Query 045506
Match_columns 173
No_of_seqs 105 out of 169
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b5b_A Defensin; antibiotic; N 47.3 6.9 0.00023 23.8 1.1 10 157-166 1-10 (36)
2 1u9d_A Hypothetical protein VC 34.4 38 0.0013 25.5 3.7 32 33-68 59-90 (122)
3 2d0s_A Cytochrome C, cytochrom 31.2 23 0.00078 22.5 1.8 18 53-70 61-78 (79)
4 2hgo_A CASSIICOLIN; toxin, dis 28.3 16 0.00055 21.0 0.5 9 130-138 11-19 (27)
5 3ph2_B Cytochrome C6; photosyn 28.1 22 0.00075 22.6 1.2 20 53-72 64-83 (86)
6 1w2l_A Cytochrome oxidase subu 26.6 36 0.0012 22.2 2.1 19 53-71 81-99 (99)
7 1ans_A Neurotoxin III; NMR {An 26.3 24 0.00082 20.4 1.0 9 159-167 10-19 (27)
8 1cno_A Cytochrome C552; electr 26.1 42 0.0015 21.7 2.4 20 53-72 65-84 (87)
9 1a56_A C-551, ferricytochrome 26.0 32 0.0011 21.9 1.8 18 53-70 63-80 (81)
10 3k2a_A Homeobox protein MEIS2; 25.1 35 0.0012 22.3 1.9 18 52-69 2-19 (67)
11 2w9k_A Cytochrome C, cytochrom 24.0 41 0.0014 23.0 2.1 21 51-71 93-113 (114)
12 1wve_C 4-cresol dehydrogenase 23.3 50 0.0017 21.3 2.3 20 53-72 56-75 (80)
13 1c6r_A Cytochrome C6; electron 22.9 42 0.0015 21.4 1.9 20 53-72 66-85 (89)
14 1c53_A Cytochrome C553; electr 22.9 41 0.0014 21.4 1.8 18 53-70 62-79 (79)
15 1c75_A Cytochrome C-553; heme, 22.8 52 0.0018 20.5 2.3 18 53-70 53-70 (71)
16 3dmi_A Cytochrome C6; electron 22.1 33 0.0011 21.9 1.2 20 53-72 65-84 (88)
17 2zxy_A Cytochrome C552, cytoch 21.7 49 0.0017 20.8 2.0 18 53-70 69-86 (87)
18 1cyi_A Cytochrome C6, cytochro 21.6 47 0.0016 21.3 1.9 20 53-72 65-84 (90)
19 1cch_A Cytochrome C551; electr 21.3 54 0.0018 20.6 2.1 17 54-70 65-81 (82)
20 1gdv_A Cytochrome C6; RED ALGA 20.9 50 0.0017 20.7 1.9 20 53-72 63-82 (85)
21 1f1f_A Cytochrome C6; heme, pr 20.2 52 0.0018 20.9 1.9 20 53-72 67-86 (89)
No 1
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=47.27 E-value=6.9 Score=23.82 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=8.0
Q ss_pred CCCCCCCCCC
Q 045506 157 VTPCPGQCAW 166 (173)
Q Consensus 157 ~~qCPG~CAw 166 (173)
|+.|||+|.-
T Consensus 1 ekkcpgrctl 10 (36)
T 2b5b_A 1 EKKCPGRCTL 10 (36)
T ss_dssp CCCCSSCSSS
T ss_pred CCCCCcceeE
Confidence 5789999964
No 2
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=34.43 E-value=38 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=22.8
Q ss_pred eeecCCcceecceeEEEEEeecCChhhHhHHHHHHH
Q 045506 33 MTYHKGALLEGNLPVSILWYGEFSPAQKSIIADFLL 68 (173)
Q Consensus 33 l~YH~GplLtg~i~V~lIwYG~ftp~QksiI~DFl~ 68 (173)
--|++| .+---|++-|.|| ++.||..+...|.
T Consensus 59 ~~i~~G---~~MP~VeV~~fgR-t~EqK~~la~~IT 90 (122)
T 1u9d_A 59 QYFAEG---GVYPMVEVLWFGR-EQQTQDQIAQVIT 90 (122)
T ss_dssp CCCCTT---CCCCEEEEEESCC-CHHHHHHHHHHHH
T ss_pred EEEecC---CCCCEEEEEEcCC-CHHHHHHHHHHHH
Confidence 456888 5555788999997 8888875555443
No 3
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=31.21 E-value=23 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=16.7
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
+..|+.|.+.|.+||.+|
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 788999999999999987
No 4
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.28 E-value=16 Score=20.99 Aligned_cols=9 Identities=67% Similarity=1.652 Sum_probs=8.1
Q ss_pred CCccccccc
Q 045506 130 QGFCMSNCG 138 (173)
Q Consensus 130 ~gFC~s~CG 138 (173)
.|||.+.||
T Consensus 11 ngfcgdncg 19 (27)
T 2hgo_A 11 NGFCGDNCG 19 (27)
T ss_dssp TTEEECSSS
T ss_pred CccccCCcC
Confidence 499999998
No 5
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=28.14 E-value=22 Score=22.59 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.3
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..++.|..-|.+||.+++.
T Consensus 64 ~~ls~~ei~~l~~yl~~~~~ 83 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQAE 83 (86)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhh
Confidence 57899999999999999864
No 6
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=26.55 E-value=36 Score=22.22 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=16.7
Q ss_pred ecCChhhHhHHHHHHHhcC
Q 045506 53 GEFSPAQKSIIADFLLSLN 71 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs 71 (173)
+..++.|..-|.+||++|.
T Consensus 81 ~~ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp GGCCHHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHHHHHHcC
Confidence 5689999999999999884
No 7
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=26.33 E-value=24 Score=20.38 Aligned_cols=9 Identities=56% Similarity=1.376 Sum_probs=6.0
Q ss_pred CCC-CCCCCC
Q 045506 159 PCP-GQCAWP 167 (173)
Q Consensus 159 qCP-G~CAwP 167 (173)
-|| |||++|
T Consensus 10 gCpWGQ~~~~ 19 (27)
T 1ans_A 10 GCPWGQNCYP 19 (27)
T ss_dssp TCSSSCSSCS
T ss_pred CCcccccccc
Confidence 356 777776
No 8
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=26.15 E-value=42 Score=21.69 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.8
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+.+++.|..-|.+||++|..
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPA 84 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCT
T ss_pred hhCCHHHHHHHHHHHHhCCc
Confidence 56899999999999999965
No 9
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=26.03 E-value=32 Score=21.92 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=16.8
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
+..++.|.+.|.+||++|
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 788999999999999987
No 10
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=25.14 E-value=35 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=12.8
Q ss_pred eecCChhhHhHHHHHHHh
Q 045506 52 YGEFSPAQKSIIADFLLS 69 (173)
Q Consensus 52 YG~ftp~QksiI~DFl~S 69 (173)
.|+|++.|+.++.+++..
T Consensus 2 ~g~f~~~~~~~L~~~f~~ 19 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQ 19 (67)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 489999999999999874
No 11
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=23.99 E-value=41 Score=23.03 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.3
Q ss_pred EeecCChhhHhHHHHHHHhcC
Q 045506 51 WYGEFSPAQKSIIADFLLSLN 71 (173)
Q Consensus 51 wYG~ftp~QksiI~DFl~SLs 71 (173)
|.|..++.|..-|.+||++|.
T Consensus 93 ~~~~ls~~ei~~l~aYl~sl~ 113 (114)
T 2w9k_A 93 FAGMKKPQERADVIAYLETLK 113 (114)
T ss_dssp CCCCCCHHHHHHHHHHHHTCC
T ss_pred ccccCCHHHHHHHHHHHHHcc
Confidence 557789999999999999985
No 12
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=23.30 E-value=50 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.6
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
...++.|...|.+||.++..
T Consensus 56 ~~ls~~ei~~l~~yl~~~~~ 75 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLPA 75 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHCcC
Confidence 46899999999999999975
No 13
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=22.93 E-value=42 Score=21.44 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=17.7
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..++.|..-|.+||+++..
T Consensus 66 ~~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcc
Confidence 46899999999999999864
No 14
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=22.91 E-value=41 Score=21.42 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.8
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
+..++.|...|.+||++|
T Consensus 62 ~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSKL 79 (79)
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 568999999999999886
No 15
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=22.82 E-value=52 Score=20.45 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=16.3
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
+..++.|..-|.+||.++
T Consensus 53 ~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp CSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 678999999999999887
No 16
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=22.08 E-value=33 Score=21.89 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.4
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..|+.|..-|.+||++++.
T Consensus 65 ~~ls~~ei~~l~~yl~~~~~ 84 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLASAE 84 (88)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999865
No 17
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=21.67 E-value=49 Score=20.81 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=16.2
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
...++.|..-|.+||++|
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 568999999999999987
No 18
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=21.58 E-value=47 Score=21.34 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=17.9
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..++.|..-|.+||+++..
T Consensus 65 ~~ls~~ei~~l~~yl~~~~~ 84 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFKQAT 84 (90)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 47899999999999999965
No 19
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=21.28 E-value=54 Score=20.57 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=16.0
Q ss_pred cCChhhHhHHHHHHHhc
Q 045506 54 EFSPAQKSIIADFLLSL 70 (173)
Q Consensus 54 ~ftp~QksiI~DFl~SL 70 (173)
..++.|..-|.+||.+|
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 78999999999999987
No 20
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=20.89 E-value=50 Score=20.73 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.5
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..|+.|...|.+||.++..
T Consensus 63 ~~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 63 GRLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 37899999999999999854
No 21
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.23 E-value=52 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.5
Q ss_pred ecCChhhHhHHHHHHHhcCc
Q 045506 53 GEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs~ 72 (173)
+..++.|..-|.+||.++..
T Consensus 67 ~~ls~~ei~~l~~yl~~~~~ 86 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVDQAE 86 (89)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhh
Confidence 46899999999999999854
Done!