BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045507
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 470 IPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILCLHQYMLGDI--AIIGKLKNL 526
+P F ++ LK++ + L SLP + D L NL L L+ L + + KL NL
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 527 EILSIWGPDIKTLPEEL-GQLTKLRQLDLVNCFQLKVI 563
L + +++LPE + +LT+L+QL L N QLK +
Sbjct: 160 TRLDLDNNQLQSLPEGVFDKLTQLKQLSL-NDNQLKSV 196
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 498 IDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEEL-GQLTKLRQLDLV 555
I L N++ L L L DI+ + +L NL L + G +++LP + +LT L++L LV
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 427 DALKQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDV 484
D L + + L N+ + LP G+ LD L + ++P F R+ KLK++
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKEL 136
Query: 485 DMARMWLFSLPS-SIDLLVNLQILCLHQYMLGDI--AIIGKLKNLEILSIWG 533
+ L S+P+ + D L NLQ L L L + +L L+ ++++G
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 427 DALKQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDV 484
D L + + L N+ + LP G+ LD L + ++P F R+ KLK++
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKEL 136
Query: 485 DMARMWLFSLPS-SIDLLVNLQILCLHQYMLGDI--AIIGKLKNLEILSIWG 533
+ L S+P+ + D L NLQ L L L + +L L+ ++++G
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 63/241 (26%)
Query: 155 FESRLSTLKAIQNALSDLN--VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKII 212
F +R + AIQ L LN + +YGM G GK+ L E R E + + +
Sbjct: 133 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 192
Query: 213 QGDIAEKLGLVS-----CEKVETRRA-------------NRL-YERLKREKKILIVLDNI 253
+K GL+ C +++ + +RL L++ + L++LD++
Sbjct: 193 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 252
Query: 254 W--------------------KHVDLESIG----IP----FGDEHKGYDDVE---NLK-- 280
W K V +G +P G E KG + + N+K
Sbjct: 253 WDPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE-KGLEILSLFVNMKKE 311
Query: 281 -LKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALREL------RIRTPSVVNFEK 333
L + A + K C G P+ ++ IG +R+ W LR+L RIR S ++E
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEA 370
Query: 334 V 334
+
Sbjct: 371 L 371
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 63/241 (26%)
Query: 155 FESRLSTLKAIQNALSDLN--VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKII 212
F +R + AIQ L LN + +YGM G GK+ L E R E + + +
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185
Query: 213 QGDIAEKLGLVS-----CEKVETRRA-------------NRL-YERLKREKKILIVLDNI 253
+K GL+ C +++ + +RL L++ + L++LD++
Sbjct: 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
Query: 254 W--------------------KHVDLESIG----IP----FGDEHKGYDDVE---NLK-- 280
W K V +G +P G E KG + + N+K
Sbjct: 246 WDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE-KGLEILSLFVNMKKE 304
Query: 281 -LKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALREL------RIRTPSVVNFEK 333
L + A + K C G P+ ++ IG +R+ W LR+L RIR S ++E
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEA 363
Query: 334 V 334
+
Sbjct: 364 L 364
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 251
Query: 561 KVIAP 565
+AP
Sbjct: 252 SNLAP 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 251
Query: 561 KVIAP 565
+AP
Sbjct: 252 SNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 251
Query: 561 KVIAP 565
+AP
Sbjct: 252 SNLAP 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 250
Query: 561 KVIAP 565
+AP
Sbjct: 251 SNLAP 255
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 469 NIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILCLHQYMLGDI--AIIGKLKN 525
++P F ++ LK++ + L SLP + D L NL L L L + + KL N
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 526 LEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQ 559
L L + +++LPE G KL QL + +Q
Sbjct: 159 LTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQ 190
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 469 NIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILCLH 510
++PE F ++ +LKD+ + + L S+P + D L +LQ + LH
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 498 IDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEEL-GQLTKLRQLDLV 555
I L N++ L L L DI+ + +L NL L + G +++LP + +LT L++L LV
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 250
Query: 561 KVIAP 565
+AP
Sbjct: 251 SNLAP 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 197 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 254
Query: 561 KVIAP 565
+AP
Sbjct: 255 SNLAP 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 501 LVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQL 560
L NL+ L + DI +G L NL+ LS+ G +K + L LT L LDL N Q+
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QI 255
Query: 561 KVIAP 565
+AP
Sbjct: 256 SNLAP 260
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 63/239 (26%)
Query: 155 FESRLSTLKAIQNALSDLN--VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKII 212
F +R + AIQ LS L + ++GM G GK+ L E R E + +
Sbjct: 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 185
Query: 213 QGDIAEKLGLVS-----CEKVETRRA-------------NRL-YERLKREKKILIVLDNI 253
+K GL+ C +++ + +RL L++ + L++LD++
Sbjct: 186 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245
Query: 254 W--------------------KHVDLESIG----IP----FGDEHKG------YDDVENL 279
W K V +G +P G E KG + +++
Sbjct: 246 WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE-KGLEILSLFVNMKKA 304
Query: 280 KLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALREL------RIRTPSVVNFE 332
L A + K C G P+ ++ IG +R+ W+ L++L RIR S ++E
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSSYDYE 362
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 63/241 (26%)
Query: 155 FESRLSTLKAIQNALSDLN--VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKII 212
F +R + AIQ LS L + ++GM G GK+ L E R E + +
Sbjct: 132 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 191
Query: 213 QGDIAEKLGLVS-----CEKVETRRA-------------NRL-YERLKREKKILIVLDNI 253
+K GL+ C +++ + +RL L++ + L++LD++
Sbjct: 192 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 251
Query: 254 W--------------------KHVDLESIG----IP----FGDEHKG------YDDVENL 279
W K V +G +P G E KG + +++
Sbjct: 252 WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE-KGLEILSLFVNMKKA 310
Query: 280 KLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALREL------RIRTPSVVNFEK 333
L A + K C G P+ ++ IG +R+ W+ L++L RIR S ++E
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSSYDYEA 369
Query: 334 V 334
+
Sbjct: 370 L 370
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 501 LVNLQILCLHQYMLGDI-AIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQ 559
LVNLQ L L + + A I L+NL+ L I + L + L KL +LDL C
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 560 LKVIAP 565
L+ P
Sbjct: 242 LRNYPP 247
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 149 HKGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVARKV 198
H G E + R+ A+Q L I+ + G G+GKT+L K +A+ +
Sbjct: 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 169 LSDLNVSI-----IGVYGMGGIGKTTLVKEVARKVDFSE---VSQNPNIK-IIQGDIAEK 219
L D+N+SI + GM G GK+TL+ + R D + + NIK + G + +
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 220 LGLVSCEKV---ETRRANRLYER 239
+GLV + + +T + N L R
Sbjct: 417 IGLVQQDNILFSDTVKENILLGR 439
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 177 IGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRL 236
IG++G G+GKT L++E+ + ++ I + G + E+ TR N L
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNI----AQEHGGISVFAG-VGER----------TREGNDL 198
Query: 237 YERLK 241
Y +K
Sbjct: 199 YHEMK 203
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 470 IPEKFFSRI----KKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGDIAIIGKLKN 525
IP SR+ +L+D D S+ L NL+IL + L I ++G L
Sbjct: 103 IPSACLSRLFLDNNELRDTD-----------SLIHLKNLEILSIRNNKLKSIVMLGFLSK 151
Query: 526 LEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556
LE+L + G +I G LT+L++++ ++
Sbjct: 152 LEVLDLHGNEITN----TGGLTRLKKVNWID 178
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 168 ALSDLNVSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIK 210
LSD+N+ I G G GIGKTTL K ++V + + +K
Sbjct: 47 GLSDVNM-IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 88
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 141 PEEI---WLKPHKGYESFESRLSTLKA-IQNALSDLNVSIIGVY 180
PE I W+ PHKG+ FE+R +A ++ L+ L ++ +Y
Sbjct: 133 PEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNLNKLAQVLVALY 176
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 177 IGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRL 236
IG++G G+GKT L++E+ V ++ + + G + E+ TR N L
Sbjct: 147 IGLFGGAGVGKTVLIQELINNV----AQEHGGLSVFAG-VGER----------TREGNDL 191
Query: 237 YERLK 241
Y +K
Sbjct: 192 YHEMK 196
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 470 IPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILCLH 510
+P F ++ KLK +++A L S+P I D L +LQ + LH
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLH 226
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 469 NIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILCLH 510
++P+ F ++ +LKD+ + + L S+P + D L +LQ + LH
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 173 NVSIIGVYGMGGIGKTTLVKEVARKV--DFSEVSQNPNIKIIQGDIAEKL 220
N +I+GV G G+GKTT++K +A ++ +F + PN K+ + ++ ++
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGD----PNSKVGKDEVLKRF 69
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 515 GDIAIIG-KLKNLEILSIWGPDIKTLP--EELGQLTKLRQLDLVNC 557
GD+ ++ K NL+ L++ G IK L E L +L L+ LDL NC
Sbjct: 83 GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,215,457
Number of Sequences: 62578
Number of extensions: 607191
Number of successful extensions: 1684
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 62
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)