Query 045506
Match_columns 173
No_of_seqs 105 out of 169
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5e2 f.23.12.1 (E:31-86) Ir 44.9 4.8 0.00035 25.5 1.7 15 58-72 40-54 (56)
2 d2c8sa1 a.3.1.1 (A:24-172) Cyt 34.7 9 0.00066 26.8 2.1 22 51-72 89-110 (149)
3 d1nmla2 a.3.1.5 (A:167-326) Di 34.6 16 0.0012 26.2 3.6 18 55-72 118-135 (160)
4 d1eb7a2 a.3.1.5 (A:165-323) Di 34.6 19 0.0014 25.8 3.9 19 54-72 119-137 (159)
5 d1ynra1 a.3.1.1 (A:1-80) Cytoc 33.5 11 0.0008 23.3 2.1 19 52-70 61-79 (80)
6 d1wvec1 a.3.1.1 (C:602-675) p- 33.2 11 0.00082 23.3 2.2 19 53-71 55-73 (74)
7 d1c53a_ a.3.1.1 (A:) Cytochrom 31.8 9 0.00066 23.3 1.5 20 51-70 60-79 (79)
8 d1a56a_ a.3.1.1 (A:) Cytochrom 30.9 12 0.00085 23.2 2.0 19 52-70 62-80 (81)
9 d351ca_ a.3.1.1 (A:) Cytochrom 27.1 16 0.0012 22.4 2.2 17 54-70 65-81 (82)
10 d1ppje2 f.23.12.1 (E:1-69) Iro 26.1 15 0.0011 23.9 1.7 15 58-72 50-64 (69)
11 d1lfma_ a.3.1.1 (A:) Mitochond 25.6 17 0.0012 22.6 2.0 22 51-72 82-103 (103)
12 d1iqca2 a.3.1.5 (A:151-308) Di 25.4 25 0.0018 25.1 3.2 19 54-72 116-134 (158)
13 d1cc5a_ a.3.1.1 (A:) Cytochrom 25.2 17 0.0013 22.4 2.0 18 53-70 66-83 (83)
14 d1cora_ a.3.1.1 (A:) Cytochrom 23.4 20 0.0015 21.9 2.1 17 54-70 65-81 (82)
15 d1l6ja3 g.14.1.2 (A:216-274) G 22.0 12 0.00086 23.5 0.6 15 152-169 6-20 (59)
16 d1h1oa1 a.3.1.4 (A:12-93) Cyto 20.9 38 0.0028 20.4 3.0 21 52-72 57-77 (82)
17 d1l6ja5 g.14.1.2 (A:332-390) G 20.8 13 0.00094 23.3 0.6 14 153-169 8-21 (59)
No 1
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.88 E-value=4.8 Score=25.46 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.3
Q ss_pred hhHhHHHHHHHhcCc
Q 045506 58 AQKSIIADFLLSLNP 72 (173)
Q Consensus 58 ~QksiI~DFl~SLs~ 72 (173)
.-|++|.|||.++++
T Consensus 40 ~AKstV~~FlssMSA 54 (56)
T d3cx5e2 40 GAKSTVETFISSMTA 54 (56)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhccc
Confidence 468999999999986
No 2
>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}
Probab=34.66 E-value=9 Score=26.84 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=19.9
Q ss_pred EeecCChhhHhHHHHHHHhcCc
Q 045506 51 WYGEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 51 wYG~ftp~QksiI~DFl~SLs~ 72 (173)
|.+++++.|...|.+||++|..
T Consensus 89 ~~~~Lsdeei~~ivaYvr~l~~ 110 (149)
T d2c8sa1 89 HNENLTPDEMLQTIAWIRHLYT 110 (149)
T ss_dssp CCCCSCHHHHHHHHHHHHHTCC
T ss_pred cccCCCHHHHHHHHHHHHHhcc
Confidence 6678999999999999999975
No 3
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=34.59 E-value=16 Score=26.22 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=17.0
Q ss_pred CChhhHhHHHHHHHhcCc
Q 045506 55 FSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 55 ftp~QksiI~DFl~SLs~ 72 (173)
.++.|++-|+.||+||+.
T Consensus 118 Lt~~e~~~LvaFL~tLtd 135 (160)
T d1nmla2 118 LNNDEVKSIVAFLKTLTG 135 (160)
T ss_dssp CCHHHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 889999999999999986
No 4
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.59 E-value=19 Score=25.81 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.3
Q ss_pred cCChhhHhHHHHHHHhcCc
Q 045506 54 EFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 54 ~ftp~QksiI~DFl~SLs~ 72 (173)
+.++.|++-|+.||+||+.
T Consensus 119 ~Ls~~e~~~LvaFL~sLt~ 137 (159)
T d1eb7a2 119 QLAPDDVENIVAFLHSLSG 137 (159)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4789999999999999986
No 5
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=33.51 E-value=11 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.0
Q ss_pred eecCChhhHhHHHHHHHhc
Q 045506 52 YGEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 52 YG~ftp~QksiI~DFl~SL 70 (173)
-+++|+.|...|++||+||
T Consensus 61 ~~~lsd~ei~~l~~yi~sL 79 (80)
T d1ynra1 61 PQNVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCSCCHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHHc
Confidence 4478999999999999998
No 6
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=33.22 E-value=11 Score=23.32 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.8
Q ss_pred ecCChhhHhHHHHHHHhcC
Q 045506 53 GEFSPAQKSIIADFLLSLN 71 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SLs 71 (173)
+.+++.|...|.+||+||.
T Consensus 55 ~~lsd~ei~~l~~Yi~slp 73 (74)
T d1wvec1 55 SYVDDESLTQVAEYLSSLP 73 (74)
T ss_dssp TTSCHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhCC
Confidence 4589999999999999984
No 7
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=31.84 E-value=9 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.4
Q ss_pred EeecCChhhHhHHHHHHHhc
Q 045506 51 WYGEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 51 wYG~ftp~QksiI~DFl~SL 70 (173)
|-++.|+.|..-|.+||.||
T Consensus 60 ~~~~Lsd~ei~~l~aYi~sL 79 (79)
T d1c53a_ 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 45779999999999999987
No 8
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}
Probab=30.94 E-value=12 Score=23.16 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.4
Q ss_pred eecCChhhHhHHHHHHHhc
Q 045506 52 YGEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 52 YG~ftp~QksiI~DFl~SL 70 (173)
|++.++.|..-|.+||+||
T Consensus 62 ~~~Lsd~ei~~l~~Yl~sl 80 (81)
T d1a56a_ 62 NVNVSDADAKALADWILTL 80 (81)
T ss_dssp CCSSSSHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHc
Confidence 4779999999999999998
No 9
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.11 E-value=16 Score=22.41 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=15.8
Q ss_pred cCChhhHhHHHHHHHhc
Q 045506 54 EFSPAQKSIIADFLLSL 70 (173)
Q Consensus 54 ~ftp~QksiI~DFl~SL 70 (173)
++|+.|...|.+||+||
T Consensus 65 ~lsd~ei~~la~Yi~Sl 81 (82)
T d351ca_ 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp SCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 48999999999999998
No 10
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.10 E-value=15 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=13.4
Q ss_pred hhHhHHHHHHHhcCc
Q 045506 58 AQKSIIADFLLSLNP 72 (173)
Q Consensus 58 ~QksiI~DFl~SLs~ 72 (173)
.-|++|.+||.++++
T Consensus 50 ~AK~~V~~fvssmSa 64 (69)
T d1ppje2 50 AAKNVVSQFVSSMSA 64 (69)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCc
Confidence 468999999999987
No 11
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=25.61 E-value=17 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=17.9
Q ss_pred EeecCChhhHhHHHHHHHhcCc
Q 045506 51 WYGEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 51 wYG~ftp~QksiI~DFl~SLs~ 72 (173)
++|--++.|+.-|..||+|||+
T Consensus 82 ~~~~ls~~ei~dviAYLkt~s~ 103 (103)
T d1lfma_ 82 FAGIKKKGERQDLVAYLKSATS 103 (103)
T ss_dssp CCCCCSHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHhcC
Confidence 4555678899999999999974
No 12
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=25.37 E-value=25 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=17.3
Q ss_pred cCChhhHhHHHHHHHhcCc
Q 045506 54 EFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 54 ~ftp~QksiI~DFl~SLs~ 72 (173)
+.++.|++-|+.||+||+.
T Consensus 116 ~Ls~~E~~~LvaFL~sLt~ 134 (158)
T d1iqca2 116 EFNKDEVSKIVAFLKTLTG 134 (158)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4788999999999999986
No 13
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=25.21 E-value=17 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=16.1
Q ss_pred ecCChhhHhHHHHHHHhc
Q 045506 53 GEFSPAQKSIIADFLLSL 70 (173)
Q Consensus 53 G~ftp~QksiI~DFl~SL 70 (173)
++.|+.|-+-|.+||.+|
T Consensus 66 ~~Lsd~ei~~vv~Yi~~L 83 (83)
T d1cc5a_ 66 ADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSCCHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHhhC
Confidence 468999999999999987
No 14
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=23.42 E-value=20 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.9
Q ss_pred cCChhhHhHHHHHHHhc
Q 045506 54 EFSPAQKSIIADFLLSL 70 (173)
Q Consensus 54 ~ftp~QksiI~DFl~SL 70 (173)
.+|+.|..-|.+||+||
T Consensus 65 ~lsdeei~~la~Yi~Sl 81 (82)
T d1cora_ 65 PVTEEEAKILAEWILSQ 81 (82)
T ss_dssp SCCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 48999999999999998
No 15
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.05 E-value=12 Score=23.51 Aligned_cols=15 Identities=33% Similarity=0.745 Sum_probs=10.8
Q ss_pred EecCCCCCCCCCCCCCCC
Q 045506 152 WVGNSVTPCPGQCAWPFH 169 (173)
Q Consensus 152 WVGNs~~qCPG~CAwPFh 169 (173)
--||+..++ |.+||-
T Consensus 6 ~~Gns~G~~---C~FPF~ 20 (59)
T d1l6ja3 6 RFGNADGAA---CHFPFI 20 (59)
T ss_dssp BSSSSTTCB---CCSSEE
T ss_pred ecCcCCCCc---eECCEE
Confidence 348887554 999994
No 16
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=20.93 E-value=38 Score=20.42 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.5
Q ss_pred eecCChhhHhHHHHHHHhcCc
Q 045506 52 YGEFSPAQKSIIADFLLSLNP 72 (173)
Q Consensus 52 YG~ftp~QksiI~DFl~SLs~ 72 (173)
-.++|+.|..-|.+||.||.+
T Consensus 57 ~~~LSd~eI~~la~Yi~sl~p 77 (82)
T d1h1oa1 57 AQALDSAKITALADYFNAQKP 77 (82)
T ss_dssp HHTCCHHHHHHHHHHHHHCSS
T ss_pred HhhCCHHHHHHHHHHHHhCCC
Confidence 357899999999999999965
No 17
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.83 E-value=13 Score=23.31 Aligned_cols=14 Identities=43% Similarity=0.852 Sum_probs=9.7
Q ss_pred ecCCCCCCCCCCCCCCC
Q 045506 153 VGNSVTPCPGQCAWPFH 169 (173)
Q Consensus 153 VGNs~~qCPG~CAwPFh 169 (173)
-||+..+| |.+||-
T Consensus 8 GGns~G~~---C~FPF~ 21 (59)
T d1l6ja5 8 GGNSAGEL---CVFPFT 21 (59)
T ss_dssp STTTTTCB---CCSSEE
T ss_pred cCCCCCCc---cCCCEE
Confidence 47876443 999983
Done!