Query 045504
Match_columns 229
No_of_seqs 135 out of 2184
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 02:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-28 5.7E-33 212.7 14.4 225 2-226 148-373 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.4E-27 5.2E-32 206.7 14.5 227 1-227 171-422 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.8E-25 3.8E-30 174.9 0.5 221 2-222 181-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-24 2.9E-29 170.1 2.0 220 4-223 159-379 (873)
5 KOG4237 Extracellular matrix p 99.8 4.2E-22 9.2E-27 149.3 -4.2 221 2-222 75-359 (498)
6 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.8E-26 154.5 -1.7 207 14-222 74-304 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 4.9E-26 153.9 -1.6 212 8-223 45-259 (1255)
8 KOG0617 Ras suppressor protein 99.8 1.3E-21 2.8E-26 131.5 -5.0 181 40-225 31-215 (264)
9 KOG4237 Extracellular matrix p 99.8 1.9E-20 4E-25 140.6 -1.5 210 18-227 67-340 (498)
10 KOG0472 Leucine-rich repeat pr 99.7 3.6E-21 7.8E-26 144.9 -8.2 205 10-222 83-288 (565)
11 KOG0617 Ras suppressor protein 99.7 4.8E-20 1E-24 124.0 -3.0 157 62-222 29-186 (264)
12 KOG0472 Leucine-rich repeat pr 99.7 6E-21 1.3E-25 143.7 -8.3 207 8-222 104-310 (565)
13 PLN03210 Resistant to P. syrin 99.7 1.5E-16 3.2E-21 140.6 17.5 102 114-220 779-880 (1153)
14 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.3E-24 137.6 -1.2 213 11-223 44-292 (319)
15 cd00116 LRR_RI Leucine-rich re 99.7 9.8E-19 2.1E-23 135.0 -1.9 211 11-221 74-319 (319)
16 PLN03210 Resistant to P. syrin 99.7 7.5E-16 1.6E-20 136.2 15.9 210 3-220 643-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.7 5.4E-16 1.2E-20 129.9 10.0 98 18-126 199-296 (754)
18 PRK15387 E3 ubiquitin-protein 99.7 3E-15 6.5E-20 125.1 14.2 81 138-227 383-463 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 2.7E-15 5.9E-20 125.7 13.0 199 2-227 207-405 (754)
20 KOG0618 Serine/threonine phosp 99.6 8.6E-17 1.9E-21 132.4 -0.1 204 10-219 302-510 (1081)
21 KOG0618 Serine/threonine phosp 99.6 5.7E-17 1.2E-21 133.5 -5.5 200 17-220 240-487 (1081)
22 KOG1909 Ran GTPase-activating 99.5 5E-15 1.1E-19 110.0 -0.3 187 36-222 86-311 (382)
23 PRK15387 E3 ubiquitin-protein 99.5 7.6E-13 1.6E-17 111.0 11.6 125 67-207 343-467 (788)
24 KOG3207 Beta-tubulin folding c 99.4 4.8E-14 1E-18 107.8 0.8 210 15-224 118-341 (505)
25 KOG1909 Ran GTPase-activating 99.4 7.9E-14 1.7E-18 103.7 0.5 209 14-222 26-283 (382)
26 COG4886 Leucine-rich repeat (L 99.4 1E-12 2.2E-17 104.5 6.1 198 22-227 97-295 (394)
27 PF14580 LRR_9: Leucine-rich r 99.3 2.7E-12 6E-17 89.1 4.1 125 90-217 19-148 (175)
28 KOG1259 Nischarin, modulator o 99.3 1E-12 2.2E-17 96.6 0.9 203 16-224 180-414 (490)
29 COG4886 Leucine-rich repeat (L 99.2 9.1E-12 2E-16 99.0 4.8 181 14-201 112-293 (394)
30 KOG0532 Leucine-rich repeat (L 99.2 3.6E-13 7.7E-18 106.3 -3.3 168 23-198 80-247 (722)
31 KOG0532 Leucine-rich repeat (L 99.2 3.3E-13 7.1E-18 106.5 -3.6 169 46-222 79-247 (722)
32 PF14580 LRR_9: Leucine-rich r 99.2 8E-12 1.7E-16 86.8 2.8 101 65-167 41-146 (175)
33 PLN03150 hypothetical protein; 99.1 2.1E-10 4.5E-15 95.8 8.1 110 115-224 420-530 (623)
34 PLN03150 hypothetical protein; 99.1 2.4E-10 5.2E-15 95.5 6.2 90 139-228 420-509 (623)
35 PF13855 LRR_8: Leucine rich r 99.1 1.3E-10 2.8E-15 66.9 3.2 61 18-78 1-61 (61)
36 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.4E-15 65.4 4.1 57 139-195 3-59 (61)
37 KOG2982 Uncharacterized conser 99.0 7.1E-11 1.5E-15 86.8 1.5 187 40-226 69-266 (418)
38 KOG3207 Beta-tubulin folding c 99.0 2.5E-11 5.5E-16 93.2 -2.0 183 39-222 118-314 (505)
39 KOG1259 Nischarin, modulator o 99.0 8.9E-11 1.9E-15 86.6 -0.1 183 11-199 207-413 (490)
40 COG5238 RNA1 Ran GTPase-activa 98.9 8E-10 1.7E-14 80.4 2.2 209 16-224 28-287 (388)
41 KOG4658 Apoptotic ATPase [Sign 98.8 2.9E-09 6.2E-14 91.5 4.6 90 11-101 564-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.4E-13 88.0 4.8 201 17-222 522-730 (889)
43 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.8E-14 86.4 -0.9 108 14-126 91-199 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.7 9.1E-10 2E-14 80.1 -2.3 222 1-222 37-316 (388)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-10 3.6E-15 84.9 -7.8 175 43-219 186-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-10 3E-15 85.3 -8.2 193 19-213 186-391 (419)
47 KOG1859 Leucine-rich repeat pr 98.6 3.2E-10 6.8E-15 92.6 -7.5 128 90-222 164-292 (1096)
48 KOG0531 Protein phosphatase 1, 98.6 3.2E-09 7E-14 84.9 -2.6 195 17-222 71-268 (414)
49 KOG1644 U2-associated snRNP A' 98.5 2.5E-07 5.4E-12 64.7 5.3 125 20-148 21-151 (233)
50 KOG4579 Leucine-rich repeat (L 98.4 4.6E-09 9.9E-14 68.8 -4.2 104 20-126 29-136 (177)
51 KOG2982 Uncharacterized conser 98.4 3E-08 6.4E-13 73.3 -0.6 199 16-215 69-285 (418)
52 KOG1859 Leucine-rich repeat pr 98.4 9.3E-10 2E-14 90.0 -9.4 127 67-198 165-292 (1096)
53 KOG4579 Leucine-rich repeat (L 98.3 3.7E-08 8.1E-13 64.6 -3.0 82 90-173 53-135 (177)
54 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.5E-11 60.7 4.7 125 68-194 21-149 (233)
55 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.8E-11 45.7 3.5 36 186-222 2-37 (44)
56 PF13306 LRR_5: Leucine rich r 98.2 6.8E-06 1.5E-10 54.7 6.4 107 11-122 5-112 (129)
57 PF12799 LRR_4: Leucine Rich r 98.2 3.6E-06 7.8E-11 44.5 3.7 38 161-199 1-38 (44)
58 KOG3665 ZYG-1-like serine/thre 98.1 7.7E-07 1.7E-11 75.0 0.7 149 42-191 122-281 (699)
59 KOG3665 ZYG-1-like serine/thre 98.1 5.6E-07 1.2E-11 75.8 -0.3 148 66-215 122-281 (699)
60 PF13306 LRR_5: Leucine rich r 98.1 3.5E-05 7.5E-10 51.2 8.2 77 131-211 52-128 (129)
61 PRK15386 type III secretion pr 98.0 7E-05 1.5E-09 59.0 8.9 132 16-171 50-187 (426)
62 KOG2123 Uncharacterized conser 97.8 8.6E-07 1.9E-11 65.2 -3.3 102 110-215 16-123 (388)
63 PRK15386 type III secretion pr 97.7 0.00034 7.3E-09 55.3 8.7 111 18-147 72-187 (426)
64 KOG2739 Leucine-rich acidic nu 97.4 8E-05 1.7E-09 54.4 1.9 86 132-217 60-151 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00047 1E-08 50.5 3.3 87 135-223 41-130 (260)
66 KOG1947 Leucine rich repeat pr 97.1 4E-05 8.6E-10 62.7 -2.8 109 17-125 187-307 (482)
67 KOG3864 Uncharacterized conser 97.0 0.00014 3E-09 51.2 -0.3 81 138-218 102-185 (221)
68 KOG1947 Leucine rich repeat pr 96.9 0.00021 4.6E-09 58.4 0.1 106 14-119 210-327 (482)
69 KOG2123 Uncharacterized conser 96.7 3.5E-05 7.6E-10 57.0 -5.3 79 18-100 19-98 (388)
70 KOG4341 F-box protein containi 96.5 7.6E-05 1.6E-09 58.1 -5.0 63 158-220 369-437 (483)
71 PF00560 LRR_1: Leucine Rich R 96.5 0.00094 2E-08 29.4 0.4 18 210-228 1-18 (22)
72 KOG4341 F-box protein containi 96.4 0.00032 6.9E-09 54.8 -2.0 38 16-53 188-227 (483)
73 PF13504 LRR_7: Leucine rich r 95.8 0.0062 1.3E-07 24.8 1.3 13 210-222 2-14 (17)
74 KOG3864 Uncharacterized conser 95.0 0.0017 3.8E-08 45.9 -2.7 84 113-196 101-187 (221)
75 PF13516 LRR_6: Leucine Rich r 94.8 0.013 2.9E-07 26.2 0.8 21 185-205 2-22 (24)
76 KOG4308 LRR-containing protein 94.2 9.6E-05 2.1E-09 60.0 -12.1 180 44-223 89-304 (478)
77 smart00370 LRR Leucine-rich re 90.9 0.23 5.1E-06 22.4 1.9 14 18-31 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 90.9 0.23 5.1E-06 22.4 1.9 14 18-31 2-15 (26)
79 smart00368 LRR_RI Leucine rich 90.7 0.19 4.2E-06 23.3 1.5 21 185-205 2-22 (28)
80 KOG4308 LRR-containing protein 88.2 0.0025 5.4E-08 52.0 -10.0 157 68-224 89-277 (478)
81 KOG0473 Leucine-rich repeat pr 86.3 0.014 3E-07 42.5 -6.0 88 110-200 39-126 (326)
82 smart00364 LRR_BAC Leucine-ric 86.1 0.56 1.2E-05 21.4 1.3 17 210-227 3-19 (26)
83 KOG0473 Leucine-rich repeat pr 84.9 0.021 4.4E-07 41.7 -5.7 87 14-103 38-124 (326)
84 smart00367 LRR_CC Leucine-rich 84.2 0.81 1.8E-05 20.7 1.4 12 185-196 2-13 (26)
85 smart00365 LRR_SD22 Leucine-ri 81.2 1.5 3.3E-05 20.0 1.7 14 185-198 2-15 (26)
86 KOG3763 mRNA export factor TAP 77.9 1.2 2.6E-05 36.9 1.3 63 135-199 216-284 (585)
87 KOG3763 mRNA export factor TAP 77.5 1.6 3.4E-05 36.2 1.8 65 158-224 215-285 (585)
88 smart00446 LRRcap occurring C- 22.9 29 0.00062 15.8 0.0 13 14-26 9-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.6e-28 Score=212.67 Aligned_cols=225 Identities=42% Similarity=0.578 Sum_probs=138.6
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+.+.+|..++++++|+.|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.|++.+|.+.+.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 45555556666666666666666666666556666666666666666666666555566666666666666666666655
Q ss_pred CCccccCCCCCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 82 IPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
.|..+..+++|+.|++.+|.+. .+|..+..+++|+.+++.+|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 5666666666666666666554 445556666666666666666555555555555666666666666655555555566
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
++|++|++++|.++...|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.+|
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 666666666666555555555556666666666666655555555566666666666666555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.4e-27 Score=206.69 Aligned_cols=227 Identities=37% Similarity=0.589 Sum_probs=148.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|++|++.+|.+.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 35677777777777778888888888777776777777777777777777777766667777777777777777777766
Q ss_pred CCCccccCCCCCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCC
Q 045504 81 SIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGG 159 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 159 (229)
..|..+..+++|+.|++.+|.+. .+|..+..+++|+.+++++|.+....|..+..+++|+.|++++|.+.+..|..+..
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 66666777777777777766654 44555666666666666666665555555555666666666666655555555555
Q ss_pred CCccceeeecCccccCCCchhccCCCcCcEEecCCccc------------------------cCccchHhhccCCCCeEE
Q 045504 160 LKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNL------------------------SGAIPASLEKLSYLEDLN 215 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------~~~~~~~l~~~~~L~~L~ 215 (229)
+++|+.|++++|.++...|..++.+++|+.|++++|.+ .+..+..+..+++|+.|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 55666666665555545555555555555555555544 444445555666666666
Q ss_pred ecCccCcCCCCC
Q 045504 216 LSFNKLEGEIPT 227 (229)
Q Consensus 216 l~~n~~~~~~p~ 227 (229)
+++|.+++.+|.
T Consensus 411 L~~n~l~~~~p~ 422 (968)
T PLN00113 411 LQDNSFSGELPS 422 (968)
T ss_pred CcCCEeeeECCh
Confidence 666666666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-25 Score=174.95 Aligned_cols=221 Identities=24% Similarity=0.257 Sum_probs=116.8
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|+|+......|.++.+|..|.++.|.++...+..|..+++|+.|++..|++...--.+|..+++|+.|.+..|++...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 44555555555566666666666666666555555555566666666666655422233344555555555555555544
Q ss_pred CCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCc---
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI--- 157 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--- 157 (229)
....|..+.++++|++..|++..+.. .+..+..|+++++++|.+....+..+.-+++|+.|+++.|.++...+..|
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 44555555555555555555543332 33444455555555555444444444445555555555555544444444
Q ss_pred ---------------------CCCCccceeeecCccccC---CCchhccCCCcCcEEecCCccccCccchHhhccCCCCe
Q 045504 158 ---------------------GGLKNLEYLFLGYNRLQG---SIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLED 213 (229)
Q Consensus 158 ---------------------~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 213 (229)
.++.+|+.|+|+.|.++- .....|..++.|+.|++.+|++..+...++..++.|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 444555555555543321 12223444566666666666665555555666666666
Q ss_pred EEecCccCc
Q 045504 214 LNLSFNKLE 222 (229)
Q Consensus 214 L~l~~n~~~ 222 (229)
||+.+|.+-
T Consensus 421 LdL~~Naia 429 (873)
T KOG4194|consen 421 LDLGDNAIA 429 (873)
T ss_pred ecCCCCcce
Confidence 666666554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-24 Score=170.08 Aligned_cols=220 Identities=24% Similarity=0.250 Sum_probs=142.1
Q ss_pred CCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC
Q 045504 4 CNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 83 (229)
|-+......+|..-.++++|++.+|.|+..-.+.|..+.+|-+|.++.|+++-..+..|..+++|+.|++..|.|.....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 34443334445555556666666666555555555555566666666666654444455556666666666666553334
Q ss_pred ccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCc
Q 045504 84 ACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKN 162 (229)
Q Consensus 84 ~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 162 (229)
..|..+++|+.+.+.+|.+..+.+ .+..+.+++++++..|+++......+.++++|+.|++++|.|..+.+++-.-+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 455556666666666666665554 4556777888888888777666667777788888888888888777777777778
Q ss_pred cceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 163 LEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
|+.|+|+.|.+++..+..|..+..|++|.|++|.+.......+..+++|++||++.|.+..
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 8888888888876666667666667777777766665555556666666666666666553
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=4.2e-22 Score=149.34 Aligned_cols=221 Identities=26% Similarity=0.312 Sum_probs=142.3
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccc-cccCCCCCccccCCCCccEEEccCccCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLED-NKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+.|+|+...+.+|..+++|+.||+++|.|+.+.|++|.+++++..|.+++ |+|+......|..+.+++.|.+.-|++.-
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence 45777777777788888888888888888877788888888877777777 77775444555566666666555555543
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCC------------------------------------
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSN------------------------------------ 123 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~------------------------------------ 123 (229)
...+.|..++++..|.+-.|.+..++. .+..+..++.+++..+
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 333444444444444433332221111 1111111111111111
Q ss_pred -------------------------ccCCCCC-cCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCC
Q 045504 124 -------------------------FLTGPLP-SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 177 (229)
Q Consensus 124 -------------------------~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 177 (229)
......| ..|..+++|+++++++|+++++-+.+|.+...++.|.+.+|.+...-
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 0111122 33556678888888888888888888888888888888888876555
Q ss_pred chhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 178 PNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
..+|.++..|+.|+|.+|+++...+..+.....|.+|++-.|++.
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 667788888888888888888777888888888888888887765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.7e-21 Score=154.49 Aligned_cols=207 Identities=28% Similarity=0.391 Sum_probs=111.0
Q ss_pred ccCCCCccEEEccCcccCC-CCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCC
Q 045504 14 ITNLTNLTTIFFGGNKLNG-SIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASL 92 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 92 (229)
++.++.|+.+.++.|++.. -+|..+..+..|+.|++++|++. ..|..+....++-.|++++|+|.......+.++..|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 5566667777777666542 23444445666777777777766 566666666666677777776663333444556666
Q ss_pred cEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc-ccCCCCcCCCCccceeeecCc
Q 045504 93 RILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS-GVIPTEIGGLKNLEYLFLGYN 171 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 171 (229)
-.|+++.|.+..+|+.+..+..|+++.+++|......-.-+..+++|.+|.+++.+-+ ..+|.++.++.+|..++++.|
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 6666666666666666666666666666665443221122233344444444443311 233444444444444444444
Q ss_pred cccCCCchhccCCCcCcEEecCCccccC----------------------ccchHhhccCCCCeEEecCccCc
Q 045504 172 RLQGSIPNSFGDLISLKSLNLSNNNLSG----------------------AIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
.+. ..|..+.++++|+.|+|++|.++. ..|.+++.++.|+.|.+.+|+++
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 443 444444444444444444444431 44555555555555555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.3e-21 Score=153.86 Aligned_cols=212 Identities=33% Similarity=0.506 Sum_probs=180.6
Q ss_pred CCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccC-CCCCccccCCCCccEEEccCccCCCCCCccc
Q 045504 8 GGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLE-GSIPDNICRLTELYELELGGNKLSGSIPACF 86 (229)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 86 (229)
..+|+.++.+.+|+.|.+.+|++. .+-+.+..++.|+.+.+..|.+. +.+|..+..+..|+.|+++.|++. ..|..+
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L 122 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL 122 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh
Confidence 357889999999999999999987 55567788999999999998864 456666778999999999999998 778888
Q ss_pred cCCCCCcEEEecCCcCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccce
Q 045504 87 NNLASLRILSLGSNELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEY 165 (229)
Q Consensus 87 ~~l~~L~~l~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 165 (229)
..-.+.-.|+++.|.+..+|.. +.++..|-.++++.|+.. ..|.-+..+..|++|++++|.+...-...+..+++|..
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 8888999999999999999985 457888999999999987 56666678889999999999887554455566788888
Q ss_pred eeecCcccc-CCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 166 LFLGYNRLQ-GSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 166 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
|.++++.-+ +.+|.++..+.+|..+|++.|.+. ..|.++-.+++|+.|++++|+++.
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence 999887543 367888888999999999999997 889999999999999999999873
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-21 Score=131.54 Aligned_cols=181 Identities=30% Similarity=0.519 Sum_probs=143.0
Q ss_pred CCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEE
Q 045504 40 KLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLN 119 (229)
Q Consensus 40 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~ 119 (229)
++..++.|.+++|+++ .+|..++.+.+|+.|++.+|++. ..|..++.+++|+.++++-|.+..+|..++.++.|+.++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4567888888888887 66777788888888888888887 678888888888888888888888888888888888888
Q ss_pred ecCCccC-CCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 120 CSSNFLT-GPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 120 l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
+.++... ...|..|..++.|+.|.+++|.+. +.|...+.+++|+.|.+.+|.+- ..|..++.+..|++|++++|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 8888765 347778888888888899999887 66777888889999999888876 77888888888999999999887
Q ss_pred CccchHhhcc---CCCCeEEecCccCcCCC
Q 045504 199 GAIPASLEKL---SYLEDLNLSFNKLEGEI 225 (229)
Q Consensus 199 ~~~~~~l~~~---~~L~~L~l~~n~~~~~~ 225 (229)
..|..++.+ .+=+.+.+..|++...|
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 666555543 22235556666655443
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-20 Score=140.62 Aligned_cols=210 Identities=24% Similarity=0.301 Sum_probs=173.3
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccC-ccCCCCCCccccCCCCCcEEE
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGG-NKLSGSIPACFNNLASLRILS 96 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 96 (229)
+....|++..|+|+...+++|..+++|++|+|++|.|+.+.|.+|..++++.+|.+.+ |+|++.....|..+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5677899999999988999999999999999999999999999999999988887776 899977677899999999999
Q ss_pred ecCCcCCCcc-hhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccc------------------------
Q 045504 97 LGSNELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSG------------------------ 151 (229)
Q Consensus 97 l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------------ 151 (229)
+..+.+..++ +.+.+++.+..+.+..+.+.......+..+.+++++.++.|.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9988888655 478899999888888887764333466666666666665554110
Q ss_pred -------------------------------------cCC-CCcCCCCccceeeecCccccCCCchhccCCCcCcEEecC
Q 045504 152 -------------------------------------VIP-TEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLS 193 (229)
Q Consensus 152 -------------------------------------~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 193 (229)
..| ..|.++++|+.|++++|.++..-..+|.....+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 000 112567899999999999998888999999999999999
Q ss_pred CccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 194 NNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 194 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
.|++..+...++.++..|+.|++.+|+++.-.|-
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 9999878888999999999999999999876664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.6e-21 Score=144.93 Aligned_cols=205 Identities=34% Similarity=0.553 Sum_probs=103.4
Q ss_pred CCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCC
Q 045504 10 IPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNL 89 (229)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 89 (229)
.|.+++.+..++.++.++++++ ..|..+..+..+..++.+++.+. ..++.++.+..++.++-.+|++. ..|..+..+
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~ 159 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNL 159 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHH
Confidence 3444555555566666666555 45555555555666666655554 34444444555555555555555 344445555
Q ss_pred CCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeec
Q 045504 90 ASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (229)
.++..+.+.++.+..+|+..-.+..|++++...|-.. ..|+.++.+.+|+.|++.+|++. ..| .|.++..|+.+.++
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence 5555555555555555544333555555555554443 44445555555555555555554 223 34445445555555
Q ss_pred CccccCCCchhcc-CCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 170 YNRLQGSIPNSFG-DLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 170 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
.|.+. ..|+... .++.+..||+.+|++. ..|..++-+++|.+||+++|.++
T Consensus 237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 55443 3333322 3444455555555544 33444444444555555555444
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.8e-20 Score=124.03 Aligned_cols=157 Identities=28% Similarity=0.525 Sum_probs=143.9
Q ss_pred ccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccE
Q 045504 62 ICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVI 141 (229)
Q Consensus 62 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 141 (229)
+..+.+++.|.++.|.++ ..|..+..+.+|+.+++.+|.+..+|.+++++++|+.+.+.-++.. ..|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 446778899999999998 6777889999999999999999999999999999999999998876 78999999999999
Q ss_pred EEEecccccc-cCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCcc
Q 045504 142 IDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 142 l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
||+++|.+.+ ..|..|..+..|+.|.+++|.+. .+|..++++.+|+.|.+.+|.+. ..|..++.+..|++|.+.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 9999998764 57888888999999999999997 88999999999999999999987 788889999999999999999
Q ss_pred Cc
Q 045504 221 LE 222 (229)
Q Consensus 221 ~~ 222 (229)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 87
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=6e-21 Score=143.74 Aligned_cols=207 Identities=30% Similarity=0.434 Sum_probs=171.6
Q ss_pred CCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCcccc
Q 045504 8 GGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFN 87 (229)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 87 (229)
.++|+.+++...+..++++++.+. ..++.++.+..++.++..+|++. ..|.++.++.++..+++.+|++....+..+.
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 357888888899999999998887 67777788888899999998887 6777788888888899999988855444444
Q ss_pred CCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceee
Q 045504 88 NLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167 (229)
Q Consensus 88 ~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 167 (229)
+..|++++...|-++.+|..++.+.+|+.+.+..|.+. ..| .|.+|..|+++.++.|.+.-........++++..||
T Consensus 182 -m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 -MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred -HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 88899999988888899999999899988888888887 455 778888899999998888744444456888899999
Q ss_pred ecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 168 LGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+.+|.++ +.|..+..+.+|++||+++|.++ ..|..++++ +|+.|-+.||++.
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 9999987 88888888888999999999987 677778888 9999999998864
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.5e-16 Score=140.57 Aligned_cols=102 Identities=27% Similarity=0.265 Sum_probs=45.9
Q ss_pred cccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecC
Q 045504 114 DILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLS 193 (229)
Q Consensus 114 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 193 (229)
.|+.+.+++|......|..+.++++|+.|++++|...+..|... .+++|++|++++|..-...|.. ..+|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 44455555544433455555556666666666553222333322 3444444444443221122211 1244444454
Q ss_pred CccccCccchHhhccCCCCeEEecCcc
Q 045504 194 NNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 194 ~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
+|.+. ..|..+..+++|+.|++++|+
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 44443 334444555555555555543
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.4e-19 Score=137.56 Aligned_cols=213 Identities=26% Similarity=0.301 Sum_probs=124.7
Q ss_pred CccccCCCCccEEEccCcccCC------CCcccccCCCCccEEeccccccCCCCCccccCCCC---ccEEEccCccCCCC
Q 045504 11 PEEITNLTNLTTIFFGGNKLNG------SIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTE---LYELELGGNKLSGS 81 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~ 81 (229)
+..+...++++.++++++.+.+ ..+..+..+++|+.|++++|.+....+..+..+.. |++|++.+|.+...
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 3344455667777776665541 12234555667777777777665333433333333 77777777766521
Q ss_pred ----CCccccCC-CCCcEEEecCCcCC-----CcchhhcccccccEEEecCCccCCCC----CcCcCCcCcccEEEEecc
Q 045504 82 ----IPACFNNL-ASLRILSLGSNELT-----SIPLTFWNLKDILQLNCSSNFLTGPL----PSEIGNLKVLVIIDFSMN 147 (229)
Q Consensus 82 ----~~~~~~~l-~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~ 147 (229)
....+..+ ++|+.+++.+|.++ .+...+..+..|+.+++.++.+.+.. +..+...++|+.|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 11233444 67777777777666 22334455567777777777665321 122334457777888777
Q ss_pred ccccc----CCCCcCCCCccceeeecCccccCCCchhcc-----CCCcCcEEecCCccccCc----cchHhhccCCCCeE
Q 045504 148 NFSGV----IPTEIGGLKNLEYLFLGYNRLQGSIPNSFG-----DLISLKSLNLSNNNLSGA----IPASLEKLSYLEDL 214 (229)
Q Consensus 148 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L 214 (229)
.+.+. ....+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++. ....+..+++|+++
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 66532 233445567788888888776642222221 136788888888877632 23345556778888
Q ss_pred EecCccCcC
Q 045504 215 NLSFNKLEG 223 (229)
Q Consensus 215 ~l~~n~~~~ 223 (229)
++++|.+++
T Consensus 284 ~l~~N~l~~ 292 (319)
T cd00116 284 DLRGNKFGE 292 (319)
T ss_pred ECCCCCCcH
Confidence 888887764
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=9.8e-19 Score=134.97 Aligned_cols=211 Identities=23% Similarity=0.266 Sum_probs=154.9
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCC---ccEEeccccccCC----CCCccccCC-CCccEEEccCccCCCCC
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQK---LQGLGLEDNKLEG----SIPDNICRL-TELYELELGGNKLSGSI 82 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~ 82 (229)
+..+..+++|+.|+++++.+.+..+..+..+.+ |++|++++|.+.. .....+..+ ++|+.|++.+|.+....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 456778899999999999987655665555555 9999999998762 222334556 89999999999987432
Q ss_pred ----CccccCCCCCcEEEecCCcCCC-----cchhhcccccccEEEecCCccCCC----CCcCcCCcCcccEEEEecccc
Q 045504 83 ----PACFNNLASLRILSLGSNELTS-----IPLTFWNLKDILQLNCSSNFLTGP----LPSEIGNLKVLVIIDFSMNNF 149 (229)
Q Consensus 83 ----~~~~~~l~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~ 149 (229)
...+..+++|+++++.+|.+.. ++..+...+.|+.+++++|.+.+. ....+..+++|++|++++|.+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 3345667899999999998872 333455667999999999987633 224456678999999999987
Q ss_pred cccCCCCc-----CCCCccceeeecCccccC----CCchhccCCCcCcEEecCCccccCc----cchHhhcc-CCCCeEE
Q 045504 150 SGVIPTEI-----GGLKNLEYLFLGYNRLQG----SIPNSFGDLISLKSLNLSNNNLSGA----IPASLEKL-SYLEDLN 215 (229)
Q Consensus 150 ~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~ 215 (229)
.+.....+ ...+.|++|++++|.+++ .....+..+++|+++++++|.+.+. .+..+... +.+++++
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 74222111 134789999999998863 2234456668999999999999865 34444444 7999999
Q ss_pred ecCccC
Q 045504 216 LSFNKL 221 (229)
Q Consensus 216 l~~n~~ 221 (229)
+.+|++
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 998864
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=7.5e-16 Score=136.18 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=141.8
Q ss_pred CCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEE-----------
Q 045504 3 NCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYEL----------- 71 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L----------- 71 (229)
+|...+.+|. ++.+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|... ++++|+.|
T Consensus 643 ~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 643 GSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccc
Confidence 3444445553 5666777777777665444566666666777777777654222334322 34444444
Q ss_pred ----------EccCccCCCCCCccc------------------------------cCCCCCcEEEecCCc-CCCcchhhc
Q 045504 72 ----------ELGGNKLSGSIPACF------------------------------NNLASLRILSLGSNE-LTSIPLTFW 110 (229)
Q Consensus 72 ----------~l~~~~~~~~~~~~~------------------------------~~l~~L~~l~l~~~~-~~~~~~~~~ 110 (229)
++.++.+. ..|..+ ...++|+.|++.+|. +..+|..+.
T Consensus 721 p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 721 PDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred ccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 44444433 122111 112456677776663 446788888
Q ss_pred ccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEE
Q 045504 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSL 190 (229)
Q Consensus 111 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 190 (229)
.+++|+.|++.+|......|... .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|+.|
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 99999999999886544566554 6789999999998644344432 368999999999997 788889999999999
Q ss_pred ecCCccccCccchHhhccCCCCeEEecCcc
Q 045504 191 NLSNNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 191 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
++.+|.-...++..+..+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999986555667777889999999999995
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5.4e-16 Score=129.91 Aligned_cols=98 Identities=26% Similarity=0.441 Sum_probs=45.4
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEe
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSL 97 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 97 (229)
++++.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+ .++|+.|++++|.+. ..|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 35666666666665 3333222 35666666666554 233322 124555555555544 2232221 24455555
Q ss_pred cCCcCCCcchhhcccccccEEEecCCccC
Q 045504 98 GSNELTSIPLTFWNLKDILQLNCSSNFLT 126 (229)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 126 (229)
++|.+..+|..+. +.|+.|++++|.++
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccc
Confidence 5554444443322 24444444444443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=3e-15 Score=125.11 Aligned_cols=81 Identities=31% Similarity=0.310 Sum_probs=58.9
Q ss_pred cccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEec
Q 045504 138 VLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLS 217 (229)
Q Consensus 138 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 217 (229)
+|+.|++++|.+.+ .|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 46667777776663 2322 246777788887776 44542 246788888888887 677888899999999999
Q ss_pred CccCcCCCCC
Q 045504 218 FNKLEGEIPT 227 (229)
Q Consensus 218 ~n~~~~~~p~ 227 (229)
+|++++.+|.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 9999987664
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=2.7e-15 Score=125.72 Aligned_cols=199 Identities=28% Similarity=0.485 Sum_probs=138.8
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.++ .+|..+. ++|+.|++++|.+. .+|..+. +.|+.|++++|.+. .+|..+. .+|+.|++++|.+. .
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~ 276 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-C 276 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-c
Confidence 456665 3444333 58889999988887 4555433 47888999998887 4555442 47888999888887 4
Q ss_pred CCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLK 161 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 161 (229)
.|..+. ++|+.|++++|.++.+|..+. ..|+.+++.+|.+.. .|..+ .++|+.|++++|.+++ .|..+. +
T Consensus 277 LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~ 346 (754)
T PRK15370 277 LPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--P 346 (754)
T ss_pred cccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--C
Confidence 455443 478889998888887775442 467788888888763 34332 2578888898888875 344332 6
Q ss_pred ccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 162 NLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+|+.|++++|.++ .+|..+. +.|++|++++|.+.. +|..+. ..|+.|++++|++. .+|.
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCch
Confidence 8889999998887 5565443 588999999998874 444443 36888899998887 5553
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=8.6e-17 Score=132.43 Aligned_cols=204 Identities=31% Similarity=0.418 Sum_probs=153.3
Q ss_pred CCccccCCCCccEEEccCcccCCCCcccc-cCCCC-ccEEeccccccCCCCCc-cccCCCCccEEEccCccCCCCCCccc
Q 045504 10 IPEEITNLTNLTTIFFGGNKLNGSIPITL-GKLQK-LQGLGLEDNKLEGSIPD-NICRLTELYELELGGNKLSGSIPACF 86 (229)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~-L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 86 (229)
+|......+.|+.|++..|++. .+|+.+ ..... ++.++.+.+++. ..+. .-..++.|+.|++.+|.+++.....+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 4555556677777777777776 444433 22332 666666666665 2332 22346778999999999998888888
Q ss_pred cCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccce
Q 045504 87 NNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEY 165 (229)
Q Consensus 87 ~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 165 (229)
..+.+|+.|++++|++..+|. .+.++..|++|.+++|..+ ..|..+..++.|++|....|.+. .+| .+..++.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 889999999999999998987 5678999999999999987 66788888999999999999887 566 6788899999
Q ss_pred eeecCccccCCC-chhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCc
Q 045504 166 LFLGYNRLQGSI-PNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFN 219 (229)
Q Consensus 166 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 219 (229)
+|++.|.++... +.... .++|++||+++|.-...-...+..++++..+++.-+
T Consensus 457 lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred EecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 999999887533 33333 389999999998644455566777888888887776
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=5.7e-17 Score=133.45 Aligned_cols=200 Identities=33% Similarity=0.412 Sum_probs=108.0
Q ss_pred CCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEE
Q 045504 17 LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILS 96 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 96 (229)
-.+|++++++.+.+. ..|.++..+.+|+.+++.+|.++ ..|.....+.+|+.|...+|.+. ..|.....+..|++|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 367888888888887 55677788888888888888775 44444445555555555555554 3344444455555555
Q ss_pred ecCCcCCCcchhhc--------------------------ccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc
Q 045504 97 LGSNELTSIPLTFW--------------------------NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS 150 (229)
Q Consensus 97 l~~~~~~~~~~~~~--------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 150 (229)
+..|.+..+|+.+. ..+.|+.+.+.+|.+++..-..+-++.+|+.|++++|.+.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 55554443333110 0112333333444444433334444455555555555554
Q ss_pred ccCCCCcCCCCccceeeecCccccC----------------------CCchhccCCCcCcEEecCCccccCccchHhhcc
Q 045504 151 GVIPTEIGGLKNLEYLFLGYNRLQG----------------------SIPNSFGDLISLKSLNLSNNNLSGAIPASLEKL 208 (229)
Q Consensus 151 ~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 208 (229)
.+....+.++..|+.|++++|.++. ..| .+.+++.|+.+|++.|.+...........
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 3333344455555555555554430 344 44555666666666666654432222233
Q ss_pred CCCCeEEecCcc
Q 045504 209 SYLEDLNLSFNK 220 (229)
Q Consensus 209 ~~L~~L~l~~n~ 220 (229)
++|++||++||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 677777777765
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=5e-15 Score=110.01 Aligned_cols=187 Identities=24% Similarity=0.235 Sum_probs=133.6
Q ss_pred ccccCCCCccEEeccccccCCCCCccc----cCCCCccEEEccCccCCCCCCc-------------cccCCCCCcEEEec
Q 045504 36 ITLGKLQKLQGLGLEDNKLEGSIPDNI----CRLTELYELELGGNKLSGSIPA-------------CFNNLASLRILSLG 98 (229)
Q Consensus 36 ~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~l~l~ 98 (229)
+++..+++|+.++|+.|.+....+..| ..+..|++|++.+|.+...... ....-++|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 344556788888888888764444443 4567788888888877632211 12345788889888
Q ss_pred CCcCCCcc-----hhhcccccccEEEecCCccCCCCC----cCcCCcCcccEEEEecccccc----cCCCCcCCCCccce
Q 045504 99 SNELTSIP-----LTFWNLKDILQLNCSSNFLTGPLP----SEIGNLKVLVIIDFSMNNFSG----VIPTEIGGLKNLEY 165 (229)
Q Consensus 99 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~ 165 (229)
+|.+.+-+ ..+...+.|+.+.+..|++..... ..+..+++|+.||+.+|.++. .+...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 88777443 356677889999998888763322 456788999999999998763 24455677788999
Q ss_pred eeecCccccCCCchhc-----cCCCcCcEEecCCccccCc----cchHhhccCCCCeEEecCccCc
Q 045504 166 LFLGYNRLQGSIPNSF-----GDLISLKSLNLSNNNLSGA----IPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 166 L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+.+++|.+.+....++ ...+.|+.+.+.+|.++.. +..++...|.|+.|++++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999998876544433 3368999999999988754 3345566799999999999883
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=7.6e-13 Score=110.98 Aligned_cols=125 Identities=30% Similarity=0.312 Sum_probs=90.2
Q ss_pred CccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEec
Q 045504 67 ELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM 146 (229)
Q Consensus 67 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 146 (229)
+|+.|++++|++.. .|.. ..+|+.|++.+|.+..+|.. ...|+.+++.+|.+. ..|.. .++|+.|++++
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred ccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 46666666666652 3322 23556666666666665543 246888999999887 34433 35799999999
Q ss_pred ccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhc
Q 045504 147 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEK 207 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 207 (229)
|.+.+ .|.. ..+|+.|++++|.++ .+|..+.++++|+.|++++|.+.+..+..+..
T Consensus 412 N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 412 NRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 99885 3443 347889999999998 78888999999999999999998776666533
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.8e-14 Score=107.77 Aligned_cols=210 Identities=23% Similarity=0.243 Sum_probs=150.8
Q ss_pred cCCCCccEEEccCcccCCCCc-ccccCCCCccEEeccccccCCC--CCccccCCCCccEEEccCccCCCCCCc-cccCCC
Q 045504 15 TNLTNLTTIFFGGNKLNGSIP-ITLGKLQKLQGLGLEDNKLEGS--IPDNICRLTELYELELGGNKLSGSIPA-CFNNLA 90 (229)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~ 90 (229)
.++.+|+.+.+.++.+..... .....|++++.|++++|=+... +......+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999999998863222 3566899999999999865432 233446799999999999987632221 123578
Q ss_pred CCcEEEecCCcCC--CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccC-CCCcCCCCccceee
Q 045504 91 SLRILSLGSNELT--SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVI-PTEIGGLKNLEYLF 167 (229)
Q Consensus 91 ~L~~l~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~ 167 (229)
+|+.|.++.|+++ ++......+|.|+.+.+.+|............++.|++|++++|.+.... ......++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 8999999999988 44556678899999999888422122222334567999999999876332 23356788999999
Q ss_pred ecCccccCC-Cchh-----ccCCCcCcEEecCCccccCc-cchHhhccCCCCeEEecCccCcCC
Q 045504 168 LGYNRLQGS-IPNS-----FGDLISLKSLNLSNNNLSGA-IPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 168 l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
++.+.+++. .|+. ...+++|++|++..|.+.+. .-..+..+++|+.+.+..|.++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 999988752 2332 35578999999999999654 234566778888888888887754
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=7.9e-14 Score=103.74 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=155.6
Q ss_pred ccCCCCccEEEccCcccCC----CCcccccCCCCccEEeccccccC---CCCC-------ccccCCCCccEEEccCccCC
Q 045504 14 ITNLTNLTTIFFGGNKLNG----SIPITLGKLQKLQGLGLEDNKLE---GSIP-------DNICRLTELYELELGGNKLS 79 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~ 79 (229)
...+..++.|++++|.+.. .....++..+.|+..+++.---. ...| .++...|+|+.|++++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4467889999999999873 24455667778888888863221 1222 34456789999999999988
Q ss_pred CCCCcc----ccCCCCCcEEEecCCcCCCcc--------------hhhcccccccEEEecCCccCCCC----CcCcCCcC
Q 045504 80 GSIPAC----FNNLASLRILSLGSNELTSIP--------------LTFWNLKDILQLNCSSNFLTGPL----PSEIGNLK 137 (229)
Q Consensus 80 ~~~~~~----~~~l~~L~~l~l~~~~~~~~~--------------~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~ 137 (229)
...+.. ++.+..|+.|.+++|++.... ....+-+.|+.+.+.+|++.+.. ...++..+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 665544 466889999999999987321 12345678999999999876432 24566778
Q ss_pred cccEEEEeccccccc----CCCCcCCCCccceeeecCccccCC----CchhccCCCcCcEEecCCccccCccchHh----
Q 045504 138 VLVIIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGS----IPNSFGDLISLKSLNLSNNNLSGAIPASL---- 205 (229)
Q Consensus 138 ~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---- 205 (229)
.++.+.++.|.+... ....+..+++|+.|++++|-++.. +-..+..++.|++|.+++|.+.+.+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999999987632 334567899999999999988753 33445678899999999999987765544
Q ss_pred -hccCCCCeEEecCccCc
Q 045504 206 -EKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 206 -~~~~~L~~L~l~~n~~~ 222 (229)
...|.|+++++.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 24689999999999876
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=1e-12 Score=104.46 Aligned_cols=198 Identities=36% Similarity=0.516 Sum_probs=141.8
Q ss_pred EEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCC-CccEEEccCccCCCCCCccccCCCCCcEEEecCC
Q 045504 22 TIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLT-ELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100 (229)
Q Consensus 22 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 100 (229)
.++...+.+. ........+..++.+.+.++.++ ..+.....+. +|+.|++++|.+. ..+..+..+++|+.|++..|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555553 22233345577888888888887 3444444553 7888888888877 44556778888888888888
Q ss_pred cCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchh
Q 045504 101 ELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNS 180 (229)
Q Consensus 101 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 180 (229)
.+..++......+.|+.++++++.+. ..|........++++.+++|... ..+..+....++..+.+.++.+. ..+..
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 88888877767888888888888887 34433334455888888888533 34455667777888888888775 33666
Q ss_pred ccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 181 FGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+..++++++|++++|.+.+... ++...+++.+++++|.++...|.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 7777889999999998875544 77888999999999888766653
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=2.7e-12 Score=89.14 Aligned_cols=125 Identities=26% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCcEEEecCCcCCCcchhhc-ccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeee
Q 045504 90 ASLRILSLGSNELTSIPLTFW-NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFL 168 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 168 (229)
.++++|++.++.+..+.. +. .+.+|+.++++.|.+... ..+..+++|++|++++|.+++........+++|+.|.+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 344555555554444322 22 344555555555555422 23445566666666666665432211123566666666
Q ss_pred cCccccC-CCchhccCCCcCcEEecCCccccCc---cchHhhccCCCCeEEec
Q 045504 169 GYNRLQG-SIPNSFGDLISLKSLNLSNNNLSGA---IPASLEKLSYLEDLNLS 217 (229)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~ 217 (229)
++|.+.+ .....+..+++|++|++.+|.+.+. -...+..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6666653 1234455667777777777766543 12345566777776543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=1e-12 Score=96.58 Aligned_cols=203 Identities=21% Similarity=0.222 Sum_probs=139.5
Q ss_pred CCCCccEEEccCcc--------cCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC---CCC-
Q 045504 16 NLTNLTTIFFGGNK--------LNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG---SIP- 83 (229)
Q Consensus 16 ~~~~L~~L~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~- 83 (229)
-+..|.+|.+++.. +.+..|-.+..+++|..+.+++|.-..+..- -..=|.|+.+.+.+..+.. ..|
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~~~~l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQDVPSLLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheece-eecCchhheeeeecccccccccccch
Confidence 35677777776532 1123344445567778888887763321111 1123556666665543321 011
Q ss_pred -------------------ccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEE
Q 045504 84 -------------------ACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDF 144 (229)
Q Consensus 84 -------------------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 144 (229)
..+.....|+++++++|.++.+..+..-.|+++.++++.|++... +.++.+++|+.||+
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDL 336 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeec
Confidence 111223468889999999999999888899999999999998733 45778899999999
Q ss_pred ecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCc-cchHhhccCCCCeEEecCccCcC
Q 045504 145 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGA-IPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++|.++.. ..+-..+.+++.|.+++|.+.+ ..-++++-+|..||+++|++... -...++++|.|+.+.+.+|++.+
T Consensus 337 S~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 337 SGNLLAEC-VGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhHhh-hhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99988743 2333466789999999998853 35567788999999999988643 23467899999999999999875
Q ss_pred C
Q 045504 224 E 224 (229)
Q Consensus 224 ~ 224 (229)
.
T Consensus 414 ~ 414 (490)
T KOG1259|consen 414 S 414 (490)
T ss_pred c
Confidence 3
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=9.1e-12 Score=99.04 Aligned_cols=181 Identities=36% Similarity=0.556 Sum_probs=143.6
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCC-CccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCC
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQ-KLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASL 92 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 92 (229)
....+.++.+++.++.+. .++....... +|+.|+++++++. ..+..+..+++|+.|++..|++. ..+......++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 344578999999999988 5556556664 9999999999987 45456778999999999999998 555555577999
Q ss_pred cEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcc
Q 045504 93 RILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 172 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (229)
+.++++++.+..+|........|+.+.+.++... ..+..+....++..+.+..|.+.. .+..+..++++++|++++|.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence 9999999999999987767777999999988543 345566777888888888887663 35667788889999999999
Q ss_pred ccCCCchhccCCCcCcEEecCCccccCcc
Q 045504 173 LQGSIPNSFGDLISLKSLNLSNNNLSGAI 201 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 201 (229)
+++... ++...++++|+++++.+.+..
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccc--ccccCccCEEeccCccccccc
Confidence 974433 778899999999998876543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=3.6e-13 Score=106.34 Aligned_cols=168 Identities=30% Similarity=0.470 Sum_probs=86.2
Q ss_pred EEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcC
Q 045504 23 IFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNEL 102 (229)
Q Consensus 23 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 102 (229)
.|++.|.+. .+|..+..+..|+.+.+++|.+. ..|....++..|++++++.|++. ..|..++.++ |+.+.+.+|.+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 444444444 44444444555555555555554 44555555555555555555554 4454444443 55555555555
Q ss_pred CCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhcc
Q 045504 103 TSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182 (229)
Q Consensus 103 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 182 (229)
+.+|..+.....|.+++.+.|.+. ..|.-+.++.+++.+.+.+|.+.. +|..+.. -.|..||++.|.++ .+|..|+
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchhhh
Confidence 555555555555555555555554 233333444555555555555442 2322332 23555555555554 5555555
Q ss_pred CCCcCcEEecCCcccc
Q 045504 183 DLISLKSLNLSNNNLS 198 (229)
Q Consensus 183 ~~~~L~~L~l~~~~~~ 198 (229)
++..|++|-|.+|.+.
T Consensus 232 ~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhheeeeeccCCCC
Confidence 5555555555555554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.3e-13 Score=106.52 Aligned_cols=169 Identities=33% Similarity=0.497 Sum_probs=102.6
Q ss_pred EEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCcc
Q 045504 46 GLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFL 125 (229)
Q Consensus 46 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 125 (229)
..+++.|++. .+|..+..+..|+.+.++.|.+. ..|..+.++..|+.++++.|.+..+|..+..++ |+.+.++.|.+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 3455555554 55555555566666666666654 556666666666666666666666666555443 45555556555
Q ss_pred CCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHh
Q 045504 126 TGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASL 205 (229)
Q Consensus 126 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 205 (229)
+ ..|..+...+.+..++.+.|.+. ..|..+.++.+|+.|.+..|.+. .+|..+. .-.|.+||++.|++. .+|..+
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhh
Confidence 5 44555555566666666666665 34445566666666666666665 4555555 335666666666665 566666
Q ss_pred hccCCCCeEEecCccCc
Q 045504 206 EKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 206 ~~~~~L~~L~l~~n~~~ 222 (229)
.++++|++|-+.+|++.
T Consensus 231 r~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhheeeeeccCCCC
Confidence 66666666666666665
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=8e-12 Score=86.84 Aligned_cols=101 Identities=24% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhh-cccccccEEEecCCccCCCC-CcCcCCcCcccEE
Q 045504 65 LTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTF-WNLKDILQLNCSSNFLTGPL-PSEIGNLKVLVII 142 (229)
Q Consensus 65 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l 142 (229)
+.+|+.|++++|.+... ..+..+++|+.|++++|.++.+...+ ..++.|+.+.+.+|.+.+.. -..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 34444444444444421 12333444444444444444443322 23444444444444443221 1333445555555
Q ss_pred EEecccccccC---CCCcCCCCccceee
Q 045504 143 DFSMNNFSGVI---PTEIGGLKNLEYLF 167 (229)
Q Consensus 143 ~l~~~~~~~~~---~~~~~~~~~L~~L~ 167 (229)
++.+|.+.... ...+..+|+|+.||
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred eccCCcccchhhHHHHHHHHcChhheeC
Confidence 55555554220 01233456666666
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.1e-10 Score=95.82 Aligned_cols=110 Identities=38% Similarity=0.536 Sum_probs=60.1
Q ss_pred ccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCC
Q 045504 115 ILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSN 194 (229)
Q Consensus 115 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 194 (229)
++.|++.++.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++...|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34455555555544555555555566666666555555555555555566666666555555555555555666666665
Q ss_pred ccccCccchHhhcc-CCCCeEEecCccCcCC
Q 045504 195 NNLSGAIPASLEKL-SYLEDLNLSFNKLEGE 224 (229)
Q Consensus 195 ~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~ 224 (229)
|.+.+..|..+... .++..+++.+|...+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 55555555544432 3444555555554433
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=2.4e-10 Score=95.46 Aligned_cols=90 Identities=37% Similarity=0.621 Sum_probs=85.0
Q ss_pred ccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecC
Q 045504 139 LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSF 218 (229)
Q Consensus 139 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 218 (229)
++.|++++|.+.+..|..+..+++|+.|++++|.++...|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999999988999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCC
Q 045504 219 NKLEGEIPTC 228 (229)
Q Consensus 219 n~~~~~~p~~ 228 (229)
|++.|.+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 9999999963
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.3e-10 Score=66.89 Aligned_cols=61 Identities=33% Similarity=0.479 Sum_probs=41.7
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccC
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKL 78 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 78 (229)
|+|+.|++++|.+....+..|..+++|++|++++|.+....+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4667777777777655556667777777777777777655556667777777777776653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=3e-10 Score=65.36 Aligned_cols=57 Identities=39% Similarity=0.552 Sum_probs=24.5
Q ss_pred ccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCc
Q 045504 139 LVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNN 195 (229)
Q Consensus 139 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 195 (229)
|++|++++|.+..+.+.+|.++++|++|++++|.++...+.+|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444444443344444444444444444443333334444444444444443
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.1e-11 Score=86.78 Aligned_cols=187 Identities=22% Similarity=0.189 Sum_probs=131.1
Q ss_pred CCCCccEEeccccccCC--CCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCC--Ccchhhcccccc
Q 045504 40 KLQKLQGLGLEDNKLEG--SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELT--SIPLTFWNLKDI 115 (229)
Q Consensus 40 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~L 115 (229)
.+..++++++.+|.+.+ .+...+..+|.|+.|+++.|++.+.....-....+|+.+.+.+..+. .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46789999999998763 22334568999999999999987443222246678999999988765 555567788899
Q ss_pred cEEEecCCccCCC--CCcCcCCc-CcccEEEEeccccccc--CCCCcCCCCccceeeecCccccCCC-chhccCCCcCcE
Q 045504 116 LQLNCSSNFLTGP--LPSEIGNL-KVLVIIDFSMNNFSGV--IPTEIGGLKNLEYLFLGYNRLQGSI-PNSFGDLISLKS 189 (229)
Q Consensus 116 ~~l~l~~~~~~~~--~~~~~~~~-~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 189 (229)
+.++++.|..... ..+..... +.+.++.+..|..... ....-+.++++..+.+.++.+.+.. ......++.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999988855422 11222222 4678888888765411 1112234578888899999776422 334566788888
Q ss_pred EecCCccccCc-cchHhhccCCCCeEEecCccCcCCCC
Q 045504 190 LNLSNNNLSGA-IPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 190 L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
|.++.+.+.+. ....+..++.|+.|.+.++++.+++-
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 99998888754 34578889999999999999887653
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-11 Score=93.16 Aligned_cols=183 Identities=25% Similarity=0.265 Sum_probs=132.7
Q ss_pred cCCCCccEEeccccccCCCCC--ccccCCCCccEEEccCccCCCCCC--ccccCCCCCcEEEecCCcCCCcchh--hccc
Q 045504 39 GKLQKLQGLGLEDNKLEGSIP--DNICRLTELYELELGGNKLSGSIP--ACFNNLASLRILSLGSNELTSIPLT--FWNL 112 (229)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~ 112 (229)
+++.+|+.+.+.++.+. ..+ .....+++++.|+++.|=+....+ .....+|+|+.|+++.|.+...-.. -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46789999999999876 333 245679999999999986653322 3346789999999999987743321 2256
Q ss_pred ccccEEEecCCccCCC-CCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCC-chhccCCCcCcEE
Q 045504 113 KDILQLNCSSNFLTGP-LPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PNSFGDLISLKSL 190 (229)
Q Consensus 113 ~~L~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 190 (229)
+.|+.|.+.+|+++-. ....+..+|+++.|.+..|....+......-+..|+.|+|++|.+-+.. ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7899999999998722 2234557899999999999533233333445678999999999775332 3456778999999
Q ss_pred ecCCccccCcc-chH-----hhccCCCCeEEecCccCc
Q 045504 191 NLSNNNLSGAI-PAS-----LEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 191 ~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~n~~~ 222 (229)
.++.|.+.+.. ++. ...+++|+.|++..|++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 99999887542 222 345799999999999984
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=8.9e-11 Score=86.56 Aligned_cols=183 Identities=23% Similarity=0.285 Sum_probs=134.8
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccC---CCCC--------------------ccccCCCC
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLE---GSIP--------------------DNICRLTE 67 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~--------------------~~~~~l~~ 67 (229)
|-.+.-+.+|..+.++.+.-. .+-+....-|.|+++.+.+..+. ..+| ..+..+..
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 333455788888888887654 33333334577888877765543 0111 11123457
Q ss_pred ccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecc
Q 045504 68 LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMN 147 (229)
Q Consensus 68 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 147 (229)
|+.++++.|.|+ ....+..-.|+++.++++.|++..+.. +..+++|..+++++|..+ .....-..+.++++|.++.|
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence 999999999988 667777788999999999999987765 888999999999999876 33333335678999999999
Q ss_pred cccccCCCCcCCCCccceeeecCccccC-CCchhccCCCcCcEEecCCccccC
Q 045504 148 NFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
.+... +.++.+=+|.+||+.+|.|.. .....++++|.|+++.+.+|.+..
T Consensus 363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88643 456667789999999999874 224568899999999999998864
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.88 E-value=8e-10 Score=80.39 Aligned_cols=209 Identities=17% Similarity=0.172 Sum_probs=142.1
Q ss_pred CCCCccEEEccCcccCCC----CcccccCCCCccEEeccccccCC----------CCCccccCCCCccEEEccCccCCCC
Q 045504 16 NLTNLTTIFFGGNKLNGS----IPITLGKLQKLQGLGLEDNKLEG----------SIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
-+..++.+++++|.++.. +...+++-.+|+..+++.--... .+..++..+|+|+.++++.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 367788899999998743 33445556778887777532210 1223456789999999999998866
Q ss_pred CCcc----ccCCCCCcEEEecCCcCCCcch--------------hhcccccccEEEecCCccCCCCC----cCcCCcCcc
Q 045504 82 IPAC----FNNLASLRILSLGSNELTSIPL--------------TFWNLKDILQLNCSSNFLTGPLP----SEIGNLKVL 139 (229)
Q Consensus 82 ~~~~----~~~l~~L~~l~l~~~~~~~~~~--------------~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~l 139 (229)
.+.. +++-..|.+|.+++|++..+.. ...+-|.|+.+.+..|++.+... ..+....++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 6643 4566789999999998773321 23456789999999888753211 223334578
Q ss_pred cEEEEecccccccCC-----CCcCCCCccceeeecCccccCC----CchhccCCCcCcEEecCCccccCccchHh-----
Q 045504 140 VIIDFSMNNFSGVIP-----TEIGGLKNLEYLFLGYNRLQGS----IPNSFGDLISLKSLNLSNNNLSGAIPASL----- 205 (229)
Q Consensus 140 ~~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----- 205 (229)
+++.+..|+|..... -.+..+.+|+.|++++|.++.. +..++..++.|++|.+.+|.+.......+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 999999998763211 1234678899999999987643 23345667889999999998876554432
Q ss_pred -hccCCCCeEEecCccCcCC
Q 045504 206 -EKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 206 -~~~~~L~~L~l~~n~~~~~ 224 (229)
...|+|..|...+|.+.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhcCCCccccccchhhhcCc
Confidence 2358888888888866544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=2.9e-09 Score=91.50 Aligned_cols=90 Identities=29% Similarity=0.397 Sum_probs=65.4
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCC
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLA 90 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 90 (229)
...|..++.|+.||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+......+.....+.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 344677888888888877555577888888888888888888876 6788888888888888877654434455555677
Q ss_pred CCcEEEecCCc
Q 045504 91 SLRILSLGSNE 101 (229)
Q Consensus 91 ~L~~l~l~~~~ 101 (229)
+|+++.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 88887775543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-08 Score=88.02 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=118.8
Q ss_pred CCCccEEEccCcccCCCCcccccCCCCccEEeccccc--cCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcE
Q 045504 17 LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK--LEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRI 94 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 94 (229)
....+.+.+.++.+. ..+... .+++|+.|-+..+. +.......|..+|.|+.|++++|.-.+.+|..++.+.+|++
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 345566666666654 333332 34578888888775 44344445677888888888877655678888888888888
Q ss_pred EEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc--ccCCCCcCCCCccceeeecCcc
Q 045504 95 LSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS--GVIPTEIGGLKNLEYLFLGYNR 172 (229)
Q Consensus 95 l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 172 (229)
|++.++.+..+|..+..+..|.+|++.........+.....+++|++|.+...... ......+..+.+|+.+......
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888888888888888888888888776654444556666788888888776422 1122223344445544443322
Q ss_pred ccCCCchhccCCCcC----cEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 173 LQGSIPNSFGDLISL----KSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
. .....+.....| ..+.+.++... ..+..+..+++|+.|.+.+|...
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 1 000111111111 12222222221 23344556667777777766655
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-09 Score=86.44 Aligned_cols=108 Identities=29% Similarity=0.364 Sum_probs=70.8
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
+..+.+|+.+++.++.+.+. ...+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 56677788888888877633 22256677888888888887633 2345666688888888877632 2334467777
Q ss_pred EEEecCCcCCCcchh-hcccccccEEEecCCccC
Q 045504 94 ILSLGSNELTSIPLT-FWNLKDILQLNCSSNFLT 126 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 126 (229)
.+++++|.+..+... ...+..++.+.+..+.+.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 777877777655443 456666776767666554
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=9.1e-10 Score=80.12 Aligned_cols=222 Identities=21% Similarity=0.203 Sum_probs=151.5
Q ss_pred CCCCCCCCCCCcc----ccCCCCccEEEccCcccC---C-------CCcccccCCCCccEEeccccccCCCCCcc----c
Q 045504 1 MSNCNVSGGIPEE----ITNLTNLTTIFFGGNKLN---G-------SIPITLGKLQKLQGLGLEDNKLEGSIPDN----I 62 (229)
Q Consensus 1 ~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~ 62 (229)
++||.|..+.... +++-.+|+...+++--.+ . ...+++..||+|+..+++.|.+....|.- +
T Consensus 37 LSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i 116 (388)
T COG5238 37 LSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLI 116 (388)
T ss_pred ccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHH
Confidence 5778887665444 456688888887754322 1 23356678899999999999987655553 3
Q ss_pred cCCCCccEEEccCccCCCCCCccc-------------cCCCCCcEEEecCCcCCCcch-----hhcccccccEEEecCCc
Q 045504 63 CRLTELYELELGGNKLSGSIPACF-------------NNLASLRILSLGSNELTSIPL-----TFWNLKDILQLNCSSNF 124 (229)
Q Consensus 63 ~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~l~l~~~~~~~~~~-----~~~~~~~L~~l~l~~~~ 124 (229)
+....|.+|.+.+|.+....-.-+ ..-|.|+.+....|++...+. .+.....|+.+.+..|.
T Consensus 117 s~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg 196 (388)
T COG5238 117 SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196 (388)
T ss_pred hcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC
Confidence 567789999999998764322211 345889999999998876554 23344688999999988
Q ss_pred cCCCCC-----cCcCCcCcccEEEEeccccccc----CCCCcCCCCccceeeecCccccCCCchhc----c--CCCcCcE
Q 045504 125 LTGPLP-----SEIGNLKVLVIIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSIPNSF----G--DLISLKS 189 (229)
Q Consensus 125 ~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~--~~~~L~~ 189 (229)
+.-... ..+.++++|+.||+++|.++.. ....+..++.|+.|.+.+|-++.....++ . ..++|..
T Consensus 197 Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~ 276 (388)
T COG5238 197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMP 276 (388)
T ss_pred cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccc
Confidence 763211 2455779999999999998733 33445677889999999998876544432 1 2478888
Q ss_pred EecCCccccCcc------chH-hhccCCCCeEEecCccCc
Q 045504 190 LNLSNNNLSGAI------PAS-LEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 190 L~l~~~~~~~~~------~~~-l~~~~~L~~L~l~~n~~~ 222 (229)
|-...|.+.... +.. -..+|-|..|.+.+|.+.
T Consensus 277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 888877664321 111 134567777777777664
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-10 Score=84.91 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=83.8
Q ss_pred CccEEeccccccCC-CCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCc-CCCcc--hhhcccccccEE
Q 045504 43 KLQGLGLEDNKLEG-SIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNE-LTSIP--LTFWNLKDILQL 118 (229)
Q Consensus 43 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~--~~~~~~~~L~~l 118 (229)
+||+++++...++. .+-..+..+.+|+.|.++++.+.+.....+.+-.+|+.++++.+. ++... --+.++..|.++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666655541 111123345566666666666654444555555666666665542 33222 134556666666
Q ss_pred EecCCccCCCCCc-CcCC-cCcccEEEEecccc--c-ccCCCCcCCCCccceeeecCccc-cCCCchhccCCCcCcEEec
Q 045504 119 NCSSNFLTGPLPS-EIGN-LKVLVIIDFSMNNF--S-GVIPTEIGGLKNLEYLFLGYNRL-QGSIPNSFGDLISLKSLNL 192 (229)
Q Consensus 119 ~l~~~~~~~~~~~-~~~~-~~~l~~l~l~~~~~--~-~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l 192 (229)
.+++|........ .+.. -++++.|+++++.- . .....-.+.+++|..||++++.. +.....++-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6666654322111 1111 13455555555421 1 01111123456666666666532 2222334445566666666
Q ss_pred CCccccCccch---HhhccCCCCeEEecCc
Q 045504 193 SNNNLSGAIPA---SLEKLSYLEDLNLSFN 219 (229)
Q Consensus 193 ~~~~~~~~~~~---~l~~~~~L~~L~l~~n 219 (229)
+-|... .|. .+...|.|.+|++.+|
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 655432 222 2344456666665554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.4e-10 Score=85.33 Aligned_cols=193 Identities=20% Similarity=0.170 Sum_probs=104.9
Q ss_pred CccEEEccCcccCC-CCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCcc-CCCCCC-ccccCCCCCcEE
Q 045504 19 NLTTIFFGGNKLNG-SIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNK-LSGSIP-ACFNNLASLRIL 95 (229)
Q Consensus 19 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~l 95 (229)
.|+++|++...++- ..-..+..|.+|+-|.+.+.++.+.+...++.-.+|+.|+++.+. ++.... ..+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777777666542 223344566777777777777765555556666677777777653 221111 234566777777
Q ss_pred EecCCcCCC--cchhhccc-ccccEEEecCCccC--CC-CCcCcCCcCcccEEEEeccc-ccccCCCCcCCCCccceeee
Q 045504 96 SLGSNELTS--IPLTFWNL-KDILQLNCSSNFLT--GP-LPSEIGNLKVLVIIDFSMNN-FSGVIPTEIGGLKNLEYLFL 168 (229)
Q Consensus 96 ~l~~~~~~~--~~~~~~~~-~~L~~l~l~~~~~~--~~-~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l 168 (229)
+++.|.... ......+. ++|+.+.+++++.. .. .......++++..||++++. +.......|..++-|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777665542 11122222 35666666665432 11 11223356777777777764 22222334556677777777
Q ss_pred cCccccCCCchh---ccCCCcCcEEecCCccccCccchHhhccCCCCe
Q 045504 169 GYNRLQGSIPNS---FGDLISLKSLNLSNNNLSGAIPASLEKLSYLED 213 (229)
Q Consensus 169 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 213 (229)
+.|.. ..|.. +...+.|.+|++.++.=.....-....+++|+.
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 77632 22332 344567777777666433222223344555554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=3.2e-10 Score=92.61 Aligned_cols=128 Identities=30% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeec
Q 045504 90 ASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (229)
-+|...+++.|.+.....++.-++.+++|+++.|.+++. ..+..+++|++||+++|.+....--...++ .|..|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 356667777777776666777777788888888877644 366667788888888887663322222334 37788888
Q ss_pred CccccCCCchhccCCCcCcEEecCCccccCcc-chHhhccCCCCeEEecCccCc
Q 045504 170 YNRLQGSIPNSFGDLISLKSLNLSNNNLSGAI-PASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+|.++.. .-+.++.+|..||++.|-+.+-. -..+..+..|++|++.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8776522 23456777888888887765421 234556677788888888765
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=3.2e-09 Score=84.89 Aligned_cols=195 Identities=30% Similarity=0.355 Sum_probs=108.0
Q ss_pred CCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEE
Q 045504 17 LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILS 96 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 96 (229)
+..++.+.++.+.+.. ....+..+.+|..+++..+.+.+. ...+..+++|++|++++|.|... ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444555555555542 223356677888888888887632 22255678888888888887743 2344556688888
Q ss_pred ecCCcCCCcchhhcccccccEEEecCCccCCCCC-cCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC
Q 045504 97 LGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLP-SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175 (229)
Q Consensus 97 l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (229)
+.+|.+..+.. +..+..|+.+++.++++...-+ . ...+.+++.+.+..|.+... ..+.....+..+++..|.++.
T Consensus 147 l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 147 LSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred eccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 88887776543 3336777777788877763322 1 35566777777777765532 112222233333444444432
Q ss_pred CCchhccCCC--cCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 176 SIPNSFGDLI--SLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 176 ~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
..+ +.... .|+.+++.++.+... +..+..+..+..+++.+|.+.
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 111 11111 255666666655422 123444555555555555443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.51 E-value=2.5e-07 Score=64.66 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=91.0
Q ss_pred ccEEEccCcccCCCCccccc-CCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEec
Q 045504 20 LTTIFFGGNKLNGSIPITLG-KLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLG 98 (229)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 98 (229)
-+.+++++.++... .. ++ -..+...++++.|++. ....|..++.|++|.+.+|.|++..|..-.-+++|..|.+.
T Consensus 21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch-hh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 45677777666421 11 22 2456778899998874 33447788899999999999997777655667889999999
Q ss_pred CCcCCCcch--hhcccccccEEEecCCccCCC---CCcCcCCcCcccEEEEeccc
Q 045504 99 SNELTSIPL--TFWNLKDILQLNCSSNFLTGP---LPSEIGNLKVLVIIDFSMNN 148 (229)
Q Consensus 99 ~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~l~~l~l~~~~ 148 (229)
+|++..+.+ .+..+++|+.+.+-+|.+... ....+..++++++||+++-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 998886654 567788999999988887633 22456677899999988754
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=4.6e-09 Score=68.76 Aligned_cols=104 Identities=23% Similarity=0.310 Sum_probs=56.7
Q ss_pred ccEEEccCcccCCCCcccccCC---CCccEEeccccccCCCCCccc-cCCCCccEEEccCccCCCCCCccccCCCCCcEE
Q 045504 20 LTTIFFGGNKLNGSIPITLGKL---QKLQGLGLEDNKLEGSIPDNI-CRLTELYELELGGNKLSGSIPACFNNLASLRIL 95 (229)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 95 (229)
+..+++++|++- .++++.+.+ ..|+..++++|.+. .+|..| ..++.++.+++.+|.+. ..|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555666553 233433332 33444466666655 333333 34456666666666665 445556666666666
Q ss_pred EecCCcCCCcchhhcccccccEEEecCCccC
Q 045504 96 SLGSNELTSIPLTFWNLKDILQLNCSSNFLT 126 (229)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 126 (229)
++..|.+...|..+..+.++..++..++.+.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 6666666666665555666666665555543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3e-08 Score=73.31 Aligned_cols=199 Identities=19% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCCCccEEEccCcccCC--CCcccccCCCCccEEeccccccCCCCCccc-cCCCCccEEEccCccCCCCC-CccccCCCC
Q 045504 16 NLTNLTTIFFGGNKLNG--SIPITLGKLQKLQGLGLEDNKLEGSIPDNI-CRLTELYELELGGNKLSGSI-PACFNNLAS 91 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~ 91 (229)
.+..++.+|+.+|.++. .+...+.++|+|++|+++.|.+... ...+ ....+|+.|.+.+..+.... ...+..+|+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 56788889999999885 2344567899999999999987632 2223 35668999998887765322 234567888
Q ss_pred CcEEEecCCcCCCc---chhhccc-ccccEEEecCCccCCC--CCcCcCCcCcccEEEEeccccccc-CCCCcCCCCccc
Q 045504 92 LRILSLGSNELTSI---PLTFWNL-KDILQLNCSSNFLTGP--LPSEIGNLKVLVIIDFSMNNFSGV-IPTEIGGLKNLE 164 (229)
Q Consensus 92 L~~l~l~~~~~~~~---~~~~~~~-~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~ 164 (229)
++.++++.|....+ ......+ +.+.+++...|..... .-....-+|++..+-+..|.+... ....+...+.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 99998888754422 1122222 2455555555543211 001112245666666666654321 222334445555
Q ss_pred eeeecCccccC-CCchhccCCCcCcEEecCCccccCccch------HhhccCCCCeEE
Q 045504 165 YLFLGYNRLQG-SIPNSFGDLISLKSLNLSNNNLSGAIPA------SLEKLSYLEDLN 215 (229)
Q Consensus 165 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~ 215 (229)
.|+++.+.+.+ ...+.+..++.|..|.+.++.+.+.... .++.+++++.|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 67777776653 2244566777777777777776554221 234455555553
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=9.3e-10 Score=89.97 Aligned_cols=127 Identities=26% Similarity=0.266 Sum_probs=91.9
Q ss_pred CccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEec
Q 045504 67 ELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM 146 (229)
Q Consensus 67 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 146 (229)
.|...++++|.+. ....++.-++.++.|+++.|.+.... .+..+++|++|++++|... ..|..-..-.+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 4666666777766 45566667788999999999888766 7788899999999999887 3343322223489999999
Q ss_pred ccccccCCCCcCCCCccceeeecCccccCC-CchhccCCCcCcEEecCCcccc
Q 045504 147 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGS-IPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
|.++.. ..+.++.+|+.||+++|-+.+. -...+..+..|+.|+|.||.+-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 987643 3356788899999999977532 1223455678899999998773
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=3.7e-08 Score=64.57 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCcEEEecCCcCCCcchhhcc-cccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeee
Q 045504 90 ASLRILSLGSNELTSIPLTFWN-LKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFL 168 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 168 (229)
..|+.+++++|.+..+|..+.. .+.++.+.+..|.+. ..|..+..++.|+.++++.|.+. ..|..+..+.++.+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4455555666665555554432 234555555555544 23333555555555555555544 23333333444444444
Q ss_pred cCccc
Q 045504 169 GYNRL 173 (229)
Q Consensus 169 ~~~~~ 173 (229)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.26 E-value=1.6e-06 Score=60.70 Aligned_cols=125 Identities=22% Similarity=0.170 Sum_probs=71.4
Q ss_pred ccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecc
Q 045504 68 LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMN 147 (229)
Q Consensus 68 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 147 (229)
-+++++.+.++....- .-........+++.+|.+..++ .+..++.|..|.+..|+++...|..-..++++.+|.+.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455555555441111 1112345566777777665433 3455667777777777777555544444566777777777
Q ss_pred cccccC-CCCcCCCCccceeeecCccccCCC---chhccCCCcCcEEecCC
Q 045504 148 NFSGVI-PTEIGGLKNLEYLFLGYNRLQGSI---PNSFGDLISLKSLNLSN 194 (229)
Q Consensus 148 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 194 (229)
.+.... -.-+..++.|++|.+-+|.++..- ...+..+++|+.||.++
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 665321 122456677777777777665321 23355667777777654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.8e-06 Score=45.69 Aligned_cols=36 Identities=44% Similarity=0.695 Sum_probs=15.7
Q ss_pred cCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 186 SLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+|++|++++|.+++ ++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34445555554442 2223444555555555555444
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.18 E-value=6.8e-06 Score=54.68 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=50.1
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCC
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLA 90 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 90 (229)
..+|.++.+|+.+.+.. .+......+|..+..|+.+.+..+ +......+|..+++++.+.+.. .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34577777777777764 344355566677767777777663 4444455566666677777754 33323344555666
Q ss_pred CCcEEEecCCcCCCcch-hhcccccccEEEecC
Q 045504 91 SLRILSLGSNELTSIPL-TFWNLKDILQLNCSS 122 (229)
Q Consensus 91 ~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~ 122 (229)
+++.+.+..+ +..++. .+... .++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6766666443 433333 22333 555555443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=3.6e-06 Score=44.50 Aligned_cols=38 Identities=45% Similarity=0.633 Sum_probs=27.1
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
++|++|++++|.++ .++..++++++|++|++++|.+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36778888888887 556567788888888888887764
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=7.7e-07 Score=75.01 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCccEEeccccccC--CCCCccccCCCCccEEEccCccCCCC-CCccccCCCCCcEEEecCCcCCCcchhhcccccccEE
Q 045504 42 QKLQGLGLEDNKLE--GSIPDNICRLTELYELELGGNKLSGS-IPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQL 118 (229)
Q Consensus 42 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l 118 (229)
.+|++|++++.... +........+|+|++|.+.+-.+... +.....++|+|+.|+++++.++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777777764421 11111123467777777776554322 223345677777777777777766 566677777777
Q ss_pred EecCCccCCC-CCcCcCCcCcccEEEEeccccccc------CCCCcCCCCccceeeecCccccCCCchhc-cCCCcCcEE
Q 045504 119 NCSSNFLTGP-LPSEIGNLKVLVIIDFSMNNFSGV------IPTEIGGLKNLEYLFLGYNRLQGSIPNSF-GDLISLKSL 190 (229)
Q Consensus 119 ~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 190 (229)
.+..-.+... .-..+..+++|+.||+++...... .-..-..+|.|+.||.+++.+.....+.+ ..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 7766555421 112444667777777777643311 11222346788888888887764433332 223444444
Q ss_pred e
Q 045504 191 N 191 (229)
Q Consensus 191 ~ 191 (229)
.
T Consensus 281 ~ 281 (699)
T KOG3665|consen 281 A 281 (699)
T ss_pred h
Confidence 3
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=5.6e-07 Score=75.80 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=92.0
Q ss_pred CCccEEEccCccCCCC-CCccc-cCCCCCcEEEecCCcCC--CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccE
Q 045504 66 TELYELELGGNKLSGS-IPACF-NNLASLRILSLGSNELT--SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVI 141 (229)
Q Consensus 66 ~~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~l~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 141 (229)
.+|++|++++...-.. .+..+ ..+|.|+.|.+.+-.+. ++.....++++|..|++++.++++. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4688888877543211 12223 34788888888775554 3344566788888889888888744 56777888888
Q ss_pred EEEecccccc-cCCCCcCCCCccceeeecCccccCCC------chhccCCCcCcEEecCCccccCccch-HhhccCCCCe
Q 045504 142 IDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLQGSI------PNSFGDLISLKSLNLSNNNLSGAIPA-SLEKLSYLED 213 (229)
Q Consensus 142 l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~ 213 (229)
|.+.+-.+.. ..-..+..+++|+.||++.....+.. .+.-..+|+|+.||.+++.+.+..-. .+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8877766552 11123456888888888876543211 11112368888899888877654333 2233344444
Q ss_pred EE
Q 045504 214 LN 215 (229)
Q Consensus 214 L~ 215 (229)
+-
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.08 E-value=3.5e-05 Score=51.25 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=24.9
Q ss_pred cCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCC
Q 045504 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSY 210 (229)
Q Consensus 131 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 210 (229)
..+..+++++.+.+.. .+.......|..+++++.+.+..+ +.......+.++ +++.+.+.. .+.......+.+|++
T Consensus 52 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 52 NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 3444444455555533 222233344445555555555443 222223344444 555555543 222233334444444
Q ss_pred C
Q 045504 211 L 211 (229)
Q Consensus 211 L 211 (229)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 4
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=7e-05 Score=59.04 Aligned_cols=132 Identities=16% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCc-cCCCCCCccccCCCCCcE
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGN-KLSGSIPACFNNLASLRI 94 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~ 94 (229)
.+++++.|++++|.+. .+|. --.+|++|.+.+|.--...|..+ .++|+.|.+.+| .+. ..| ..|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccce
Confidence 4677888888887666 4442 12357888887755322444433 246778887776 332 222 34566
Q ss_pred EEecCCcCC---CcchhhcccccccEEEecCCccC--CCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeec
Q 045504 95 LSLGSNELT---SIPLTFWNLKDILQLNCSSNFLT--GPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169 (229)
Q Consensus 95 l~l~~~~~~---~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (229)
|.+..+... .+|. .|+.|.+...... ...+..+ .++|++|++++|... ..|..+. .+|++|.++
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 666544332 2332 3455555332211 0011111 146788888777644 2333222 467777776
Q ss_pred Cc
Q 045504 170 YN 171 (229)
Q Consensus 170 ~~ 171 (229)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=8.6e-07 Score=65.18 Aligned_cols=102 Identities=25% Similarity=0.324 Sum_probs=76.9
Q ss_pred cccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCC-chhccCCCcCc
Q 045504 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PNSFGDLISLK 188 (229)
Q Consensus 110 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 188 (229)
+.+.+.+.|.+|++++.+. .....++.|+.|.|+.|+|+.. ..+..+++|+.|.|..|.|.+.. ...+.++++|+
T Consensus 16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3456677888888888744 4556788999999999999865 34778999999999999887532 33467889999
Q ss_pred EEecCCccccCccc-----hHhhccCCCCeEE
Q 045504 189 SLNLSNNNLSGAIP-----ASLEKLSYLEDLN 215 (229)
Q Consensus 189 ~L~l~~~~~~~~~~-----~~l~~~~~L~~L~ 215 (229)
.|+|..|.--+..+ ..+..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998876543322 3567788888875
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00034 Score=55.31 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEecccc-ccCCCCCccccCCCCccEEEccCccCCCCCCccccCC-CCCcEE
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDN-KLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNL-ASLRIL 95 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l 95 (229)
++|+.|.+.+|.-....|..+ .++|+.|.+++| .+. .+| ++|+.|++..+.... +..+ ++|+.|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n~~~~-----L~~LPssLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGSATDS-----IKNVPNGLTSL 137 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEEeCCCCCcc-----cccCcchHhhe
Confidence 469999999864433556544 258999999998 443 333 357778776654331 2222 345666
Q ss_pred EecCCc-C--CCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecc
Q 045504 96 SLGSNE-L--TSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMN 147 (229)
Q Consensus 96 ~l~~~~-~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 147 (229)
.+.++. . ..++. .-.++|+.|.+.+|... ..|..+. .+|+.|.++.+
T Consensus 138 ~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 138 SINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 654322 1 11111 11257888888877754 3343333 47888888765
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=8e-05 Score=54.38 Aligned_cols=86 Identities=26% Similarity=0.242 Sum_probs=47.5
Q ss_pred CcCCcCcccEEEEecc--cccccCCCCcCCCCccceeeecCccccC-CCchhccCCCcCcEEecCCccccCc---cchHh
Q 045504 132 EIGNLKVLVIIDFSMN--NFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPNSFGDLISLKSLNLSNNNLSGA---IPASL 205 (229)
Q Consensus 132 ~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l 205 (229)
.+..+++|++|.++.| .+..-+......+++|+++++++|.+.. .....+..+.+|..|++.+|..+.. -...+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3345567777777777 3433333334455777777777777652 1112234456677777777755432 22233
Q ss_pred hccCCCCeEEec
Q 045504 206 EKLSYLEDLNLS 217 (229)
Q Consensus 206 ~~~~~L~~L~l~ 217 (229)
.-+++|+++|-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 445555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00047 Score=50.49 Aligned_cols=87 Identities=24% Similarity=0.271 Sum_probs=61.0
Q ss_pred CcCcccEEEEecccccccCCCCcCCCCccceeeecCc--cccCCCchhccCCCcCcEEecCCccccCc-cchHhhccCCC
Q 045504 135 NLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN--RLQGSIPNSFGDLISLKSLNLSNNNLSGA-IPASLEKLSYL 211 (229)
Q Consensus 135 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L 211 (229)
.+.+++.+++.+..++.. ..+..+++|++|.+++| .+...+..-...+++|+++.+++|.+... ....+..+++|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344566666655554422 33556789999999999 66544444445669999999999998742 23356778899
Q ss_pred CeEEecCccCcC
Q 045504 212 EDLNLSFNKLEG 223 (229)
Q Consensus 212 ~~L~l~~n~~~~ 223 (229)
..|++.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 999999997653
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=4e-05 Score=62.68 Aligned_cols=109 Identities=18% Similarity=0.107 Sum_probs=52.1
Q ss_pred CCCccEEEccCcccCCC--CcccccCCCCccEEecccc-ccCCCCC----ccccCCCCccEEEccCcc-CCCCCCccccC
Q 045504 17 LTNLTTIFFGGNKLNGS--IPITLGKLQKLQGLGLEDN-KLEGSIP----DNICRLTELYELELGGNK-LSGSIPACFNN 88 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~ 88 (229)
++.|+.+.+.++.-... .......++.|+.|++.++ ......+ .....+.+|+++++..+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2233345666777776652 1110111 112234566666666655 33222222222
Q ss_pred -CCCCcEEEecCCc-CC--CcchhhcccccccEEEecCCcc
Q 045504 89 -LASLRILSLGSNE-LT--SIPLTFWNLKDILQLNCSSNFL 125 (229)
Q Consensus 89 -l~~L~~l~l~~~~-~~--~~~~~~~~~~~L~~l~l~~~~~ 125 (229)
+++|+.+.+.++. ++ .+......++.|++++++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5666666655554 33 2222334556666666665543
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00014 Score=51.21 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=45.1
Q ss_pred cccEEEEecccccccCCCCcCCCCccceeeecCcc-ccCCCchhccC-CCcCcEEecCCc-cccCccchHhhccCCCCeE
Q 045504 138 VLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPNSFGD-LISLKSLNLSNN-NLSGAIPASLEKLSYLEDL 214 (229)
Q Consensus 138 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 214 (229)
.++.++.+++.+....-..+.+++.++.|.+.++. +.+....-+++ .++|+.|++++| .+++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35666666666665555556666666666666652 22211222222 356677777766 4555555566666666666
Q ss_pred EecC
Q 045504 215 NLSF 218 (229)
Q Consensus 215 ~l~~ 218 (229)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=0.00021 Score=58.41 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=64.7
Q ss_pred ccCCCCccEEEccCc-ccCCCC----cccccCCCCccEEeccccc-cCCCCCcccc-CCCCccEEEccCcc-CCCCCCc-
Q 045504 14 ITNLTNLTTIFFGGN-KLNGSI----PITLGKLQKLQGLGLEDNK-LEGSIPDNIC-RLTELYELELGGNK-LSGSIPA- 84 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~- 84 (229)
...+++|+.|++.++ ...... ......+++|+.++++++. ++...-..++ .+++|+.|.+..+. ++...-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 457899999999873 211111 1233457899999999988 5533333333 37899999977666 4433222
Q ss_pred cccCCCCCcEEEecCCcCC-C--cchhhcccccccEEE
Q 045504 85 CFNNLASLRILSLGSNELT-S--IPLTFWNLKDILQLN 119 (229)
Q Consensus 85 ~~~~l~~L~~l~l~~~~~~-~--~~~~~~~~~~L~~l~ 119 (229)
....++.|+.+++..+... + +......+++++.+.
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 2355788999999877553 1 222233455555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=3.5e-05 Score=56.95 Aligned_cols=79 Identities=32% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCC-CccccCCCCCcEEE
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSI-PACFNNLASLRILS 96 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~ 96 (229)
.+.+.|++.+|.+..+ .....++.|+.|.|+-|+|....+ +..+++|++|++..|.|.+.. -..+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4455566666665422 223456666777777666653222 455666677777666665221 12345666666666
Q ss_pred ecCC
Q 045504 97 LGSN 100 (229)
Q Consensus 97 l~~~ 100 (229)
+..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 6544
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.50 E-value=7.6e-05 Score=58.10 Aligned_cols=63 Identities=22% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCCCccceeeecCc-cccCCCchhcc----CCCcCcEEecCCcccc-CccchHhhccCCCCeEEecCcc
Q 045504 158 GGLKNLEYLFLGYN-RLQGSIPNSFG----DLISLKSLNLSNNNLS-GAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 158 ~~~~~L~~L~l~~~-~~~~~~~~~~~----~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
.+++.|+.+.++.+ .++++....+. ....|+.+.+.++..+ +..-..+..|++|+.+++-+|+
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34455555555544 22322222221 2345556666665432 3344455666666666666653
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.00094 Score=29.37 Aligned_cols=18 Identities=50% Similarity=0.602 Sum_probs=11.7
Q ss_pred CCCeEEecCccCcCCCCCC
Q 045504 210 YLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 210 ~L~~L~l~~n~~~~~~p~~ 228 (229)
+|++||+++|.++ .+|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 3567777777666 66654
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.45 E-value=0.00032 Score=54.76 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=24.7
Q ss_pred CCCCccEEEccCc-ccCCCCcc-cccCCCCccEEeccccc
Q 045504 16 NLTNLTTIFFGGN-KLNGSIPI-TLGKLQKLQGLGLEDNK 53 (229)
Q Consensus 16 ~~~~L~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~l~~~~ 53 (229)
.|+++++|++..| .++...-+ .-..+++|+++++++|.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 5778888888775 44432223 23467888888888875
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.81 E-value=0.0062 Score=24.82 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=6.5
Q ss_pred CCCeEEecCccCc
Q 045504 210 YLEDLNLSFNKLE 222 (229)
Q Consensus 210 ~L~~L~l~~n~~~ 222 (229)
+|+.|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0017 Score=45.86 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=59.3
Q ss_pred ccccEEEecCCccCCCCCcCcCCcCcccEEEEecccc-cccCCCCc-CCCCccceeeecCc-cccCCCchhccCCCcCcE
Q 045504 113 KDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNF-SGVIPTEI-GGLKNLEYLFLGYN-RLQGSIPNSFGDLISLKS 189 (229)
Q Consensus 113 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 189 (229)
..++.++-+.+.+..+.-+.+..++.++.|.+.+|.- ....-..+ ...++|+.|++++| .|++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3566777777776655556667778888888888753 21111111 24578999999988 688787888888999999
Q ss_pred EecCCcc
Q 045504 190 LNLSNNN 196 (229)
Q Consensus 190 L~l~~~~ 196 (229)
|.+.+-.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9887653
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.83 E-value=0.013 Score=26.17 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=10.9
Q ss_pred CcCcEEecCCccccCccchHh
Q 045504 185 ISLKSLNLSNNNLSGAIPASL 205 (229)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~l 205 (229)
++|++|++++|.+++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666655544443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.22 E-value=9.6e-05 Score=60.02 Aligned_cols=180 Identities=26% Similarity=0.282 Sum_probs=93.0
Q ss_pred ccEEeccccccCCC----CCccccCCCCccEEEccCccCCCCCCcc----ccCC-CCCcEEEecCCcCCC-----cchhh
Q 045504 44 LQGLGLEDNKLEGS----IPDNICRLTELYELELGGNKLSGSIPAC----FNNL-ASLRILSLGSNELTS-----IPLTF 109 (229)
Q Consensus 44 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~l~l~~~~~~~-----~~~~~ 109 (229)
+..+.+.+|.+... +..++...+.|+.|+++.|.+....... +... ..++++.+..+.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666665532 2223345667777777777766322211 1121 345556665555542 22234
Q ss_pred cccccccEEEecCCccCC----CCCcCcC----CcCcccEEEEeccccccc----CCCCcCCCCc-cceeeecCccccCC
Q 045504 110 WNLKDILQLNCSSNFLTG----PLPSEIG----NLKVLVIIDFSMNNFSGV----IPTEIGGLKN-LEYLFLGYNRLQGS 176 (229)
Q Consensus 110 ~~~~~L~~l~l~~~~~~~----~~~~~~~----~~~~l~~l~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~ 176 (229)
.....++.+++..|.+.. ..+..+. ...+++++.+.++.++.. ....+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 444555555555554421 1112222 345677777777765421 1122233333 45577777766543
Q ss_pred Cchh----ccCC-CcCcEEecCCccccCc----cchHhhccCCCCeEEecCccCcC
Q 045504 177 IPNS----FGDL-ISLKSLNLSNNNLSGA----IPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 177 ~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
.... +... ..+++++++.|.+++. .+..+..++.++++.+++|++.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2222 2222 4667777777777654 33445566777778777777654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.90 E-value=0.23 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=6.7
Q ss_pred CCccEEEccCcccC
Q 045504 18 TNLTTIFFGGNKLN 31 (229)
Q Consensus 18 ~~L~~L~l~~~~~~ 31 (229)
++|++|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.90 E-value=0.23 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=6.7
Q ss_pred CCccEEEccCcccC
Q 045504 18 TNLTTIFFGGNKLN 31 (229)
Q Consensus 18 ~~L~~L~l~~~~~~ 31 (229)
++|++|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.69 E-value=0.19 Score=23.34 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=13.3
Q ss_pred CcCcEEecCCccccCccchHh
Q 045504 185 ISLKSLNLSNNNLSGAIPASL 205 (229)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~l 205 (229)
++|++|+|++|.+.+.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456777777777765554444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.23 E-value=0.0025 Score=52.01 Aligned_cols=157 Identities=24% Similarity=0.228 Sum_probs=101.7
Q ss_pred ccEEEccCccCCCCCC----ccccCCCCCcEEEecCCcCCCc-----chhhccc-ccccEEEecCCccCCCC----CcCc
Q 045504 68 LYELELGGNKLSGSIP----ACFNNLASLRILSLGSNELTSI-----PLTFWNL-KDILQLNCSSNFLTGPL----PSEI 133 (229)
Q Consensus 68 L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~-~~L~~l~l~~~~~~~~~----~~~~ 133 (229)
+..+.+.+|.+..... ..+...+.|..+++++|.+... ...+... ..++.+.+..|..++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6778888888774433 3456678899999999988732 1123332 45666777777766432 2344
Q ss_pred CCcCcccEEEEeccccccc----CCCCcC----CCCccceeeecCccccCCCc----hhccCCCc-CcEEecCCccccCc
Q 045504 134 GNLKVLVIIDFSMNNFSGV----IPTEIG----GLKNLEYLFLGYNRLQGSIP----NSFGDLIS-LKSLNLSNNNLSGA 200 (229)
Q Consensus 134 ~~~~~l~~l~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~~~~~ 200 (229)
.....++.++++.|.+... .+..+. ...++++|++..+.+++... .+++..+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4567788888888876421 223333 46789999999998774222 22333444 67799999988765
Q ss_pred cc----hHhhcc-CCCCeEEecCccCcCC
Q 045504 201 IP----ASLEKL-SYLEDLNLSFNKLEGE 224 (229)
Q Consensus 201 ~~----~~l~~~-~~L~~L~l~~n~~~~~ 224 (229)
.. ..+... +.+++++++.|++++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 33 333444 6779999999998753
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.26 E-value=0.014 Score=42.54 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=52.2
Q ss_pred cccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcE
Q 045504 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKS 189 (229)
Q Consensus 110 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 189 (229)
......+.++++.++.. .....++.++.++.++++.|.+. ..|..+.....+..+++..|..+ ..|.++.+.+.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33445556666666554 22344555566777777776665 44555555555555666666554 56666777777777
Q ss_pred EecCCccccCc
Q 045504 190 LNLSNNNLSGA 200 (229)
Q Consensus 190 L~l~~~~~~~~ 200 (229)
+++.++.+...
T Consensus 116 ~e~k~~~~~~~ 126 (326)
T KOG0473|consen 116 NEQKKTEFFRK 126 (326)
T ss_pred hhhccCcchHH
Confidence 77777766543
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.08 E-value=0.56 Score=21.41 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=9.9
Q ss_pred CCCeEEecCccCcCCCCC
Q 045504 210 YLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 210 ~L~~L~l~~n~~~~~~p~ 227 (229)
+|+.|++++|.++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666655 4443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.87 E-value=0.021 Score=41.71 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=64.3
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
++.+...+.||++.+.+. .....|..+..+..|+++.+++. ..|..+.....+..++...|+.. ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 556777888888888765 44556666778888888888775 67777766666777777777665 7788888888888
Q ss_pred EEEecCCcCC
Q 045504 94 ILSLGSNELT 103 (229)
Q Consensus 94 ~l~l~~~~~~ 103 (229)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888776543
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.15 E-value=0.81 Score=20.66 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=7.1
Q ss_pred CcCcEEecCCcc
Q 045504 185 ISLKSLNLSNNN 196 (229)
Q Consensus 185 ~~L~~L~l~~~~ 196 (229)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.22 E-value=1.5 Score=20.00 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=9.2
Q ss_pred CcCcEEecCCcccc
Q 045504 185 ISLKSLNLSNNNLS 198 (229)
Q Consensus 185 ~~L~~L~l~~~~~~ 198 (229)
.+|++|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777664
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.93 E-value=1.2 Score=36.87 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred CcCcccEEEEeccccccc--CCCCcCCCCccceeeecCc--cccCCCchhccC--CCcCcEEecCCccccC
Q 045504 135 NLKVLVIIDFSMNNFSGV--IPTEIGGLKNLEYLFLGYN--RLQGSIPNSFGD--LISLKSLNLSNNNLSG 199 (229)
Q Consensus 135 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~--~~~L~~L~l~~~~~~~ 199 (229)
+.+.+..+++++|.+... ....-...|.|+.|+|++| .+.+. ..+.+ ...|++|.+.+|.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 345677777887765432 2222345577888888887 33321 22222 3567888888887754
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.52 E-value=1.6 Score=36.22 Aligned_cols=65 Identities=31% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCCCccceeeecCccccCCC--chhccCCCcCcEEecCCc--cccCccchHhh--ccCCCCeEEecCccCcCC
Q 045504 158 GGLKNLEYLFLGYNRLQGSI--PNSFGDLISLKSLNLSNN--NLSGAIPASLE--KLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~ 224 (229)
.+.+.+..+.+++|++.+.. -..-...|+|+.|+|++| .+.+ ...+. +..-|++|-+.||++.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 45678889999999876421 222244689999999999 4432 22232 335678999999988754
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.95 E-value=29 Score=15.84 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=8.3
Q ss_pred ccCCCCccEEEcc
Q 045504 14 ITNLTNLTTIFFG 26 (229)
Q Consensus 14 ~~~~~~L~~L~l~ 26 (229)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 4556777777654
Done!