PT+
Sbjct: 134 GPLPPSQGYLYVLVVVD-GMTGFTWLYPTK 162
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 70 ELELGGNKLSGSIPACFNNLASLRILSLGSN 100
EL L GN L+ P F++L LR LG+N
Sbjct: 34 ELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 63 CRLTELYELELGGNKLSGSIPACFNNLASLRI--------LSLGSNELTSIPLTFWNLKD 114
C ++ EL++ NKL + NN+ L + L SN+LT I +T L
Sbjct: 177 CSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVT--PLTQ 234
Query: 115 ILQLNCSSNFLTGPLPSEIGNLKVLVII-----DFSMNNFSGVIPTEIGGLKNLEYLFLG 169
+ +CS N LT S + L L I + + + + +I + G + ++ L +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294
Query: 170 YN 171
+N
Sbjct: 295 HN 296
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 64 RLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIP 106
T+L +L L N+++ F L L+ L+L +N+L S+P
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVP 339
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 85 CFNNLASLRILSLGSNE------------------------LTSIPLT---FWNLKDILQ 117
F NL +LRIL LGS++ L+ L F NLK + +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 118 LNCSSNFLTG-PLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL--KNLEYLFLGYNRLQ 174
L+ S N + L G L L IDFS N V E+ L K L + L N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 175 GSIPNSFG 182
+ +G
Sbjct: 188 SRVSVDWG 195
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 70 ELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSN 123
+L +G N + P F N+ L +L L N+L+S+P F N + L+ S+N
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,107,755
Number of Sequences: 62578
Number of extensions: 218979
Number of successful extensions: 810
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 278
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)