BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045506
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O65607|MSH3_ARATH DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana GN=MSH3
           PE=1 SV=2
          Length = 1081

 Score = 37.4 bits (85), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 20  RKLTSLYQPSPIAMTYHKGALLEGNLPV-SILWYGEFSPAQKSIIADFLLSLNPQKNQLG 78
           + ++  + P P + T+    + E + P   I     FSP+++ +++D L + +P+K +L 
Sbjct: 7   QTISRFFAPKPKSPTHEPNPVAESSTPPPKISATVSFSPSKRKLLSDHLAAASPKKPKLS 66

Query: 79  SHFTTPQPSVSKRWHTIQTYMKKA 102
            H   P P  +     +Q +++ +
Sbjct: 67  PHTQNPVPDPNLHQRFLQRFLEPS 90


>sp|P27051|GUB_BACLI Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1
          Length = 243

 Score = 31.2 bits (69), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 53  GEFSPAQKSIIADFLLSLNPQKNQ--LGSHFTTPQPSVSKRWHTIQTYMKKAGKGQTRVF 110
           GE    Q      + +++ P KN   + S FT   P+    W  I   ++  GK  T+V 
Sbjct: 91  GENRSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTPWDEID--IEFLGKDTTKV- 147

Query: 111 IASQFSDKNCSLGKILKKAQGFCMSNCGFHGSNPQHNSAFIWVGNSV 157
              QF+     +G   K      + N GF  +N  H  AF W  NS+
Sbjct: 148 ---QFNYYTNGVGNHEK------IVNLGFDAANSYHTYAFDWQPNSI 185


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,566,510
Number of Sequences: 539616
Number of extensions: 2619580
Number of successful extensions: 4887
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4886
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)