Query 045504
Match_columns 229
No_of_seqs 135 out of 2184
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-33 9.4E-38 214.2 13.8 225 2-228 58-287 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-31 4.2E-36 227.2 19.1 226 2-227 426-722 (768)
3 3rgz_A Protein brassinosteroid 100.0 2.7E-31 9.1E-36 225.2 18.6 228 1-228 401-699 (768)
4 4fcg_A Uncharacterized protein 100.0 7.4E-30 2.5E-34 196.3 18.7 217 2-222 89-314 (328)
5 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-31 1.5E-35 202.0 9.5 216 4-222 87-304 (313)
6 1ozn_A Reticulon 4 receptor; N 100.0 7E-29 2.4E-33 187.5 19.5 209 17-225 31-241 (285)
7 3v47_A TOLL-like receptor 5B a 100.0 3.3E-29 1.1E-33 200.9 18.2 117 110-226 296-412 (455)
8 3zyj_A Leucine-rich repeat-con 100.0 4.5E-29 1.5E-33 199.3 18.6 221 1-223 71-293 (440)
9 3zyi_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 200.6 17.4 221 1-223 82-304 (452)
10 3v47_A TOLL-like receptor 5B a 100.0 6.5E-29 2.2E-33 199.2 17.4 93 131-223 293-385 (455)
11 2z66_A Variable lymphocyte rec 100.0 5.3E-29 1.8E-33 189.9 15.0 222 2-224 36-263 (306)
12 1xku_A Decorin; proteoglycan, 100.0 4.6E-28 1.6E-32 186.6 20.0 216 1-223 59-277 (330)
13 2id5_A Lingo-1, leucine rich r 100.0 1.9E-28 6.5E-33 197.6 18.6 223 1-223 39-310 (477)
14 2id5_A Lingo-1, leucine rich r 100.0 1.6E-28 5.4E-33 198.1 17.7 177 9-187 25-202 (477)
15 4fcg_A Uncharacterized protein 100.0 2.1E-28 7.1E-33 188.2 17.3 208 16-228 79-296 (328)
16 2z80_A TOLL-like receptor 2, v 100.0 3E-29 1E-33 194.9 11.4 225 2-226 60-318 (353)
17 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-28 4.3E-33 186.0 14.4 225 1-226 39-265 (285)
18 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-27 3.9E-32 184.6 18.6 216 1-224 61-279 (332)
19 2z66_A Variable lymphocyte rec 100.0 4.9E-28 1.7E-32 184.6 16.1 217 9-228 21-242 (306)
20 3t6q_A CD180 antigen; protein- 100.0 2.6E-27 8.9E-32 196.1 20.2 225 1-226 261-517 (606)
21 3t6q_A CD180 antigen; protein- 100.0 8.5E-28 2.9E-32 199.0 17.3 226 1-227 40-343 (606)
22 3o6n_A APL1; leucine-rich repe 100.0 6.6E-27 2.3E-31 184.1 20.2 219 1-223 76-332 (390)
23 4eco_A Uncharacterized protein 100.0 1.4E-28 4.8E-33 204.5 10.9 190 34-227 198-420 (636)
24 3oja_B Anopheles plasmodium-re 100.0 1.1E-26 3.7E-31 192.1 20.6 218 1-224 82-339 (597)
25 2z80_A TOLL-like receptor 2, v 100.0 2.3E-27 7.7E-32 184.4 15.4 220 3-227 40-294 (353)
26 1xku_A Decorin; proteoglycan, 100.0 9.4E-27 3.2E-31 179.3 18.4 216 1-222 83-306 (330)
27 2z62_A TOLL-like receptor 4, v 100.0 2.5E-27 8.6E-32 178.1 14.8 214 10-226 22-241 (276)
28 3zyi_A Leucine-rich repeat-con 100.0 7.6E-27 2.6E-31 187.0 18.3 214 9-226 68-283 (452)
29 3zyj_A Leucine-rich repeat-con 99.9 1.2E-26 4E-31 185.3 18.3 214 9-226 57-272 (440)
30 2o6q_A Variable lymphocyte rec 99.9 8E-26 2.7E-30 169.4 21.3 204 18-224 16-220 (270)
31 4eco_A Uncharacterized protein 99.9 1.4E-27 4.8E-32 198.5 12.6 213 10-227 239-474 (636)
32 2ft3_A Biglycan; proteoglycan, 99.9 7E-27 2.4E-31 180.2 14.8 215 1-222 85-307 (332)
33 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-26 8E-31 187.2 18.6 221 1-226 28-391 (520)
34 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-26 1.1E-30 192.0 19.8 226 1-226 388-626 (680)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-26 4.3E-31 194.4 16.2 220 2-221 33-308 (680)
36 3o6n_A APL1; leucine-rich repe 99.9 3.7E-26 1.3E-30 179.8 17.8 217 1-223 100-353 (390)
37 1p9a_G Platelet glycoprotein I 99.9 1E-25 3.5E-30 170.4 18.7 205 13-223 5-209 (290)
38 4ecn_A Leucine-rich repeat pro 99.9 3.7E-27 1.3E-31 200.3 11.8 188 34-226 440-661 (876)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-25 3.5E-30 185.1 19.8 100 1-103 59-159 (562)
40 1wwl_A Monocyte differentiatio 99.9 2.3E-27 7.8E-32 181.3 8.9 203 16-224 93-311 (312)
41 3j0a_A TOLL-like receptor 5; m 99.9 3.9E-26 1.3E-30 195.4 16.8 93 11-103 66-161 (844)
42 3rfs_A Internalin B, repeat mo 99.9 4.3E-26 1.5E-30 171.0 15.1 204 14-228 37-241 (272)
43 3oja_B Anopheles plasmodium-re 99.9 3.4E-26 1.2E-30 189.1 15.4 221 2-226 59-317 (597)
44 3j0a_A TOLL-like receptor 5; m 99.9 8.9E-26 3E-30 193.2 17.7 226 1-228 273-545 (844)
45 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-26 7.7E-31 190.5 13.1 208 16-225 348-561 (606)
46 3vq2_A TLR4, TOLL-like recepto 99.9 4.3E-26 1.5E-30 188.8 13.8 219 2-227 315-538 (606)
47 2o6q_A Variable lymphocyte rec 99.9 2.1E-24 7E-29 161.7 21.2 194 2-198 24-218 (270)
48 4ecn_A Leucine-rich repeat pro 99.9 8.9E-26 3.1E-30 191.8 15.2 212 10-226 481-713 (876)
49 4fmz_A Internalin; leucine ric 99.9 6.3E-25 2.1E-29 170.2 18.6 212 1-226 117-328 (347)
50 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.9E-29 168.2 20.6 206 2-223 96-301 (347)
51 2z62_A TOLL-like receptor 4, v 99.9 2.4E-25 8.2E-30 167.3 15.3 198 1-199 35-238 (276)
52 2xwt_C Thyrotropin receptor; s 99.9 2.2E-25 7.5E-30 164.1 14.2 205 8-220 24-237 (239)
53 2z63_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 184.9 13.6 188 39-227 344-536 (570)
54 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-25 6.6E-30 182.9 13.9 135 1-135 33-170 (549)
55 2z63_A TOLL-like receptor 4, v 99.9 3E-25 1E-29 182.5 15.0 155 1-155 35-195 (570)
56 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-25 1.2E-29 180.4 14.4 220 1-226 52-416 (520)
57 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-24 1.8E-28 176.9 19.9 76 153-228 486-561 (635)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-25 7.1E-30 170.8 10.5 207 2-222 42-250 (317)
59 1h6u_A Internalin H; cell adhe 99.9 3.2E-24 1.1E-28 163.5 16.6 195 14-223 37-231 (308)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-25 3.8E-30 172.3 7.9 205 10-227 26-231 (317)
61 3oja_A Leucine-rich immune mol 99.9 5.1E-25 1.7E-29 177.7 12.0 208 1-222 41-250 (487)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.6E-24 2.3E-28 174.3 18.5 221 1-227 38-421 (562)
63 1o6v_A Internalin A; bacterial 99.9 1.6E-23 5.5E-28 168.4 20.2 195 14-223 195-389 (466)
64 3oja_A Leucine-rich immune mol 99.9 3.6E-25 1.2E-29 178.6 10.0 199 16-227 32-231 (487)
65 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.9E-28 156.8 17.6 204 18-227 19-223 (272)
66 1o6v_A Internalin A; bacterial 99.9 5.9E-23 2E-27 165.1 20.8 127 88-223 197-323 (466)
67 2z81_A CD282 antigen, TOLL-lik 99.9 4.9E-24 1.7E-28 174.6 13.9 193 3-199 14-210 (549)
68 4glp_A Monocyte differentiatio 99.9 2.3E-24 7.8E-29 164.6 10.7 202 17-224 90-309 (310)
69 3m19_A Variable lymphocyte rec 99.9 9.7E-23 3.3E-27 151.0 18.3 180 18-200 14-194 (251)
70 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-22 8.7E-27 160.7 22.1 200 1-224 49-248 (457)
71 1p9a_G Platelet glycoprotein I 99.9 6.1E-23 2.1E-27 155.1 17.2 185 37-227 5-189 (290)
72 1wwl_A Monocyte differentiatio 99.9 7.7E-24 2.6E-28 161.8 12.0 192 2-199 103-310 (312)
73 2ast_B S-phase kinase-associat 99.9 5.1E-25 1.7E-29 170.0 3.4 223 2-228 78-312 (336)
74 3m19_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 147.9 18.7 169 4-175 24-193 (251)
75 2xwt_C Thyrotropin receptor; s 99.9 5.8E-23 2E-27 151.1 13.5 190 1-196 38-237 (239)
76 4glp_A Monocyte differentiatio 99.9 5.6E-23 1.9E-27 156.9 12.2 195 1-200 98-309 (310)
77 2ca6_A RAN GTPase-activating p 99.9 3.7E-25 1.3E-29 173.8 0.1 224 2-225 40-319 (386)
78 3bz5_A Internalin-J, INLJ; leu 99.9 6.9E-22 2.4E-26 158.2 18.7 199 6-226 30-228 (457)
79 2ast_B S-phase kinase-associat 99.9 2.7E-24 9.3E-29 165.9 2.8 207 12-219 62-282 (336)
80 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.2E-26 149.3 16.8 184 1-199 48-231 (308)
81 3goz_A Leucine-rich repeat-con 99.9 4.6E-24 1.6E-28 166.3 1.0 220 1-220 5-264 (362)
82 3goz_A Leucine-rich repeat-con 99.9 2.7E-24 9.3E-29 167.6 -0.6 224 1-224 29-299 (362)
83 2o6s_A Variable lymphocyte rec 99.9 5.6E-21 1.9E-25 137.6 14.1 179 21-209 10-189 (208)
84 2o6s_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 138.0 13.6 161 17-184 27-188 (208)
85 1jl5_A Outer protein YOPM; leu 99.9 2E-20 6.9E-25 149.6 17.7 194 14-228 191-417 (454)
86 2ca6_A RAN GTPase-activating p 99.9 2.4E-23 8.3E-28 163.5 0.8 214 10-223 24-288 (386)
87 1h6t_A Internalin B; cell adhe 99.9 1E-20 3.5E-25 143.1 14.1 172 15-199 43-214 (291)
88 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-20 1.3E-24 152.7 18.6 81 137-226 221-301 (622)
89 1z7x_W Ribonuclease inhibitor; 99.9 3.9E-24 1.3E-28 171.7 -5.1 222 2-223 150-412 (461)
90 1jl5_A Outer protein YOPM; leu 99.9 1.6E-19 5.6E-24 144.4 21.3 206 1-228 138-378 (454)
91 1h6t_A Internalin B; cell adhe 99.8 1.4E-20 4.7E-25 142.3 12.8 186 23-223 29-214 (291)
92 3cvr_A Invasion plasmid antige 99.8 3.9E-20 1.3E-24 151.0 16.2 182 19-227 60-248 (571)
93 4g8a_A TOLL-like receptor 4; l 99.8 4E-20 1.4E-24 153.6 16.3 209 14-223 367-581 (635)
94 3g06_A SSPH2 (leucine-rich rep 99.8 2E-19 6.8E-24 148.4 19.9 197 2-227 48-278 (622)
95 1z7x_W Ribonuclease inhibitor; 99.8 2E-23 6.7E-28 167.6 -5.1 124 2-125 93-239 (461)
96 1m9s_A Internalin B; cell inva 99.8 4.1E-20 1.4E-24 152.2 14.2 174 14-200 39-212 (605)
97 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5E-24 140.2 15.8 216 4-226 19-240 (350)
98 4ezg_A Putative uncharacterize 99.8 5.7E-20 2E-24 131.2 11.7 154 63-223 41-195 (197)
99 1m9s_A Internalin B; cell inva 99.8 9E-20 3.1E-24 150.2 14.3 191 19-224 22-212 (605)
100 2xot_A Amphoterin-induced prot 99.8 1.7E-19 5.8E-24 140.4 14.0 151 21-174 21-176 (361)
101 4ay9_X Follicle-stimulating ho 99.8 3.2E-19 1.1E-23 138.3 15.2 214 1-219 37-256 (350)
102 3cvr_A Invasion plasmid antige 99.8 7.2E-19 2.5E-23 143.6 17.8 183 1-210 66-255 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 3.1E-19 1.1E-23 129.5 13.8 151 45-198 14-165 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-19 9.3E-24 129.8 12.7 152 44-198 13-166 (220)
105 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.2E-23 126.2 15.1 153 43-199 20-173 (229)
106 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.5E-23 125.7 14.5 151 21-174 14-165 (220)
107 3e6j_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 125.0 15.9 150 21-174 22-172 (229)
108 2xot_A Amphoterin-induced prot 99.8 6.5E-19 2.2E-23 137.1 11.8 175 45-222 21-202 (361)
109 1xeu_A Internalin C; cellular 99.8 3.4E-19 1.2E-23 132.7 9.0 171 16-200 17-187 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-18 1E-22 124.3 13.4 152 21-175 14-167 (220)
111 4ezg_A Putative uncharacterize 99.8 2.4E-18 8.1E-23 122.8 11.9 152 39-198 41-194 (197)
112 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.6E-23 130.1 10.0 161 2-176 27-187 (263)
113 3sb4_A Hypothetical leucine ri 99.8 4.4E-18 1.5E-22 130.8 10.6 197 17-216 48-328 (329)
114 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.6E-22 117.9 10.5 128 69-199 11-140 (192)
115 1dce_A Protein (RAB geranylger 99.7 2.3E-20 8E-25 152.7 -5.5 196 15-215 346-566 (567)
116 2ell_A Acidic leucine-rich nuc 99.7 3.1E-17 1.1E-21 114.0 11.0 135 90-227 24-164 (168)
117 2ell_A Acidic leucine-rich nuc 99.7 5E-17 1.7E-21 112.9 10.3 133 18-174 24-160 (168)
118 2o6r_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 111.5 12.1 129 68-199 9-138 (177)
119 1dce_A Protein (RAB geranylger 99.7 7.9E-20 2.7E-24 149.6 -6.3 182 39-226 346-550 (567)
120 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.5E-21 112.5 11.8 127 69-198 13-139 (193)
121 4b8c_D Glucose-repressible alc 99.7 1.4E-17 4.8E-22 140.2 5.8 142 83-227 217-359 (727)
122 4fdw_A Leucine rich hypothetic 99.7 1.5E-15 5.1E-20 119.5 15.4 201 13-222 153-358 (401)
123 3ogk_B Coronatine-insensitive 99.7 5.9E-18 2E-22 139.7 1.8 133 85-217 265-411 (592)
124 1w8a_A SLIT protein; signaling 99.7 4.8E-16 1.6E-20 110.3 11.0 128 45-175 11-140 (192)
125 2je0_A Acidic leucine-rich nuc 99.7 9.9E-17 3.4E-21 109.2 7.0 108 17-126 16-126 (149)
126 2je0_A Acidic leucine-rich nuc 99.7 1.6E-16 5.4E-21 108.2 7.6 125 92-218 19-149 (149)
127 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.5E-22 138.7 3.9 118 35-155 217-334 (727)
128 1a9n_A U2A', U2A'; complex (nu 99.7 6E-16 2.1E-20 108.3 9.5 130 89-221 18-152 (176)
129 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 105.5 13.6 126 45-174 13-139 (193)
130 4fdw_A Leucine rich hypothetic 99.6 5E-15 1.7E-19 116.4 13.8 207 6-220 168-381 (401)
131 3ogk_B Coronatine-insensitive 99.6 1.5E-17 5.1E-22 137.3 -1.3 38 16-53 110-149 (592)
132 1a9n_A U2A', U2A'; complex (nu 99.6 8.7E-16 3E-20 107.5 7.2 111 13-126 14-126 (176)
133 3sb4_A Hypothetical leucine ri 99.6 4.4E-15 1.5E-19 114.1 11.6 179 11-192 86-328 (329)
134 1ds9_A Outer arm dynein; leuci 99.6 3E-17 1E-21 117.2 -3.4 152 41-222 17-185 (198)
135 2o6r_A Variable lymphocyte rec 99.6 5.9E-14 2E-18 98.2 13.4 128 21-174 10-137 (177)
136 1ds9_A Outer arm dynein; leuci 99.6 3.4E-17 1.2E-21 116.8 -4.9 135 14-152 14-155 (198)
137 2p1m_B Transport inhibitor res 99.5 7.6E-17 2.6E-21 133.1 -4.3 206 15-222 286-519 (594)
138 2p1m_B Transport inhibitor res 99.5 1.7E-16 5.7E-21 131.1 -2.4 64 16-79 103-169 (594)
139 3g39_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 97.3 10.4 105 92-198 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 94.8 10.7 104 93-198 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.5 6.1E-13 2.1E-17 92.4 10.8 104 68-174 11-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 91.6 10.9 103 69-174 15-118 (174)
143 3un9_A NLR family member X1; l 99.4 7.3E-15 2.5E-19 114.5 -2.1 164 42-205 72-259 (372)
144 3un9_A NLR family member X1; l 99.4 7.9E-15 2.7E-19 114.3 -5.2 159 65-223 71-253 (372)
145 4fs7_A Uncharacterized protein 99.3 8.6E-11 2.9E-15 92.4 13.8 201 11-219 155-376 (394)
146 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.5E-16 95.3 8.9 103 94-198 12-116 (347)
147 4gt6_A Cell surface protein; l 99.3 1.4E-10 4.7E-15 91.2 14.6 106 111-220 263-368 (394)
148 2ifg_A High affinity nerve gro 99.3 3.3E-11 1.1E-15 93.1 10.0 97 5-104 20-117 (347)
149 2ra8_A Uncharacterized protein 99.2 3.6E-11 1.2E-15 93.1 6.3 199 18-220 107-341 (362)
150 2ra8_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 87.4 8.4 180 42-223 107-321 (362)
151 4gt6_A Cell surface protein; l 99.0 7E-09 2.4E-13 81.5 13.9 131 85-222 260-391 (394)
152 4fs7_A Uncharacterized protein 99.0 4.3E-09 1.5E-13 82.7 11.5 195 11-214 178-393 (394)
153 3e4g_A ATP synthase subunit S, 98.9 1.3E-09 4.3E-14 75.2 5.3 84 137-220 61-150 (176)
154 4h09_A Hypothetical leucine ri 98.8 1.8E-07 6.2E-12 73.0 15.6 107 108-217 235-341 (379)
155 4h09_A Hypothetical leucine ri 98.8 1.8E-07 6.2E-12 73.0 14.9 146 61-211 212-358 (379)
156 1io0_A Tropomodulin; LRR prote 98.7 1.3E-09 4.3E-14 76.6 -0.8 63 160-222 92-164 (185)
157 3e4g_A ATP synthase subunit S, 98.6 9E-09 3.1E-13 70.9 2.0 100 113-212 61-170 (176)
158 1io0_A Tropomodulin; LRR prote 98.6 7.8E-09 2.7E-13 72.5 0.7 114 37-150 31-164 (185)
159 3rw6_A Nuclear RNA export fact 98.3 6.6E-07 2.3E-11 66.1 4.3 80 135-215 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.9E-11 63.8 5.1 67 158-226 167-237 (267)
161 3rfe_A Platelet glycoprotein I 97.3 0.00052 1.8E-08 44.8 6.0 56 141-198 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 8.7E-05 3E-09 52.0 2.2 110 39-148 38-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.6E-09 51.6 2.1 114 108-221 36-169 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0035 1.2E-07 40.8 5.5 56 22-79 12-68 (130)
165 2lz0_A Uncharacterized protein 93.6 0.13 4.5E-06 31.6 4.6 49 2-51 4-52 (100)
166 2lz0_A Uncharacterized protein 91.1 0.65 2.2E-05 28.4 5.5 46 125-171 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-33 Score=214.17 Aligned_cols=225 Identities=33% Similarity=0.549 Sum_probs=204.8
Q ss_pred CCCCCCC--CCCccccCCCCccEEEccC-cccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccC
Q 045504 2 SNCNVSG--GIPEEITNLTNLTTIFFGG-NKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKL 78 (229)
Q Consensus 2 ~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 78 (229)
++|.+.+ .+|.++.++++|++|++++ +.+.+..|..+..+++|++|++++|.++...|..+..+++|++|++++|.+
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 5688888 8999999999999999995 888888999999999999999999999878888899999999999999999
Q ss_pred CCCCCccccCCCCCcEEEecCCcCC-Ccchhhcccc-cccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCC
Q 045504 79 SGSIPACFNNLASLRILSLGSNELT-SIPLTFWNLK-DILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156 (229)
Q Consensus 79 ~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 156 (229)
.+..|..+..+++|++|++.+|.+. .+|..+..++ .|+.+++++|.+....|..+..++ |++|++++|.+.+..+..
T Consensus 138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 9888999999999999999999998 7888888887 999999999999877788888777 999999999999888889
Q ss_pred cCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 157 IGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
+..+++|++|++++|.++...+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred HhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999974444 4777899999999999998888889999999999999999999999863
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-31 Score=227.21 Aligned_cols=226 Identities=36% Similarity=0.594 Sum_probs=162.0
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 45555566666666666666666666666656666666666666666666666656666666667777777777776666
Q ss_pred CCccccCCCCCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCc-----------------------------
Q 045504 82 IPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPS----------------------------- 131 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~----------------------------- 131 (229)
.|..+..+++|+.+++.+|.+. .+|..+..++.|+.+++++|.+.+..|.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 6666666777777777777665 5566677777777777777665433332
Q ss_pred -----------------------------------------CcCCcCcccEEEEecccccccCCCCcCCCCccceeeecC
Q 045504 132 -----------------------------------------EIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 170 (229)
Q Consensus 132 -----------------------------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (229)
.+..+++++.|++++|.+++..|..+..++.|+.|++++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 223345677788888888877788888888888888888
Q ss_pred ccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 171 NRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
|.++...|..++.+++|++|++++|.+++.+|..+..++.|++|++++|+++|.||.
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 888878888888888888888888888888888888888888888888888888885
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=2.7e-31 Score=225.17 Aligned_cols=228 Identities=37% Similarity=0.594 Sum_probs=206.9
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++.+|.+.+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 46788888899999999999999999999988899999999999999999999988888889999999999999999998
Q ss_pred CCCccccCCCCCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCC----
Q 045504 81 SIPACFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPT---- 155 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---- 155 (229)
..|..+..+++|+.+++.+|.+. .+|..+..+++|+.+++.+|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88999999999999999999988 7788899999999999999999878888999999999999999987754443
Q ss_pred ------------------------------------------------------------------CcCCCCccceeeec
Q 045504 156 ------------------------------------------------------------------EIGGLKNLEYLFLG 169 (229)
Q Consensus 156 ------------------------------------------------------------------~~~~~~~L~~L~l~ 169 (229)
.+..+++|++|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 23445788999999
Q ss_pred CccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 170 YNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
+|.+++..|..++.++.|++|++++|.+++.+|..++.++.|+.||+++|+++|.+|..
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999899999999999999999999999999999999999999999999999999964
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.4e-30 Score=196.29 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=171.3
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.
T Consensus 89 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 89 RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 456666 56777777888888888888887 77777888888888888888887 6677788888888888888776666
Q ss_pred CCccccC---------CCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccccc
Q 045504 82 IPACFNN---------LASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGV 152 (229)
Q Consensus 82 ~~~~~~~---------l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 152 (229)
.|..+.. +++|+.|++.+|.+..+|..+..+++|+.+++++|.+. ..+..+..+++|++|++++|.+.+.
T Consensus 166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence 6665543 78888888888888888877888888888888888877 4555677788888888888887777
Q ss_pred CCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 153 IPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
.|..+..+++|++|++++|.+....|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7888888888888888888777677777888888888888888887788888888888888888766543
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.3e-31 Score=202.01 Aligned_cols=216 Identities=32% Similarity=0.484 Sum_probs=197.2
Q ss_pred CCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC
Q 045504 4 CNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 83 (229)
|.+.+.+|..|+++++|++|++++|.+.+..|..+..+++|++|++++|.++...|..+..+++|++|++.+|.+.+..|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 78888999999999999999999999988889999999999999999999987888999999999999999999987888
Q ss_pred ccccCCC-CCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCC
Q 045504 84 ACFNNLA-SLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLK 161 (229)
Q Consensus 84 ~~~~~l~-~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 161 (229)
..+..++ +|+.+++.+|.+. ..|..+..+. |+.+++++|.+....+..+..+++|+.|++++|.+.+..+. +..++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 8898888 9999999999988 6677777776 99999999999877888899999999999999999866555 77889
Q ss_pred ccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 162 NLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|+..
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 9999999999998888999999999999999999998777765 78999999999999843
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=7e-29 Score=187.46 Aligned_cols=209 Identities=28% Similarity=0.298 Sum_probs=188.0
Q ss_pred CCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCcc-CCCCCCccccCCCCCcEE
Q 045504 17 LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNK-LSGSIPACFNNLASLRIL 95 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l 95 (229)
.++++.|+++++.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4799999999999987777789999999999999999987778889999999999999997 776667889999999999
Q ss_pred EecCCcCCCc-chhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 96 SLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 96 ~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
++.+|.+..+ +..+..+++|+.+++.+|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999999877 456788999999999999998666677889999999999999999887778999999999999999998
Q ss_pred CCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCC
Q 045504 175 GSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEI 225 (229)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 225 (229)
+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 777888999999999999999999877778999999999999999987643
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.3e-29 Score=200.85 Aligned_cols=117 Identities=25% Similarity=0.293 Sum_probs=67.6
Q ss_pred cccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcE
Q 045504 110 WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKS 189 (229)
Q Consensus 110 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 189 (229)
..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 34445555555555554444445555555666666655555555555555666666666666655444555566666666
Q ss_pred EecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 190 LNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 190 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6666666665444455566666666666666666555
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.5e-29 Score=199.29 Aligned_cols=221 Identities=27% Similarity=0.309 Sum_probs=189.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+.+|.++++|+.|++++|.+....+..|..+++|++|++++|+++...+..+..+++|++|++++|.+..
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 46788888888889999999999999999887777888899999999999999886666678889999999999999886
Q ss_pred CCCccccCCCCCcEEEecC-CcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 81 SIPACFNNLASLRILSLGS-NELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
..+..+..+++|+.|++.+ +.+..++. .+..+++|+.|++++|.++. .| .+..+++|++|++++|.+.+..+..|.
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhc
Confidence 6667788899999999987 44555554 57788999999999998873 34 467888999999999999988889999
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999987778888899999999999999987777778889999999999998764
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.5e-29 Score=200.58 Aligned_cols=221 Identities=27% Similarity=0.302 Sum_probs=179.1
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|+++...+..+..+++|++|++++|.+..
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 46778887778888888888888888888887777788888888888888888876666667788888888888888876
Q ss_pred CCCccccCCCCCcEEEecC-CcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 81 SIPACFNNLASLRILSLGS-NELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
..+..+..+++|+.|++.+ +.+..++. .+..+++|+.+++++|.+... + .+..+++|++|++++|.+.+..+..+.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCccccc
Confidence 6666778888888888887 45555554 567788888999988888743 3 467788899999999988888888888
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88999999999998887777788888899999999998887766777888899999999988764
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.5e-29 Score=199.16 Aligned_cols=93 Identities=26% Similarity=0.269 Sum_probs=59.6
Q ss_pred cCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCC
Q 045504 131 SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSY 210 (229)
Q Consensus 131 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 210 (229)
..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 33445556666666666666555556666666666666666665455556666667777777777666555666666777
Q ss_pred CCeEEecCccCcC
Q 045504 211 LEDLNLSFNKLEG 223 (229)
Q Consensus 211 L~~L~l~~n~~~~ 223 (229)
|++|++++|++++
T Consensus 373 L~~L~L~~N~l~~ 385 (455)
T 3v47_A 373 LKELALDTNQLKS 385 (455)
T ss_dssp CCEEECCSSCCSC
T ss_pred ccEEECCCCcccc
Confidence 7777777776664
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.3e-29 Score=189.94 Aligned_cols=222 Identities=21% Similarity=0.210 Sum_probs=141.2
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCC--CcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGS--IPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
++|.+....+..|.++++|+.|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE
T ss_pred CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc
Confidence 45555544444466666666666666665522 1344455666666666666665 34445666677777777777666
Q ss_pred CCCC-ccccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecCCccCC-CCCcCcCCcCcccEEEEecccccccCCCC
Q 045504 80 GSIP-ACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTG-PLPSEIGNLKVLVIIDFSMNNFSGVIPTE 156 (229)
Q Consensus 80 ~~~~-~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 156 (229)
...+ ..+..+++|+.+++++|.+... +..+..+++|+.+++.+|.+.+ ..|..+..+++|++|++++|.+.+..+..
T Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 4433 4566667777777777666533 3345566677777777776654 35566666677777777777776666666
Q ss_pred cCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccC-CCCeEEecCccCcCC
Q 045504 157 IGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLS-YLEDLNLSFNKLEGE 224 (229)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~ 224 (229)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|++.+.
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77777777777777776655555566667777777777777666666666663 677777777776643
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-28 Score=186.62 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=152.0
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..+.+|.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .++..+ .++|++|++.+|.+..
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~--~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK 135 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCB
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh--cccccEEECCCCcccc
Confidence 4567777777777888888888888888887666778888888888888888876 344333 2567777777777765
Q ss_pred CCCccccCCCCCcEEEecCCcCC---CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCc
Q 045504 81 SIPACFNNLASLRILSLGSNELT---SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI 157 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 157 (229)
..+..+..+++|+.+++.+|.+. ..+..+..+++|+.+++.++.++. .|..+. ++|++|++++|.+.+..+..+
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 55556677777777777777765 234456667777777777777663 333322 567777777777776666667
Q ss_pred CCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 158 GGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++..+..+++|++|++++|++++
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 77777777777777776555556666777777777777776 455556677777777777777764
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=197.59 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=122.5
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+..|.++++|+.|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 118 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence 35666666666677777777777777777665556666677777777777776664444455666666666666666654
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcc-hhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCC-----
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIP----- 154 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----- 154 (229)
..+..+..+++|+.|++.+|.+..++ ..+..+++|+.+++.+|.++...+..+..+++|+.|++++|.+.+..+
T Consensus 119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 198 (477)
T 2id5_A 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198 (477)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS
T ss_pred CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhccc
Confidence 44555555555666665555554332 234444445555544444432222223333333333333333332222
Q ss_pred -------------------------------------------CCcCCCCccceeeecCccccCCCchhccCCCcCcEEe
Q 045504 155 -------------------------------------------TEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLN 191 (229)
Q Consensus 155 -------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 191 (229)
..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 2233444555555555554433344455555555555
Q ss_pred cCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 192 LSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 192 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
+++|.+.+..+..+..+++|++|++++|.+++
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 55555555555555666666666666666653
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=198.06 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=147.7
Q ss_pred CCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccC
Q 045504 9 GIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNN 88 (229)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 88 (229)
.+|..+. ++++.|+++++.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++.+|.+....+..+..
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 4555443 68999999999999777889999999999999999998777888999999999999999998666677899
Q ss_pred CCCCcEEEecCCcCCCc-chhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceee
Q 045504 89 LASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167 (229)
Q Consensus 89 l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 167 (229)
+++|+.|++++|.+..+ +..+..+++|+.+++.+|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 99999999999999866 45788899999999999999877778899999999999999999877666677778888888
Q ss_pred ecCccccCCCchhccCCCcC
Q 045504 168 LGYNRLQGSIPNSFGDLISL 187 (229)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~L 187 (229)
+++|.+....+..+..+++|
T Consensus 183 l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp EESCCCCEECTTCSCSCTTC
T ss_pred CCCCcCcEeChhhcccCccc
Confidence 87776654333334333333
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.1e-28 Score=188.24 Aligned_cols=208 Identities=25% Similarity=0.298 Sum_probs=187.0
Q ss_pred CCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEE
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRIL 95 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 95 (229)
..++++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3488999999999998 77888888999999999999998 78888999999999999999998 678889999999999
Q ss_pred EecCCcC-CCcchhhc---------ccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccce
Q 045504 96 SLGSNEL-TSIPLTFW---------NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEY 165 (229)
Q Consensus 96 ~l~~~~~-~~~~~~~~---------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 165 (229)
++++|.. ..+|..+. .+++|+.+++++|.++ ..|..+..+++|++|++++|.+.+ .|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 9998654 46666554 4899999999999988 778888999999999999999985 4556889999999
Q ss_pred eeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 166 LFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
|++++|.+....|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|..
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 999999888788999999999999999999998889988999999999999999999999964
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=194.94 Aligned_cols=225 Identities=20% Similarity=0.222 Sum_probs=119.2
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|+++...+..+..+++|++|++++|.+...
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 139 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence 34455544444555555555555555555544444555555555555555555533333345555555555555555532
Q ss_pred CC-ccccCCCCCcEEEecCC-cCCCcc-hhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 82 IP-ACFNNLASLRILSLGSN-ELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 82 ~~-~~~~~l~~L~~l~l~~~-~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
.. ..+..+++|+.+++.+| .+..++ ..+..++.|+.+++.+|.+....+..+..+++|++|++++|.+.......+.
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 22 24455555555555555 233332 2444555555555555555544445555555555555555554432222233
Q ss_pred CCCccceeeecCccccCC-------------------------------CchhccCCCcCcEEecCCccccCccchHhhc
Q 045504 159 GLKNLEYLFLGYNRLQGS-------------------------------IPNSFGDLISLKSLNLSNNNLSGAIPASLEK 207 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~-------------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 207 (229)
.+++|++|++++|.++.. +|..+..+++|++|++++|.++......+..
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~ 299 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence 345566666666555432 1233455667777777777776433333466
Q ss_pred cCCCCeEEecCccCcCCCC
Q 045504 208 LSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 208 ~~~L~~L~l~~n~~~~~~p 226 (229)
+++|++|++++|++.+..|
T Consensus 300 l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCCCCEEEeeCCCccCcCC
Confidence 7777777777777766543
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-28 Score=186.05 Aligned_cols=225 Identities=24% Similarity=0.269 Sum_probs=189.4
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccc-cCCCCCccccCCCCccEEEccCccCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK-LEGSIPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
+++|.+++..+..|..+++|++|+++++.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++.+|.+.
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 46788888888889999999999999999987778899999999999999997 77666888899999999999999999
Q ss_pred CCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 80 GSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 80 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
...+..+..+++|+.+++.+|.+..++. .+..+++|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+.
T Consensus 119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 7778889999999999999999998776 478899999999999999866666788899999999999999988899999
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.+++|++|++++|.+++..+..+..+++|++|++++|.+...-+. ..-...++.+..+.+.+.+..|
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEES
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCc
Confidence 999999999999999876667799999999999999988632111 0111223334455555555554
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-27 Score=184.59 Aligned_cols=216 Identities=26% Similarity=0.367 Sum_probs=145.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+.+|.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .++..+. ++|++|++.+|.+..
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK 137 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc
Confidence 3556666666667777777777777777776666667777777777777777766 3343332 667777777777765
Q ss_pred CCCccccCCCCCcEEEecCCcCCC---cchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCc
Q 045504 81 SIPACFNNLASLRILSLGSNELTS---IPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI 157 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 157 (229)
..+..+..+++|+.+++.+|.+.. .+..+..+ +|+.++++++.++. .|..+. ++|++|++++|.+.+..+..+
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 555566777777777777776652 23333344 56666666666553 332222 567777777777776666777
Q ss_pred CCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 158 GGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
..+++|++|++++|.++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++.
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 77778888888888777655666777778888888888776 5555677778888888888777643
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.9e-28 Score=184.59 Aligned_cols=217 Identities=24% Similarity=0.311 Sum_probs=188.0
Q ss_pred CCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCC--CCccccCCCCccEEEccCccCCCCCCccc
Q 045504 9 GIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGS--IPDNICRLTELYELELGGNKLSGSIPACF 86 (229)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 86 (229)
.+|..+ .+++++|+++++.+....+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+. ..+..+
T Consensus 21 ~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~ 97 (306)
T 2z66_A 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97 (306)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE
T ss_pred cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc
Confidence 345433 37899999999999866666788999999999999998632 2455667899999999999988 456668
Q ss_pred cCCCCCcEEEecCCcCCCcch--hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccc-cCCCCcCCCCcc
Q 045504 87 NNLASLRILSLGSNELTSIPL--TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSG-VIPTEIGGLKNL 163 (229)
Q Consensus 87 ~~l~~L~~l~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L 163 (229)
..+++|+.|++.+|.+..++. .+..+++|+.++++++.+....+..+..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 899999999999999987764 68889999999999999887777888899999999999999986 678889999999
Q ss_pred ceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 164 EYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|..
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 99999999998777888999999999999999998777777889999999999999999877643
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.6e-27 Score=196.13 Aligned_cols=225 Identities=23% Similarity=0.261 Sum_probs=134.6
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+..|+.+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++.+|.+..
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 3567777777777888888888888888877 667777788888888888888775556667777777777777776653
Q ss_pred CCC-ccccCCCCCcEEEecCCcCCCc---chhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc------
Q 045504 81 SIP-ACFNNLASLRILSLGSNELTSI---PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS------ 150 (229)
Q Consensus 81 ~~~-~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------ 150 (229)
..+ ..+..+++|+.+++++|.+... +..+..+++|+.+++++|.+....+..+..+++|++|++++|.+.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 333 3356666666666666666543 334555555666665555554344444444555555555555444
Q ss_pred -------------------ccCCCCcCCCCccceeeecCccccCC---CchhccCCCcCcEEecCCccccCccchHhhcc
Q 045504 151 -------------------GVIPTEIGGLKNLEYLFLGYNRLQGS---IPNSFGDLISLKSLNLSNNNLSGAIPASLEKL 208 (229)
Q Consensus 151 -------------------~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 208 (229)
+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 44444444445555555555544321 11234444555555555555554444555555
Q ss_pred CCCCeEEecCccCcCCCC
Q 045504 209 SYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 209 ~~L~~L~l~~n~~~~~~p 226 (229)
++|++|++++|++++..|
T Consensus 500 ~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp TTCCEEECCSSCCCGGGG
T ss_pred cCCCEEECCCCccCcCCh
Confidence 555555555555554443
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8.5e-28 Score=199.03 Aligned_cols=226 Identities=20% Similarity=0.158 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..|.+|+++++|++|++++|.+.+..|..|..+++|++|++++|++....+..+..+++|++|++.+|.+..
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 45677777777777777778888887777776667777777777777777777765566667777777777777777665
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcc-hhhcccccccEEEecCCccCCCCCcCcCCcC----------------------
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGNLK---------------------- 137 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~---------------------- 137 (229)
..+..+..+++|++|++.+|.+..++ ..+..+++|+.+++.+|.++...+..+..++
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 44555666666666666666655432 2222345555555555444322222222222
Q ss_pred -------------------------------------------------------cccEEEEecccccccCCCCcCCCCc
Q 045504 138 -------------------------------------------------------VLVIIDFSMNNFSGVIPTEIGGLKN 162 (229)
Q Consensus 138 -------------------------------------------------------~l~~l~l~~~~~~~~~~~~~~~~~~ 162 (229)
+++.+++++|.+.+..+..+..+++
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 4555666666666566666778888
Q ss_pred cceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 163 LEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.
T Consensus 280 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 999999999887 7777788888999999999988877777788888889999988888777664
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=6.6e-27 Score=184.06 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=158.2
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+.+|..+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+..+++|++|++++|.+..
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 45677777667777888888888888888776667777778888888888888774444445777888888888887776
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchh-hcc-------------------------------------cccccEEEecC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLT-FWN-------------------------------------LKDILQLNCSS 122 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~-------------------------------------~~~L~~l~l~~ 122 (229)
..+..+..+++|+.|++.+|.+..++.. +.. .++|+.+++.+
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 6666677778888888877776643211 000 11344444444
Q ss_pred CccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccc
Q 045504 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIP 202 (229)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 202 (229)
+.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+. ..+
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecC
Confidence 444422 34566788888888888888777888888888999999888887 45555667788999999988887 455
Q ss_pred hHhhccCCCCeEEecCccCcC
Q 045504 203 ASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 203 ~~l~~~~~L~~L~l~~n~~~~ 223 (229)
..+..+++|++|++++|++.+
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCC
T ss_pred ccccccCcCCEEECCCCccce
Confidence 567788889999998888764
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.4e-28 Score=204.49 Aligned_cols=190 Identities=19% Similarity=0.379 Sum_probs=126.8
Q ss_pred CcccccCCCCccEEeccccccCCC-----------------CCcccc--CCCCccEEEccCccCCCCCCccccCCCCCcE
Q 045504 34 IPITLGKLQKLQGLGLEDNKLEGS-----------------IPDNIC--RLTELYELELGGNKLSGSIPACFNNLASLRI 94 (229)
Q Consensus 34 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 94 (229)
+|..+..+++|++|++++|.+++. +|..+. .+++|++|++++|.+.+..|..+.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 455666777777777777777642 666666 7777777777777776667777777777777
Q ss_pred EEecCCc-CCC--cchhhccc------ccccEEEecCCccCCCCCc--CcCCcCcccEEEEecccccccCCCCcCCCCcc
Q 045504 95 LSLGSNE-LTS--IPLTFWNL------KDILQLNCSSNFLTGPLPS--EIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNL 163 (229)
Q Consensus 95 l~l~~~~-~~~--~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 163 (229)
|++++|. ++. +|..+..+ ++|+.+++.+|.++ ..|. .+..+++|++|++++|.+.+..| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 7777776 653 66655554 67777777777776 5565 66677777777777777765555 66666677
Q ss_pred ceeeecCccccCCCchhccCCCc-CcEEecCCccccCccchHhhcc--CCCCeEEecCccCcCCCCC
Q 045504 164 EYLFLGYNRLQGSIPNSFGDLIS-LKSLNLSNNNLSGAIPASLEKL--SYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~n~~~~~~p~ 227 (229)
++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+... ++|++|++++|.+.+.+|.
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 77777777666 55555666666 777777766666 444444333 2566666666666665553
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=192.05 Aligned_cols=218 Identities=23% Similarity=0.263 Sum_probs=162.2
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+.+|+.+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 45677777777778888888888888888877777777788888888888888775555556778888888888888776
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccc----------------------------------------cccEEEe
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLK----------------------------------------DILQLNC 120 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~----------------------------------------~L~~l~l 120 (229)
..+..+..+++|+.|++.+|.+..++. ..++ .|+.+++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L 239 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 239 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEEC
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEEC
Confidence 666677778888888888777664431 1111 2444444
Q ss_pred cCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCc
Q 045504 121 SSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 200 (229)
.+|.+++ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .++..+..+++|++|++++|.+. .
T Consensus 240 ~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~ 315 (597)
T 3oja_B 240 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 315 (597)
T ss_dssp CSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-C
T ss_pred CCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-c
Confidence 4444432 245667788888999998888888888888889999999998887 45666667889999999999887 5
Q ss_pred cchHhhccCCCCeEEecCccCcCC
Q 045504 201 IPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 201 ~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
++..+..+++|+.|++++|.+++.
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cCcccccCCCCCEEECCCCCCCCc
Confidence 566678888999999999888743
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=184.37 Aligned_cols=220 Identities=21% Similarity=0.277 Sum_probs=185.9
Q ss_pred CCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCC
Q 045504 3 NCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSI 82 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 82 (229)
+++++ .+|..+. ++|+.|+++++.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....
T Consensus 40 ~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 34444 4555444 68999999999998766668999999999999999998777778999999999999999998655
Q ss_pred CccccCCCCCcEEEecCCcCCCcch--hhcccccccEEEecCCc-cCCCCCcCcCCcCcccEEEEecccccccCCCCcCC
Q 045504 83 PACFNNLASLRILSLGSNELTSIPL--TFWNLKDILQLNCSSNF-LTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGG 159 (229)
Q Consensus 83 ~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 159 (229)
+..+..+++|+++++++|.+..++. .+..+++|+.+++.+|. +....+..+..+++|++|++++|.+.+..+..+..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 5568899999999999999998887 67889999999999984 55455678889999999999999999888999999
Q ss_pred CCccceeeecCccccCCCch-hccCCCcCcEEecCCccccCc-------------------------------cchHhhc
Q 045504 160 LKNLEYLFLGYNRLQGSIPN-SFGDLISLKSLNLSNNNLSGA-------------------------------IPASLEK 207 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-------------------------------~~~~l~~ 207 (229)
+++|++|++++|.++ ..+. .+..+++|++|++++|.+.+. ++..+..
T Consensus 197 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp CSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 999999999999987 4444 345678999999999988753 3445778
Q ss_pred cCCCCeEEecCccCcCCCCC
Q 045504 208 LSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 208 ~~~L~~L~l~~n~~~~~~p~ 227 (229)
+++|++|++++|.++ .+|.
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCT
T ss_pred ccCCCEEECCCCCCC-ccCH
Confidence 999999999999998 6775
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=9.4e-27 Score=179.30 Aligned_cols=216 Identities=21% Similarity=0.319 Sum_probs=187.5
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..|..|+.+++|++|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 4688999888999999999999999999988 4454433 799999999999987777778899999999999998863
Q ss_pred --CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 81 --SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 81 --~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
..+..+..+++|+.+++.+|.+..+|..+. +.|+.+++.+|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 556778899999999999999998887654 7899999999998877778889999999999999999988888899
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhc------cCCCCeEEecCccCc
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEK------LSYLEDLNLSFNKLE 222 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~n~~~ 222 (229)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .+.++.+++++|++.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999999999999998 77888888999999999999998766555532 478899999999875
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.5e-27 Score=178.14 Aligned_cols=214 Identities=25% Similarity=0.302 Sum_probs=183.0
Q ss_pred CCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCC
Q 045504 10 IPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNL 89 (229)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 89 (229)
+|..+. ++|+.|+++++.+.+..+..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 455443 679999999999987777788999999999999999986667788899999999999999987777889999
Q ss_pred CCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCC-CCcCcCCcCcccEEEEecccccccCCCCcCCCCccc---
Q 045504 90 ASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGP-LPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLE--- 164 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~--- 164 (229)
++|+.+++.+|.+..++. .+..+++|+.+++++|.+... .|..+..+++|++|++++|.+.+..+..+..+.+++
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 999999999999987765 678899999999999998754 578889999999999999999887777777766676
Q ss_pred -eeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 165 -YLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 165 -~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
++++++|.++...+..+. ..+|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 899999999854444444 3589999999999987777777899999999999999997765
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.6e-27 Score=187.02 Aligned_cols=214 Identities=27% Similarity=0.280 Sum_probs=187.2
Q ss_pred CCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccC
Q 045504 9 GIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNN 88 (229)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 88 (229)
.+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 3454443 78999999999999888889999999999999999998777788999999999999999999777777899
Q ss_pred CCCCcEEEecCCcCCCcch-hhcccccccEEEecCCc-cCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCcccee
Q 045504 89 LASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNF-LTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYL 166 (229)
Q Consensus 89 l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 166 (229)
+++|+.|++++|.+..++. .+..+++|+.+++.++. +....+..+..+++|++|++++|.+.+. | .+..+++|++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEE
Confidence 9999999999999998776 67889999999999854 4333445788899999999999999855 3 47789999999
Q ss_pred eecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 167 FLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 999999987778899999999999999999998888889999999999999999985444
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=185.35 Aligned_cols=214 Identities=24% Similarity=0.278 Sum_probs=187.1
Q ss_pred CCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccC
Q 045504 9 GIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNN 88 (229)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 88 (229)
.+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 4555444 78999999999999777889999999999999999998777788999999999999999999776778999
Q ss_pred CCCCcEEEecCCcCCCcch-hhcccccccEEEecCCcc-CCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCcccee
Q 045504 89 LASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFL-TGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYL 166 (229)
Q Consensus 89 l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 166 (229)
+++|+.|++.+|.+..++. .+..+++|+.+++.++.. ....+..+..+++|++|++++|.+... | .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEE
Confidence 9999999999999998776 678899999999998543 333445788899999999999999854 3 47889999999
Q ss_pred eecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 167 FLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 999999987778899999999999999999998888889999999999999999985444
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=8e-26 Score=169.40 Aligned_cols=204 Identities=27% Similarity=0.348 Sum_probs=149.4
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEe
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSL 97 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 97 (229)
.+.+.++++++.++ .+|..+. +++++|++++|++....+..+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 34677787777776 4444332 56788888888777655566777788888888888777555556677788888888
Q ss_pred cCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCC
Q 045504 98 GSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 176 (229)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (229)
.+|.+..++. .+..+++|+.+++.++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 8887776665 446677888888888877766666677778888888888887766666677778888888888877755
Q ss_pred CchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 177 IPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 555677778888888888877766556677778888888888877643
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.4e-27 Score=198.51 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=143.9
Q ss_pred CCcccc--CCCCccEEEccCcccCCCCcccccCCCCccEEeccccc-cCC-CCCccccCC------CCccEEEccCccCC
Q 045504 10 IPEEIT--NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK-LEG-SIPDNICRL------TELYELELGGNKLS 79 (229)
Q Consensus 10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~ 79 (229)
+|..++ ++++|++|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+..+ ++|++|++.+|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 777777 88888888888888777788888888888888888887 664 456655554 77888888887777
Q ss_pred CCCCc--cccCCCCCcEEEecCCcCC-CcchhhcccccccEEEecCCccCCCCCcCcCCcCc-ccEEEEecccccccCCC
Q 045504 80 GSIPA--CFNNLASLRILSLGSNELT-SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKV-LVIIDFSMNNFSGVIPT 155 (229)
Q Consensus 80 ~~~~~--~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~ 155 (229)
..|. .+..+++|+.|++.+|.+. .+| .+..+++|+.+++++|.+. ..|..+..+++ |++|++++|.+. ..|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 5666 6777777777777777777 666 6666677777777777666 55555666666 777777777666 4454
Q ss_pred CcCCCC--ccceeeecCccccCCCchhcc-------CCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 156 EIGGLK--NLEYLFLGYNRLQGSIPNSFG-------DLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 156 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.+.... +|++|++++|.++...|..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 444433 566666666666655555555 4556666666666666433334444666666666666665 555
Q ss_pred C
Q 045504 227 T 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 474 ~ 474 (636)
T 4eco_A 474 K 474 (636)
T ss_dssp S
T ss_pred H
Confidence 3
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7e-27 Score=180.17 Aligned_cols=215 Identities=22% Similarity=0.312 Sum_probs=176.8
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..|.+|+++++|++|++++|.+. .+|..+. ++|++|++++|++....+..+..+++|++|++.+|.+..
T Consensus 85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 4678999888999999999999999999988 4555443 799999999999987666778999999999999999863
Q ss_pred --CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC
Q 045504 81 --SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 81 --~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
..+..+..+ +|+.+++.+|.+..+|..+. +.|+.+++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 556667666 89999999998888776554 6888888888888866667788888899999999888877777788
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhc------cCCCCeEEecCccCc
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEK------LSYLEDLNLSFNKLE 222 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~n~~~ 222 (229)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .+.|+.+++++|++.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8888999999988887 66777888888999999988887665554443 366888888888776
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=187.24 Aligned_cols=221 Identities=19% Similarity=0.219 Sum_probs=140.5
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..|.+|.++++|++|++++|.+.+..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+..
T Consensus 28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSS
T ss_pred CCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcccc
Confidence 4567777666667777777777777777777666677777777777777777776 34443 67777777777777764
Q ss_pred -CCCccccCCCCCcEEEecCCcCCCcchhhcccccc--cEEEecCCcc--CCCCCcCcCCc-------------------
Q 045504 81 -SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDI--LQLNCSSNFL--TGPLPSEIGNL------------------- 136 (229)
Q Consensus 81 -~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~~~~~~~~~~~------------------- 136 (229)
..|..+..+++|+.|++++|.+.. ..+..++.| +.+++.+|.+ ....|..+..+
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred ccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 245667777777777777766543 223333333 4444444443 21222221110
Q ss_pred ----------------------------------------------------------------CcccEEEEeccccccc
Q 045504 137 ----------------------------------------------------------------KVLVIIDFSMNNFSGV 152 (229)
Q Consensus 137 ----------------------------------------------------------------~~l~~l~l~~~~~~~~ 152 (229)
++|++|++++|.+.+.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 1344445554444433
Q ss_pred CCCCc-----------------------------------------------------CCCCccceeeecCccccCCCch
Q 045504 153 IPTEI-----------------------------------------------------GGLKNLEYLFLGYNRLQGSIPN 179 (229)
Q Consensus 153 ~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~ 179 (229)
.|..+ ..+++|++|++++|.+++..+.
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT
T ss_pred cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh
Confidence 33222 4566777888888877766677
Q ss_pred hccCCCcCcEEecCCccccC--ccchHhhccCCCCeEEecCccCcCCCC
Q 045504 180 SFGDLISLKSLNLSNNNLSG--AIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 180 ~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.++.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.+|
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 77778888888888888775 344567778888888888888776565
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.2e-26 Score=191.96 Aligned_cols=226 Identities=23% Similarity=0.278 Sum_probs=192.6
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCc-ccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIP-ITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
+++|.+.+..|.+|..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++....+..+..+++|+.|++.+|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 35678888888889999999999999999875444 67888999999999999987777778888999999999998876
Q ss_pred --CCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCC--------cCcCCcCcccEEEEeccc
Q 045504 80 --GSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLP--------SEIGNLKVLVIIDFSMNN 148 (229)
Q Consensus 80 --~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~--------~~~~~~~~l~~l~l~~~~ 148 (229)
+..|..+..+++|+.+++++|.+..++. .+..++.|+.+++++|.++...+ ..+..+++|++|++++|.
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 4567788899999999999999998765 57889999999999998864321 236788999999999999
Q ss_pred ccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhh-ccCCCCeEEecCccCcCCCC
Q 045504 149 FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLE-KLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 149 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~p 226 (229)
+..+.+..|.++++|+.|++++|.++...+..+..+++|++|++++|.++...+..+. .+++|+.+++++|++.+.-+
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9977777899999999999999999866666788899999999999999977777777 78999999999999886543
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.3e-26 Score=194.39 Aligned_cols=220 Identities=26% Similarity=0.219 Sum_probs=117.0
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+.+..+.+|.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 33 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 45666665555666666666666666666655566666666666666666666544334455666666666666666544
Q ss_pred CCccccCCCCCcEEEecCCcCCCcc-hhhcccccccEEEecCCccCCCCCcCcC--CcCcccEEEEecccccc-------
Q 045504 82 IPACFNNLASLRILSLGSNELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIG--NLKVLVIIDFSMNNFSG------- 151 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~------- 151 (229)
.+..+..+++|++|++.+|.+...+ ..+..+++|+.+++.+|.++...+..+. .+++|++|++++|.+.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 4455556666666666665554332 2344455555555555544432222211 22344444444444443
Q ss_pred --------------------------------------------cCCCCcCCCCc--cceeeecCccccCCCchhccCCC
Q 045504 152 --------------------------------------------VIPTEIGGLKN--LEYLFLGYNRLQGSIPNSFGDLI 185 (229)
Q Consensus 152 --------------------------------------------~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~ 185 (229)
..+.++.+++. |++|++++|.++...+..++.++
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence 33333333322 55555555555434444455555
Q ss_pred cCcEEecCCccccCccchHhhccCCCCeEEecCccC
Q 045504 186 SLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKL 221 (229)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 221 (229)
+|++|++++|.+.+..+..+..+++|+.|++++|..
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 555555555555544444555555555555555443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.7e-26 Score=179.79 Aligned_cols=217 Identities=23% Similarity=0.208 Sum_probs=178.0
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..|..|+++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 100 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 46788998888899999999999999999986655667889999999999999987777778899999999999998874
Q ss_pred CCCccccC-------------------------------------CCCCcEEEecCCcCCCcchhhcccccccEEEecCC
Q 045504 81 SIPACFNN-------------------------------------LASLRILSLGSNELTSIPLTFWNLKDILQLNCSSN 123 (229)
Q Consensus 81 ~~~~~~~~-------------------------------------l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 123 (229)
.....+.. .++|+.+++.+|.+... ..+..++.|+.+++++|
T Consensus 180 ~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCC
Confidence 32222211 12455555666655544 35778899999999999
Q ss_pred ccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccch
Q 045504 124 FLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPA 203 (229)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 203 (229)
.+.+..+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.+..
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred cCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--
Confidence 99877788899999999999999999854 555678899999999999998 66777778899999999999998553
Q ss_pred HhhccCCCCeEEecCccCcC
Q 045504 204 SLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 204 ~l~~~~~L~~L~l~~n~~~~ 223 (229)
+..+++|++|++++|++.+
T Consensus 335 -~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEH
T ss_pred -chhhccCCEEEcCCCCccc
Confidence 6688999999999998763
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1e-25 Score=170.37 Aligned_cols=205 Identities=24% Similarity=0.197 Sum_probs=176.1
Q ss_pred cccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCC
Q 045504 13 EITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASL 92 (229)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 92 (229)
.++++++++.+++.++.+. .+|..+. +.++.|++++|.++...+..+..+++|++|++.+|.+....+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4778899999999999887 4554443 689999999999987777788899999999999999874433 2678999
Q ss_pred cEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcc
Q 045504 93 RILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 172 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (229)
+.|++++|.+..+|..+..++.|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999999999999888899999999999999987666788899999999999999998878888899999999999999
Q ss_pred ccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 173 LQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++...+..+..+++|++|++++|.+. .++..+...+.|+.+++++|++.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 98655667788999999999999998 566667778899999999998864
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.7e-27 Score=200.26 Aligned_cols=188 Identities=22% Similarity=0.358 Sum_probs=129.8
Q ss_pred CcccccCCCCccEEeccccccCC-----------------CCCcccc--CCCCccEEEccCccCCCCCCccccCCCCCcE
Q 045504 34 IPITLGKLQKLQGLGLEDNKLEG-----------------SIPDNIC--RLTELYELELGGNKLSGSIPACFNNLASLRI 94 (229)
Q Consensus 34 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 94 (229)
+|..+..+++|++|++++|.+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55666777777777777777764 1566655 7777777777777776677777777777777
Q ss_pred EEecCCc-CCC--cchhhcccc-------cccEEEecCCccCCCCCc--CcCCcCcccEEEEecccccccCCCCcCCCCc
Q 045504 95 LSLGSNE-LTS--IPLTFWNLK-------DILQLNCSSNFLTGPLPS--EIGNLKVLVIIDFSMNNFSGVIPTEIGGLKN 162 (229)
Q Consensus 95 l~l~~~~-~~~--~~~~~~~~~-------~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 162 (229)
|++++|. +.. +|..+..+. +|+.+++++|.+. ..|. .+..+++|++|++++|.+. ..| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7777776 653 565555444 7777777777776 5665 6777777777777777776 444 6677777
Q ss_pred cceeeecCccccCCCchhccCCCc-CcEEecCCccccCccchHhhccC--CCCeEEecCccCcCCCC
Q 045504 163 LEYLFLGYNRLQGSIPNSFGDLIS-LKSLNLSNNNLSGAIPASLEKLS--YLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~p 226 (229)
|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 777777777776 66666666666 777777777776 4454444443 37777777777766554
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1e-25 Score=185.06 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+.+|.++++|++|++++|.+.+..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+..
T Consensus 59 Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 59 LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp CCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSB
T ss_pred CCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccc
Confidence 4567777666677777777777777777777666677777777777777777776 34443 57777777777777764
Q ss_pred C-CCccccCCCCCcEEEecCCcCC
Q 045504 81 S-IPACFNNLASLRILSLGSNELT 103 (229)
Q Consensus 81 ~-~~~~~~~l~~L~~l~l~~~~~~ 103 (229)
. .|..+..+++|+.|++++|.+.
T Consensus 136 l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cCchHhhcccCcccEEecCCCccc
Confidence 2 2456777777777777777655
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-27 Score=181.33 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=171.6
Q ss_pred CCCCccEEEccCcccCCCCcccc--cCCCCccEEeccccccCCCCCccccCC-----CCccEEEccCccCCCCCCccccC
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITL--GKLQKLQGLGLEDNKLEGSIPDNICRL-----TELYELELGGNKLSGSIPACFNN 88 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 88 (229)
++++|++|++++|.+.+..|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+....+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 78999999999999998788776 8899999999999999865 7767665 89999999999999877789999
Q ss_pred CCCCcEEEecCCcCCC---cchhh--cccccccEEEecCCccCCC---CCcCcCCcCcccEEEEecccccccCC-CCcCC
Q 045504 89 LASLRILSLGSNELTS---IPLTF--WNLKDILQLNCSSNFLTGP---LPSEIGNLKVLVIIDFSMNNFSGVIP-TEIGG 159 (229)
Q Consensus 89 l~~L~~l~l~~~~~~~---~~~~~--~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~ 159 (229)
+++|+.|++++|.+.. ++..+ ..+++|+.+++++|.++.. ....+..+++|++|++++|.+.+..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 9999999999998653 23344 7889999999999998732 11334467899999999999987664 45667
Q ss_pred CCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 160 LKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|++|++++|++++.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 899999999999998 6676665 8999999999999866 44 88999999999999999863
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=195.42 Aligned_cols=93 Identities=26% Similarity=0.313 Sum_probs=51.5
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCcc--ccCCCCccEEEccCccCCCCCC-cccc
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDN--ICRLTELYELELGGNKLSGSIP-ACFN 87 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~ 87 (229)
|.+|.++++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+....+ ..+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 444555555555555555555445555555566666666665554333332 5556666666666666554333 3456
Q ss_pred CCCCCcEEEecCCcCC
Q 045504 88 NLASLRILSLGSNELT 103 (229)
Q Consensus 88 ~l~~L~~l~l~~~~~~ 103 (229)
++++|+.|++++|.+.
T Consensus 146 ~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCSSCCEEEEESSCCC
T ss_pred hCCCCCEEECCCCcCC
Confidence 6666666666665543
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=4.3e-26 Score=171.02 Aligned_cols=204 Identities=26% Similarity=0.300 Sum_probs=175.4
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
+..+++|+.|++.++.+.. . ..+..+++|++|++++|.+.. . ..+..+++|++|++.+|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5678899999999998873 2 357789999999999999874 3 4678899999999999999877777788999999
Q ss_pred EEEecCCcCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcc
Q 045504 94 ILSLGSNELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 172 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (229)
+|++.+|.+..++.. +..++.|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 999999999877664 6788999999999999886666778889999999999999998877778899999999999999
Q ss_pred ccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 173 LQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
+++..+..+..+++|++|++++|.+. +.++.++.++++.|.++|.+|.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence 98777777888999999999999875 34678899999999999988864
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.4e-26 Score=189.09 Aligned_cols=221 Identities=23% Similarity=0.212 Sum_probs=156.5
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 45556655566678889999999999998877777888899999999999998877777788899999999999998866
Q ss_pred CCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCC----------------cC-------
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGN----------------LK------- 137 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~----------------~~------- 137 (229)
.+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++......+.. .+
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeec
Confidence 55667888999999999998886654 6788899999999988876432111111 11
Q ss_pred --------------cccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccch
Q 045504 138 --------------VLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPA 203 (229)
Q Consensus 138 --------------~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 203 (229)
+|+.|++++|.+.+ +..+..+++|++|++++|.++...|..+..+++|++|++++|.+.+ ++.
T Consensus 219 s~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~ 295 (597)
T 3oja_B 219 SHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL 295 (597)
T ss_dssp CSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EEC
T ss_pred cCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCc
Confidence 23333333333332 2335556677777777777665556667777777777777777663 344
Q ss_pred HhhccCCCCeEEecCccCcCCCC
Q 045504 204 SLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 204 ~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.+..+++|+.|++++|.+. .+|
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~-~i~ 317 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL-HVE 317 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCG
T ss_pred ccccCCCCcEEECCCCCCC-ccC
Confidence 4455677777777777766 444
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=8.9e-26 Score=193.20 Aligned_cols=226 Identities=24% Similarity=0.237 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 35677777778888888999999999998887777888888899999999998887777788888889999999888886
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcch-----------------------------------------hhcccccccEEE
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPL-----------------------------------------TFWNLKDILQLN 119 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~-----------------------------------------~~~~~~~L~~l~ 119 (229)
..+..+..+++|+.|++++|.+..++. .+..++.|+.++
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 666778888888888888877654321 112455566666
Q ss_pred ecCCccCCCCC-cCcCCcCcccEEEEeccccc-----ccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecC
Q 045504 120 CSSNFLTGPLP-SEIGNLKVLVIIDFSMNNFS-----GVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLS 193 (229)
Q Consensus 120 l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 193 (229)
+++|.++...+ ..+..+++|+.|++++|.+. +..+..+.++++|+.|++++|.++...+..+..+++|++|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 66666553222 22334566666667666654 2334556777788888888888776666777778888888888
Q ss_pred CccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 194 NNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 194 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
+|.+++..+..+. ++|+.|++++|.+++..|..
T Consensus 513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 8888765544443 67888888888888777754
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.3e-26 Score=190.51 Aligned_cols=208 Identities=21% Similarity=0.204 Sum_probs=123.3
Q ss_pred CCCCccEEEccCcccCCC--CcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC-ccccCCCCC
Q 045504 16 NLTNLTTIFFGGNKLNGS--IPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP-ACFNNLASL 92 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 92 (229)
.+++|+.|++++|.+.+. .+..+..+++|++|++++|.+. ..+..+..+++|+.|++.+|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 444444444444444322 1444455555555555555554 233445556666666666666654444 455566666
Q ss_pred cEEEecCCcCCC-cchhhcccccccEEEecCCccCC-CCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecC
Q 045504 93 RILSLGSNELTS-IPLTFWNLKDILQLNCSSNFLTG-PLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 170 (229)
Q Consensus 93 ~~l~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (229)
+.+++++|.+.. .+..+..+++|+.+++.+|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 666666666553 34455666666666666666654 2455666666677777777666666666666666777777777
Q ss_pred ccccCCCchhccCCCcCcEEecCCccccCccchHhhccC-CCCeEEecCccCcCCC
Q 045504 171 NRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLS-YLEDLNLSFNKLEGEI 225 (229)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~ 225 (229)
|.+++..|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++.+..
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 7666555666666667777777777666 3333355665 4777777777666543
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.3e-26 Score=188.84 Aligned_cols=219 Identities=24% Similarity=0.244 Sum_probs=191.7
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCC--CCccccCCCCccEEEccCccCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGS--IPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
++|.+ +.+| .+ .+++|+.|++++|...+ +..+..+++|++|++++|.+... .+..+..+++|++|++.+|.+.
T Consensus 315 ~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 315 IRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp ESCCC-SSCC-CC-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred ccccC-cccc-cC-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 46777 6777 45 99999999999996543 23667899999999999998744 3677889999999999999987
Q ss_pred CCCCccccCCCCCcEEEecCCcCCCcch--hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccc-cCCCC
Q 045504 80 GSIPACFNNLASLRILSLGSNELTSIPL--TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSG-VIPTE 156 (229)
Q Consensus 80 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~ 156 (229)
. .+..+..+++|+.+++.+|.+...+. .+..++.|+.+++++|.+....+..+..+++|++|++++|.+.+ ..|..
T Consensus 390 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp E-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred c-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 4 55788899999999999998886643 67889999999999999987788889999999999999999987 47888
Q ss_pred cCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 157 IGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|.
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 999999999999999998777888999999999999999999888999999999999999999988 6664
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-24 Score=161.72 Aligned_cols=194 Identities=27% Similarity=0.296 Sum_probs=168.5
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++++++ .+|..+. ++++.|+++++.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 24 ~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 24 SSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred cCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 345555 3555444 6899999999999977777899999999999999999866666778899999999999999977
Q ss_pred CCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
.+..+..+++|+.|++.+|.+..++. .+..+++|+.+++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 77778899999999999999997765 56789999999999999986666678899999999999999998888889999
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 99999999999998666667888999999999999764
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.9e-26 Score=191.82 Aligned_cols=212 Identities=21% Similarity=0.265 Sum_probs=140.6
Q ss_pred CCcccc--CCCCccEEEccCcccCCCCcccccCCCCccEEeccccc-cCC-CCCccccC-------CCCccEEEccCccC
Q 045504 10 IPEEIT--NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK-LEG-SIPDNICR-------LTELYELELGGNKL 78 (229)
Q Consensus 10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~ 78 (229)
+|..++ ++++|+.|++++|.+.+.+|..+..+++|++|++++|+ ++. .+|..+.. +++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777766 88888888888888777888888888888888888887 654 35544433 34788888888877
Q ss_pred CCCCCc--cccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCc-ccEEEEecccccccCCC
Q 045504 79 SGSIPA--CFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKV-LVIIDFSMNNFSGVIPT 155 (229)
Q Consensus 79 ~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~ 155 (229)
. ..|. .+..+++|+.|++++|.+..+| .+..+++|+.+++++|.+. ..|..+..+++ |++|++++|.+. ..|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 7 5666 6777778888888877777666 6777777777777777776 56666677777 777777777766 4455
Q ss_pred CcCCCC--ccceeeecCccccCCCchhc---c--CCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 156 EIGGLK--NLEYLFLGYNRLQGSIPNSF---G--DLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 156 ~~~~~~--~L~~L~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.+.... +|+.|++++|.++...|... . .+++|++|++++|.+.......+..+++|+.|++++|.+. .+|
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 554443 36666666666654333211 1 1235666666666665333233335566666666666555 444
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6.3e-25 Score=170.19 Aligned_cols=212 Identities=27% Similarity=0.401 Sum_probs=148.6
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+....+ +..+++|++|++.+|.+..
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 35677765433 788888888888888554333 347788888888888888763332 6678888888888887764
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
..+ +..+++|+.+++.++.+...+. +..++.|+.+++++|.++...+ +..+++|++|++++|.+.+. ..+..+
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 322 6677778888887777776554 6667777777777777764322 66677777777777776643 346677
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 7777777777777633 346667777777777777776666677777777777777777765444
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=168.19 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=107.6
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+... .++..+++|++|++++|.+... +. +..+++|++|++++|..... ...+..+++|++|++.+|.+...
T Consensus 96 ~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 96 GTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCC
T ss_pred cCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCc
Confidence 34444432 2355556666666666555532 22 45555666666665543322 22245555666666665555422
Q ss_pred CCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLK 161 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 161 (229)
.+ +..+++|+.+++.+|.+..++. +..++.|+.+.+.++.+....+ +..+++|++|++++|.+.+..+ +..++
T Consensus 171 ~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~ 243 (347)
T 4fmz_A 171 TP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS 243 (347)
T ss_dssp GG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred hh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC
Confidence 22 4455566666666655555444 4555556666665555543222 4455556666666665553332 45555
Q ss_pred ccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 162 NLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
+|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 666666666555422 3345555666666666655533 234555566666666665543
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.4e-25 Score=167.32 Aligned_cols=198 Identities=20% Similarity=0.195 Sum_probs=172.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++.+|.+..
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 46788988888899999999999999999987777789999999999999999987777888999999999999999987
Q ss_pred CCCccccCCCCCcEEEecCCcCCC--cchhhcccccccEEEecCCccCCCCCcCcCCcCccc----EEEEecccccccCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTS--IPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLV----IIDFSMNNFSGVIP 154 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~----~l~l~~~~~~~~~~ 154 (229)
..+..+..+++|+.|++.+|.+.. +|..+..+++|+.+++++|.++...+..+..+++++ ++++++|.+.+..+
T Consensus 115 ~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 777678999999999999999986 678899999999999999998866556666666666 89999999987766
Q ss_pred CCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 155 TEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
..+.. .+|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 195 ~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 195 GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 66554 489999999999986666678889999999999998864
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=2.2e-25 Score=164.13 Aligned_cols=205 Identities=17% Similarity=0.215 Sum_probs=169.2
Q ss_pred CCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccc-cCCCCCccccCCCCccEEEccC-ccCCCCCCcc
Q 045504 8 GGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK-LEGSIPDNICRLTELYELELGG-NKLSGSIPAC 85 (229)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~ 85 (229)
..+|. +. ++++.|+++++.+.+..+..|..+++|++|++++|+ ++...+..|..+++|++|++.+ |.+....+..
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 34555 33 489999999999987777788899999999999997 8766666788999999999998 8888666678
Q ss_pred ccCCCCCcEEEecCCcCCCcchhhccccccc---EEEecCC-ccCCCCCcCcCCcCccc-EEEEecccccccCCCCcCCC
Q 045504 86 FNNLASLRILSLGSNELTSIPLTFWNLKDIL---QLNCSSN-FLTGPLPSEIGNLKVLV-IIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 86 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~l~-~l~l~~~~~~~~~~~~~~~~ 160 (229)
+..+++|+.+++.+|.+..+|. +..++.|+ .+++++| .+....+..+..+++|+ ++++++|.+..+.+..+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 8899999999999999988886 77777777 9999999 77755666788899999 9999999988666666666
Q ss_pred CccceeeecCcc-ccCCCchhccCC-CcCcEEecCCccccCccchHhhccCCCCeEEecCcc
Q 045504 161 KNLEYLFLGYNR-LQGSIPNSFGDL-ISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 161 ~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
++|++|++++|. ++...+..+..+ ++|++|++++|.++...+. .+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 799999999994 875556778888 8999999999999854433 67899999998763
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=184.93 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=145.9
Q ss_pred cCCCCccEEeccccccCCCC--CccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcch--hhccccc
Q 045504 39 GKLQKLQGLGLEDNKLEGSI--PDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL--TFWNLKD 114 (229)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~ 114 (229)
..+++|++|++++|.++... +..+..+++|++|++++|.+... +..+..+++|+.+++.+|.+...+. .+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45666777777776655222 44556677777777777776633 3337777888888888877765433 5677888
Q ss_pred ccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc-ccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecC
Q 045504 115 ILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS-GVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLS 193 (229)
Q Consensus 115 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 193 (229)
|+.+++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 888888888887667777888889999999998886 4677888889999999999998886668888888999999999
Q ss_pred CccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 194 NNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 194 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+|.+++..+..+..+++|++|++++|++.+..|.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9998877777788899999999999999988774
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.9e-25 Score=182.93 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..|.+|.++++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|++|++++|.+..
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 46788888888888999999999999998887777888888999999999998886666668888999999999988875
Q ss_pred C-CCccccCCCCCcEEEecCCc-CCCcc-hhhcccccccEEEecCCccCCCCCcCcCC
Q 045504 81 S-IPACFNNLASLRILSLGSNE-LTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGN 135 (229)
Q Consensus 81 ~-~~~~~~~l~~L~~l~l~~~~-~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 135 (229)
. .+..+..+++|+.+++.+|. +..++ ..+..+++|+.+++.++.+....+..+..
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 3 35677888889999998887 55565 36777888888888888776555555443
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=182.47 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+++..+.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++.+|.+..
T Consensus 35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 114 (570)
T 2z63_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (570)
T ss_dssp CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc
Confidence 46777887777788888888888888888876667778888888888888888876666778888888888888888876
Q ss_pred CCCccccCCCCCcEEEecCCcCCC--cchhhcccccccEEEecCCccCCCCCcCcCCcCcc----cEEEEecccccccCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTS--IPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVL----VIIDFSMNNFSGVIP 154 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l----~~l~l~~~~~~~~~~ 154 (229)
..+..+..+++|++|++++|.+.. +|..+..+++|+.+++.++.++...+..+..++++ ..+++++|.+.+..+
T Consensus 115 l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCH
Confidence 555567888888888888888774 57778888888888888887764444444444444 455555555444333
Q ss_pred C
Q 045504 155 T 155 (229)
Q Consensus 155 ~ 155 (229)
.
T Consensus 195 ~ 195 (570)
T 2z63_A 195 G 195 (570)
T ss_dssp T
T ss_pred H
Confidence 3
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=180.37 Aligned_cols=220 Identities=23% Similarity=0.201 Sum_probs=144.6
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCC-CCCccccCCCCccEEEccCccCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEG-SIPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
+++|.+++..|.+|+++++|++|++++|.+. .+|.. .+++|++|++++|.++. ..|..+..+++|++|++++|.+.
T Consensus 52 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 52 ISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 5788899888999999999999999999988 45554 78899999999999875 35678888899999988888775
Q ss_pred CCCCccccCCCCC--cEEEecCCcC--C-Ccchhhcc-------------------------------------------
Q 045504 80 GSIPACFNNLASL--RILSLGSNEL--T-SIPLTFWN------------------------------------------- 111 (229)
Q Consensus 80 ~~~~~~~~~l~~L--~~l~l~~~~~--~-~~~~~~~~------------------------------------------- 111 (229)
. ..+..+++| +.+++.+|.+ . ..|..+..
T Consensus 129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred h---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 3 223334444 5555544443 1 00110000
Q ss_pred ----------------------------------------cccccEEEecCCccCCCCCcCc------------------
Q 045504 112 ----------------------------------------LKDILQLNCSSNFLTGPLPSEI------------------ 133 (229)
Q Consensus 112 ----------------------------------------~~~L~~l~l~~~~~~~~~~~~~------------------ 133 (229)
.+.|+.+++.++.+.+..|..+
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 0123333333333222122111
Q ss_pred -----------------------------------CCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC--C
Q 045504 134 -----------------------------------GNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG--S 176 (229)
Q Consensus 134 -----------------------------------~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~ 176 (229)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .
T Consensus 286 n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp CCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred cceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 456677788888887777677777778888888888887764 3
Q ss_pred CchhccCCCcCcEEecCCccccCccch-HhhccCCCCeEEecCccCcCCCC
Q 045504 177 IPNSFGDLISLKSLNLSNNNLSGAIPA-SLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
.+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.+|
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 445677778888888888877763433 35566677777777776665544
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.4e-24 Score=176.87 Aligned_cols=76 Identities=29% Similarity=0.364 Sum_probs=59.3
Q ss_pred CCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 153 IPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
.|..+..+++|++|++++|.++...|.++.++++|++|++++|.+++..+..+..+++|++|++++|++++..|..
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 4455566677888888888887666777888888888888888888777777888888888888888888776643
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-25 Score=170.84 Aligned_cols=207 Identities=19% Similarity=0.164 Sum_probs=130.3
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|.+.+..|..|..+++|+.|++++|.+.+..+ +..+++|++|++++|.++. . ...++|++|++++|.+...
T Consensus 42 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l----~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L----LVGPSIETLHAANNNISRV 114 (317)
T ss_dssp TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E----EECTTCCEEECCSSCCSEE
T ss_pred cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c----cCCCCcCEEECCCCccCCc
Confidence 4556665555566666666666666666553322 5556666666666665542 1 1235566666666555432
Q ss_pred CCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCc-CCcCcccEEEEecccccccCCCCcCC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEI-GNLKVLVIIDFSMNNFSGVIPTEIGG 159 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~ 159 (229)
.+. .+++|+.+++++|.+..++. .+..++.|+.+++++|.+....+..+ ..+++|++|++++|.+.+... ...
T Consensus 115 ~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~ 189 (317)
T 3o53_A 115 SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV 189 (317)
T ss_dssp EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC
T ss_pred Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccc
Confidence 222 34667777777777776544 56667777777777777765444444 356777777777777765522 223
Q ss_pred CCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 160 LKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+++|++|++++|.++ ..+..+..+++|++|++++|.+. .++..+..+++|+.|++++|++.
T Consensus 190 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 677778888877776 34444666777888888887776 44556677778888888887776
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=3.2e-24 Score=163.52 Aligned_cols=195 Identities=26% Similarity=0.360 Sum_probs=166.7
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
+..+++|+.|++.++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4568999999999999874 44 57889999999999999985443 88999999999999998853 3688899999
Q ss_pred EEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccc
Q 045504 94 ILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 173 (229)
.|++++|.+..++. +..+++|+.+++++|.++...+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 99999999998765 8889999999999999875432 7788999999999999886544 88899999999999999
Q ss_pred cCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 174 QGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++. +. +..+++|++|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 186 ~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 744 32 788899999999999998655 37899999999999999875
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-25 Score=172.33 Aligned_cols=205 Identities=21% Similarity=0.205 Sum_probs=170.8
Q ss_pred CCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCC
Q 045504 10 IPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNL 89 (229)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 89 (229)
....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++...+ +..+++|++|++++|.+... ...
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~ 98 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVG 98 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EEC
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCC
Confidence 33445677899999999999998878899999999999999999874433 88899999999999988732 244
Q ss_pred CCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCc-CCCCccceeee
Q 045504 90 ASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI-GGLKNLEYLFL 168 (229)
Q Consensus 90 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l 168 (229)
++|+.+++.+|.+..++.. .++.|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 8999999999999876643 36789999999999987667788889999999999999987766665 46899999999
Q ss_pred cCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 169 GYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
++|.++.. +. ...+++|++|++++|.+.+. +..+..+++|++|++++|.+. .+|.
T Consensus 177 ~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhh
Confidence 99998743 32 33478999999999999854 445889999999999999988 4564
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.1e-25 Score=177.72 Aligned_cols=208 Identities=20% Similarity=0.176 Sum_probs=132.2
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+..|..|..+++|+.|++++|.+.+..+ +..+++|++|++++|.++. ++ ..++|++|++++|.+..
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISR 113 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCCC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECcCCcCCC
Confidence 34566666556666666666666666666653332 5566666666666666542 11 22566666666666653
Q ss_pred CCCccccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecCCccCCCCCcCcC-CcCcccEEEEecccccccCCCCcC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIG-NLKVLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~ 158 (229)
..+. .+++|+.|++++|.+..+ +..+..++.|+.|++++|.+++..+..+. .+++|++|++++|.+.+..+ ..
T Consensus 114 ~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~ 188 (487)
T 3oja_A 114 VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV 188 (487)
T ss_dssp EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC
T ss_pred CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc
Confidence 3322 346677777777777755 33566677777777777777655555444 56777777777777765532 22
Q ss_pred CCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 159 GLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
.+++|++|++++|.++. .+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 46777777777777763 4444666777777777777776 34555667777777777777766
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.6e-24 Score=174.34 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=175.2
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
++++++++ +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|+++...+.+|..+++|++|++++|.+.
T Consensus 38 ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~- 113 (562)
T 3a79_B 38 YSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ- 113 (562)
T ss_dssp CTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-
T ss_pred cCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-
Confidence 35677775 666554 89999999999999888889999999999999999999777888999999999999999998
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcc--hhhcccccccEEEecCCccCCCC-------------------------CcCc
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIP--LTFWNLKDILQLNCSSNFLTGPL-------------------------PSEI 133 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-------------------------~~~~ 133 (229)
..|.. .+++|+.|++++|.+..++ ..+..+++|+.++++++.+.... +..+
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccc
Confidence 44544 7899999999999998764 68888999999998888765311 1111
Q ss_pred CCc-----------------------------------------------------------------------------
Q 045504 134 GNL----------------------------------------------------------------------------- 136 (229)
Q Consensus 134 ~~~----------------------------------------------------------------------------- 136 (229)
..+
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 110
Q ss_pred ----CcccEEEEecccccccCCCCc-----------------------------------------------------CC
Q 045504 137 ----KVLVIIDFSMNNFSGVIPTEI-----------------------------------------------------GG 159 (229)
Q Consensus 137 ----~~l~~l~l~~~~~~~~~~~~~-----------------------------------------------------~~ 159 (229)
++|++|++++|.+.+..|..+ ..
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 145556666666554444433 56
Q ss_pred CCccceeeecCccccCCCchhccCCCcCcEEecCCccccCc--cchHhhccCCCCeEEecCccCcCCCCC
Q 045504 160 LKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGA--IPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|.
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 67899999999998877788888999999999999998863 345678899999999999999987774
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.6e-23 Score=168.38 Aligned_cols=195 Identities=30% Similarity=0.492 Sum_probs=124.0
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+....+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 4455555555555555543322 44455566666666555422 234556666666666666653322 55666677
Q ss_pred EEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccc
Q 045504 94 ILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 173 (229)
.+++.+|.+..++. +..++.|+.+++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 77776666665554 5566677777777776654322 5566777777777777765544 55677777788777777
Q ss_pred cCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 174 QGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++++
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 633 456777788888888888776555 6778888888888887775
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-25 Score=178.56 Aligned_cols=199 Identities=23% Similarity=0.228 Sum_probs=169.8
Q ss_pred CCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEE
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRIL 95 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 95 (229)
.+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 45599999999999998888899999999999999999874444 888999999999999987332 33899999
Q ss_pred EecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcC-CCCccceeeecCcccc
Q 045504 96 SLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIG-GLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 174 (229)
++++|.+..++.. .++.|+.+++++|.++...+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999877653 468899999999999877777888899999999999999987777765 7899999999999997
Q ss_pred CCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 175 GSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
.. +. ...+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|.
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch
Confidence 44 32 3458999999999999985544 48899999999999999984 664
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.7e-23 Score=156.85 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=173.4
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEe
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSL 97 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 97 (229)
.++..+.+..+.+... .....+++|+.|++.++.+.. . ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3444455555555422 345678999999999999873 2 3478899999999999998853 47889999999999
Q ss_pred cCCcCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCC
Q 045504 98 GSNELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 176 (229)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (229)
.+|.+..++.. +..+++|+.+++.+|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999987764 68899999999999999877777788999999999999999988888889999999999999999877
Q ss_pred CchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 177 IPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 677788999999999999999987777789999999999999999988773
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.9e-23 Score=165.09 Aligned_cols=127 Identities=28% Similarity=0.421 Sum_probs=56.2
Q ss_pred CCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceee
Q 045504 88 NLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167 (229)
Q Consensus 88 ~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 167 (229)
.+++|+.+++.+|.+...+. +..++.|+.+++.+|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 33444444444444333322 33344444444444444321 233344455555555555443322 44445555555
Q ss_pred ecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 168 LGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
+++|.++.. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 272 l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 272 LGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 555554422 11 4444555555555555443222 3444555555555554443
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.9e-24 Score=174.61 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=159.1
Q ss_pred CCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCC
Q 045504 3 NCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSI 82 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 82 (229)
+++++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|+++...+.++..+++|++|++++|.+.+..
T Consensus 14 ~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 44555 4555443 79999999999998777889999999999999999998777788999999999999999999777
Q ss_pred CccccCCCCCcEEEecCCcCCCc--chhhcccccccEEEecCCccCCCC-CcCcCCcCcccEEEEecccccccCCCCcCC
Q 045504 83 PACFNNLASLRILSLGSNELTSI--PLTFWNLKDILQLNCSSNFLTGPL-PSEIGNLKVLVIIDFSMNNFSGVIPTEIGG 159 (229)
Q Consensus 83 ~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 159 (229)
+..+..+++|++|++++|.+..+ +..+..+++|+.+++++|...... +..+..+++|++|++++|.+.+..|..+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 77799999999999999999854 567889999999999999843343 467889999999999999999888888888
Q ss_pred CCccceeeecCccccCCCchh-ccCCCcCcEEecCCccccC
Q 045504 160 LKNLEYLFLGYNRLQGSIPNS-FGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 199 (229)
+++|++|+++++.+. ..+.. +..+++|++|++++|.+.+
T Consensus 171 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 888888888887765 33333 3456777777777776654
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=164.58 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=165.7
Q ss_pred CCCccEEEccCcccCCCCcccc--cCCCCccEEeccccccCCCCC----ccccCCCCccEEEccCccCCCCCCccccCCC
Q 045504 17 LTNLTTIFFGGNKLNGSIPITL--GKLQKLQGLGLEDNKLEGSIP----DNICRLTELYELELGGNKLSGSIPACFNNLA 90 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 90 (229)
+++|+.|++++|.+.+..|..+ ..+++|++|++++|.++...+ ..+..+++|++|++++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3569999999999988888887 889999999999999875433 3345689999999999999877778899999
Q ss_pred CCcEEEecCCcCCC---cch--hhcccccccEEEecCCccCCCCCc----CcCCcCcccEEEEecccccccCCCCcCCC-
Q 045504 91 SLRILSLGSNELTS---IPL--TFWNLKDILQLNCSSNFLTGPLPS----EIGNLKVLVIIDFSMNNFSGVIPTEIGGL- 160 (229)
Q Consensus 91 ~L~~l~l~~~~~~~---~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~~~- 160 (229)
+|++|++++|.+.. ++. .+..+++|+.+++++|.++. .+. .+..+++|++|++++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 99999999998753 322 23578899999999998863 222 24567899999999999998767666665
Q ss_pred --CccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 161 --KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 161 --~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
++|++|++++|.++ .+|..+. ++|++|++++|.+++. +. +..+++|++|++++|+++++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 69999999999998 6666554 7999999999999854 22 57889999999999999863
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=9.7e-23 Score=151.02 Aligned_cols=180 Identities=25% Similarity=0.317 Sum_probs=150.3
Q ss_pred CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEe
Q 045504 18 TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSL 97 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 97 (229)
...+.++++++.+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46778999998887 5555443 58999999999998777778889999999999999998777778889999999999
Q ss_pred cCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCC
Q 045504 98 GSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 176 (229)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (229)
++|.+..++. .+..+++|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999987765 567888999999999988866666678888999999999988877777788888999999999988866
Q ss_pred CchhccCCCcCcEEecCCccccCc
Q 045504 177 IPNSFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~~~~ 200 (229)
.+..+..+++|++|++++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666788888999999998887643
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.5e-22 Score=160.74 Aligned_cols=200 Identities=25% Similarity=0.279 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.++.. + +..+++|++|++++|.+..
T Consensus 49 Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 49 CHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp CCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC
T ss_pred ccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe
Confidence 356666654 4 577777888888887777743 2 66777788888887777643 2 6677778888888777764
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
. + +..+++|+.+++.+|.++.++ +..++.|+.+++.+|...... .+..+++|++|++++|.+++. + +..+
T Consensus 121 l-~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l 190 (457)
T 3bz5_A 121 L-D--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQN 190 (457)
T ss_dssp C-C--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTC
T ss_pred e-c--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccC
Confidence 3 2 667777888888777777653 556667777777766433222 355667777777777777653 2 5666
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
++|+.|++++|.++.. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|++.+.
T Consensus 191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 7777777777777643 25666777777777777765 33 56677777777777777653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.1e-23 Score=155.11 Aligned_cols=185 Identities=27% Similarity=0.316 Sum_probs=163.5
Q ss_pred cccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhccccccc
Q 045504 37 TLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDIL 116 (229)
Q Consensus 37 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~ 116 (229)
.+..++++++++++++.++ .+|..+ .+.++.|++++|.+....+..+..+++|+.|++.+|.++.++.. ..++.|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3567889999999999998 555544 36899999999999877778899999999999999999987764 7889999
Q ss_pred EEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcc
Q 045504 117 QLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNN 196 (229)
Q Consensus 117 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 196 (229)
.+++++|.+. ..|..+..+++|++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999998 667778889999999999999998888889999999999999999987767778889999999999999
Q ss_pred ccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 197 LSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 197 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+....+..+..+++|++|++++|.+. .+|.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 99776677788999999999999998 6664
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.7e-24 Score=161.77 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=161.1
Q ss_pred CCCCCCCCCCccc--cCCCCccEEEccCcccCCCCcccccCC-----CCccEEeccccccCCCCCccccCCCCccEEEcc
Q 045504 2 SNCNVSGGIPEEI--TNLTNLTTIFFGGNKLNGSIPITLGKL-----QKLQGLGLEDNKLEGSIPDNICRLTELYELELG 74 (229)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 74 (229)
++|.+.+.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++....+..+..+++|++|+++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 5688888888876 8999999999999999866 7777776 899999999999997777889999999999999
Q ss_pred CccCCCC--CCccc--cCCCCCcEEEecCCcCCCcch----hhcccccccEEEecCCccCCCCC-cCcCCcCcccEEEEe
Q 045504 75 GNKLSGS--IPACF--NNLASLRILSLGSNELTSIPL----TFWNLKDILQLNCSSNFLTGPLP-SEIGNLKVLVIIDFS 145 (229)
Q Consensus 75 ~~~~~~~--~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~ 145 (229)
+|.+.+. .+..+ ..+++|+.|++++|.+..++. .+..+++|+.+++++|.+.+..+ ..+..+++|++|+++
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 9987543 22233 788999999999999985543 23467899999999999986554 456667899999999
Q ss_pred cccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 146 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
+|.++ ..|..+. ++|++|++++|.+++. |. +..+++|++|++++|.+++
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 99998 4555554 8999999999999854 65 8889999999999999875
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.1e-25 Score=169.95 Aligned_cols=223 Identities=19% Similarity=0.199 Sum_probs=154.9
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCC-CcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCc-cCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGS-IPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGN-KLS 79 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~ 79 (229)
++|.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|++++|.++...+..+..+++|++|++.+| .+.
T Consensus 78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 45556655554 45678888888888877643 6666777888888888888776556666777888888888887 454
Q ss_pred CC-CCccccCCCCCcEEEecCC-cCCC--cchhhcccc-cccEEEecCCc--cC-CCCCcCcCCcCcccEEEEeccc-cc
Q 045504 80 GS-IPACFNNLASLRILSLGSN-ELTS--IPLTFWNLK-DILQLNCSSNF--LT-GPLPSEIGNLKVLVIIDFSMNN-FS 150 (229)
Q Consensus 80 ~~-~~~~~~~l~~L~~l~l~~~-~~~~--~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~l~~l~l~~~~-~~ 150 (229)
.. .+..+..+++|+.|++.+| .++. ++..+..++ +|+.+++.+|. ++ ...+..+..+++|++|++++|. ++
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 32 3444667788888888888 7763 455677778 88888888873 33 1234455667888888888887 56
Q ss_pred ccCCCCcCCCCccceeeecCcc-ccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCCC
Q 045504 151 GVIPTEIGGLKNLEYLFLGYNR-LQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPTC 228 (229)
Q Consensus 151 ~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 228 (229)
+..+..+..+++|++|++++|. +.+.....++.+++|++|++++| +.+.....+. ..++.|++++|.+++..|..
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 5566677778888888888883 43333345677888888888888 5443333332 34666668888888877753
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.7e-22 Score=147.90 Aligned_cols=169 Identities=25% Similarity=0.291 Sum_probs=128.8
Q ss_pred CCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC
Q 045504 4 CNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 83 (229)
+.+. .+|..+. ++++.|+++++.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 24 ~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 24 KSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 3443 3444443 578888888888877777777888888888888888876666667778888888888888876666
Q ss_pred ccccCCCCCcEEEecCCcCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCc
Q 045504 84 ACFNNLASLRILSLGSNELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKN 162 (229)
Q Consensus 84 ~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 162 (229)
..+..+++|+.|++++|.+..++.. +..++.|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 6777788888888888888877664 467788888888888887555556777888888888888888777777778888
Q ss_pred cceeeecCccccC
Q 045504 163 LEYLFLGYNRLQG 175 (229)
Q Consensus 163 L~~L~l~~~~~~~ 175 (229)
|++|++++|.+..
T Consensus 181 L~~L~l~~N~~~c 193 (251)
T 3m19_A 181 LQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSCCBCT
T ss_pred CCEEEeeCCceeC
Confidence 8888888887763
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=5.8e-23 Score=151.14 Aligned_cols=190 Identities=21% Similarity=0.236 Sum_probs=160.2
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcc-cCCCCcccccCCCCccEEeccc-cccCCCCCccccCCCCccEEEccCccC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNK-LNGSIPITLGKLQKLQGLGLED-NKLEGSIPDNICRLTELYELELGGNKL 78 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~ 78 (229)
+++|.+++..+.+|+++++|+.|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++.+|.+
T Consensus 38 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp EESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred EeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 35788888888889999999999999997 8766667899999999999998 888866667888999999999999999
Q ss_pred CCCCCccccCCCCCc---EEEecCC-cCCCcch-hhccccccc-EEEecCCccCCCCCcCcCCcCcccEEEEeccc-ccc
Q 045504 79 SGSIPACFNNLASLR---ILSLGSN-ELTSIPL-TFWNLKDIL-QLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNN-FSG 151 (229)
Q Consensus 79 ~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~-~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~ 151 (229)
.. .|. +..+++|+ .+++++| .+..++. .+..++.|+ .++++++.++...+..+.. ++|++|++++|. +.+
T Consensus 118 ~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 118 KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCE
T ss_pred cc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCccc
Confidence 85 454 77888887 9999999 8988876 478899999 9999999988444445554 899999999995 887
Q ss_pred cCCCCcCCC-CccceeeecCccccCCCchhccCCCcCcEEecCCcc
Q 045504 152 VIPTEIGGL-KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNN 196 (229)
Q Consensus 152 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 196 (229)
..+..+.++ ++|++|++++|.++ ..+.. .+++|+.|++.++.
T Consensus 195 i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 878889999 99999999999998 44443 56799999998764
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.6e-23 Score=156.90 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=161.3
Q ss_pred CCCCCCCCCCCccc--cCCCCccEEEccCcccCCCCc----ccccCCCCccEEeccccccCCCCCccccCCCCccEEEcc
Q 045504 1 MSNCNVSGGIPEEI--TNLTNLTTIFFGGNKLNGSIP----ITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELG 74 (229)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 74 (229)
+++|.+.+..|..+ ..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp EESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred eeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 35789999999988 899999999999999986444 344578999999999999987777889999999999999
Q ss_pred CccCCCC--C--CccccCCCCCcEEEecCCcCCCcchh----hcccccccEEEecCCccCCCCCcCcCCc---CcccEEE
Q 045504 75 GNKLSGS--I--PACFNNLASLRILSLGSNELTSIPLT----FWNLKDILQLNCSSNFLTGPLPSEIGNL---KVLVIID 143 (229)
Q Consensus 75 ~~~~~~~--~--~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~~l~~l~ 143 (229)
+|++.+. . +..+..+++|++|++++|.++.++.. +..++.|+++++++|.+.+..|..+..+ ++|++|+
T Consensus 178 ~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 178 DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 9987531 1 23346789999999999999876653 4677999999999999987767666666 6999999
Q ss_pred EecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCc
Q 045504 144 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 200 (229)
+++|.++. .|..+. ++|++|++++|.+++. +. +..+++|++|++++|.+++.
T Consensus 258 Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 258 LSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 99999984 455553 7999999999999843 33 67789999999999998753
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.7e-25 Score=173.84 Aligned_cols=224 Identities=25% Similarity=0.280 Sum_probs=151.9
Q ss_pred CCCCCCCCCC----ccccCCCCccEEEccCcccC---CCCcccc-------cCCCCccEEeccccccCC----CCCcccc
Q 045504 2 SNCNVSGGIP----EEITNLTNLTTIFFGGNKLN---GSIPITL-------GKLQKLQGLGLEDNKLEG----SIPDNIC 63 (229)
Q Consensus 2 ~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~----~~~~~~~ 63 (229)
++|.+....+ ..+..+++|+.|+++++.+. +..|..+ ..+++|++|++++|.++. .++..+.
T Consensus 40 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 119 (386)
T 2ca6_A 40 SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119 (386)
T ss_dssp TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH
Confidence 4555554422 33556777777777775433 2233333 567778888888877764 2445566
Q ss_pred CCCCccEEEccCccCCCCCCcc----ccCC---------CCCcEEEecCCcCC--Ccc---hhhcccccccEEEecCCcc
Q 045504 64 RLTELYELELGGNKLSGSIPAC----FNNL---------ASLRILSLGSNELT--SIP---LTFWNLKDILQLNCSSNFL 125 (229)
Q Consensus 64 ~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~l~l~~~~~~--~~~---~~~~~~~~L~~l~l~~~~~ 125 (229)
.+++|++|++++|.+....+.. +..+ ++|+.|++++|.+. .++ ..+..++.|+.+.+++|.+
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 7778888888887765332222 2233 78888888888776 233 3556777888888888877
Q ss_pred CCC-----CCcCcCCcCcccEEEEeccccc----ccCCCCcCCCCccceeeecCccccCC----Cchhcc--CCCcCcEE
Q 045504 126 TGP-----LPSEIGNLKVLVIIDFSMNNFS----GVIPTEIGGLKNLEYLFLGYNRLQGS----IPNSFG--DLISLKSL 190 (229)
Q Consensus 126 ~~~-----~~~~~~~~~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L 190 (229)
+.. .+..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+++. ++..+. .+++|++|
T Consensus 200 ~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 521 2236667788888999888875 34566677888899999998888653 344553 37889999
Q ss_pred ecCCccccC----ccchHh-hccCCCCeEEecCccCcCCC
Q 045504 191 NLSNNNLSG----AIPASL-EKLSYLEDLNLSFNKLEGEI 225 (229)
Q Consensus 191 ~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~n~~~~~~ 225 (229)
++++|.+.+ .++..+ .++++|+.|++++|++++..
T Consensus 280 ~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999998886 356656 55799999999999888654
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.9e-22 Score=158.22 Aligned_cols=199 Identities=23% Similarity=0.236 Sum_probs=169.8
Q ss_pred CCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCcc
Q 045504 6 VSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPAC 85 (229)
Q Consensus 6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 85 (229)
..+..+.+++++++|++|+++++.+.+. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3444556788899999999999999854 4 688999999999999999853 3 78899999999999999864 2
Q ss_pred ccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccce
Q 045504 86 FNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEY 165 (229)
Q Consensus 86 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 165 (229)
+..+++|+.|++++|.+..++ +..+++|+.+++++|.++.. .+..+++|++|++++|...+.. .+..+++|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 788999999999999999875 78899999999999998853 3678899999999999644333 4778899999
Q ss_pred eeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 166 LFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
|++++|.++. .+ +..+++|++|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 9999999984 44 77889999999999999865 37789999999999999986 66
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.7e-24 Score=165.88 Aligned_cols=207 Identities=17% Similarity=0.149 Sum_probs=169.1
Q ss_pred ccccCC--CCccEEEccCcccCCCCcccccCCCCccEEeccccccCCC-CCccccCCCCccEEEccCccCCCCCCccccC
Q 045504 12 EEITNL--TNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGS-IPDNICRLTELYELELGGNKLSGSIPACFNN 88 (229)
Q Consensus 12 ~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 88 (229)
..+..+ ++++.|++.++.+.+..+. +..+++|++|++++|.++.. .+..+..+++|++|++.+|.+....+..+..
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 344455 8999999999998866555 45789999999999998643 6667788999999999999887666777888
Q ss_pred CCCCcEEEecCC-cCC--CcchhhcccccccEEEecCC-ccCCC-CCcCcCCcC-cccEEEEeccc--cc-ccCCCCcCC
Q 045504 89 LASLRILSLGSN-ELT--SIPLTFWNLKDILQLNCSSN-FLTGP-LPSEIGNLK-VLVIIDFSMNN--FS-GVIPTEIGG 159 (229)
Q Consensus 89 l~~L~~l~l~~~-~~~--~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~l~~l~l~~~~--~~-~~~~~~~~~ 159 (229)
+++|+.|++.+| .++ .++..+..+++|+.+++.+| .+++. .+..+..++ +|++|++++|. ++ +..+..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 999999999999 576 36667888999999999999 77643 355667788 99999999994 44 344556677
Q ss_pred CCccceeeecCcc-ccCCCchhccCCCcCcEEecCCcc-ccCccchHhhccCCCCeEEecCc
Q 045504 160 LKNLEYLFLGYNR-LQGSIPNSFGDLISLKSLNLSNNN-LSGAIPASLEKLSYLEDLNLSFN 219 (229)
Q Consensus 160 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n 219 (229)
+++|++|++++|. +++..+..+..+++|++|++++|. +.+.....+..+++|++|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8999999999998 776777788899999999999994 54444456888999999999999
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=149.25 Aligned_cols=184 Identities=22% Similarity=0.342 Sum_probs=156.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|++|++++|.+..
T Consensus 48 l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 48 AFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp CTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC
T ss_pred eeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC
Confidence 356777653 3 68899999999999999985443 8899999999999999874 3 368899999999999999985
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
. + .+..+++|+.|++++|.+..++. +..++.|+.+++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+
T Consensus 122 ~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l 194 (308)
T 1h6u_A 122 V-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASL 194 (308)
T ss_dssp C-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred c-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCC
Confidence 3 3 38899999999999999998776 8889999999999999875433 7889999999999999986544 7789
Q ss_pred CccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 161 KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
++|++|++++|.+++.. .+..+++|++|++++|.++.
T Consensus 195 ~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 99999999999998443 37889999999999999875
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.6e-24 Score=166.26 Aligned_cols=220 Identities=21% Similarity=0.207 Sum_probs=141.5
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCc----ccccCCC-CccEEeccccccCCCCCccccCC-----CCccE
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIP----ITLGKLQ-KLQGLGLEDNKLEGSIPDNICRL-----TELYE 70 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~ 70 (229)
++++++.+.+|..+...++|+.|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 46677777777777777778888888888876555 6667777 78888888888775555555443 78888
Q ss_pred EEccCccCCCCCCcc----ccCC-CCCcEEEecCCcCCCcch-h----hcc-cccccEEEecCCccCCCCCc----CcCC
Q 045504 71 LELGGNKLSGSIPAC----FNNL-ASLRILSLGSNELTSIPL-T----FWN-LKDILQLNCSSNFLTGPLPS----EIGN 135 (229)
Q Consensus 71 L~l~~~~~~~~~~~~----~~~l-~~L~~l~l~~~~~~~~~~-~----~~~-~~~L~~l~l~~~~~~~~~~~----~~~~ 135 (229)
|++++|.+....+.. +..+ ++|+.|++++|.++..+. . +.. ...|+.+++++|.+++.... .+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 888888877554443 3334 678888888887765443 2 223 24788888888777643322 2233
Q ss_pred cC-cccEEEEecccccccCCCC----cCCC-CccceeeecCccccCCC----chhccC-CCcCcEEecCCccccCccchH
Q 045504 136 LK-VLVIIDFSMNNFSGVIPTE----IGGL-KNLEYLFLGYNRLQGSI----PNSFGD-LISLKSLNLSNNNLSGAIPAS 204 (229)
Q Consensus 136 ~~-~l~~l~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~~~ 204 (229)
.+ +|++|++++|.+.+..+.. +... ++|++|++++|.+++.. +..+.. .++|++|++++|.+.+..+..
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 33 7777788777776544432 2333 47777777777776432 333333 347777777777776554322
Q ss_pred ----hhccCCCCeEEecCcc
Q 045504 205 ----LEKLSYLEDLNLSFNK 220 (229)
Q Consensus 205 ----l~~~~~L~~L~l~~n~ 220 (229)
+..+++|++|++++|.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHhcCCCccEEEeccCC
Confidence 2445667777776665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.7e-24 Score=167.55 Aligned_cols=224 Identities=19% Similarity=0.203 Sum_probs=171.1
Q ss_pred CCCCCCCCCCC----ccccCCC-CccEEEccCcccCCCCcccccCC-----CCccEEeccccccCCCCCcc----ccCC-
Q 045504 1 MSNCNVSGGIP----EEITNLT-NLTTIFFGGNKLNGSIPITLGKL-----QKLQGLGLEDNKLEGSIPDN----ICRL- 65 (229)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~----~~~l- 65 (229)
+++|.+.+..+ .+|..++ +|+.|++++|.+.+..+..+..+ ++|++|++++|.++...+.. +..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 108 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence 56788888777 7788888 99999999999987767766664 99999999999987555553 3344
Q ss_pred CCccEEEccCccCCCCCCccc----cC-CCCCcEEEecCCcCCC-----cchhhcccc-cccEEEecCCccCCCCCcC--
Q 045504 66 TELYELELGGNKLSGSIPACF----NN-LASLRILSLGSNELTS-----IPLTFWNLK-DILQLNCSSNFLTGPLPSE-- 132 (229)
Q Consensus 66 ~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~l~l~~~~~~~-----~~~~~~~~~-~L~~l~l~~~~~~~~~~~~-- 132 (229)
++|++|++++|.+....+..+ .. ..+|+.|++++|.++. ++..+...+ .|+.+++++|.+++..+..
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 899999999999986555443 33 3699999999998883 344455665 9999999999987555433
Q ss_pred --cCCc-CcccEEEEeccccccc----CCCCcCC-CCccceeeecCccccCCCch----hccCCCcCcEEecCCccccCc
Q 045504 133 --IGNL-KVLVIIDFSMNNFSGV----IPTEIGG-LKNLEYLFLGYNRLQGSIPN----SFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 133 --~~~~-~~l~~l~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~ 200 (229)
+... ++|++|++++|.+.+. .+..+.. .++|++|++++|.+++..+. .+..+++|++|++++|.+.+.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 3344 5999999999998853 2333433 45899999999999865543 346678999999999985443
Q ss_pred c-------chHhhccCCCCeEEecCccCcCC
Q 045504 201 I-------PASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 201 ~-------~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
. +..+..+++|++||+++|++.+.
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 23455678899999999998765
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.6e-21 Score=137.62 Aligned_cols=179 Identities=27% Similarity=0.306 Sum_probs=115.5
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 100 (229)
+.++..++.+. .+|..+ .++|++|++++|+++...+..+..+++|++|++.+|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666655 333332 357888888888877555556677788888888888777555556677777888888777
Q ss_pred cCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCch
Q 045504 101 ELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPN 179 (229)
Q Consensus 101 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 179 (229)
.+..++.. +..+++|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 77766543 456667777777776666444445566666677777666666555555666666666666666543
Q ss_pred hccCCCcCcEEecCCccccCccchHhhccC
Q 045504 180 SFGDLISLKSLNLSNNNLSGAIPASLEKLS 209 (229)
Q Consensus 180 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 209 (229)
+.++.|++|++..|.+.+.+|..++.++
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 2345566666666666666655555443
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.7e-21 Score=138.03 Aligned_cols=161 Identities=26% Similarity=0.267 Sum_probs=104.8
Q ss_pred CCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEE
Q 045504 17 LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILS 96 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 96 (229)
.++|++|+++++.+.+..+..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35677777777777655555566677777777777776655555556677777777777777655555566677777777
Q ss_pred ecCCcCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC
Q 045504 97 LGSNELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175 (229)
Q Consensus 97 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (229)
+++|.+..++.. +..+++|+.+++.+|.++...+..+..+++|++|++++|.+. ..++.|++|++..|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 777777665553 456677777777777766544455666677777777776543 234566677777776666
Q ss_pred CCchhccCC
Q 045504 176 SIPNSFGDL 184 (229)
Q Consensus 176 ~~~~~~~~~ 184 (229)
.+|..++.+
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 666655544
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2e-20 Score=149.64 Aligned_cols=194 Identities=30% Similarity=0.439 Sum_probs=81.4
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
++++++|+.|++++|.+.+ +|.. .++|++|++++|.+. .+|. +..+++|++|++++|.+.. .+.. +++|+
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~ 260 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLE 260 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCC
T ss_pred ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccC
Confidence 4444455555554444442 2211 124445555554444 2332 4455555555555555442 2211 24445
Q ss_pred EEEecCCcCCCcchhhcccccccEEEecCCccCC--CCCcCc-------------CCc-CcccEEEEecccccccCCCCc
Q 045504 94 ILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTG--PLPSEI-------------GNL-KVLVIIDFSMNNFSGVIPTEI 157 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~-------------~~~-~~l~~l~l~~~~~~~~~~~~~ 157 (229)
.+++++|.+..+|.. .+.|+.+++++|.+++ ..+..+ ... ++|++|++++|.+.+ .|..
T Consensus 261 ~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 261 ALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-
T ss_pred EEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-
Confidence 555555444443322 1345555555544432 111000 011 245555555555543 2221
Q ss_pred CCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC--ccchHhhcc-------------CCCCeEEecCccCc
Q 045504 158 GGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG--AIPASLEKL-------------SYLEDLNLSFNKLE 222 (229)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~n~~~ 222 (229)
+++|++|++++|.++ .+|. .+++|++|++++|.+.+ ..|..+..+ ++|++|++++|++.
T Consensus 336 --~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 --PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp --CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred --CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 356666677666665 3443 34677777777777765 455555555 66777777777776
Q ss_pred C--CCCCC
Q 045504 223 G--EIPTC 228 (229)
Q Consensus 223 ~--~~p~~ 228 (229)
+ .+|.+
T Consensus 410 ~~~~iP~s 417 (454)
T 1jl5_A 410 EFPDIPES 417 (454)
T ss_dssp --------
T ss_pred ccccchhh
Confidence 5 66643
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.4e-23 Score=163.53 Aligned_cols=214 Identities=17% Similarity=0.247 Sum_probs=168.8
Q ss_pred CCccccCCCCccEEEccCcccCCCCc----ccccCCCCccEEeccccccC---CCCCccc-------cCCCCccEEEccC
Q 045504 10 IPEEITNLTNLTTIFFGGNKLNGSIP----ITLGKLQKLQGLGLEDNKLE---GSIPDNI-------CRLTELYELELGG 75 (229)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~ 75 (229)
++..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+. ...|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55667788999999999999875433 44678999999999997544 2233333 6789999999999
Q ss_pred ccCCCC----CCccccCCCCCcEEEecCCcCCC-----cchhhccc---------ccccEEEecCCccCCC-CC---cCc
Q 045504 76 NKLSGS----IPACFNNLASLRILSLGSNELTS-----IPLTFWNL---------KDILQLNCSSNFLTGP-LP---SEI 133 (229)
Q Consensus 76 ~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~-----~~~~~~~~---------~~L~~l~l~~~~~~~~-~~---~~~ 133 (229)
|.+... .+..+..+++|+.|++++|.++. ++..+..+ +.|+.+++++|.++.. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 999863 45567889999999999998863 23334444 8999999999998632 23 355
Q ss_pred CCcCcccEEEEecccccc-----cCCCCcCCCCccceeeecCcccc----CCCchhccCCCcCcEEecCCccccCc----
Q 045504 134 GNLKVLVIIDFSMNNFSG-----VIPTEIGGLKNLEYLFLGYNRLQ----GSIPNSFGDLISLKSLNLSNNNLSGA---- 200 (229)
Q Consensus 134 ~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~---- 200 (229)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 577899999999998872 34447788999999999999985 35677788899999999999999866
Q ss_pred cchHhhc--cCCCCeEEecCccCcC
Q 045504 201 IPASLEK--LSYLEDLNLSFNKLEG 223 (229)
Q Consensus 201 ~~~~l~~--~~~L~~L~l~~n~~~~ 223 (229)
++..+.. +++|++|++++|.+++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCH
Confidence 3455533 8999999999999886
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=1e-20 Score=143.05 Aligned_cols=172 Identities=24% Similarity=0.354 Sum_probs=102.4
Q ss_pred cCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcE
Q 045504 15 TNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRI 94 (229)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 94 (229)
..+++|+.|+++++.+... + .+..+++|++|++++|+++...+ +..+++|++|++++|.+.. ...+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCE
Confidence 4556667777776666532 2 35566677777777766653322 5666667777777666653 223566666666
Q ss_pred EEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 95 LSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 95 l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
|++++|.+..+ ..+..++.|+.+++++|.++.. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 76666666655 2455566666666666666533 345556666666666666654433 555666666666666665
Q ss_pred CCCchhccCCCcCcEEecCCccccC
Q 045504 175 GSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 175 ~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
+ .+ .+..+++|++|++++|.+.+
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 22 35556666666666665543
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.7e-20 Score=152.72 Aligned_cols=81 Identities=31% Similarity=0.279 Sum_probs=59.5
Q ss_pred CcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEe
Q 045504 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNL 216 (229)
Q Consensus 137 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 216 (229)
++|++|++++|.++++ | ..+++|++|++++|.++ .+|. .+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 4566666666666642 2 34467788888888776 4444 4578899999999888 55777889999999999
Q ss_pred cCccCcCCCC
Q 045504 217 SFNKLEGEIP 226 (229)
Q Consensus 217 ~~n~~~~~~p 226 (229)
++|++++.+|
T Consensus 292 ~~N~l~~~~~ 301 (622)
T 3g06_A 292 EGNPLSERTL 301 (622)
T ss_dssp CSCCCCHHHH
T ss_pred cCCCCCCcCH
Confidence 9998876554
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=3.9e-24 Score=171.66 Aligned_cols=222 Identities=20% Similarity=0.191 Sum_probs=143.3
Q ss_pred CCCCCCCCC----CccccCCCCccEEEccCcccCCCCccccc-----CCCCccEEeccccccCCC----CCccccCCCCc
Q 045504 2 SNCNVSGGI----PEEITNLTNLTTIFFGGNKLNGSIPITLG-----KLQKLQGLGLEDNKLEGS----IPDNICRLTEL 68 (229)
Q Consensus 2 ~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L 68 (229)
++|.+++.. +..+..+++|+.|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 345555432 33445566777777776665533222222 244677777777766532 24445566777
Q ss_pred cEEEccCccCCCCC-----CccccCCCCCcEEEecCCcCCC-----cchhhcccccccEEEecCCccCCCCCcCcC----
Q 045504 69 YELELGGNKLSGSI-----PACFNNLASLRILSLGSNELTS-----IPLTFWNLKDILQLNCSSNFLTGPLPSEIG---- 134 (229)
Q Consensus 69 ~~L~l~~~~~~~~~-----~~~~~~l~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---- 134 (229)
++|++++|.+.... +..+..+++|+.|++++|.++. ++..+..++.|+.+++++|.+.+..+..+.
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 77777777665322 1122346778888888877774 555666677888888888776532222222
Q ss_pred -CcCcccEEEEeccccccc----CCCCcCCCCccceeeecCccccCCCchhccC-----CCcCcEEecCCccccC----c
Q 045504 135 -NLKVLVIIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSIPNSFGD-----LISLKSLNLSNNNLSG----A 200 (229)
Q Consensus 135 -~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~ 200 (229)
..++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 225788888888877644 3445556788999999998887544444432 5789999999998876 5
Q ss_pred cchHhhccCCCCeEEecCccCcC
Q 045504 201 IPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 201 ~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
.+..+..+++|++|++++|++++
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHhCCCccEEECCCCCCCH
Confidence 66677788999999999998764
No 90
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=1.6e-19 Score=144.37 Aligned_cols=206 Identities=29% Similarity=0.396 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+ +| +|+++++|++|++++|.+.+ +|.. .++|++|++++|+++. ++ .+..+++|++|++.+|.+.+
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 35666665 55 47777778888877777763 3332 2467777777776663 34 45666677777776666553
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCc-----------------CCcCcccEEE
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEI-----------------GNLKVLVIID 143 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-----------------~~~~~l~~l~ 143 (229)
.+.. .++|+.+++++|.+..+|. +..++.|+.+++++|.+.. .|... ...+++++|+
T Consensus 210 -l~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ 283 (454)
T 1jl5_A 210 -LPDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred -CCCC---cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEE
Confidence 2211 1345555555555554442 4455555555555554442 11111 0124556666
Q ss_pred Eeccccccc--CCCCcC-------------CC-CccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhc
Q 045504 144 FSMNNFSGV--IPTEIG-------------GL-KNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEK 207 (229)
Q Consensus 144 l~~~~~~~~--~~~~~~-------------~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 207 (229)
+++|.+.+. .|..+. .. ++|++|++++|.+++ +|.. +++|++|++++|.++. ++. .
T Consensus 284 ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~ 355 (454)
T 1jl5_A 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---L 355 (454)
T ss_dssp CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---C
T ss_pred CcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---h
Confidence 666655541 111111 11 356666666666652 3332 4678888888887773 333 4
Q ss_pred cCCCCeEEecCccCcC--CCCCC
Q 045504 208 LSYLEDLNLSFNKLEG--EIPTC 228 (229)
Q Consensus 208 ~~~L~~L~l~~n~~~~--~~p~~ 228 (229)
+++|++|++++|++.+ .+|..
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTT
T ss_pred hhhccEEECCCCCCCcCCCChHH
Confidence 6889999999999887 77754
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.4e-20 Score=142.33 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=144.1
Q ss_pred EEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcC
Q 045504 23 IFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNEL 102 (229)
Q Consensus 23 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 102 (229)
+.+....+.+. .....+++|+.|++++|.+... + .+..+++|++|++++|.+....+ +..+++|+.|++.+|.+
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 34444444322 2345678899999999888743 3 47788899999999998875433 78889999999999988
Q ss_pred CCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhcc
Q 045504 103 TSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFG 182 (229)
Q Consensus 103 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 182 (229)
..++. +..+++|+.+++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +.
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 87654 77888999999999888743 4677788899999999988765 567788899999999998875433 77
Q ss_pred CCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcC
Q 045504 183 DLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 223 (229)
.+++|++|++++|.+.+. + .+..+++|+.|++++|++.+
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 888999999999988754 3 37888999999999988764
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.9e-20 Score=151.01 Aligned_cols=182 Identities=25% Similarity=0.303 Sum_probs=138.0
Q ss_pred CccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEec
Q 045504 19 NLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLG 98 (229)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 98 (229)
+++.|+++++.+.+ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+.. .|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 88889998888875 55543 378899999998887 455 357888899999888885 454 544 88899998
Q ss_pred CCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCc
Q 045504 99 SNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178 (229)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 178 (229)
+|.++.+|. .+++|+.+++++|.++. .|. .+++|++|++++|.+.+ .|. +. ++|++|++++|.++ .+|
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 888888777 57888889998888874 443 45788889999988886 444 54 78889999988887 555
Q ss_pred hhccCCCcC-------cEEecCCccccCccchHhhccCCCCeEEecCccCcCCCCC
Q 045504 179 NSFGDLISL-------KSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 179 ~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5 443 66 88999988887 4566677788899999999988876653
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=4e-20 Score=153.63 Aligned_cols=209 Identities=22% Similarity=0.212 Sum_probs=168.5
Q ss_pred ccCCCCccEEEccCcccCC--CCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCC-CccccCCC
Q 045504 14 ITNLTNLTTIFFGGNKLNG--SIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSI-PACFNNLA 90 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~ 90 (229)
...+++|+.++++.+.+.. ..+..+..+.+|+++++..+... ..+..+..+++|+.+++..+...... ...+..+.
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccc
Confidence 3456777777777776542 23444556677788887777654 34455667888999988877665333 34577889
Q ss_pred CCcEEEecCCcCCCc-chhhcccccccEEEecCCccC-CCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeee
Q 045504 91 SLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLT-GPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFL 168 (229)
Q Consensus 91 ~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 168 (229)
+++.+++..+.+... +..+..++.++.+++.+|... ...|..+..+++|++|++++|.+.+..|..|.++++|++|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 999999999988754 446677889999999998754 346778889999999999999999999999999999999999
Q ss_pred cCccccCCCchhccCCCcCcEEecCCccccCccchHhhcc-CCCCeEEecCccCcC
Q 045504 169 GYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKL-SYLEDLNLSFNKLEG 223 (229)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~ 223 (229)
++|.++...+..+..+++|++|++++|.+....+..+..+ ++|+.|++++|++.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999987778889999999999999999998888888887 689999999999885
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=2e-19 Score=148.40 Aligned_cols=197 Identities=29% Similarity=0.348 Sum_probs=108.7
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
++|+++ .+|..+. ++|+.|++++|.+. .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+...
T Consensus 48 s~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 48 GESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp CSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC
T ss_pred cCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC
Confidence 456666 5555554 67888888887776 3333 4567777777777776 3333 456677777777766532
Q ss_pred CCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCc-----------------CCcCcccEEEE
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEI-----------------GNLKVLVIIDF 144 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-----------------~~~~~l~~l~l 144 (229)
+. .+++|+.|++.+|.++.+|.. +++|+.|++++|.++. .+..+ ..+++|+.|++
T Consensus 117 -~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L 188 (622)
T 3g06_A 117 -PA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSV 188 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred -CC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence 22 234455555555544444432 1344444444444332 11111 11245555666
Q ss_pred ecccccccCCCCc-----------------CCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhc
Q 045504 145 SMNNFSGVIPTEI-----------------GGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEK 207 (229)
Q Consensus 145 ~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 207 (229)
++|.+.++ |..+ ..+++|++|++++|.++ .+| ..+++|++|++++|.+.. ++. .
T Consensus 189 s~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~-lp~---~ 259 (622)
T 3g06_A 189 SDNQLASL-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTS-LPM---L 259 (622)
T ss_dssp CSSCCSCC-CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred CCCCCCCC-CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCc-CCc---c
Confidence 66555432 1111 11255666666666665 233 344677777777777763 333 5
Q ss_pred cCCCCeEEecCccCcCCCCC
Q 045504 208 LSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 208 ~~~L~~L~l~~n~~~~~~p~ 227 (229)
+++|+.|++++|.++ .+|.
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCG
T ss_pred cccCcEEeCCCCCCC-cCCH
Confidence 677888888888777 6664
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2e-23 Score=167.56 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCCCCC----CCCccccCCCCccEEEccCcccCCCCcccc-----cCCCCccEEeccccccCCCC----CccccCCCCc
Q 045504 2 SNCNVSG----GIPEEITNLTNLTTIFFGGNKLNGSIPITL-----GKLQKLQGLGLEDNKLEGSI----PDNICRLTEL 68 (229)
Q Consensus 2 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L 68 (229)
++|.++. .++..+..+++|+.|++++|.+....+..+ ...++|++|++++|+++... +..+..+++|
T Consensus 93 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 93 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred cCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCC
Confidence 4455542 335555666666666666665542222211 11334555555555544211 2223344555
Q ss_pred cEEEccCccCCCCCCcccc-----CCCCCcEEEecCCcCCC-----cchhhcccccccEEEecCCcc
Q 045504 69 YELELGGNKLSGSIPACFN-----NLASLRILSLGSNELTS-----IPLTFWNLKDILQLNCSSNFL 125 (229)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~ 125 (229)
++|++++|.+....+..+. ..++|+.|++.+|.++. ++..+..++.|+++++++|.+
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 5555555554322111111 13345555555554443 233334444555555554443
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=4.1e-20 Score=152.19 Aligned_cols=174 Identities=24% Similarity=0.360 Sum_probs=131.2
Q ss_pred ccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLR 93 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 93 (229)
+..+++|+.|+++++.+.. ++ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. . ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 4567888888888888763 33 46778888888888888874433 7778888888888888774 2 3577788888
Q ss_pred EEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccc
Q 045504 94 ILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 173 (229)
Q Consensus 94 ~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 173 (229)
.|++++|.+..++ .+..++.|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 8888888887764 467778888888888887644 566777888888888888776555 77788888888888887
Q ss_pred cCCCchhccCCCcCcEEecCCccccCc
Q 045504 174 QGSIPNSFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 200 (229)
++. ..+..+++|+.|++++|.+.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCC
Confidence 643 3577788888888888877653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.5e-19 Score=140.19 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=151.3
Q ss_pred CCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCC-ccccCCCCccE-EEccCccCCCC
Q 045504 4 CNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIP-DNICRLTELYE-LELGGNKLSGS 81 (229)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~ 81 (229)
++++ .+|..+ .++++.|++++|.++...+.+|.++++|++|++++|++.+.++ .+|..++++++ +.+..|++...
T Consensus 19 ~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 3444 456555 3689999999999986666788999999999999998754443 46778888765 45566888867
Q ss_pred CCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecC-CccCCCCCcCcCCcC-cccEEEEecccccccCCCCcC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSS-NFLTGPLPSEIGNLK-VLVIIDFSMNNFSGVIPTEIG 158 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~ 158 (229)
.+..|..+++|+.+++.+|.+..++. .+.....+..+++.. +.+....+..+..+. .++.|++++|.++++.+..+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~ 175 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence 77888899999999999998887665 344555667777755 344433334555543 578888888888866555554
Q ss_pred CCCccceeeecC-ccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCCCC
Q 045504 159 GLKNLEYLFLGY-NRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 159 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
..+++.+++.+ |.++...+.+|..+++|++|++++|.++...+. .+.+|+.|.+.++.-.+.+|
T Consensus 176 -~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 176 -GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp -TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC
T ss_pred -ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC
Confidence 45788888865 566644445678888888888888888744332 34566666666665555666
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=5.7e-20 Score=131.21 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=119.1
Q ss_pred cCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEE
Q 045504 63 CRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVII 142 (229)
Q Consensus 63 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 142 (229)
..+++|++|++.+|.+. ..+ .+..+++|+.|++.+|.+..++ .+..+++|+.+++++|.+++..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45667777777777776 333 4667777777777777665544 56677788888888888776566778888999999
Q ss_pred EEecccccccCCCCcCCCCccceeeecCcc-ccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccC
Q 045504 143 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKL 221 (229)
Q Consensus 143 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 221 (229)
++++|.+.+..+..+..+++|++|++++|. ++ ..+ .+..+++|++|++++|.+.+.. .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 999999887777778899999999999997 66 444 6888999999999999998643 678899999999999998
Q ss_pred cC
Q 045504 222 EG 223 (229)
Q Consensus 222 ~~ 223 (229)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 75
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=9e-20 Score=150.20 Aligned_cols=191 Identities=23% Similarity=0.323 Sum_probs=159.5
Q ss_pred CccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEec
Q 045504 19 NLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLG 98 (229)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 98 (229)
.+..+.+..+.+... ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+....+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 344455555555532 234678999999999999874 33 57889999999999999985544 8899999999999
Q ss_pred CCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCc
Q 045504 99 SNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 178 (229)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 178 (229)
+|.+..++ .+..++.|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..+
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99998876 688899999999999998753 4678899999999999999865 568899999999999999985545
Q ss_pred hhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCcCC
Q 045504 179 NSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLEGE 224 (229)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 224 (229)
+..+++|++|+|++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88899999999999999864 4588999999999999998854
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.7e-19 Score=140.40 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=76.1
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCcccc-CCCCccEEEccCccCCCCCCccccCCCCCcEEEecC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNIC-RLTELYELELGGNKLSGSIPACFNNLASLRILSLGS 99 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 99 (229)
+.++++++.+. .+|..+. +.++.|++++|+++...+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666655 3343322 3466666666666644444454 566666666666666644445566666666666666
Q ss_pred CcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCc---CCCCccceeeecCcccc
Q 045504 100 NELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEI---GGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 100 ~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 174 (229)
|.+..++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 65554433 23444445555554444443333444444444444444444443322222 23444444444444444
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.2e-19 Score=138.29 Aligned_cols=214 Identities=19% Similarity=0.150 Sum_probs=163.7
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCC-cccccCCCCccE-EeccccccCCCCCccccCCCCccEEEccCccC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSI-PITLGKLQKLQG-LGLEDNKLEGSIPDNICRLTELYELELGGNKL 78 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 78 (229)
+++|.++...+.+|.++++|++|++++|.+.+.+ +.+|.+++++++ +.+.+|++....+..|..+++|++|++.+|.+
T Consensus 37 Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc
Confidence 3578888777778999999999999999986544 457888988876 55666888877788899999999999999999
Q ss_pred CCCCCccccCCCCCcEEEecC-CcCCCcch-hhccc-ccccEEEecCCccCCCCCcCcCCcCcccEEEEec-ccccccCC
Q 045504 79 SGSIPACFNNLASLRILSLGS-NELTSIPL-TFWNL-KDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM-NNFSGVIP 154 (229)
Q Consensus 79 ~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~-~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~ 154 (229)
....+..+....++..+++.+ +.+..++. .+... ..++.+++.+|.++...+..+ ...+++++++.+ |.+..+.+
T Consensus 117 ~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCT
T ss_pred ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCH
Confidence 866666666777888888865 56666665 34444 468889999999884444444 556799999985 56776666
Q ss_pred CCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCc
Q 045504 155 TEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFN 219 (229)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 219 (229)
.+|.++++|++|++++|.++ .+|. ..+.+|++|.+.++.-.+..| .+..+++|+.+++.++
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 78899999999999999998 4443 234577777776665444555 3778999999998763
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.2e-19 Score=143.55 Aligned_cols=183 Identities=26% Similarity=0.354 Sum_probs=150.0
Q ss_pred CCCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCC
Q 045504 1 MSNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
+++|.+.+ +|..+ .++|+.|++++|.+. .+| ..+++|++|++++|.++. +|. +.. +|++|++++|.+..
T Consensus 66 Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 66 LNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred eCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 46788876 66655 389999999999998 555 457899999999999985 565 544 99999999999986
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCC
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGL 160 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 160 (229)
.|. .+++|+.|++++|.++.+|. .+++|+.+++++|.++. .|. +. ++|+.|++++|.++. .|. +..
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~- 200 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA-VPV- 200 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC-CC--
T ss_pred -CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh-HHH-
Confidence 444 67999999999999998887 57899999999999985 555 54 899999999999984 444 544
Q ss_pred Ccc-------ceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCC
Q 045504 161 KNL-------EYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSY 210 (229)
Q Consensus 161 ~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 210 (229)
+| +.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+..
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp --------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 77 99999999998 67877777999999999999999888887776543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.1e-19 Score=129.49 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=125.0
Q ss_pred cEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecCC
Q 045504 45 QGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSN 123 (229)
Q Consensus 45 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~ 123 (229)
+.++.+++.++ .+|..+ .++++.|++.+|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 455544 36899999999999876677888899999999999998866 567888899999999999
Q ss_pred ccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 124 FLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888655566788889999999999988888888888889999999999888666667888888999999888764
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=129.83 Aligned_cols=152 Identities=25% Similarity=0.303 Sum_probs=123.4
Q ss_pred ccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC-ccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEec
Q 045504 44 LQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP-ACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCS 121 (229)
Q Consensus 44 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~ 121 (229)
-+.++++++.++ .+|..+ .+.+++|++++|.+....+ ..+..+++|+.|++.+|.+..++. .+..+++|+.++++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358899998887 455544 3457899999999886544 457888999999999999887765 67888889999999
Q ss_pred CCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 122 SNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
+|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88888666667888888999999988888887888888888899999888888666778888888888888888775
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.8e-18 Score=126.24 Aligned_cols=153 Identities=27% Similarity=0.319 Sum_probs=124.2
Q ss_pred CccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEec
Q 045504 43 KLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCS 121 (229)
Q Consensus 43 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~ 121 (229)
.-+.++.++++++ .+|..+ .++|++|++++|.+....+..+..+++|+.|++++|.+..++. .+..++.|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4567888888887 555543 3789999999999998778888899999999999999988775 45778889999999
Q ss_pred CCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 122 SNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
+|.++...+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 98888666666788888999999998888 456677888889999999888875555677888888999998887763
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.6e-18 Score=125.75 Aligned_cols=151 Identities=22% Similarity=0.325 Sum_probs=134.8
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 100 (229)
+.++.+++.+. .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 5555443 68999999999998766778899999999999999999777889999999999999999
Q ss_pred cCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 101 ELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 101 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
.+..++.. +..++.|+.+++.+|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99988875 578999999999999999777888999999999999999999888888999999999999999875
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.1e-18 Score=124.98 Aligned_cols=150 Identities=29% Similarity=0.360 Sum_probs=92.5
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 100 (229)
+.++.+++.+. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555554 333322 256666666666666555555666666666666666665444455566666666666666
Q ss_pred cCCCcchh-hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 101 ELTSIPLT-FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 101 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
.+..++.. +..+++|+.|++++|.++ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66655543 455666666666666665 44555566666777777777666555556666677777777777665
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=6.5e-19 Score=137.11 Aligned_cols=175 Identities=25% Similarity=0.247 Sum_probs=115.3
Q ss_pred cEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCcccc-CCCCCcEEEecCCcCCCcch-hhcccccccEEEecC
Q 045504 45 QGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFN-NLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSS 122 (229)
Q Consensus 45 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~ 122 (229)
+.++++++.++ .+|..+ .+.++.|++++|.+....+..+. .+++|+.|++.+|.+..++. .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56677776666 344433 23467777777777655555555 67777777777777776653 466677777777777
Q ss_pred CccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhc---cCCCcCcEEecCCccccC
Q 045504 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSF---GDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 199 (229)
|.+....+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+ ..+++|++|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77765555566677777777777777776666777777777777777777764333344 446777777777777765
Q ss_pred ccchHhhccCC--CCeEEecCccCc
Q 045504 200 AIPASLEKLSY--LEDLNLSFNKLE 222 (229)
Q Consensus 200 ~~~~~l~~~~~--L~~L~l~~n~~~ 222 (229)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55556666665 366777777665
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=3.4e-19 Score=132.73 Aligned_cols=171 Identities=21% Similarity=0.272 Sum_probs=121.9
Q ss_pred CCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEE
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRIL 95 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 95 (229)
.+.+++.+++.++.+.+. + .+..+++|++|++++|.++. .+ .+..+++|++|++++|.+....+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 455666677777777632 2 56778888888888888873 34 57778888888888888875433 7788888888
Q ss_pred EecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC
Q 045504 96 SLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175 (229)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (229)
++++|.+..++.... +.|+.+++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 91 ~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 888888877665333 7778888887777642 3466777777777777777654 246667777777777777764
Q ss_pred CCchhccCCCcCcEEecCCccccCc
Q 045504 176 SIPNSFGDLISLKSLNLSNNNLSGA 200 (229)
Q Consensus 176 ~~~~~~~~~~~L~~L~l~~~~~~~~ 200 (229)
. ..+..+++|++|++++|.+...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5566677777777777776543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=124.31 Aligned_cols=152 Identities=23% Similarity=0.252 Sum_probs=132.9
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCC-ccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIP-DNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGS 99 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 99 (229)
+.++++++.++ .+|..+ ...+++|++++|.++...+ ..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999987 456544 3467899999999985534 4578899999999999999977777899999999999999
Q ss_pred CcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC
Q 045504 100 NELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175 (229)
Q Consensus 100 ~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (229)
|.+..++. .+..++.|+.+++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99998766 57889999999999999997778889999999999999999998889999999999999999998863
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.4e-18 Score=122.79 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=89.3
Q ss_pred cCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCC-cchhhcccccccE
Q 045504 39 GKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTS-IPLTFWNLKDILQ 117 (229)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~L~~ 117 (229)
..+++|++|++++|.+. .++ .+..+++|++|++.+|.+. .+..+..+++|+.|++++|.+.. .+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555666666666555 233 3555566666666665443 12345555666666666665553 3445555666666
Q ss_pred EEecCCccCCCCCcCcCCcCcccEEEEeccc-ccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcc
Q 045504 118 LNCSSNFLTGPLPSEIGNLKVLVIIDFSMNN-FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNN 196 (229)
Q Consensus 118 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 196 (229)
+++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++ .+ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666654445555666677777777775 4432 3 46667777777777777763 23 56667778888887777
Q ss_pred cc
Q 045504 197 LS 198 (229)
Q Consensus 197 ~~ 198 (229)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.1e-18 Score=130.08 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=134.0
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCC
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGS 81 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 81 (229)
+++.++... .+..+++|+.|+++++.+. ..+ .+..+++|++|++++|+++...+ +..+++|++|++++|.+...
T Consensus 27 ~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 27 GKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp TCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC
T ss_pred cCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc
Confidence 345555443 5788999999999999988 444 67889999999999999985443 88999999999999999853
Q ss_pred CCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCC
Q 045504 82 IPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLK 161 (229)
Q Consensus 82 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 161 (229)
+. +.. ++|+.|++++|.++.++ .+..+++|+.+++++|.+++. ..+..+++|++|++++|.+.+. ..+..++
T Consensus 101 -~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~ 172 (263)
T 1xeu_A 101 -NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLK 172 (263)
T ss_dssp -TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred -Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCC
Confidence 33 223 89999999999999875 588899999999999998754 3678889999999999999866 6688899
Q ss_pred ccceeeecCccccCC
Q 045504 162 NLEYLFLGYNRLQGS 176 (229)
Q Consensus 162 ~L~~L~l~~~~~~~~ 176 (229)
+|++|++++|.++..
T Consensus 173 ~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 173 KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCEEEEEEEEEECC
T ss_pred CCCEEeCCCCcccCC
Confidence 999999999988744
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.4e-18 Score=130.82 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=131.6
Q ss_pred CCCccEEEccCcccC--------------------CCCcccccC--------CCCccEEeccccccCCCCCccccCCCCc
Q 045504 17 LTNLTTIFFGGNKLN--------------------GSIPITLGK--------LQKLQGLGLEDNKLEGSIPDNICRLTEL 68 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L 68 (229)
+++|+.||++++.+. .....+|.. +++|+.+++.. .+..+...+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 577888888877765 122345566 77777777777 6665566667777777
Q ss_pred cEEEccCccCCCCCCccccCCCCCcEEEecCCcC----C-----------------------Ccch--------------
Q 045504 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNEL----T-----------------------SIPL-------------- 107 (229)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~----~-----------------------~~~~-------------- 107 (229)
+.+++..+.+....+.+|..+.++..+....... . .++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 7777777766545555565555555444332100 0 0000
Q ss_pred -------------hh-cccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccc-eeeecCcc
Q 045504 108 -------------TF-WNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLE-YLFLGYNR 172 (229)
Q Consensus 108 -------------~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 172 (229)
.+ ..++.|+.+++..+.++......|.++.+|+++++..| +..+...+|.++.+|+ .+.+.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 00 12567888888877777556677888888888888776 6667777788888888 888877 5
Q ss_pred ccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEe
Q 045504 173 LQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNL 216 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 216 (229)
++.....+|.+|++|+++++.++.+......++.+|++|+.++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 55455677888888888888888777667777788888887753
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.6e-17 Score=117.91 Aligned_cols=128 Identities=28% Similarity=0.342 Sum_probs=103.6
Q ss_pred cEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchh--hcccccccEEEecCCccCCCCCcCcCCcCcccEEEEec
Q 045504 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLT--FWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM 146 (229)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 146 (229)
+.++++++.+. ..|..+. .+++.|++.+|.+..++.. +..++.|+.|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888876 4455443 3788899998888877653 77888888999988888877777888888888899988
Q ss_pred ccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 147 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 88888878788888888889988888876667778888888888888888764
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.3e-20 Score=152.74 Aligned_cols=196 Identities=22% Similarity=0.212 Sum_probs=112.6
Q ss_pred cCCCCccEEEccCcccCCCCcccccCCCCccEEeccccc-------------cCCCCCccccCCCCccEEE-ccCccCCC
Q 045504 15 TNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK-------------LEGSIPDNICRLTELYELE-LGGNKLSG 80 (229)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 80 (229)
..+++|+.|+++++.+. .+|..++.+++|+.|++.++. .....+..+..+++|+.|+ +..+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45667777777777665 566666777777777765543 1223334445555555555 33332210
Q ss_pred CCC-----ccccC--CCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccC
Q 045504 81 SIP-----ACFNN--LASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVI 153 (229)
Q Consensus 81 ~~~-----~~~~~--l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 153 (229)
... ..+.. ...|+.|++++|.++.+|. +..++.|+.|++++|.++ ..|..+..+++|++|++++|.+++ .
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 000 00000 1246666666666666665 666666666666666666 455566666666667776666664 3
Q ss_pred CCCcCCCCccceeeecCccccCCC-chhccCCCcCcEEecCCccccCccc---hHhhccCCCCeEE
Q 045504 154 PTEIGGLKNLEYLFLGYNRLQGSI-PNSFGDLISLKSLNLSNNNLSGAIP---ASLEKLSYLEDLN 215 (229)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~ 215 (229)
| .+..+++|+.|++++|.++... |..+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3 5666666666776666666443 6666666666777776666654322 2233466666664
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=3.1e-17 Score=113.98 Aligned_cols=135 Identities=24% Similarity=0.171 Sum_probs=95.1
Q ss_pred CCCcEEEecCCcCC--CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceee
Q 045504 90 ASLRILSLGSNELT--SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLF 167 (229)
Q Consensus 90 ~~L~~l~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 167 (229)
++|+.|++.+|.+. .+|..+..++.|+.+++.+|.+... ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 4555555556666666666665533 5566677888888888887765666666688888888
Q ss_pred ecCccccCCC-chhccCCCcCcEEecCCccccCccc---hHhhccCCCCeEEecCccCcCCCCC
Q 045504 168 LGYNRLQGSI-PNSFGDLISLKSLNLSNNNLSGAIP---ASLEKLSYLEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 168 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~p~ 227 (229)
+++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. ++|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 8888887432 2677888889999999998876554 46788899999999998876 4553
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=5e-17 Score=112.95 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCccEEEccCcccC-CCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEE
Q 045504 18 TNLTTIFFGGNKLN-GSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILS 96 (229)
Q Consensus 18 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 96 (229)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56666666666665 44555556666666666666666533 4455566666666666666544444444456666666
Q ss_pred ecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCC---CCcCCCCccceeeecCccc
Q 045504 97 LGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIP---TEIGGLKNLEYLFLGYNRL 173 (229)
Q Consensus 97 l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 173 (229)
+++|.+..++. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~----------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDIST----------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGG----------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchh----------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 66655554431 1333444455555555555543322 2445555555555555544
Q ss_pred c
Q 045504 174 Q 174 (229)
Q Consensus 174 ~ 174 (229)
.
T Consensus 160 ~ 160 (168)
T 2ell_A 160 Q 160 (168)
T ss_dssp C
T ss_pred h
Confidence 3
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.5e-16 Score=111.48 Aligned_cols=129 Identities=25% Similarity=0.285 Sum_probs=86.7
Q ss_pred ccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEec
Q 045504 68 LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM 146 (229)
Q Consensus 68 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 146 (229)
.+.+++.++.+.. .|..+ .++++.|++.++.+..++. .+..++.|+.+++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3566777776663 33322 2577778887777776655 346677777777777777655555566777777777777
Q ss_pred ccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccC
Q 045504 147 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSG 199 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 199 (229)
|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77776666666777777777777777764444455667777777777777654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=7.9e-20 Score=149.63 Aligned_cols=182 Identities=23% Similarity=0.216 Sum_probs=146.7
Q ss_pred cCCCCccEEeccccccCCCCCccccCCCCccEEEccCcc-------------CCCCCCccccCCCCCcEEE-ecCCcCCC
Q 045504 39 GKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNK-------------LSGSIPACFNNLASLRILS-LGSNELTS 104 (229)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~l~-l~~~~~~~ 104 (229)
..++.|+.|++++|+++ .+|..+..+++|+.|++.++. ..+..|..+..+++|+.++ +..+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45788999999999987 778888899999999986654 2334455667777888777 44443332
Q ss_pred cch------hhcc--cccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCC
Q 045504 105 IPL------TFWN--LKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 176 (229)
Q Consensus 105 ~~~------~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (229)
++. .+.. ...|+.|++++|.++. .|. +..+++|+.|++++|.+. ..|..+..+++|++|++++|.++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 222 1111 2358899999999985 565 889999999999999998 667889999999999999999984
Q ss_pred CchhccCCCcCcEEecCCccccCcc-chHhhccCCCCeEEecCccCcCCCC
Q 045504 177 IPNSFGDLISLKSLNLSNNNLSGAI-PASLEKLSYLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p 226 (229)
+| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 66 7889999999999999999776 8899999999999999999997655
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=112.46 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=105.5
Q ss_pred cEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccc
Q 045504 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNN 148 (229)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 148 (229)
+.++++++.+. ..|..+ .++++.|++.+|.+..+|..+..+++|+.|++++|.++...+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56788888877 445443 257899999999999888888888999999999999887777788888999999999999
Q ss_pred ccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 149 FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 149 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
+.+..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88888888888999999999999888655667888889999999888764
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.4e-17 Score=140.16 Aligned_cols=142 Identities=26% Similarity=0.349 Sum_probs=81.6
Q ss_pred CccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCc
Q 045504 83 PACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKN 162 (229)
Q Consensus 83 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 162 (229)
+..+..+++|+.|++++|.+..++..+..++.|+.|++++|.++ ..|..+..+++|++|++++|.++ ..|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 44455566666666666666666665556666666666666665 45555666666666666666666 34555666666
Q ss_pred cceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCC-CCeEEecCccCcCCCCC
Q 045504 163 LEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSY-LEDLNLSFNKLEGEIPT 227 (229)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~p~ 227 (229)
|++|+|++|.++ .+|..++.+++|++|+|++|.+.+..+..+..... ...+++++|.+++.+|.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 666666666665 55555666666666666666666555554433211 12345555555555554
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.5e-15 Score=119.45 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=124.0
Q ss_pred cccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCC
Q 045504 13 EITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASL 92 (229)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 92 (229)
+|.++ +|+.+.+.+ .+......+|.++.+|+.+++..+.++.+...+|. ..+|+.+.+..+ +......+|..+++|
T Consensus 153 aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCC
Confidence 34443 355555543 33333445556666666666666555533334443 355666666532 443445566666777
Q ss_pred cEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEeccccc-----ccCCCCcCCCCccceee
Q 045504 93 RILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFS-----GVIPTEIGGLKNLEYLF 167 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~ 167 (229)
+.+.+..+ +..++.....-..|+.+.+.. .++.....+|.++++|+.+.+.++.+. .+...+|.++++|+.+.
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp CCEECCTT-CCEECTTTTTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred CEEecCCC-ccCccccccccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 77776543 444444322225677777643 333345577788888888888877654 46667788888888888
Q ss_pred ecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 168 LGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+.++ ++.....+|.+|.+|+.+.+..+ +......++.+| +|+.+++.+|...
T Consensus 307 l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 307 IPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred eCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 8754 55455677888888888888554 554566677788 8888888887654
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=5.9e-18 Score=139.75 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=71.4
Q ss_pred cccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCC-cCcCCcCcccEEEEecccccccCCCCcCCCCcc
Q 045504 85 CFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLP-SEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNL 163 (229)
Q Consensus 85 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 163 (229)
.+..+++|+.+.+..+....++..+..+++|+.+++++|.++.... ..+..+++|++|+++.+......+..+..+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 3444556666666555445566666677778888887776542211 234566777777776332222222223445666
Q ss_pred ceeeecC-----------ccccCCC-chhccCCCcCcEEecCCccccCccchHhhc-cCCCCeEEec
Q 045504 164 EYLFLGY-----------NRLQGSI-PNSFGDLISLKSLNLSNNNLSGAIPASLEK-LSYLEDLNLS 217 (229)
Q Consensus 164 ~~L~l~~-----------~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~ 217 (229)
++|++.+ +.+++.. ......+++|++|++..+.+++.....+.. +++|++|+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 6676662 3333221 122334566666666555555544444443 6666666664
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.8e-16 Score=110.32 Aligned_cols=128 Identities=27% Similarity=0.284 Sum_probs=112.0
Q ss_pred cEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCc-cccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecC
Q 045504 45 QGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPA-CFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSS 122 (229)
Q Consensus 45 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~ 122 (229)
++++++++.++ .+|..+. .++++|++.+|.+....+. .+..+++|+.|++++|.++.+ +..+..+++|+.+++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999987 5565443 3899999999999866554 488999999999999999977 56888999999999999
Q ss_pred CccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccC
Q 045504 123 NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 175 (229)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (229)
|.++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99987777778899999999999999998889999999999999999998874
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=9.9e-17 Score=109.22 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred CCCccEEEccCcccC-CCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEE
Q 045504 17 LTNLTTIFFGGNKLN-GSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRIL 95 (229)
Q Consensus 17 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 95 (229)
.++++.|++++|.+. +..|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 366777777777766 45566666677777777777766643 445666677777777776664455555556666666
Q ss_pred EecCCcCCCcc--hhhcccccccEEEecCCccC
Q 045504 96 SLGSNELTSIP--LTFWNLKDILQLNCSSNFLT 126 (229)
Q Consensus 96 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~ 126 (229)
++++|.++.++ ..+..+++|+.+++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 66666665543 34444455555555555444
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.6e-16 Score=108.22 Aligned_cols=125 Identities=21% Similarity=0.153 Sum_probs=77.0
Q ss_pred CcEEEecCCcCC--CcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeec
Q 045504 92 LRILSLGSNELT--SIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLG 169 (229)
Q Consensus 92 L~~l~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (229)
++.+++.+|.+. .+|..+..++.|+.+++.+|.++.. ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334444443333 3333333444444444444444422 345556677777777777665555555567778888888
Q ss_pred CccccCC-CchhccCCCcCcEEecCCccccCccc---hHhhccCCCCeEEecC
Q 045504 170 YNRLQGS-IPNSFGDLISLKSLNLSNNNLSGAIP---ASLEKLSYLEDLNLSF 218 (229)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 218 (229)
+|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8877632 23667778888888888888876554 4677888888887763
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.5e-17 Score=138.67 Aligned_cols=118 Identities=30% Similarity=0.352 Sum_probs=55.4
Q ss_pred cccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhccccc
Q 045504 35 PITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKD 114 (229)
Q Consensus 35 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 114 (229)
+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.++.+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 334444455555555555544 33333334555555555555554 3444444555555555555555555544555555
Q ss_pred ccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCC
Q 045504 115 ILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPT 155 (229)
Q Consensus 115 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 155 (229)
|+.|++.+|.+. ..|..+..+++|++|++++|.+.+..|.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 555555555444 3344444555555555555554444333
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=6e-16 Score=108.29 Aligned_cols=130 Identities=19% Similarity=0.126 Sum_probs=69.8
Q ss_pred CCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeee
Q 045504 89 LASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFL 168 (229)
Q Consensus 89 l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 168 (229)
+++|+.+++.+|.+..++......+.|+.+++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3444444444444443322111122444555555444422 34455566666666666666544444456666677777
Q ss_pred cCccccCCCch--hccCCCcCcEEecCCccccCccch---HhhccCCCCeEEecCccC
Q 045504 169 GYNRLQGSIPN--SFGDLISLKSLNLSNNNLSGAIPA---SLEKLSYLEDLNLSFNKL 221 (229)
Q Consensus 169 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~n~~ 221 (229)
++|.++ .++. .+..+++|++|++++|.+.+.... .+..+++|+.||+++|..
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 766665 3443 556666777777777766533221 356667777777766643
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.2e-15 Score=105.51 Aligned_cols=126 Identities=26% Similarity=0.382 Sum_probs=109.4
Q ss_pred cEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCC
Q 045504 45 QGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSN 123 (229)
Q Consensus 45 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~ 123 (229)
++++++++.++ .+|..+ .+++++|++.+|.+. ..|..+..+++|+.|++++|.+..++. .+..++.|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67889998887 555543 368999999999998 566888999999999999999998765 6888999999999999
Q ss_pred ccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 124 FLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998777778999999999999999999777778899999999999999875
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=5e-15 Score=116.43 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=163.2
Q ss_pred CCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCcc
Q 045504 6 VSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPAC 85 (229)
Q Consensus 6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 85 (229)
+......+|.+|++|+.+++.++.+......+|. +.+|+.+.+..+ +..+...+|..+++|+.+.+..+ +......+
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 3444556899999999999999988866666776 689999999854 66567788999999999999864 44455666
Q ss_pred ccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccC-----CCCCcCcCCcCcccEEEEecccccccCCCCcCC
Q 045504 86 FNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLT-----GPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGG 159 (229)
Q Consensus 86 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 159 (229)
|.. .+|+.+.+ .+.+..++. .+..+.+|+.+.+.++... ......|.++++|+.+.+.. .+..+...+|.+
T Consensus 245 F~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 245 FRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp TTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred ccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence 766 78999999 445666644 7788999999999877653 24567889999999999984 577788889999
Q ss_pred CCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccC-CCCeEEecCcc
Q 045504 160 LKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLS-YLEDLNLSFNK 220 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~ 220 (229)
+.+|+.+.+..+ ++.....+|.++ +|+++++.++.........+.+++ .++.|.+-.+.
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 999999999766 554667789998 999999999987766666666774 78888887664
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.5e-17 Score=137.34 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=19.7
Q ss_pred CCCCccEEEccCcccCCCCcccccC-CCC-ccEEeccccc
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLGK-LQK-LQGLGLEDNK 53 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~ 53 (229)
.+++|+.|+++++.+.+..+..+.. +++ |++|++++|.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 5677777777766654333333322 222 5555555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=8.7e-16 Score=107.49 Aligned_cols=111 Identities=22% Similarity=0.198 Sum_probs=67.6
Q ss_pred cccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCC
Q 045504 13 EITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASL 92 (229)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 92 (229)
.+.++.+|+.|++++|.+. .++......++|++|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3556677777777777776 3343323334777777777776633 456666777777777777664433444666677
Q ss_pred cEEEecCCcCCCcch--hhcccccccEEEecCCccC
Q 045504 93 RILSLGSNELTSIPL--TFWNLKDILQLNCSSNFLT 126 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~ 126 (229)
+.+++++|.+..++. .+..+++|+.+++.+|.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 777777766666554 4555555555555555554
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.4e-15 Score=114.07 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=142.1
Q ss_pred CccccC--------CCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccC----
Q 045504 11 PEEITN--------LTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKL---- 78 (229)
Q Consensus 11 ~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---- 78 (229)
+.+|.+ |++|+.|++.+ .+......+|..+++|+.+++..+.+..+.+.+|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 446777 99999999998 77767778899999999999999988767777777776666665544111
Q ss_pred CCCCCccc--------------------------------------------------cCCCCCcEEEecCCcCCCcch-
Q 045504 79 SGSIPACF--------------------------------------------------NNLASLRILSLGSNELTSIPL- 107 (229)
Q Consensus 79 ~~~~~~~~--------------------------------------------------~~l~~L~~l~l~~~~~~~~~~- 107 (229)
.......| ..+++|+.+++.+|.+..++.
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 00000000 126899999999999998887
Q ss_pred hhcccccccEEEecCCccCCCCCcCcCCcCccc-EEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCc
Q 045504 108 TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLV-IIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLIS 186 (229)
Q Consensus 108 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 186 (229)
.+..+.+|+.+.+..+ +....+.+|.++++|+ .+++.. .+..+.+.+|.++++|+.+++.++.++.....+|.++++
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 6788999999999987 6656778999999999 999998 777788899999999999999999888677789999999
Q ss_pred CcEEec
Q 045504 187 LKSLNL 192 (229)
Q Consensus 187 L~~L~l 192 (229)
|+.++.
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 999864
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=3e-17 Score=117.16 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=80.4
Q ss_pred CCCccEEeccccccCCCCCc------cccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhccccc
Q 045504 41 LQKLQGLGLEDNKLEGSIPD------NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKD 114 (229)
Q Consensus 41 l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 114 (229)
...++.+++..+.+....+. .+..+++|++|++++|.+.. .+ .+..+++|+.+++.+|.+..+|.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~------- 87 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIEN------- 87 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSS-------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccc-------
Confidence 34444444444444332222 44455555555555555543 22 44444555555555544444433
Q ss_pred ccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCc-hhccCCCcCcEEecC
Q 045504 115 ILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP-NSFGDLISLKSLNLS 193 (229)
Q Consensus 115 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 193 (229)
.+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 88 -----------------~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 88 -----------------LDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp -----------------HHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred -----------------hhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 333345566666666655542 2 34555666666766666652211 356666777777777
Q ss_pred CccccCccc----------hHhhccCCCCeEEecCccCc
Q 045504 194 NNNLSGAIP----------ASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 194 ~~~~~~~~~----------~~l~~~~~L~~L~l~~n~~~ 222 (229)
+|.+.+..+ ..+..+++|+.|| +++++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 776654322 2366777777776 55554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=5.9e-14 Score=98.21 Aligned_cols=128 Identities=27% Similarity=0.326 Sum_probs=67.0
Q ss_pred cEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCC
Q 045504 21 TTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSN 100 (229)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 100 (229)
+.+++.++.+. .+|..+ .++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555554 223221 245556666655555444444455555555555555555433344445555555555555
Q ss_pred cCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcccc
Q 045504 101 ELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 101 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
.++.+ .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSL-----------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Ccccc-----------------------CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44433 3334455556666666666665544444555666666666666554
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.4e-17 Score=116.85 Aligned_cols=135 Identities=22% Similarity=0.222 Sum_probs=99.3
Q ss_pred ccCCCCccEEEccCcccCCCCcc------cccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCCcccc
Q 045504 14 ITNLTNLTTIFFGGNKLNGSIPI------TLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIPACFN 87 (229)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 87 (229)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+. ..+..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666666666666655554 78889999999999999985 55 7888999999999999988 5566677
Q ss_pred CCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCC-cCcCCcCcccEEEEeccccccc
Q 045504 88 NLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLP-SEIGNLKVLVIIDFSMNNFSGV 152 (229)
Q Consensus 88 ~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~ 152 (229)
.+++|+.|++++|.+..++ .+..+++|+.+++.+|.+....+ ..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 7789999999999888766 56677777777777777653221 3455566666666666666544
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=7.6e-17 Score=133.13 Aligned_cols=206 Identities=17% Similarity=0.121 Sum_probs=122.9
Q ss_pred cCCCCccEEEccCcccCCC-CcccccCCCCccEEeccccccCC-CCCccccCCCCccEEEccC---------ccCCCCCC
Q 045504 15 TNLTNLTTIFFGGNKLNGS-IPITLGKLQKLQGLGLEDNKLEG-SIPDNICRLTELYELELGG---------NKLSGSIP 83 (229)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~---------~~~~~~~~ 83 (229)
..+++|+.|++++|.+... ....+..+++|++|++.+| ++. .++.....+++|++|++.. +.++....
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 3567888888888775532 2223456788888888877 321 1111223467788887733 22221111
Q ss_pred ccc-cCCCCCcEEEecCCcCCCcc-hhh-cccccccEEEec--C----CccCCCC-----CcCcCCcCcccEEEEecccc
Q 045504 84 ACF-NNLASLRILSLGSNELTSIP-LTF-WNLKDILQLNCS--S----NFLTGPL-----PSEIGNLKVLVIIDFSMNNF 149 (229)
Q Consensus 84 ~~~-~~l~~L~~l~l~~~~~~~~~-~~~-~~~~~L~~l~l~--~----~~~~~~~-----~~~~~~~~~l~~l~l~~~~~ 149 (229)
..+ ..+++|+.+.+..+.++... ..+ ..+++|+.+++. + +.++... +..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 122 23677888877666665322 222 346788888887 2 2333111 11244567788888866 44
Q ss_pred cccCCCCcC-CCCccceeeecCccccCCCchhc-cCCCcCcEEecCCccccCccch-HhhccCCCCeEEecCccCc
Q 045504 150 SGVIPTEIG-GLKNLEYLFLGYNRLQGSIPNSF-GDLISLKSLNLSNNNLSGAIPA-SLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 150 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~ 222 (229)
.+.....+. .+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 433333333 26788888888888765444444 5578888888888888654443 3345788888888888764
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.7e-16 Score=131.12 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCCccEEEccCcccCCCCccccc-CCCCccEEecccc-ccCCC-CCccccCCCCccEEEccCccCC
Q 045504 16 NLTNLTTIFFGGNKLNGSIPITLG-KLQKLQGLGLEDN-KLEGS-IPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
.+++|+.|+++++.+.+..+..+. .+++|++|++++| .++.. ++.....+++|++|++.+|.+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 455666666665555433333332 3555555555555 22210 1122224555555555555544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=6.6e-14 Score=97.28 Aligned_cols=105 Identities=23% Similarity=0.217 Sum_probs=76.9
Q ss_pred CcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCc
Q 045504 92 LRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 171 (229)
Q Consensus 92 L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (229)
.+.++++++.+..+|..+. ..++.+++.+|.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776542 67777788777777666667777777888888887777666666777777888888877
Q ss_pred cccCCCchhccCCCcCcEEecCCcccc
Q 045504 172 RLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
.++...+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777555556777777788888777665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.4e-13 Score=94.79 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=83.4
Q ss_pred cEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCcc
Q 045504 93 RILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 172 (229)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (229)
+.++++++.+..+|..+. ..|+.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887554 778888888888886667778888888888888888887766677888888888888888
Q ss_pred ccCCCchhccCCCcCcEEecCCcccc
Q 045504 173 LQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
++...+..+..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 87555555788888888888888775
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=6.1e-13 Score=92.39 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=78.8
Q ss_pred ccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEec
Q 045504 68 LYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSM 146 (229)
Q Consensus 68 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 146 (229)
.+.++++++.+.. .|..+ .++++.|++++|.+..+ +..+..++.|+.+++++|.++...+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4677888887773 44443 26788888888888876 44577788888888888888766666677788888888888
Q ss_pred ccccccCCCCcCCCCccceeeecCcccc
Q 045504 147 NNFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
|.+.+..+..+..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888776677888888888888888775
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=1e-12 Score=91.56 Aligned_cols=103 Identities=25% Similarity=0.305 Sum_probs=83.1
Q ss_pred cEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCc-chhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecc
Q 045504 69 YELELGGNKLSGSIPACFNNLASLRILSLGSNELTSI-PLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMN 147 (229)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 147 (229)
+.++++++.+. ..|..+. ++|+.|++++|.+..+ +..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57888888886 4455443 7889999999988877 446788889999999999888655566778889999999999
Q ss_pred cccccCCCCcCCCCccceeeecCcccc
Q 045504 148 NFSGVIPTEIGGLKNLEYLFLGYNRLQ 174 (229)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (229)
.+.+..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888776667888899999999998876
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=7.3e-15 Score=114.46 Aligned_cols=164 Identities=19% Similarity=0.151 Sum_probs=69.6
Q ss_pred CCccEEeccccccCCCCCcccc-----CCCCccEEEccCccCCCCCCccc-cCCCCCcEEEecCCcCCCcch-----hh-
Q 045504 42 QKLQGLGLEDNKLEGSIPDNIC-----RLTELYELELGGNKLSGSIPACF-NNLASLRILSLGSNELTSIPL-----TF- 109 (229)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~-----~~- 109 (229)
+.|+.|++++|.++......+. ..++|++|++++|.+.......+ ..+++|+.|++++|.++.... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3555566655555421111111 12455555555555442212111 123455555555555542211 11
Q ss_pred cccccccEEEecCCccCCC----CCcCcCCcCcccEEEEecccccccC----CCCcCCCCccceeeecCccccCCC----
Q 045504 110 WNLKDILQLNCSSNFLTGP----LPSEIGNLKVLVIIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGSI---- 177 (229)
Q Consensus 110 ~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---- 177 (229)
...+.|+.+++++|.+++. ....+...++|++|++++|.+.+.. ...+...++|+.|++++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234455555555554321 1122233445555555555544221 222333445555555555554321
Q ss_pred chhccCCCcCcEEecCCccccCccchHh
Q 045504 178 PNSFGDLISLKSLNLSNNNLSGAIPASL 205 (229)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l 205 (229)
...+..+++|++|++++|.+++.....+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 1222233455555555555544433333
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=7.9e-15 Score=114.25 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=108.6
Q ss_pred CCCccEEEccCccCCCCCCccc----c-CCCCCcEEEecCCcCCCc--chhhcccccccEEEecCCccCCCCCcCc----
Q 045504 65 LTELYELELGGNKLSGSIPACF----N-NLASLRILSLGSNELTSI--PLTFWNLKDILQLNCSSNFLTGPLPSEI---- 133 (229)
Q Consensus 65 l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~---- 133 (229)
++.|+.|++++|.+.......+ . ...+|+.|++++|.++.. ......+.+|+.+++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678889998888764332222 2 236888999988887632 1222345678888998888764332222
Q ss_pred -CCcCcccEEEEeccccccc----CCCCcCCCCccceeeecCccccCCC----chhccCCCcCcEEecCCccccCccc--
Q 045504 134 -GNLKVLVIIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSI----PNSFGDLISLKSLNLSNNNLSGAIP-- 202 (229)
Q Consensus 134 -~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-- 202 (229)
...++|++|++++|.+... .+..+...++|++|++++|.+++.. ...+...++|++|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356789999999887642 3333456778899999998876533 4455667789999999998876433
Q ss_pred --hHhhccCCCCeEEecCccCcC
Q 045504 203 --ASLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 203 --~~l~~~~~L~~L~l~~n~~~~ 223 (229)
..+..+++|++|++++|.+++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 345567889999999988763
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=8.6e-11 Score=92.37 Aligned_cols=201 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCC-----------
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLS----------- 79 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------- 79 (229)
..+|.+|++|+.+.+.++... ....+|..+.+|+.+.+..+ +..+...+|..+..|+.+.+..+...
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 346777888888887655322 45566777777887777654 33244455555666665554433211
Q ss_pred ----------CCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccc
Q 045504 80 ----------GSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNF 149 (229)
Q Consensus 80 ----------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 149 (229)
......+..+..++.+.+..+...--...+..+..++.+......+ ....+..+.+|+.+.+..+ +
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-c
Confidence 0111222333344444443321111112333444444444433222 2245667788888888654 5
Q ss_pred cccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCc
Q 045504 150 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFN 219 (229)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 219 (229)
..+...+|.++.+|+.+++..+ ++.....+|.+|.+|+++.+..+ +......++.+|.+|+.+++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5567778889999999998765 44455678888999999999776 55566778889999999988764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=95.31 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=82.1
Q ss_pred EEEecCC-cCCCcchhhcccccccEEEecC-CccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCc
Q 045504 94 ILSLGSN-ELTSIPLTFWNLKDILQLNCSS-NFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 171 (229)
Q Consensus 94 ~l~l~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (229)
.++.+++ .+..+|. +..+.+|+.|++++ |.+....+..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 7888888 88888888999885 8887555577888888999999999888888888888888999999988
Q ss_pred cccCCCchhccCCCcCcEEecCCcccc
Q 045504 172 RLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
.++...+..+..++ |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88755555565554 888888888775
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=1.4e-10 Score=91.18 Aligned_cols=106 Identities=10% Similarity=0.170 Sum_probs=70.2
Q ss_pred ccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEE
Q 045504 111 NLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSL 190 (229)
Q Consensus 111 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 190 (229)
.+..|+.+.+...... .....+.++.+|+.+.+. +.+..+...+|.++.+|+.+.+.++ ++.....+|.+|.+|+++
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3444555554433221 233455566667766664 3344566677888888888888765 443556778888899999
Q ss_pred ecCCccccCccchHhhccCCCCeEEecCcc
Q 045504 191 NLSNNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 191 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
.+..+ ++.....++.+|.+|+.+++.++.
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 88654 555667788889999999888763
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=3.3e-11 Score=93.09 Aligned_cols=97 Identities=23% Similarity=0.243 Sum_probs=83.5
Q ss_pred CCCCCCCccccCCCCccEEEccC-cccCCCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCCCCCC
Q 045504 5 NVSGGIPEEITNLTNLTTIFFGG-NKLNGSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLSGSIP 83 (229)
Q Consensus 5 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 83 (229)
+++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|++|+|++|++....+..|..+++|++|++++|.+....+
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 555 4777 99999999999996 99987777889999999999999999998788888999999999999999996666
Q ss_pred ccccCCCCCcEEEecCCcCCC
Q 045504 84 ACFNNLASLRILSLGSNELTS 104 (229)
Q Consensus 84 ~~~~~l~~L~~l~l~~~~~~~ 104 (229)
..+..++ |+.|++.+|.+..
T Consensus 98 ~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTTCSCC-CCEEECCSSCCCC
T ss_pred HHcccCC-ceEEEeeCCCccC
Confidence 6666555 9999999998773
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=3.6e-11 Score=93.07 Aligned_cols=199 Identities=18% Similarity=0.136 Sum_probs=110.2
Q ss_pred CCccEEEccCcccCC-CC-------cccccCCCCccEEeccccccC---------CCCCccccCCCCccEEEccCccCCC
Q 045504 18 TNLTTIFFGGNKLNG-SI-------PITLGKLQKLQGLGLEDNKLE---------GSIPDNICRLTELYELELGGNKLSG 80 (229)
Q Consensus 18 ~~L~~L~l~~~~~~~-~~-------~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~ 80 (229)
..++.|.+..+...+ .. ..+...+++|+.|.+...... ..+...+..+|+|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 345667666544321 11 222345678888887653221 112334456788888888776311
Q ss_pred CCCccccCCCCCcEEEecCCcCCCcc-hhh--cccccccEEEecCC--ccC-CC----CCcCc--CCcCcccEEEEeccc
Q 045504 81 SIPACFNNLASLRILSLGSNELTSIP-LTF--WNLKDILQLNCSSN--FLT-GP----LPSEI--GNLKVLVIIDFSMNN 148 (229)
Q Consensus 81 ~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~--~~~~~L~~l~l~~~--~~~-~~----~~~~~--~~~~~l~~l~l~~~~ 148 (229)
..+. + .+++|+.|.+..+.+..-. ..+ ..++.|+.|+++.+ ... +. ....+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1222 3 3678888888777665221 122 25778888877431 111 00 00112 236778888888777
Q ss_pred ccccCCCCc---CCCCccceeeecCccccCCCchhc----cCCCcCcEEecCCccccCccchHhhccCCCCeEEecCcc
Q 045504 149 FSGVIPTEI---GGLKNLEYLFLGYNRLQGSIPNSF----GDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNK 220 (229)
Q Consensus 149 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 220 (229)
+....+..+ ..+++|++|+++.|.+++.....+ ..+++|++|++++|.+++.....+...- ...++++++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 653211111 245678888888777765332222 3457788888888877766555555411 4567776654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=3.7e-10 Score=87.43 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=113.9
Q ss_pred CCccEEeccccccCC-C-------CCccccCCCCccEEEccCccCC---------CCCCccccCCCCCcEEEecCCcCCC
Q 045504 42 QKLQGLGLEDNKLEG-S-------IPDNICRLTELYELELGGNKLS---------GSIPACFNNLASLRILSLGSNELTS 104 (229)
Q Consensus 42 ~~L~~L~l~~~~~~~-~-------~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~l~l~~~~~~~ 104 (229)
.+++.|.+....... . +..+...+++|+.|.+...... ......+..+|+|+.|.+.++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 467777777544321 1 1222345789999988654321 1122345677999999998773223
Q ss_pred cchhhcccccccEEEecCCccCCCCCcCcC--CcCcccEEEEecc--ccccc-----CCCCc--CCCCccceeeecCccc
Q 045504 105 IPLTFWNLKDILQLNCSSNFLTGPLPSEIG--NLKVLVIIDFSMN--NFSGV-----IPTEI--GGLKNLEYLFLGYNRL 173 (229)
Q Consensus 105 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~~l~~l~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~~ 173 (229)
++. + ..++|+.|.+..+.+.......+. .+++|+.|+++.+ ...+. ....+ ..+++|++|++.+|.+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 333 2 378899999988776532222232 5789999998642 11111 11122 3478999999999887
Q ss_pred cCCCchhc---cCCCcCcEEecCCccccCccch----HhhccCCCCeEEecCccCcC
Q 045504 174 QGSIPNSF---GDLISLKSLNLSNNNLSGAIPA----SLEKLSYLEDLNLSFNKLEG 223 (229)
Q Consensus 174 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~~ 223 (229)
.+.....+ ..+++|++|+++.|.+.+..+. .+..+++|+.|++++|.+++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 64333333 2468999999999998875433 33567999999999998764
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=7e-09 Score=81.47 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=88.2
Q ss_pred cccCCCCCcEEEecCCcCCCcc-hhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCcc
Q 045504 85 CFNNLASLRILSLGSNELTSIP-LTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNL 163 (229)
Q Consensus 85 ~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 163 (229)
+|..+.+|+.+.+...- ..+. ..+..+..|+.+.+.. .++......|.++.+|+.+.+..+ ++.+...+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 34455666666664432 2232 3567788999999864 344355678999999999999764 666778899999999
Q ss_pred ceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeEEecCccCc
Q 045504 164 EYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 222 (229)
+.+.+..+ ++.....+|.+|.+|+.+++.++... ...+..+..|+.+.+..+.+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 99999765 55577789999999999999987542 134567889999988776543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=4.3e-09 Score=82.67 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=132.1
Q ss_pred CccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccccc---------------------cCCCCCccccCCCCcc
Q 045504 11 PEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLEDNK---------------------LEGSIPDNICRLTELY 69 (229)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------~~~~~~~~~~~l~~L~ 69 (229)
..+|.++.+|+.+++..+ +......+|.++..|+.+.+..+. ++.....++..+..++
T Consensus 178 ~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCC
T ss_pred cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccce
Confidence 456778888888887654 222333445555555544443221 1112334456677788
Q ss_pred EEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcchhhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccc
Q 045504 70 ELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPLTFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNF 149 (229)
Q Consensus 70 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 149 (229)
.+.+..+... .....+..+..++.+......+. ...+..+..|+.+.+..+ +......+|.++.+|+.+++..+ +
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 8877665433 45566778888888887654322 235667889999988764 44355678899999999999754 6
Q ss_pred cccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCCCeE
Q 045504 150 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYLEDL 214 (229)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 214 (229)
+.+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+++++..+. . .....+.+|.+|+.+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 6677889999999999999877 554667789999999999997552 2 233467778887765
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.92 E-value=1.3e-09 Score=75.15 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=60.6
Q ss_pred CcccEEEEecccccccCCCCcCCCCccceeeecCcc-ccCCCchhccCC----CcCcEEecCCcc-ccCccchHhhccCC
Q 045504 137 KVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPNSFGDL----ISLKSLNLSNNN-LSGAIPASLEKLSY 210 (229)
Q Consensus 137 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~ 210 (229)
..|+.|+++++.++......+.++++|++|++++|. +++.....+... +.|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357788888877766655666777888888888873 666555556553 368888888874 77766667777888
Q ss_pred CCeEEecCcc
Q 045504 211 LEDLNLSFNK 220 (229)
Q Consensus 211 L~~L~l~~n~ 220 (229)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=1.8e-07 Score=72.98 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=59.1
Q ss_pred hhcccccccEEEecCCccCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcC
Q 045504 108 TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISL 187 (229)
Q Consensus 108 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 187 (229)
.+..+..|+.+.+..+ ++......+..+.+++.+.+..+ +..+....|.++.+|+.+.+.++.++.....+|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3445556666666543 22233445555666666666433 333445556666666666666655544445566666666
Q ss_pred cEEecCCccccCccchHhhccCCCCeEEec
Q 045504 188 KSLNLSNNNLSGAIPASLEKLSYLEDLNLS 217 (229)
Q Consensus 188 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 217 (229)
+.+.+..+ ++.....++.+|.+|+.+.+.
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 66666543 333444556666666666553
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=1.8e-07 Score=72.95 Aligned_cols=146 Identities=13% Similarity=0.095 Sum_probs=104.4
Q ss_pred cccCCCCccEEEccCccCCCCCCccccCCCCCcEEEecCCcCCCcch-hhcccccccEEEecCCccCCCCCcCcCCcCcc
Q 045504 61 NICRLTELYELELGGNKLSGSIPACFNNLASLRILSLGSNELTSIPL-TFWNLKDILQLNCSSNFLTGPLPSEIGNLKVL 139 (229)
Q Consensus 61 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 139 (229)
++.....++.+.+..+ +.......+..+.+|+.+.+..+ +..+.. .+..+..|+.+.+... +.......+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445556666666443 22234456777888888888654 555544 5667888999988654 333455788889999
Q ss_pred cEEEEecccccccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCccccCccchHhhccCCC
Q 045504 140 VIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLSYL 211 (229)
Q Consensus 140 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 211 (229)
+.+.+..+.+..+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+++.+..+ ++.....++.+|+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999988888788889999999999999765 44455678999999999999765 444555666666543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.3e-09 Score=76.60 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=36.6
Q ss_pred CCccceeeecCccccCC----CchhccCCCcCcEEec--CCccccCcc----chHhhccCCCCeEEecCccCc
Q 045504 160 LKNLEYLFLGYNRLQGS----IPNSFGDLISLKSLNL--SNNNLSGAI----PASLEKLSYLEDLNLSFNKLE 222 (229)
Q Consensus 160 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 222 (229)
.++|++|++++|.+++. +...+...+.|++|++ ++|.+.+.. ...+...+.|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34566666666666542 2334445566777777 666666543 334445567777777777653
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.63 E-value=9e-09 Score=70.88 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=69.2
Q ss_pred ccccEEEecCCccCCCCCcCcCCcCcccEEEEeccc-ccccCCCCcCCC----CccceeeecCc-cccCCCchhccCCCc
Q 045504 113 KDILQLNCSSNFLTGPLPSEIGNLKVLVIIDFSMNN-FSGVIPTEIGGL----KNLEYLFLGYN-RLQGSIPNSFGDLIS 186 (229)
Q Consensus 113 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~-~~~~~~~~~~~~~~~ 186 (229)
..|+.++++++.+++..-..+..+++|++|++++|. +++.....+... ++|++|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665555556778889999998885 654433444443 47999999998 488777778888999
Q ss_pred CcEEecCCcc-ccCcc--chHh-hccCCCC
Q 045504 187 LKSLNLSNNN-LSGAI--PASL-EKLSYLE 212 (229)
Q Consensus 187 L~~L~l~~~~-~~~~~--~~~l-~~~~~L~ 212 (229)
|++|++++|. +++.. ...+ ..+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 9999999985 55532 2222 3456554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=7.8e-09 Score=72.54 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=57.6
Q ss_pred cccCCCCccEEecccc-ccCC----CCCccccCCCCccEEEccCccCCCCC----CccccCCCCCcEEEecCCcCCC---
Q 045504 37 TLGKLQKLQGLGLEDN-KLEG----SIPDNICRLTELYELELGGNKLSGSI----PACFNNLASLRILSLGSNELTS--- 104 (229)
Q Consensus 37 ~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~--- 104 (229)
.+...+.|++|++++| .++. .+...+...++|++|++++|.+.... ...+...++|+.|++++|.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344555666666655 4431 12223334455666666666554221 1223334556666666665552
Q ss_pred --cchhhcccccccEEEe--cCCccCCCC----CcCcCCcCcccEEEEeccccc
Q 045504 105 --IPLTFWNLKDILQLNC--SSNFLTGPL----PSEIGNLKVLVIIDFSMNNFS 150 (229)
Q Consensus 105 --~~~~~~~~~~L~~l~l--~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~ 150 (229)
+...+...+.|+.+++ .+|.+.+.. ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455556666666 555554321 123333456777777776654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=6.6e-07 Score=66.06 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=52.4
Q ss_pred CcCcccEEEEeccccccc--CCCCcCCCCccceeeecCccccCC-CchhccCCCcCcEEecCCccccCccc-------hH
Q 045504 135 NLKVLVIIDFSMNNFSGV--IPTEIGGLKNLEYLFLGYNRLQGS-IPNSFGDLISLKSLNLSNNNLSGAIP-------AS 204 (229)
Q Consensus 135 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~ 204 (229)
.+++|++|++++|.+.+. .+..+..+++|+.|+|++|.+++. ....+..+ +|++|++.+|.+.+..+ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 356788888888877753 344555677888888888877643 12223333 78888888888764322 34
Q ss_pred hhccCCCCeEE
Q 045504 205 LEKLSYLEDLN 215 (229)
Q Consensus 205 l~~~~~L~~L~ 215 (229)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.7e-06 Score=63.83 Aligned_cols=67 Identities=33% Similarity=0.346 Sum_probs=54.2
Q ss_pred CCCCccceeeecCccccC--CCchhccCCCcCcEEecCCccccCccchHhhccC--CCCeEEecCccCcCCCC
Q 045504 158 GGLKNLEYLFLGYNRLQG--SIPNSFGDLISLKSLNLSNNNLSGAIPASLEKLS--YLEDLNLSFNKLEGEIP 226 (229)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~p 226 (229)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..++ .|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457899999999999985 3345667899999999999999865 2344444 99999999999987666
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00052 Score=44.81 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=38.4
Q ss_pred EEEEeccccc-ccCCCCcCCCCccceeeecCccccCCCchhccCCCcCcEEecCCcccc
Q 045504 141 IIDFSMNNFS-GVIPTEIGGLKNLEYLFLGYNRLQGSIPNSFGDLISLKSLNLSNNNLS 198 (229)
Q Consensus 141 ~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (229)
.++.++++++ ...|..+ .+++++|+|++|.++...+..|..+++|++|+|++|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666676665 1333322 236888888888888666667788888888888887553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=8.7e-05 Score=52.01 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=55.4
Q ss_pred cCCCCccEEecccc-ccCC----CCCccccCCCCccEEEccCccCCCCCC----ccccCCCCCcEEEecCCcCC-----C
Q 045504 39 GKLQKLQGLGLEDN-KLEG----SIPDNICRLTELYELELGGNKLSGSIP----ACFNNLASLRILSLGSNELT-----S 104 (229)
Q Consensus 39 ~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~-----~ 104 (229)
..-+.|++|+++++ .+.. .+..++..-..|++|++.+|.+.+... ..+..-..|+.|+++.|.++ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666654 4431 122334444566666666666653222 22334456666666666665 2
Q ss_pred cchhhcccccccEEEecCCcc---CCC----CCcCcCCcCcccEEEEeccc
Q 045504 105 IPLTFWNLKDILQLNCSSNFL---TGP----LPSEIGNLKVLVIIDFSMNN 148 (229)
Q Consensus 105 ~~~~~~~~~~L~~l~l~~~~~---~~~----~~~~~~~~~~l~~l~l~~~~ 148 (229)
+...+..-..|+.|.++++.. .+. ....+..-+.|..|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233444455666676654322 111 11223334567777776554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00011 Score=51.59 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=80.0
Q ss_pred hhcccccccEEEecCC-ccCCC----CCcCcCCcCcccEEEEecccccccCCCC----cCCCCccceeeecCccccCCCc
Q 045504 108 TFWNLKDILQLNCSSN-FLTGP----LPSEIGNLKVLVIIDFSMNNFSGVIPTE----IGGLKNLEYLFLGYNRLQGSIP 178 (229)
Q Consensus 108 ~~~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~ 178 (229)
.+..-+.|+.|++.++ .+.+. ..+.+..-+.|+.|++++|.+....... +..-+.|++|+|++|.|++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999875 66532 2234455678999999999987543333 3455789999999999986433
Q ss_pred ----hhccCCCcCcEEecCCc---cccCc----cchHhhccCCCCeEEecCccC
Q 045504 179 ----NSFGDLISLKSLNLSNN---NLSGA----IPASLEKLSYLEDLNLSFNKL 221 (229)
Q Consensus 179 ----~~~~~~~~L~~L~l~~~---~~~~~----~~~~l~~~~~L~~L~l~~n~~ 221 (229)
.++.....|++|+++++ .+.+. +...+..-+.|++|+++.|..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34455578999999865 44443 445667778999999987653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0035 Score=40.82 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=38.2
Q ss_pred EEEccCcccC-CCCcccccCCCCccEEeccccccCCCCCccccCCCCccEEEccCccCC
Q 045504 22 TIFFGGNKLN-GSIPITLGKLQKLQGLGLEDNKLEGSIPDNICRLTELYELELGGNKLS 79 (229)
Q Consensus 22 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 79 (229)
.++.++..++ ..+|..+ -.+|++|+|++|+++.+.+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666654 1334322 236888888888888666667778888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.58 E-value=0.13 Score=31.57 Aligned_cols=49 Identities=16% Similarity=-0.046 Sum_probs=34.5
Q ss_pred CCCCCCCCCCccccCCCCccEEEccCcccCCCCcccccCCCCccEEeccc
Q 045504 2 SNCNVSGGIPEEITNLTNLTTIFFGGNKLNGSIPITLGKLQKLQGLGLED 51 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 51 (229)
.|.+++..-..+|.+|.+|+.+.|-.+. +.....+|.+|.+|+.+.+..
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3556666667778888888888887653 335566777778888777765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.13 E-value=0.65 Score=28.40 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=27.1
Q ss_pred cCCCCCcCcCCcCcccEEEEecccccccCCCCcCCCCccceeeecCc
Q 045504 125 LTGPLPSEIGNLKVLVIIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 171 (229)
Q Consensus 125 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (229)
++......|.+|.+|+.+.+..+ ++.+...+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33344456666666776666553 33355566666667776666553
Done!