Query 045507
Match_columns 566
No_of_seqs 287 out of 3976
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.4E-64 1.2E-68 548.8 40.4 513 35-556 24-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-37 2.3E-42 359.7 29.6 388 150-565 181-699 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-29 3.9E-34 250.1 14.6 212 158-374 1-285 (287)
4 KOG0617 Ras suppressor protein 99.4 5.7E-15 1.2E-19 126.2 -3.1 138 424-566 50-191 (264)
5 KOG0617 Ras suppressor protein 99.3 2.1E-13 4.6E-18 116.6 -1.8 137 424-565 27-167 (264)
6 PLN00113 leucine-rich repeat r 99.1 3E-10 6.6E-15 131.6 10.9 126 429-557 139-270 (968)
7 KOG0472 Leucine-rich repeat pr 99.0 6.8E-11 1.5E-15 114.3 1.4 123 437-565 419-544 (565)
8 PLN00113 leucine-rich repeat r 99.0 1.6E-09 3.4E-14 125.8 10.8 128 428-557 91-246 (968)
9 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 97.7 5.8 125 428-557 17-150 (175)
10 KOG0444 Cytoskeletal regulator 98.9 6.2E-11 1.3E-15 120.4 -2.9 130 431-564 246-379 (1255)
11 KOG0444 Cytoskeletal regulator 98.9 1.6E-10 3.6E-15 117.4 -0.4 136 425-565 217-356 (1255)
12 PLN03210 Resistant to P. syrin 98.9 3.8E-09 8.3E-14 123.3 10.6 131 429-565 588-722 (1153)
13 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5E-15 106.6 -1.1 133 427-565 281-416 (490)
14 KOG0472 Leucine-rich repeat pr 98.8 1.6E-10 3.4E-15 111.9 -3.9 122 429-556 182-306 (565)
15 PRK15370 E3 ubiquitin-protein 98.8 3.6E-08 7.8E-13 108.2 11.5 118 413-542 183-301 (754)
16 TIGR03015 pepcterm_ATPase puta 98.7 1.5E-06 3.4E-11 85.0 18.5 87 171-257 40-136 (269)
17 PRK15387 E3 ubiquitin-protein 98.6 3.5E-07 7.6E-12 100.1 13.9 96 412-516 205-316 (788)
18 KOG4194 Membrane glycoprotein 98.6 6.6E-09 1.4E-13 105.3 0.5 131 429-563 292-431 (873)
19 PF14580 LRR_9: Leucine-rich r 98.6 4.2E-08 9.1E-13 87.9 4.7 114 440-558 7-124 (175)
20 PLN03150 hypothetical protein; 98.6 1.5E-07 3.2E-12 102.7 9.2 109 453-564 419-532 (623)
21 PRK15370 E3 ubiquitin-protein 98.6 2.3E-07 4.9E-12 102.0 10.5 121 431-565 179-300 (754)
22 KOG0618 Serine/threonine phosp 98.5 2.5E-08 5.3E-13 106.5 1.0 126 429-559 358-488 (1081)
23 KOG4194 Membrane glycoprotein 98.5 9.6E-08 2.1E-12 97.1 5.1 130 428-561 100-234 (873)
24 KOG0532 Leucine-rich repeat (L 98.5 1.7E-08 3.8E-13 102.1 -0.3 132 427-564 118-250 (722)
25 PRK00411 cdc6 cell division co 98.5 1.4E-06 3E-11 90.4 13.1 105 152-256 29-150 (394)
26 TIGR02928 orc1/cdc6 family rep 98.4 2.3E-06 4.9E-11 87.8 13.3 104 153-256 15-141 (365)
27 PF13401 AAA_22: AAA domain; P 98.4 1.2E-06 2.7E-11 75.4 9.3 84 173-256 3-99 (131)
28 PRK15387 E3 ubiquitin-protein 98.4 4.6E-07 1E-11 99.2 7.9 117 429-561 341-458 (788)
29 KOG0532 Leucine-rich repeat (L 98.4 6.8E-09 1.5E-13 105.0 -5.7 109 450-565 119-228 (722)
30 KOG4658 Apoptotic ATPase [Sign 98.4 2.1E-07 4.5E-12 103.9 4.9 128 427-557 542-678 (889)
31 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6.2E-12 67.6 3.8 55 480-534 2-59 (61)
32 KOG0618 Serine/threonine phosp 98.4 7.6E-08 1.7E-12 102.9 0.9 92 472-564 38-130 (1081)
33 PLN03150 hypothetical protein; 98.3 7.2E-07 1.6E-11 97.3 7.3 86 480-565 419-508 (623)
34 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 65.9 3.0 56 502-557 1-59 (61)
35 PTZ00202 tuzin; Provisional 98.2 2.1E-05 4.6E-10 78.9 13.9 101 149-250 258-367 (550)
36 PF13191 AAA_16: AAA ATPase do 98.2 1E-05 2.2E-10 74.2 9.7 42 155-196 2-46 (185)
37 PF01637 Arch_ATPase: Archaeal 98.2 5.1E-06 1.1E-10 79.2 7.8 42 155-196 1-42 (234)
38 cd01128 rho_factor Transcripti 98.2 6.3E-06 1.4E-10 78.6 8.2 85 172-256 14-115 (249)
39 KOG3665 ZYG-1-like serine/thre 98.2 1.2E-06 2.6E-11 95.5 3.6 128 429-560 121-262 (699)
40 cd00009 AAA The AAA+ (ATPases 98.1 2.1E-05 4.5E-10 68.8 10.1 40 157-196 2-41 (151)
41 PRK00080 ruvB Holliday junctio 98.0 0.00048 1E-08 69.4 19.2 46 151-196 23-73 (328)
42 KOG1259 Nischarin, modulator o 98.0 1.8E-06 3.9E-11 81.1 1.4 106 450-562 282-388 (490)
43 COG4886 Leucine-rich repeat (L 98.0 3.9E-06 8.4E-11 87.1 4.0 125 427-556 160-286 (394)
44 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 55.7 3.5 37 480-516 2-38 (44)
45 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 55.9 3.2 37 503-539 2-39 (44)
46 COG1474 CDC6 Cdc6-related prot 98.0 7.9E-05 1.7E-09 75.4 13.0 102 155-256 19-135 (366)
47 cd00116 LRR_RI Leucine-rich re 98.0 3.7E-06 8.1E-11 84.4 3.5 126 431-557 109-260 (319)
48 PF05729 NACHT: NACHT domain 98.0 2E-05 4.3E-10 70.8 7.2 77 175-256 1-93 (166)
49 COG4886 Leucine-rich repeat (L 98.0 6.4E-06 1.4E-10 85.4 4.4 129 431-564 141-271 (394)
50 PRK09376 rho transcription ter 97.9 2.7E-05 5.8E-10 77.7 8.1 92 165-256 159-268 (416)
51 PRK15386 type III secretion pr 97.9 2.7E-05 5.8E-10 78.5 8.0 112 431-557 53-187 (426)
52 PRK04841 transcriptional regul 97.9 0.0001 2.2E-09 85.2 14.0 102 152-256 13-133 (903)
53 TIGR00635 ruvB Holliday juncti 97.9 0.00017 3.7E-09 71.9 12.9 44 153-196 4-52 (305)
54 KOG4237 Extracellular matrix p 97.9 2.1E-06 4.5E-11 83.8 -1.1 106 455-564 70-180 (498)
55 PTZ00112 origin recognition co 97.8 0.0002 4.3E-09 77.8 12.8 104 153-256 755-881 (1164)
56 PRK13342 recombination factor 97.8 3.8E-05 8.3E-10 79.8 7.2 54 152-205 11-69 (413)
57 cd00116 LRR_RI Leucine-rich re 97.8 2E-05 4.4E-10 79.1 4.8 129 429-558 80-232 (319)
58 TIGR00767 rho transcription te 97.7 0.00012 2.6E-09 73.5 8.6 85 172-256 166-267 (415)
59 KOG4237 Extracellular matrix p 97.7 1E-05 2.3E-10 79.0 0.2 138 417-558 55-199 (498)
60 KOG3207 Beta-tubulin folding c 97.7 1.2E-05 2.5E-10 79.7 0.3 126 428-556 195-335 (505)
61 COG2256 MGS1 ATPase related to 97.6 0.00021 4.6E-09 70.6 8.9 87 153-255 24-115 (436)
62 KOG3207 Beta-tubulin folding c 97.6 2.1E-05 4.5E-10 78.0 1.9 133 429-564 171-317 (505)
63 KOG2543 Origin recognition com 97.6 0.00046 1E-08 67.7 10.7 109 152-260 5-131 (438)
64 PF05496 RuvB_N: Holliday junc 97.5 0.00044 9.5E-09 63.8 8.7 47 150-196 21-72 (233)
65 KOG3665 ZYG-1-like serine/thre 97.5 4.9E-05 1.1E-09 83.0 2.8 105 451-556 121-229 (699)
66 PRK04195 replication factor C 97.5 0.00033 7.2E-09 74.3 8.7 46 151-196 12-61 (482)
67 KOG2028 ATPase related to the 97.4 0.0006 1.3E-08 66.3 8.1 74 166-254 154-232 (554)
68 KOG4579 Leucine-rich repeat (L 97.4 3.7E-05 8.1E-10 64.2 -0.0 91 450-543 51-142 (177)
69 PRK11331 5-methylcytosine-spec 97.4 0.00065 1.4E-08 69.5 8.8 100 153-256 175-284 (459)
70 PF05621 TniB: Bacterial TniB 97.3 0.0024 5.3E-08 61.7 11.6 97 159-255 43-156 (302)
71 KOG0531 Protein phosphatase 1, 97.3 5.9E-05 1.3E-09 78.6 0.4 80 476-556 115-195 (414)
72 PRK15386 type III secretion pr 97.3 0.00026 5.7E-09 71.5 4.5 80 450-544 50-135 (426)
73 KOG1859 Leucine-rich repeat pr 97.3 6.7E-06 1.5E-10 86.1 -7.1 128 427-562 161-293 (1096)
74 CHL00095 clpC Clp protease ATP 97.3 0.0013 2.7E-08 74.5 10.2 45 152-196 178-222 (821)
75 KOG4579 Leucine-rich repeat (L 97.2 7.2E-05 1.6E-09 62.6 -0.1 83 430-516 53-137 (177)
76 PF00004 AAA: ATPase family as 97.2 0.00067 1.4E-08 58.1 5.9 67 177-256 1-70 (132)
77 PF13173 AAA_14: AAA domain 97.2 0.00061 1.3E-08 58.3 5.6 72 174-262 2-79 (128)
78 KOG0531 Protein phosphatase 1, 97.2 0.00014 3.1E-09 75.7 1.7 87 476-564 92-178 (414)
79 KOG1644 U2-associated snRNP A' 97.2 0.00054 1.2E-08 61.3 4.8 99 432-533 44-149 (233)
80 COG0466 Lon ATP-dependent Lon 97.2 0.014 3.1E-07 62.2 16.0 96 153-256 323-429 (782)
81 PRK13341 recombination factor 97.2 0.00065 1.4E-08 74.8 6.5 45 152-196 27-74 (725)
82 KOG1859 Leucine-rich repeat pr 97.2 3.6E-05 7.8E-10 80.8 -3.0 79 475-556 183-263 (1096)
83 smart00382 AAA ATPases associa 97.2 0.0019 4E-08 55.7 8.2 83 174-257 2-91 (148)
84 KOG2004 Mitochondrial ATP-depe 97.1 0.0071 1.5E-07 64.2 12.9 61 152-212 410-480 (906)
85 PRK03992 proteasome-activating 97.1 0.0014 3.1E-08 67.4 8.0 94 150-256 128-236 (389)
86 PF05659 RPW8: Arabidopsis bro 97.1 0.0059 1.3E-07 53.0 10.5 111 2-126 3-114 (147)
87 TIGR01242 26Sp45 26S proteasom 97.1 0.0025 5.4E-08 65.2 9.2 96 148-256 117-227 (364)
88 PLN03025 replication factor C 97.1 0.0025 5.5E-08 63.8 9.1 46 151-196 11-56 (319)
89 TIGR02639 ClpA ATP-dependent C 97.0 0.0033 7.1E-08 70.3 10.5 45 152-196 181-225 (731)
90 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 59.5 5.2 100 452-556 42-149 (233)
91 PRK12608 transcription termina 97.0 0.0053 1.1E-07 61.5 10.6 94 162-255 120-231 (380)
92 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0017 3.7E-08 61.6 6.8 40 157-196 21-60 (226)
93 PHA00729 NTP-binding motif con 97.0 0.0036 7.7E-08 58.3 8.3 34 163-196 6-39 (226)
94 PRK08118 topology modulation p 96.9 0.00051 1.1E-08 61.7 2.5 22 175-196 2-23 (167)
95 PRK06893 DNA replication initi 96.9 0.0038 8.3E-08 59.3 8.6 24 173-196 38-61 (229)
96 PRK07261 topology modulation p 96.9 0.0036 7.9E-08 56.4 8.0 21 176-196 2-22 (171)
97 PRK10865 protein disaggregatio 96.9 0.0034 7.3E-08 71.1 9.3 45 152-196 177-221 (857)
98 PHA02544 44 clamp loader, smal 96.9 0.0037 8E-08 62.7 8.6 47 150-196 18-65 (316)
99 TIGR03689 pup_AAA proteasome A 96.9 0.004 8.7E-08 65.5 8.9 49 148-196 177-238 (512)
100 PRK00440 rfc replication facto 96.8 0.0066 1.4E-07 60.9 10.0 45 152-196 16-60 (319)
101 PRK14962 DNA polymerase III su 96.8 0.0057 1.2E-07 64.2 9.7 45 152-196 13-58 (472)
102 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0043 9.3E-08 70.1 9.3 46 151-196 185-230 (852)
103 COG1222 RPT1 ATP-dependent 26S 96.8 0.018 3.9E-07 56.4 11.7 97 146-255 144-255 (406)
104 KOG0991 Replication factor C, 96.8 0.0053 1.2E-07 56.2 7.6 46 151-196 25-70 (333)
105 KOG2227 Pre-initiation complex 96.8 0.013 2.8E-07 59.4 11.0 106 151-256 148-268 (529)
106 PTZ00454 26S protease regulato 96.8 0.0056 1.2E-07 62.8 8.9 96 148-256 140-250 (398)
107 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.7E-08 55.6 3.3 30 176-205 1-32 (121)
108 PRK12323 DNA polymerase III su 96.7 0.0098 2.1E-07 63.6 10.3 45 152-196 15-60 (700)
109 COG2909 MalT ATP-dependent tra 96.7 0.017 3.8E-07 62.7 12.2 97 154-254 20-139 (894)
110 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0024 5.2E-08 63.6 5.3 43 154-196 52-100 (361)
111 PRK14963 DNA polymerase III su 96.7 0.0072 1.6E-07 64.0 9.2 45 152-196 13-58 (504)
112 COG3899 Predicted ATPase [Gene 96.6 0.017 3.7E-07 65.3 12.2 43 154-196 1-46 (849)
113 TIGR02237 recomb_radB DNA repa 96.6 0.011 2.3E-07 55.4 9.0 80 173-254 11-107 (209)
114 PRK14958 DNA polymerase III su 96.6 0.009 1.9E-07 63.5 9.2 46 151-196 14-60 (509)
115 KOG1909 Ran GTPase-activating 96.6 0.0013 2.8E-08 63.8 2.4 131 429-560 156-310 (382)
116 PRK06696 uridine kinase; Valid 96.6 0.0034 7.4E-08 59.4 5.4 40 157-196 2-44 (223)
117 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0081 1.7E-07 68.3 9.2 45 152-196 172-216 (852)
118 COG3903 Predicted ATPase [Gene 96.5 0.0043 9.3E-08 61.9 5.9 170 173-347 13-235 (414)
119 PRK14957 DNA polymerase III su 96.5 0.0093 2E-07 63.5 8.9 45 152-196 15-60 (546)
120 PRK08116 hypothetical protein; 96.5 0.03 6.5E-07 54.4 11.8 67 175-254 115-188 (268)
121 PRK14949 DNA polymerase III su 96.5 0.008 1.7E-07 66.5 8.5 46 151-196 14-60 (944)
122 PRK14961 DNA polymerase III su 96.5 0.015 3.4E-07 59.3 10.1 45 152-196 15-60 (363)
123 KOG0733 Nuclear AAA ATPase (VC 96.5 0.011 2.4E-07 61.6 8.8 92 152-256 189-294 (802)
124 PRK07003 DNA polymerase III su 96.5 0.058 1.3E-06 58.9 14.4 45 152-196 15-60 (830)
125 PRK05564 DNA polymerase III su 96.5 0.021 4.6E-07 57.1 10.7 44 153-196 4-48 (313)
126 PRK14956 DNA polymerase III su 96.5 0.0069 1.5E-07 62.9 7.2 46 151-196 16-62 (484)
127 PRK11034 clpA ATP-dependent Cl 96.5 0.0022 4.7E-08 71.1 3.7 44 153-196 186-229 (758)
128 PRK05896 DNA polymerase III su 96.4 0.0076 1.6E-07 64.3 7.5 51 151-201 14-68 (605)
129 PF04665 Pox_A32: Poxvirus A32 96.4 0.011 2.3E-07 55.8 7.5 21 176-196 15-35 (241)
130 PRK08727 hypothetical protein; 96.4 0.013 2.9E-07 55.7 8.2 44 153-196 19-63 (233)
131 PF05673 DUF815: Protein of un 96.4 0.015 3.2E-07 54.6 8.0 46 151-196 25-74 (249)
132 PRK14960 DNA polymerase III su 96.4 0.013 2.8E-07 62.9 8.6 46 151-196 13-59 (702)
133 TIGR00763 lon ATP-dependent pr 96.3 0.021 4.6E-07 64.3 10.7 44 153-196 320-369 (775)
134 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.02 4.3E-07 54.6 9.1 82 173-255 18-126 (235)
135 PRK12402 replication factor C 96.3 0.0045 9.8E-08 62.6 4.9 45 152-196 14-58 (337)
136 PRK14964 DNA polymerase III su 96.3 0.019 4.1E-07 60.3 9.4 46 151-196 11-57 (491)
137 PTZ00361 26 proteosome regulat 96.3 0.0093 2E-07 61.8 7.0 49 148-196 178-239 (438)
138 PRK10787 DNA-binding ATP-depen 96.2 0.055 1.2E-06 60.6 13.1 44 153-196 322-371 (784)
139 TIGR01241 FtsH_fam ATP-depende 96.2 0.012 2.7E-07 62.7 7.9 96 148-256 50-159 (495)
140 COG2255 RuvB Holliday junction 96.2 0.006 1.3E-07 57.8 4.6 46 151-196 24-74 (332)
141 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.012 2.6E-07 53.7 6.7 29 176-204 1-29 (183)
142 PRK14969 DNA polymerase III su 96.2 0.024 5.2E-07 60.6 9.7 45 152-196 15-60 (527)
143 TIGR02012 tigrfam_recA protein 96.2 0.016 3.5E-07 57.3 7.7 78 173-255 54-144 (321)
144 KOG1969 DNA replication checkp 96.1 0.012 2.6E-07 62.7 6.8 70 173-256 325-399 (877)
145 PRK14951 DNA polymerase III su 96.1 0.019 4.2E-07 62.0 8.6 46 151-196 14-60 (618)
146 PRK12377 putative replication 96.1 0.032 6.9E-07 53.3 9.3 67 173-254 100-173 (248)
147 PF00560 LRR_1: Leucine Rich R 96.1 0.0022 4.8E-08 35.9 0.8 21 525-545 1-21 (22)
148 PRK08691 DNA polymerase III su 96.1 0.023 5E-07 61.5 8.9 46 151-196 14-60 (709)
149 KOG2982 Uncharacterized conser 96.1 0.002 4.3E-08 61.1 0.9 57 500-556 95-155 (418)
150 KOG2123 Uncharacterized conser 96.1 0.00091 2E-08 62.8 -1.4 79 474-553 36-123 (388)
151 KOG0736 Peroxisome assembly fa 96.1 0.038 8.2E-07 59.3 10.1 96 147-256 666-776 (953)
152 PRK09354 recA recombinase A; P 96.1 0.022 4.7E-07 56.9 7.9 78 173-255 59-149 (349)
153 PRK06645 DNA polymerase III su 96.0 0.037 8E-07 58.5 9.9 46 151-196 19-65 (507)
154 TIGR02238 recomb_DMC1 meiotic 96.0 0.031 6.6E-07 55.5 8.8 82 173-255 95-202 (313)
155 PRK09087 hypothetical protein; 96.0 0.037 7.9E-07 52.3 8.9 24 173-196 43-66 (226)
156 PRK09361 radB DNA repair and r 96.0 0.033 7.1E-07 52.7 8.6 39 173-212 22-67 (225)
157 PLN00020 ribulose bisphosphate 96.0 0.025 5.5E-07 56.3 7.8 33 172-204 146-180 (413)
158 cd00983 recA RecA is a bacter 96.0 0.022 4.7E-07 56.4 7.4 78 173-255 54-144 (325)
159 KOG1909 Ran GTPase-activating 95.9 0.0051 1.1E-07 59.8 2.8 62 475-536 181-253 (382)
160 PRK06547 hypothetical protein; 95.9 0.011 2.3E-07 53.3 4.8 32 165-196 6-37 (172)
161 PRK08939 primosomal protein Dn 95.9 0.047 1E-06 54.1 9.7 82 157-254 135-227 (306)
162 PRK08084 DNA replication initi 95.9 0.21 4.5E-06 47.6 13.8 47 159-205 30-83 (235)
163 COG0542 clpA ATP-binding subun 95.9 0.26 5.6E-06 54.2 15.8 98 153-256 491-605 (786)
164 PF01695 IstB_IS21: IstB-like 95.9 0.016 3.5E-07 52.5 5.8 66 173-254 46-118 (178)
165 PRK07667 uridine kinase; Provi 95.9 0.011 2.5E-07 54.4 4.9 34 163-196 4-39 (193)
166 KOG0729 26S proteasome regulat 95.9 0.071 1.5E-06 50.0 9.8 95 147-254 171-280 (435)
167 PF00448 SRP54: SRP54-type pro 95.9 0.05 1.1E-06 50.1 9.0 50 174-223 1-58 (196)
168 PRK09270 nucleoside triphospha 95.9 0.013 2.7E-07 55.8 5.3 25 172-196 31-55 (229)
169 PRK15455 PrkA family serine pr 95.9 0.01 2.2E-07 62.5 4.8 44 153-196 76-125 (644)
170 PRK07994 DNA polymerase III su 95.8 0.027 5.9E-07 61.0 8.2 46 151-196 14-60 (647)
171 CHL00176 ftsH cell division pr 95.8 0.04 8.6E-07 60.1 9.3 91 152-255 182-286 (638)
172 PF14516 AAA_35: AAA-like doma 95.8 0.13 2.8E-06 51.8 12.4 105 151-256 9-139 (331)
173 PF13238 AAA_18: AAA domain; P 95.8 0.0076 1.6E-07 51.2 3.1 21 177-197 1-21 (129)
174 PRK07952 DNA replication prote 95.8 0.072 1.6E-06 50.8 9.9 82 160-255 83-173 (244)
175 PF08423 Rad51: Rad51; InterP 95.8 0.053 1.1E-06 52.3 9.1 81 173-254 37-143 (256)
176 KOG2739 Leucine-rich acidic nu 95.8 0.0045 9.8E-08 57.9 1.7 79 477-555 63-151 (260)
177 cd01133 F1-ATPase_beta F1 ATP 95.8 0.043 9.3E-07 52.9 8.4 83 173-255 68-174 (274)
178 PF00485 PRK: Phosphoribulokin 95.8 0.0079 1.7E-07 55.5 3.3 21 176-196 1-21 (194)
179 CHL00181 cbbX CbbX; Provisiona 95.7 0.063 1.4E-06 52.7 9.7 22 175-196 60-81 (287)
180 cd01120 RecA-like_NTPases RecA 95.7 0.054 1.2E-06 48.0 8.6 32 176-207 1-39 (165)
181 PF07728 AAA_5: AAA domain (dy 95.7 0.019 4.2E-07 49.7 5.4 39 177-215 2-44 (139)
182 COG1223 Predicted ATPase (AAA+ 95.7 0.044 9.6E-07 51.3 7.8 90 152-254 120-220 (368)
183 KOG0733 Nuclear AAA ATPase (VC 95.7 0.05 1.1E-06 57.0 9.0 70 174-256 545-616 (802)
184 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9.2E-08 34.7 0.8 21 480-500 1-21 (22)
185 COG1419 FlhF Flagellar GTP-bin 95.7 0.094 2E-06 52.9 10.6 92 160-253 185-290 (407)
186 PRK07764 DNA polymerase III su 95.7 0.025 5.4E-07 63.4 7.3 45 152-196 14-59 (824)
187 TIGR01243 CDC48 AAA family ATP 95.7 0.031 6.6E-07 62.8 8.1 46 151-196 176-234 (733)
188 PRK14950 DNA polymerase III su 95.7 0.039 8.4E-07 60.1 8.6 45 152-196 15-60 (585)
189 TIGR00602 rad24 checkpoint pro 95.6 0.022 4.7E-07 61.7 6.5 48 149-196 80-132 (637)
190 PRK05480 uridine/cytidine kina 95.6 0.011 2.3E-07 55.4 3.6 25 172-196 4-28 (209)
191 TIGR01360 aden_kin_iso1 adenyl 95.6 0.031 6.8E-07 51.1 6.7 24 173-196 2-25 (188)
192 TIGR02881 spore_V_K stage V sp 95.6 0.017 3.7E-07 56.0 5.1 43 154-196 7-64 (261)
193 TIGR00235 udk uridine kinase. 95.6 0.01 2.2E-07 55.5 3.4 25 172-196 4-28 (207)
194 PRK08233 hypothetical protein; 95.6 0.01 2.2E-07 54.0 3.4 23 174-196 3-25 (182)
195 COG1484 DnaC DNA replication p 95.5 0.069 1.5E-06 51.4 8.9 83 158-255 88-178 (254)
196 KOG2739 Leucine-rich acidic nu 95.5 0.0059 1.3E-07 57.1 1.5 83 476-560 40-129 (260)
197 PLN03187 meiotic recombination 95.5 0.069 1.5E-06 53.5 9.2 81 173-254 125-231 (344)
198 cd01393 recA_like RecA is a b 95.5 0.068 1.5E-06 50.6 8.7 41 173-213 18-71 (226)
199 COG0563 Adk Adenylate kinase a 95.5 0.034 7.5E-07 50.3 6.2 21 176-196 2-22 (178)
200 TIGR02903 spore_lon_C ATP-depe 95.5 0.016 3.4E-07 63.3 4.7 45 152-196 153-197 (615)
201 cd01394 radB RadB. The archaea 95.4 0.067 1.4E-06 50.3 8.4 36 173-208 18-60 (218)
202 TIGR00390 hslU ATP-dependent p 95.4 0.1 2.2E-06 53.2 9.9 43 154-196 13-69 (441)
203 PF13671 AAA_33: AAA domain; P 95.4 0.014 3E-07 50.8 3.4 21 176-196 1-21 (143)
204 PRK03839 putative kinase; Prov 95.4 0.014 3.1E-07 53.1 3.4 29 176-204 2-32 (180)
205 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.8E-07 43.8 2.5 21 176-196 1-21 (69)
206 PRK08181 transposase; Validate 95.3 0.062 1.3E-06 52.1 7.8 65 174-254 106-177 (269)
207 PRK14959 DNA polymerase III su 95.3 0.066 1.4E-06 57.6 8.7 45 152-196 15-60 (624)
208 COG1618 Predicted nucleotide k 95.3 0.013 2.8E-07 50.8 2.7 22 175-196 6-27 (179)
209 PRK07940 DNA polymerase III su 95.3 0.08 1.7E-06 54.3 9.0 44 153-196 5-58 (394)
210 COG1428 Deoxynucleoside kinase 95.3 0.031 6.7E-07 50.9 5.2 44 174-217 4-51 (216)
211 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.12 2.6E-06 49.3 9.7 41 173-215 20-67 (237)
212 PTZ00301 uridine kinase; Provi 95.3 0.015 3.2E-07 54.2 3.3 23 174-196 3-25 (210)
213 PRK14955 DNA polymerase III su 95.3 0.024 5.2E-07 58.6 5.1 45 152-196 15-60 (397)
214 PRK06762 hypothetical protein; 95.3 0.015 3.3E-07 52.1 3.2 23 174-196 2-24 (166)
215 PRK11889 flhF flagellar biosyn 95.2 0.21 4.4E-06 50.6 11.2 24 173-196 240-263 (436)
216 PRK08533 flagellar accessory p 95.2 0.13 2.8E-06 48.8 9.4 42 173-216 23-71 (230)
217 PRK06526 transposase; Provisio 95.2 0.045 9.8E-07 52.6 6.3 23 174-196 98-120 (254)
218 TIGR02880 cbbX_cfxQ probable R 95.2 0.13 2.9E-06 50.4 9.7 21 176-196 60-80 (284)
219 PRK09183 transposase/IS protei 95.1 0.079 1.7E-06 51.2 7.9 23 174-196 102-124 (259)
220 COG1102 Cmk Cytidylate kinase 95.1 0.034 7.3E-07 48.3 4.6 43 176-224 2-46 (179)
221 KOG0730 AAA+-type ATPase [Post 95.1 0.16 3.5E-06 53.9 10.5 96 147-255 428-538 (693)
222 TIGR02639 ClpA ATP-dependent C 95.1 0.072 1.6E-06 59.7 8.7 99 153-256 454-565 (731)
223 COG0572 Udk Uridine kinase [Nu 95.1 0.018 4E-07 53.0 3.3 24 173-196 7-30 (218)
224 PRK14088 dnaA chromosomal repl 95.1 0.058 1.3E-06 56.4 7.4 67 174-255 130-205 (440)
225 KOG0734 AAA+-type ATPase conta 95.1 0.091 2E-06 54.2 8.3 91 152-256 303-408 (752)
226 PRK06921 hypothetical protein; 95.1 0.096 2.1E-06 50.8 8.4 24 173-196 116-139 (266)
227 cd01121 Sms Sms (bacterial rad 95.1 0.063 1.4E-06 54.6 7.3 81 173-256 81-170 (372)
228 KOG0739 AAA+-type ATPase [Post 95.1 0.11 2.5E-06 49.6 8.3 93 149-254 129-235 (439)
229 PTZ00035 Rad51 protein; Provis 95.0 0.15 3.3E-06 51.2 9.9 82 173-255 117-224 (337)
230 PLN03186 DNA repair protein RA 95.0 0.11 2.4E-06 52.1 8.9 81 173-254 122-228 (342)
231 PF00308 Bac_DnaA: Bacterial d 95.0 0.068 1.5E-06 50.3 7.0 66 174-255 34-108 (219)
232 TIGR00362 DnaA chromosomal rep 95.0 0.057 1.2E-06 56.1 7.1 65 175-255 137-210 (405)
233 KOG3347 Predicted nucleotide k 95.0 0.018 3.9E-07 49.1 2.6 34 174-207 7-42 (176)
234 cd00544 CobU Adenosylcobinamid 95.0 0.084 1.8E-06 47.3 7.2 77 177-254 2-83 (169)
235 COG4088 Predicted nucleotide k 95.0 0.016 3.6E-07 52.2 2.5 27 175-201 2-31 (261)
236 PF08433 KTI12: Chromatin asso 95.0 0.065 1.4E-06 52.0 6.9 22 175-196 2-23 (270)
237 PRK06067 flagellar accessory p 95.0 0.11 2.4E-06 49.5 8.4 79 173-254 24-130 (234)
238 PRK13949 shikimate kinase; Pro 95.0 0.028 6.1E-07 50.5 4.1 22 175-196 2-23 (169)
239 TIGR00554 panK_bact pantothena 95.0 0.029 6.4E-07 54.8 4.5 25 172-196 60-84 (290)
240 TIGR02236 recomb_radA DNA repa 95.0 0.13 2.8E-06 51.3 9.3 82 173-255 94-203 (310)
241 PRK14948 DNA polymerase III su 94.9 0.15 3.2E-06 55.7 10.2 46 151-196 14-60 (620)
242 COG0542 clpA ATP-binding subun 94.9 0.03 6.5E-07 61.3 4.8 105 152-256 169-274 (786)
243 COG4608 AppF ABC-type oligopep 94.9 0.11 2.4E-06 49.4 8.0 81 172-253 37-136 (268)
244 PF00154 RecA: recA bacterial 94.9 0.18 3.9E-06 49.9 9.7 79 173-256 52-143 (322)
245 COG0237 CoaE Dephospho-CoA kin 94.9 0.083 1.8E-06 48.7 7.0 23 174-196 2-24 (201)
246 PRK04328 hypothetical protein; 94.9 0.14 3E-06 49.3 8.8 34 173-206 22-62 (249)
247 TIGR03499 FlhF flagellar biosy 94.9 0.14 3E-06 50.3 8.9 24 173-196 193-216 (282)
248 cd00227 CPT Chloramphenicol (C 94.9 0.022 4.7E-07 51.6 3.1 32 174-205 2-35 (175)
249 KOG0727 26S proteasome regulat 94.9 0.38 8.2E-06 44.9 10.9 55 150-204 152-221 (408)
250 PRK04040 adenylate kinase; Pro 94.8 0.024 5.3E-07 51.9 3.3 23 174-196 2-24 (188)
251 PRK11034 clpA ATP-dependent Cl 94.8 0.079 1.7E-06 59.0 7.8 43 154-196 459-510 (758)
252 PRK14722 flhF flagellar biosyn 94.8 0.12 2.5E-06 52.4 8.4 79 173-254 136-225 (374)
253 PRK14087 dnaA chromosomal repl 94.8 0.064 1.4E-06 56.3 6.8 70 175-256 142-218 (450)
254 TIGR01243 CDC48 AAA family ATP 94.8 0.11 2.4E-06 58.3 9.2 93 151-256 451-558 (733)
255 PRK04301 radA DNA repair and r 94.8 0.16 3.5E-06 50.8 9.4 82 173-255 101-209 (317)
256 PRK08972 fliI flagellum-specif 94.8 0.11 2.5E-06 53.4 8.3 85 172-256 160-264 (444)
257 PRK10865 protein disaggregatio 94.8 0.11 2.4E-06 59.1 9.0 44 153-196 568-620 (857)
258 TIGR02902 spore_lonB ATP-depen 94.7 0.048 1E-06 58.5 5.7 45 152-196 64-108 (531)
259 PRK08149 ATP synthase SpaL; Va 94.7 0.15 3.1E-06 52.6 8.9 85 172-256 149-253 (428)
260 PRK00625 shikimate kinase; Pro 94.7 0.023 5E-07 51.2 2.8 21 176-196 2-22 (173)
261 PTZ00088 adenylate kinase 1; P 94.7 0.083 1.8E-06 49.9 6.6 20 177-196 9-28 (229)
262 cd02023 UMPK Uridine monophosp 94.7 0.02 4.4E-07 53.0 2.5 21 176-196 1-21 (198)
263 cd02025 PanK Pantothenate kina 94.7 0.02 4.3E-07 53.9 2.4 21 176-196 1-21 (220)
264 CHL00195 ycf46 Ycf46; Provisio 94.7 0.15 3.3E-06 53.8 9.2 91 152-255 227-329 (489)
265 TIGR01425 SRP54_euk signal rec 94.7 3 6.5E-05 43.2 18.2 24 173-196 99-122 (429)
266 TIGR02239 recomb_RAD51 DNA rep 94.7 0.16 3.4E-06 50.7 8.8 81 173-254 95-201 (316)
267 cd02024 NRK1 Nicotinamide ribo 94.7 0.021 4.6E-07 52.0 2.5 21 176-196 1-21 (187)
268 KOG2120 SCF ubiquitin ligase, 94.6 0.0078 1.7E-07 57.3 -0.4 63 428-492 208-273 (419)
269 PRK10536 hypothetical protein; 94.6 0.12 2.6E-06 49.2 7.4 44 151-196 53-96 (262)
270 KOG2120 SCF ubiquitin ligase, 94.6 0.0069 1.5E-07 57.6 -0.8 126 429-558 233-374 (419)
271 cd01124 KaiC KaiC is a circadi 94.6 0.14 3E-06 46.7 7.9 37 177-215 2-45 (187)
272 PRK06002 fliI flagellum-specif 94.6 0.14 3E-06 52.9 8.4 84 173-256 164-266 (450)
273 PRK00131 aroK shikimate kinase 94.6 0.03 6.5E-07 50.5 3.3 24 173-196 3-26 (175)
274 PRK05342 clpX ATP-dependent pr 94.6 0.095 2.1E-06 54.1 7.2 43 154-196 72-130 (412)
275 PRK00279 adk adenylate kinase; 94.6 0.14 3E-06 48.1 7.9 29 176-204 2-30 (215)
276 PRK08927 fliI flagellum-specif 94.6 0.18 3.9E-06 52.1 9.1 85 172-256 156-260 (442)
277 PRK14532 adenylate kinase; Pro 94.5 0.13 2.7E-06 47.2 7.4 28 177-204 3-30 (188)
278 PRK05541 adenylylsulfate kinas 94.5 0.032 6.9E-07 50.6 3.3 24 173-196 6-29 (176)
279 PRK12726 flagellar biosynthesi 94.5 0.21 4.5E-06 50.4 9.2 81 173-253 205-294 (407)
280 TIGR03346 chaperone_ClpB ATP-d 94.5 0.12 2.7E-06 58.8 8.6 44 153-196 565-617 (852)
281 TIGR00678 holB DNA polymerase 94.5 0.23 5E-06 45.5 9.0 33 164-196 3-36 (188)
282 PRK00889 adenylylsulfate kinas 94.5 0.036 7.7E-07 50.2 3.5 24 173-196 3-26 (175)
283 cd01136 ATPase_flagellum-secre 94.5 0.21 4.6E-06 49.6 9.1 84 172-255 67-170 (326)
284 PF00158 Sigma54_activat: Sigm 94.5 0.15 3.2E-06 45.8 7.4 63 156-218 2-72 (168)
285 TIGR02322 phosphon_PhnN phosph 94.5 0.031 6.7E-07 50.8 3.1 22 175-196 2-23 (179)
286 PLN02200 adenylate kinase fami 94.4 0.11 2.3E-06 49.4 6.8 24 173-196 42-65 (234)
287 cd03115 SRP The signal recogni 94.4 0.17 3.7E-06 45.6 7.8 21 176-196 2-22 (173)
288 TIGR03345 VI_ClpV1 type VI sec 94.4 0.14 3.1E-06 58.0 8.8 44 153-196 566-618 (852)
289 PRK00149 dnaA chromosomal repl 94.4 0.097 2.1E-06 55.2 7.1 23 174-196 148-170 (450)
290 PRK14527 adenylate kinase; Pro 94.4 0.082 1.8E-06 48.6 5.8 24 173-196 5-28 (191)
291 KOG3864 Uncharacterized conser 94.4 0.0081 1.8E-07 54.0 -0.9 32 502-533 151-185 (221)
292 KOG0738 AAA+-type ATPase [Post 94.4 0.086 1.9E-06 52.3 6.0 54 153-206 212-279 (491)
293 PF00006 ATP-synt_ab: ATP synt 94.4 0.12 2.7E-06 48.1 6.8 82 173-254 14-115 (215)
294 PRK09519 recA DNA recombinatio 94.4 0.15 3.3E-06 56.3 8.5 78 173-255 59-149 (790)
295 TIGR00150 HI0065_YjeE ATPase, 94.4 0.084 1.8E-06 45.0 5.2 37 160-196 6-44 (133)
296 PRK14954 DNA polymerase III su 94.3 0.051 1.1E-06 58.9 4.9 46 151-196 14-60 (620)
297 PF01583 APS_kinase: Adenylyls 94.3 0.041 8.8E-07 48.3 3.4 23 174-196 2-24 (156)
298 PRK13531 regulatory ATPase Rav 94.3 0.052 1.1E-06 56.4 4.6 41 154-196 21-61 (498)
299 PRK12422 chromosomal replicati 94.3 0.11 2.5E-06 54.2 7.3 66 175-256 142-214 (445)
300 cd02028 UMPK_like Uridine mono 94.3 0.029 6.3E-07 51.0 2.6 21 176-196 1-21 (179)
301 PF03205 MobB: Molybdopterin g 94.3 0.041 8.8E-07 47.7 3.3 22 175-196 1-22 (140)
302 PRK09112 DNA polymerase III su 94.3 0.092 2E-06 53.1 6.3 47 150-196 20-67 (351)
303 PRK00771 signal recognition pa 94.3 0.28 6.1E-06 50.9 10.0 79 173-254 94-185 (437)
304 PRK14974 cell division protein 94.3 0.42 9.1E-06 47.9 10.8 24 173-196 139-162 (336)
305 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.22 4.9E-06 48.1 8.7 34 173-206 35-75 (259)
306 PRK05563 DNA polymerase III su 94.3 0.18 3.9E-06 54.5 8.8 46 151-196 14-60 (559)
307 PRK08903 DnaA regulatory inact 94.2 0.073 1.6E-06 50.4 5.2 37 160-196 27-64 (227)
308 PRK06217 hypothetical protein; 94.2 0.033 7.2E-07 50.8 2.8 21 176-196 3-23 (183)
309 PF13504 LRR_7: Leucine rich r 94.2 0.03 6.5E-07 29.0 1.4 14 526-539 3-16 (17)
310 PRK06835 DNA replication prote 94.2 0.23 5E-06 49.6 8.9 23 174-196 183-205 (329)
311 COG2019 AdkA Archaeal adenylat 94.2 0.045 9.7E-07 47.7 3.2 46 174-222 4-49 (189)
312 COG0194 Gmk Guanylate kinase [ 94.2 0.067 1.5E-06 47.8 4.4 33 174-206 4-37 (191)
313 TIGR02030 BchI-ChlI magnesium 94.2 0.078 1.7E-06 53.2 5.4 44 153-196 4-47 (337)
314 PF12775 AAA_7: P-loop contain 94.1 0.067 1.4E-06 52.1 4.8 33 163-196 23-55 (272)
315 PRK14530 adenylate kinase; Pro 94.1 0.047 1E-06 51.3 3.6 22 175-196 4-25 (215)
316 KOG0735 AAA+-type ATPase [Post 94.1 0.15 3.2E-06 54.5 7.5 65 175-256 432-506 (952)
317 TIGR03263 guanyl_kin guanylate 94.1 0.04 8.7E-07 50.1 3.1 22 175-196 2-23 (180)
318 PRK14970 DNA polymerase III su 94.1 0.07 1.5E-06 54.7 5.2 45 152-196 16-61 (367)
319 PF07726 AAA_3: ATPase family 94.1 0.044 9.5E-07 46.0 3.0 20 177-196 2-21 (131)
320 COG0468 RecA RecA/RadA recombi 94.1 0.24 5.2E-06 48.0 8.4 82 173-255 59-152 (279)
321 cd02021 GntK Gluconate kinase 94.1 0.036 7.7E-07 48.7 2.6 21 176-196 1-21 (150)
322 CHL00095 clpC Clp protease ATP 94.1 0.17 3.8E-06 57.4 8.6 44 153-196 509-561 (821)
323 CHL00081 chlI Mg-protoporyphyr 94.1 0.065 1.4E-06 53.8 4.6 45 152-196 16-60 (350)
324 TIGR02397 dnaX_nterm DNA polym 94.0 0.076 1.7E-06 54.1 5.3 46 151-196 12-58 (355)
325 KOG0731 AAA+-type ATPase conta 94.0 0.23 4.9E-06 54.3 8.9 91 153-256 311-415 (774)
326 TIGR02640 gas_vesic_GvpN gas v 94.0 0.14 3E-06 49.7 6.7 52 160-213 9-64 (262)
327 PRK10751 molybdopterin-guanine 94.0 0.05 1.1E-06 48.7 3.3 24 173-196 5-28 (173)
328 cd01878 HflX HflX subfamily. 94.0 0.21 4.6E-06 46.3 7.8 26 172-197 39-64 (204)
329 TIGR03498 FliI_clade3 flagella 94.0 0.2 4.4E-06 51.6 8.1 84 173-256 139-242 (418)
330 KOG2982 Uncharacterized conser 94.0 0.02 4.3E-07 54.6 0.7 103 434-537 49-159 (418)
331 PRK05688 fliI flagellum-specif 94.0 0.23 5E-06 51.4 8.5 85 172-256 166-270 (451)
332 PRK00300 gmk guanylate kinase; 93.9 0.049 1.1E-06 50.7 3.3 24 173-196 4-27 (205)
333 PRK13947 shikimate kinase; Pro 93.9 0.042 9.2E-07 49.4 2.8 21 176-196 3-23 (171)
334 cd02020 CMPK Cytidine monophos 93.9 0.039 8.5E-07 48.1 2.5 29 176-204 1-31 (147)
335 KOG0473 Leucine-rich repeat pr 93.9 0.0035 7.7E-08 57.4 -4.2 83 450-536 40-123 (326)
336 PRK13975 thymidylate kinase; P 93.9 0.1 2.2E-06 48.2 5.3 22 175-196 3-24 (196)
337 PRK06936 type III secretion sy 93.9 0.24 5.2E-06 51.2 8.4 85 172-256 160-264 (439)
338 PRK09111 DNA polymerase III su 93.9 0.069 1.5E-06 57.8 4.8 47 150-196 21-68 (598)
339 PF13177 DNA_pol3_delta2: DNA 93.9 0.48 1E-05 42.2 9.4 40 157-196 1-41 (162)
340 COG2607 Predicted ATPase (AAA+ 93.9 0.4 8.7E-06 44.6 8.8 82 152-255 59-150 (287)
341 COG4167 SapF ABC-type antimicr 93.8 0.19 4.1E-06 44.6 6.4 69 173-241 38-134 (267)
342 PRK14952 DNA polymerase III su 93.8 0.075 1.6E-06 57.2 4.9 45 152-196 12-57 (584)
343 PRK13948 shikimate kinase; Pro 93.8 0.11 2.3E-06 47.3 5.2 24 173-196 9-32 (182)
344 PRK12727 flagellar biosynthesi 93.8 0.23 5E-06 52.3 8.2 24 173-196 349-372 (559)
345 COG1124 DppF ABC-type dipeptid 93.8 0.05 1.1E-06 50.7 3.0 25 172-196 31-55 (252)
346 PRK09099 type III secretion sy 93.8 0.24 5.2E-06 51.3 8.3 85 172-256 161-265 (441)
347 PRK07594 type III secretion sy 93.8 0.22 4.8E-06 51.4 8.0 84 172-255 153-256 (433)
348 PRK03846 adenylylsulfate kinas 93.8 0.058 1.2E-06 49.9 3.5 25 172-196 22-46 (198)
349 PRK10078 ribose 1,5-bisphospho 93.8 0.051 1.1E-06 49.7 3.1 22 175-196 3-24 (186)
350 TIGR00064 ftsY signal recognit 93.8 0.4 8.7E-06 46.7 9.4 25 172-196 70-94 (272)
351 COG1936 Predicted nucleotide k 93.8 0.049 1.1E-06 48.0 2.7 21 176-196 2-22 (180)
352 PRK12723 flagellar biosynthesi 93.8 0.45 9.8E-06 48.6 10.1 79 173-254 173-264 (388)
353 PRK10463 hydrogenase nickel in 93.7 0.1 2.3E-06 50.6 5.2 30 167-196 97-126 (290)
354 PRK07471 DNA polymerase III su 93.7 0.1 2.2E-06 53.1 5.3 46 151-196 17-63 (365)
355 PRK05922 type III secretion sy 93.7 0.35 7.6E-06 49.9 9.2 85 172-256 155-259 (434)
356 cd01428 ADK Adenylate kinase ( 93.7 0.21 4.5E-06 45.9 7.0 20 177-196 2-21 (194)
357 PRK05800 cobU adenosylcobinami 93.7 0.15 3.2E-06 45.8 5.8 46 175-221 2-51 (170)
358 TIGR03497 FliI_clade2 flagella 93.7 0.3 6.5E-06 50.4 8.7 85 172-256 135-239 (413)
359 PRK11823 DNA repair protein Ra 93.7 0.22 4.7E-06 52.3 7.9 81 173-256 79-168 (446)
360 PF06745 KaiC: KaiC; InterPro 93.7 0.15 3.2E-06 48.3 6.2 79 173-254 18-125 (226)
361 PRK14531 adenylate kinase; Pro 93.7 0.2 4.4E-06 45.6 6.9 22 175-196 3-24 (183)
362 PRK13407 bchI magnesium chelat 93.7 0.085 1.8E-06 52.8 4.6 45 152-196 7-51 (334)
363 PF06309 Torsin: Torsin; Inte 93.7 0.3 6.4E-06 41.0 7.0 43 154-196 26-75 (127)
364 PRK05642 DNA replication initi 93.6 0.42 9.2E-06 45.4 9.2 23 174-196 45-67 (234)
365 PF13481 AAA_25: AAA domain; P 93.6 0.33 7.2E-06 44.5 8.3 23 174-196 32-54 (193)
366 TIGR02655 circ_KaiC circadian 93.6 0.29 6.2E-06 52.1 8.8 79 173-254 262-363 (484)
367 PRK07721 fliI flagellum-specif 93.6 0.31 6.8E-06 50.7 8.7 84 172-256 156-260 (438)
368 PF00910 RNA_helicase: RNA hel 93.6 0.046 1E-06 44.9 2.2 20 177-196 1-20 (107)
369 COG0464 SpoVK ATPases of the A 93.6 0.34 7.3E-06 51.9 9.4 71 173-256 275-347 (494)
370 TIGR01313 therm_gnt_kin carboh 93.6 0.06 1.3E-06 48.0 3.2 26 177-202 1-28 (163)
371 cd00464 SK Shikimate kinase (S 93.6 0.054 1.2E-06 47.6 2.8 20 177-196 2-21 (154)
372 PRK12339 2-phosphoglycerate ki 93.6 0.079 1.7E-06 48.8 3.9 23 174-196 3-25 (197)
373 KOG0735 AAA+-type ATPase [Post 93.6 0.43 9.3E-06 51.2 9.6 90 153-255 667-771 (952)
374 TIGR00416 sms DNA repair prote 93.6 0.23 5E-06 52.1 7.8 80 173-255 93-181 (454)
375 TIGR00073 hypB hydrogenase acc 93.5 0.075 1.6E-06 49.5 3.8 27 170-196 18-44 (207)
376 COG3267 ExeA Type II secretory 93.5 1.7 3.7E-05 41.1 12.5 86 171-256 48-143 (269)
377 PRK14529 adenylate kinase; Pro 93.5 0.18 3.8E-06 47.4 6.2 20 177-196 3-22 (223)
378 PRK06820 type III secretion sy 93.5 0.28 6.1E-06 50.8 8.2 85 172-256 161-265 (440)
379 cd00820 PEPCK_HprK Phosphoenol 93.5 0.078 1.7E-06 43.2 3.3 28 173-200 14-41 (107)
380 PF01078 Mg_chelatase: Magnesi 93.4 0.16 3.4E-06 46.7 5.5 43 152-196 2-44 (206)
381 PRK05057 aroK shikimate kinase 93.4 0.066 1.4E-06 48.3 3.1 23 174-196 4-26 (172)
382 PRK07960 fliI flagellum-specif 93.4 0.26 5.5E-06 51.0 7.7 85 172-256 173-277 (455)
383 cd02027 APSK Adenosine 5'-phos 93.4 0.056 1.2E-06 47.4 2.6 21 176-196 1-21 (149)
384 PRK07196 fliI flagellum-specif 93.4 0.28 6E-06 50.7 7.9 85 172-256 153-257 (434)
385 KOG0741 AAA+-type ATPase [Post 93.4 0.27 5.7E-06 50.9 7.5 80 172-266 536-620 (744)
386 TIGR00959 ffh signal recogniti 93.4 0.5 1.1E-05 49.0 9.8 24 173-196 98-121 (428)
387 PF13504 LRR_7: Leucine rich r 93.4 0.052 1.1E-06 28.1 1.4 16 480-495 2-17 (17)
388 PRK12678 transcription termina 93.3 0.22 4.7E-06 52.6 7.0 92 165-256 406-515 (672)
389 PF08477 Miro: Miro-like prote 93.3 0.069 1.5E-06 44.6 2.9 20 177-196 2-21 (119)
390 TIGR01663 PNK-3'Pase polynucle 93.3 0.17 3.8E-06 53.6 6.5 65 171-255 366-430 (526)
391 PF00005 ABC_tran: ABC transpo 93.3 0.073 1.6E-06 45.8 3.1 23 174-196 11-33 (137)
392 COG1373 Predicted ATPase (AAA+ 93.3 0.19 4.1E-06 51.9 6.5 90 158-266 22-116 (398)
393 PF00406 ADK: Adenylate kinase 93.3 0.094 2E-06 46.1 3.8 18 179-196 1-18 (151)
394 KOG2123 Uncharacterized conser 93.2 0.0068 1.5E-07 57.1 -3.6 98 429-531 18-124 (388)
395 cd00071 GMPK Guanosine monopho 93.2 0.063 1.4E-06 46.4 2.6 21 176-196 1-21 (137)
396 TIGR03496 FliI_clade1 flagella 93.2 0.39 8.4E-06 49.5 8.7 84 172-255 135-238 (411)
397 TIGR01351 adk adenylate kinase 93.2 0.22 4.7E-06 46.6 6.4 20 177-196 2-21 (210)
398 PRK04296 thymidine kinase; Pro 93.2 0.15 3.3E-06 46.8 5.2 76 175-253 3-87 (190)
399 PRK05439 pantothenate kinase; 93.2 0.12 2.6E-06 50.9 4.8 25 172-196 84-108 (311)
400 PRK12724 flagellar biosynthesi 93.1 0.46 9.9E-06 48.7 8.8 23 174-196 223-245 (432)
401 PRK06793 fliI flagellum-specif 93.1 0.41 8.8E-06 49.5 8.6 84 172-256 154-258 (432)
402 PRK06305 DNA polymerase III su 93.1 0.13 2.9E-06 53.9 5.3 46 151-196 15-61 (451)
403 PF03193 DUF258: Protein of un 93.1 0.15 3.2E-06 45.0 4.7 32 162-196 26-57 (161)
404 PRK13946 shikimate kinase; Pro 93.1 0.073 1.6E-06 48.6 2.9 23 174-196 10-32 (184)
405 COG1066 Sms Predicted ATP-depe 93.0 0.35 7.6E-06 48.7 7.6 81 173-256 92-180 (456)
406 TIGR01650 PD_CobS cobaltochela 93.0 0.43 9.3E-06 47.3 8.3 54 154-209 46-103 (327)
407 PRK05703 flhF flagellar biosyn 93.0 0.33 7.1E-06 50.5 7.9 22 174-195 221-242 (424)
408 PRK05201 hslU ATP-dependent pr 93.0 0.25 5.4E-06 50.5 6.7 44 153-196 15-72 (443)
409 PF08298 AAA_PrkA: PrkA AAA do 93.0 0.17 3.6E-06 50.3 5.3 44 153-196 61-110 (358)
410 PHA02244 ATPase-like protein 93.0 0.25 5.4E-06 49.6 6.6 40 163-204 110-151 (383)
411 PRK04182 cytidylate kinase; Pr 93.0 0.08 1.7E-06 48.0 3.0 21 176-196 2-22 (180)
412 cd01132 F1_ATPase_alpha F1 ATP 93.0 0.56 1.2E-05 45.2 8.7 84 173-256 68-173 (274)
413 TIGR01026 fliI_yscN ATPase Fli 93.0 0.44 9.6E-06 49.6 8.7 84 172-255 161-264 (440)
414 PRK06995 flhF flagellar biosyn 92.9 0.42 9.1E-06 50.1 8.5 23 174-196 256-278 (484)
415 TIGR03324 alt_F1F0_F1_al alter 92.9 0.42 9.1E-06 50.0 8.5 85 172-256 160-266 (497)
416 PRK14526 adenylate kinase; Pro 92.9 0.26 5.6E-06 46.0 6.4 20 177-196 3-22 (211)
417 COG0470 HolB ATPase involved i 92.9 0.48 1E-05 47.5 8.8 42 155-196 3-46 (325)
418 PRK13765 ATP-dependent proteas 92.9 0.25 5.5E-06 53.8 7.1 69 151-222 29-105 (637)
419 PF12780 AAA_8: P-loop contain 92.9 0.46 1E-05 46.0 8.2 74 164-254 22-99 (268)
420 PRK09825 idnK D-gluconate kina 92.8 0.089 1.9E-06 47.6 3.0 23 174-196 3-25 (176)
421 PRK14721 flhF flagellar biosyn 92.8 0.6 1.3E-05 48.1 9.3 24 173-196 190-213 (420)
422 KOG0728 26S proteasome regulat 92.8 0.21 4.5E-06 46.5 5.3 53 154-206 148-215 (404)
423 TIGR00764 lon_rel lon-related 92.8 0.33 7.2E-06 53.0 7.9 69 152-222 17-92 (608)
424 TIGR00176 mobB molybdopterin-g 92.8 0.076 1.7E-06 46.9 2.5 21 176-196 1-21 (155)
425 COG0467 RAD55 RecA-superfamily 92.8 0.13 2.9E-06 49.8 4.4 44 172-217 21-71 (260)
426 COG1224 TIP49 DNA helicase TIP 92.8 0.39 8.5E-06 47.3 7.4 54 151-204 37-99 (450)
427 COG3640 CooC CO dehydrogenase 92.8 0.17 3.7E-06 46.9 4.7 21 176-196 2-22 (255)
428 COG0714 MoxR-like ATPases [Gen 92.7 0.25 5.4E-06 49.7 6.4 59 155-215 26-88 (329)
429 TIGR01039 atpD ATP synthase, F 92.7 0.5 1.1E-05 49.0 8.5 85 172-256 141-249 (461)
430 PRK14738 gmk guanylate kinase; 92.7 0.11 2.4E-06 48.4 3.5 25 172-196 11-35 (206)
431 PRK14737 gmk guanylate kinase; 92.7 0.11 2.4E-06 47.5 3.4 24 173-196 3-26 (186)
432 cd01135 V_A-ATPase_B V/A-type 92.6 0.52 1.1E-05 45.4 8.0 84 172-255 67-177 (276)
433 PRK08472 fliI flagellum-specif 92.6 0.34 7.3E-06 50.1 7.2 82 172-256 155-258 (434)
434 PF02374 ArsA_ATPase: Anion-tr 92.6 0.17 3.8E-06 50.1 5.0 38 175-212 2-46 (305)
435 PRK14723 flhF flagellar biosyn 92.6 0.61 1.3E-05 51.6 9.5 78 174-254 185-273 (767)
436 PRK10867 signal recognition pa 92.6 0.65 1.4E-05 48.2 9.3 24 173-196 99-122 (433)
437 PF13521 AAA_28: AAA domain; P 92.6 0.087 1.9E-06 47.0 2.6 21 177-197 2-22 (163)
438 cd02029 PRK_like Phosphoribulo 92.6 0.3 6.4E-06 46.8 6.2 21 176-196 1-21 (277)
439 KOG1532 GTPase XAB1, interacts 92.5 0.099 2.1E-06 49.3 2.9 24 173-196 18-41 (366)
440 cd01672 TMPK Thymidine monopho 92.5 0.096 2.1E-06 48.2 3.0 21 176-196 2-22 (200)
441 TIGR02546 III_secr_ATP type II 92.5 0.69 1.5E-05 48.0 9.4 84 172-255 143-246 (422)
442 KOG1514 Origin recognition com 92.5 0.86 1.9E-05 49.0 10.0 101 153-255 396-519 (767)
443 PF03308 ArgK: ArgK protein; 92.5 0.17 3.7E-06 47.9 4.4 36 161-196 14-51 (266)
444 TIGR01287 nifH nitrogenase iro 92.5 0.092 2E-06 51.4 2.9 22 175-196 1-22 (275)
445 PRK14953 DNA polymerase III su 92.5 0.17 3.6E-06 53.6 5.0 46 151-196 14-60 (486)
446 TIGR02173 cyt_kin_arch cytidyl 92.5 0.1 2.3E-06 46.8 3.0 21 176-196 2-22 (171)
447 PF03266 NTPase_1: NTPase; In 92.5 0.099 2.1E-06 46.8 2.8 20 177-196 2-21 (168)
448 PF01926 MMR_HSR1: 50S ribosom 92.4 0.12 2.6E-06 43.0 3.2 20 177-196 2-21 (116)
449 PF10443 RNA12: RNA12 protein; 92.4 0.46 1E-05 48.4 7.7 64 158-221 1-71 (431)
450 PF10662 PduV-EutP: Ethanolami 92.4 0.11 2.4E-06 44.7 2.9 22 175-196 2-23 (143)
451 PRK09280 F0F1 ATP synthase sub 92.4 0.5 1.1E-05 49.2 8.1 85 172-256 142-250 (463)
452 PF11868 DUF3388: Protein of u 92.4 0.27 5.8E-06 42.4 5.0 38 169-206 49-88 (192)
453 PRK03731 aroL shikimate kinase 92.4 0.1 2.3E-06 46.9 2.9 22 175-196 3-24 (171)
454 PRK08099 bifunctional DNA-bind 92.4 0.12 2.5E-06 53.3 3.5 26 171-196 216-241 (399)
455 cd03116 MobB Molybdenum is an 92.3 0.12 2.7E-06 45.7 3.2 22 175-196 2-23 (159)
456 COG0703 AroK Shikimate kinase 92.3 0.1 2.3E-06 46.3 2.7 22 175-196 3-24 (172)
457 TIGR03574 selen_PSTK L-seryl-t 92.3 0.098 2.1E-06 50.4 2.8 20 177-196 2-21 (249)
458 PLN02796 D-glycerate 3-kinase 92.3 0.11 2.4E-06 51.7 3.0 24 173-196 99-122 (347)
459 PRK15453 phosphoribulokinase; 92.3 0.13 2.8E-06 49.6 3.4 24 173-196 4-27 (290)
460 COG0003 ArsA Predicted ATPase 92.3 0.24 5.1E-06 49.2 5.4 41 174-214 2-49 (322)
461 KOG0744 AAA+-type ATPase [Post 92.3 0.47 1E-05 46.2 7.1 23 174-196 177-199 (423)
462 PF14532 Sigma54_activ_2: Sigm 92.3 0.11 2.5E-06 44.8 2.8 40 157-196 2-43 (138)
463 TIGR03305 alt_F1F0_F1_bet alte 92.3 0.52 1.1E-05 48.9 8.0 84 173-256 137-244 (449)
464 PRK06620 hypothetical protein; 92.2 0.11 2.4E-06 48.6 3.0 22 175-196 45-66 (214)
465 PF06068 TIP49: TIP49 C-termin 92.2 0.32 6.9E-06 48.5 6.1 46 151-196 22-72 (398)
466 cd03225 ABC_cobalt_CbiO_domain 92.2 0.13 2.8E-06 48.1 3.4 24 173-196 26-49 (211)
467 cd01983 Fer4_NifH The Fer4_Nif 92.2 0.11 2.3E-06 41.3 2.5 21 176-196 1-21 (99)
468 PLN02348 phosphoribulokinase 92.2 0.13 2.9E-06 52.0 3.5 25 172-196 47-71 (395)
469 PRK12597 F0F1 ATP synthase sub 92.2 0.49 1.1E-05 49.3 7.8 84 172-255 141-248 (461)
470 cd01134 V_A-ATPase_A V/A-type 92.2 1 2.2E-05 45.0 9.5 83 172-254 155-264 (369)
471 PRK06647 DNA polymerase III su 92.2 0.18 3.9E-06 54.3 4.8 45 152-196 15-60 (563)
472 PF03215 Rad17: Rad17 cell cyc 92.2 0.19 4.2E-06 53.4 5.0 43 154-196 20-67 (519)
473 cd02040 NifH NifH gene encodes 92.2 0.2 4.4E-06 48.8 4.8 36 175-210 2-44 (270)
474 COG1126 GlnQ ABC-type polar am 92.2 0.17 3.8E-06 46.3 3.9 24 173-196 27-50 (240)
475 PRK14086 dnaA chromosomal repl 92.2 0.4 8.7E-06 51.6 7.3 22 175-196 315-336 (617)
476 PRK08356 hypothetical protein; 92.2 0.14 3E-06 47.3 3.5 23 174-196 5-27 (195)
477 TIGR00041 DTMP_kinase thymidyl 92.2 0.31 6.7E-06 44.8 5.9 22 175-196 4-25 (195)
478 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.1 0.13 2.8E-06 48.3 3.3 24 173-196 29-52 (218)
479 PLN02674 adenylate kinase 92.1 0.37 8E-06 45.9 6.3 32 174-205 31-62 (244)
480 TIGR01040 V-ATPase_V1_B V-type 92.1 0.67 1.5E-05 48.0 8.6 84 172-255 139-258 (466)
481 KOG0989 Replication factor C, 92.1 0.22 4.9E-06 48.0 4.8 48 149-196 32-79 (346)
482 PRK06761 hypothetical protein; 92.1 0.12 2.6E-06 50.2 3.0 22 175-196 4-25 (282)
483 PRK14493 putative bifunctional 92.1 0.13 2.8E-06 50.0 3.2 22 175-196 2-23 (274)
484 COG1120 FepC ABC-type cobalami 92.0 0.14 3E-06 48.9 3.3 25 172-196 26-50 (258)
485 PRK09435 membrane ATPase/prote 92.0 0.25 5.5E-06 49.3 5.3 35 162-196 42-78 (332)
486 PLN02924 thymidylate kinase 92.0 0.77 1.7E-05 43.2 8.3 23 174-196 16-38 (220)
487 COG1763 MobB Molybdopterin-gua 92.0 0.13 2.8E-06 45.4 2.8 23 174-196 2-24 (161)
488 cd02022 DPCK Dephospho-coenzym 92.0 0.11 2.3E-06 47.2 2.5 21 176-196 1-21 (179)
489 TIGR02655 circ_KaiC circadian 92.0 0.81 1.8E-05 48.7 9.4 33 173-205 20-60 (484)
490 TIGR00750 lao LAO/AO transport 92.0 0.18 4E-06 49.9 4.3 26 171-196 31-56 (300)
491 cd00984 DnaB_C DnaB helicase C 92.0 1.2 2.6E-05 42.5 9.9 43 173-217 12-62 (242)
492 PRK07133 DNA polymerase III su 92.0 0.17 3.8E-06 55.4 4.4 45 152-196 17-62 (725)
493 PRK12338 hypothetical protein; 92.0 0.17 3.6E-06 50.0 3.9 30 174-203 4-33 (319)
494 PRK10416 signal recognition pa 92.0 0.14 3.1E-06 50.9 3.5 24 173-196 113-136 (318)
495 TIGR01166 cbiO cobalt transpor 91.9 0.14 3.1E-06 46.9 3.3 24 173-196 17-40 (190)
496 cd03229 ABC_Class3 This class 91.9 0.15 3.2E-06 46.3 3.3 24 173-196 25-48 (178)
497 TIGR00960 3a0501s02 Type II (G 91.9 0.14 3E-06 48.1 3.3 24 173-196 28-51 (216)
498 cd04139 RalA_RalB RalA/RalB su 91.9 0.13 2.7E-06 45.6 2.8 21 176-196 2-22 (164)
499 CHL00059 atpA ATP synthase CF1 91.9 0.5 1.1E-05 49.3 7.4 85 172-256 139-245 (485)
500 PF00625 Guanylate_kin: Guanyl 91.9 0.17 3.8E-06 46.0 3.8 23 174-196 2-24 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-64 Score=548.75 Aligned_cols=513 Identities=26% Similarity=0.405 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------------hccc
Q 045507 35 ESLKAEMEKLRDESTRIQRRVSEAKAKGEEIEEKVKKWVIRTDKIIDEAAKFIEDEETN-----------------NKRC 97 (566)
Q Consensus 35 ~~~~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~a~~~eD~ld~~~~~-----------------~~~~ 97 (566)
.+..+.+..|+..|..++.++++++.++. ....+..|...+++++|++||.++.+... .+-|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 34556778888888888899999998874 46889999999999999999998864311 0112
Q ss_pred ccCCC-cChhHHhHHHHHHHHHHHHHHHHHHhcCCcceeec-cCCCccccccCCCCCCCccchHHHHHHHHHHHhcCCce
Q 045507 98 LKGLC-PDFKTRYQLSKKAETELKAIVELREEAGRFDRISY-RTFPEEIWLKPHKGYESFESRLSTLKAIQNALSDLNVS 175 (566)
Q Consensus 98 ~~~~~-~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~ 175 (566)
+.+.+ ......+.+++++.++.+.++.+. .++.|..+.. ..++......|...... +|.++.++++.+.|.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCC
Confidence 22222 223333445555555555555554 2233333332 11222334444444444 89999999999999988889
Q ss_pred EEEEEecCCCcHHHHHHHHhc----------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc---chHHHHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR----------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK---VETRRANRLYERLKR 242 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~----------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~---~~~~~~~~l~~~l~~ 242 (566)
+++|+||||+||||||++++| .++||+||+.|+...++++|+..++...... ...+....+.+.|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~- 259 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE- 259 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-
Confidence 999999999999999999999 5799999999999999999999888744433 33567778888888
Q ss_pred CCeEEEEEeCCCCcccccccccccCCCCCCC-------------------------------------------ccccCc
Q 045507 243 EKKILIVLDNIWKHVDLESIGIPFGDEHKGY-------------------------------------------DDVENL 279 (566)
Q Consensus 243 ~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g~-------------------------------------------~~~~~~ 279 (566)
+|||+|||||||+..+|+.++.++|...+|| .....+
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence 5999999999999999999999999998887 122234
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCccchhhhhhhhhhHHhhhc-----------
Q 045507 280 KLKSTAIDVAKACGGLPIALTTIGRAMRNK-SVLEWKNALRELRIRTPSVVNFEKVRAGCVRATEETFS----------- 347 (566)
Q Consensus 280 ~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~~l~lsy~----------- 347 (566)
.++++|++++++|+|+|||++++|+.|+.| ++++|+++.+.+.+....+. .+..+.++++|++||+
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~--~~~~~~i~~iLklSyd~L~~~lK~CFL 417 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF--SGMEESILPILKLSYDNLPEELKSCFL 417 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC--CchhhhhHHhhhccHhhhhHHHHHHHH
Confidence 489999999999999999999999999987 88999999999887754443 4457889999999999
Q ss_pred --cCCCCCCcchh-hHHHHHHhhhccccccccHHHHHHHHHHHHHHHhhhchhh-----------------HHHHHHhhc
Q 045507 348 --ALYSSGIFYFN-FILFKCCMGLGILQRANKMEDAYNKLHALLHELKDSCLLV-----------------EDVAISIAC 407 (566)
Q Consensus 348 --~l~~p~~~~~~-~~L~~~wia~g~~~~~~~~~~~~~~~~~li~~L~~~~ll~-----------------~dl~~~~~~ 407 (566)
++| |+||+|+ ++|+.+|+||||+++.+..+.+++.+++|+.+|+.+||++ ||+|..+++
T Consensus 418 ycalF-PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 418 YCALF-PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred hhccC-CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 456 8999998 8999999999999886656677888999999999999987 566777777
Q ss_pred -----ccCceEEEeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCc
Q 045507 408 -----RDQNVFLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLK 482 (566)
Q Consensus 408 -----~e~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr 482 (566)
+++.++. .+......+....+...|+++++.+.+..++....+++|++|.+.++.. ....++..+|..++.||
T Consensus 497 ~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 497 DFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLR 574 (889)
T ss_pred cccccccceEEE-CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceE
Confidence 5553322 2223344555666788999999999999888888899999999988752 15688888899999999
Q ss_pred EEEecCC-ccccCChhhhcccccceeeccCcccCC-ccccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccC
Q 045507 483 DVDMARM-WLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 483 ~L~l~~~-~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
+||+++| .+.+||.+|++|.|||||+++++.++. |.++++|.+|.+|++..+ .+..+|..+..|++||+|.+..
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 9999987 789999999999999999999999999 999999999999999998 5666777778899999998865
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-37 Score=359.73 Aligned_cols=388 Identities=22% Similarity=0.284 Sum_probs=247.1
Q ss_pred CCCCCccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc-------ceEEE-----EeccC---------
Q 045507 150 KGYESFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFS-----EVSQN--------- 206 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv-----~v~~~--------- 206 (566)
.+..+++||+..++++..+|. .+++++|+||||||+||||||+++|+ ..+|+ ..+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccc
Confidence 345679999999999998875 56789999999999999999999998 33443 22110
Q ss_pred CC-HHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccccCCCCCCC------------
Q 045507 207 PN-IKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKHVDLESIGIPFGDEHKGY------------ 273 (566)
Q Consensus 207 ~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g~------------ 273 (566)
++ ...++..++..+........ .....+++.+. +||+||||||||+..+|+.+.....+.+.|+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 22344555554432211110 01245667777 4899999999999988888766554444454
Q ss_pred -----------------------------ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 045507 274 -----------------------------DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRELRIR 324 (566)
Q Consensus 274 -----------------------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~ 324 (566)
...++..+.+++++|+++|+|+|||++++|++|++++..+|+.+++++...
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG 417 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 122344577899999999999999999999999999999999999998753
Q ss_pred CCCCccchhhhhhhhhhHHhhhccCCCCCCcchh-----------hHHHHHHhhhccccccccHHHHHHHHHHHHHHHhh
Q 045507 325 TPSVVNFEKVRAGCVRATEETFSALYSSGIFYFN-----------FILFKCCMGLGILQRANKMEDAYNKLHALLHELKD 393 (566)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~lsy~~l~~p~~~~~~-----------~~L~~~wia~g~~~~~~~~~~~~~~~~~li~~L~~ 393 (566)
. ..++.++|++||++|.++....++ .+.+..|++.+.+. ....++.|++
T Consensus 418 ~---------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~-----------~~~~l~~L~~ 477 (1153)
T PLN03210 418 L---------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLD-----------VNIGLKNLVD 477 (1153)
T ss_pred c---------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCC-----------chhChHHHHh
Confidence 2 346799999999988632222211 12333343333221 1223777888
Q ss_pred hchhh------------HHHHHHhhcccC-----ceEEEeCcc-----------------------cccC--C--ccccc
Q 045507 394 SCLLV------------EDVAISIACRDQ-----NVFLVRNED-----------------------VWKW--P--NEDAL 429 (566)
Q Consensus 394 ~~ll~------------~dl~~~~~~~e~-----~~~~~~~~~-----------------------~~~~--~--~~~~~ 429 (566)
+||++ ||+++.++.++. ..+..+... ..+. . ....+
T Consensus 478 ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m 557 (1153)
T PLN03210 478 KSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557 (1153)
T ss_pred cCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence 88875 566666664431 011111000 0000 0 00123
Q ss_pred ccccEEEeecCCCC-------CCCCCC-CC-CccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhc
Q 045507 430 KQCHAISLLNSSIP-------ELPEGL-EC-PHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDL 500 (566)
Q Consensus 430 ~~~r~l~l~~~~~~-------~~~~~~-~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~ 500 (566)
.+++.+.+..+... .+|... .+ ++||.|.+.++. ...+|..+ .+.+|+.|+++++.+..+|..+..
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~---l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP---LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC---CCCCCCcC--CccCCcEEECcCcccccccccccc
Confidence 34444444332110 122221 12 346666665543 34555544 456777777777777777777777
Q ss_pred ccccceeeccCcc-cCCccccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 501 LVNLQILCLHQYM-LGDIAIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 501 L~~L~~L~L~~~~-l~~p~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+++|++|+|++|. +...+.++.+++|++|+|.+| .+..+|.++++|++|++|++++|+.+..+|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 7788888887765 555445777777888888777 5677777777777777777777777777775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=1.8e-29 Score=250.14 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCCCc-
Q 045507 158 RLSTLKAIQNALSD--LNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC- 225 (566)
Q Consensus 158 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~- 225 (566)
||.++++|.+.|.. ++.++|+|+||||+||||||+++|+ .++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999996 7899999999999999999999998 57999999999999999999999987733
Q ss_pred ---ccchHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccccccCCCCCCC-----------------------------
Q 045507 226 ---EKVETRRANRLYERLKREKKILIVLDNIWKHVDLESIGIPFGDEHKGY----------------------------- 273 (566)
Q Consensus 226 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g~----------------------------- 273 (566)
..+.......+.+.+.. +++||||||||+...|+.+...++....|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23455678888888885 799999999999999987766655443333
Q ss_pred -----------c--c-ccCccchHHHHHHHHHhCCCchHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCccchhhhhhh
Q 045507 274 -----------D--D-VENLKLKSTAIDVAKACGGLPIALTTIGRAMRNK-SVLEWKNALRELRIRTPSVVNFEKVRAGC 338 (566)
Q Consensus 274 -----------~--~-~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 338 (566)
. . .......+.+++|+++|+|+||||+++|++|+.+ +..+|..+++.+........ .....+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~---~~~~~~ 236 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR---DYDRSV 236 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS---GSCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccc
Confidence 1 1 2345667889999999999999999999999754 88999999988776543211 136788
Q ss_pred hhhHHhhhc-------------cCCCCCCcchh-hHHHHHHhhhcccccc
Q 045507 339 VRATEETFS-------------ALYSSGIFYFN-FILFKCCMGLGILQRA 374 (566)
Q Consensus 339 ~~~l~lsy~-------------~l~~p~~~~~~-~~L~~~wia~g~~~~~ 374 (566)
..++.+||+ ++| |.++.|+ +.++++|+++||++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f-~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIF-PEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGS-GTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCC-CCCceECHHHHHHHHHHCCCCccc
Confidence 999999999 445 7888887 8999999999999764
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=5.7e-15 Score=126.16 Aligned_cols=138 Identities=32% Similarity=0.474 Sum_probs=117.7
Q ss_pred CcccccccccEEEeecCCCCCCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhc
Q 045507 424 PNEDALKQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDL 500 (566)
Q Consensus 424 ~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~ 500 (566)
|+.....++..+.+..|.++.+|.. +.+++||.|.+.-+. ...+|..+ +.++-|.+||+++|++.+ +|..+-.
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---l~~lprgf-gs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---LNILPRGF-GSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---hhcCcccc-CCCchhhhhhccccccccccCCcchhH
Confidence 3455677888888888988888766 468899999886554 34556554 889999999999997764 8888878
Q ss_pred ccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCCC
Q 045507 501 LVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAPN 566 (566)
Q Consensus 501 L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~~ 566 (566)
+..||-|.|+.|.+.. |+.+++|++||.|.++.|.+-+||.++|.|+.|+.|++.| +++..+|++
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence 8899999999999888 9999999999999999999999999999999999999999 899999974
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=2.1e-13 Score=116.61 Aligned_cols=137 Identities=21% Similarity=0.302 Sum_probs=121.2
Q ss_pred CcccccccccEEEeecCCCCCCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccc
Q 045507 424 PNEDALKQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLV 502 (566)
Q Consensus 424 ~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~ 502 (566)
+....+.+++++.++.|.+..+|.. ..+.+|+.|.++++. ...+|.++ +.++.||.|+++-|.+..+|..+|.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch---hhhcChhh-hhchhhhheecchhhhhcCccccCCCc
Confidence 3444567888999999999877655 478999999998876 67888877 789999999999999999999999999
Q ss_pred ccceeeccCcccCC---ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 503 NLQILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 503 ~L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
-|..|+|.+|++.+ |..+..+.-|+.|.|..|.++-+|.++|+|++||.|.++. +.+-++|+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpk 167 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPK 167 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcH
Confidence 99999999999877 8888888999999999999999999999999999999999 78888886
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.09 E-value=3e-10 Score=131.63 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=68.7
Q ss_pred cccccEEEeecCCCC-CCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc-cCChhhhcccccc
Q 045507 429 LKQCHAISLLNSSIP-ELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF-SLPSSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~-~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~ 505 (566)
..+++++.++.|.+. .+|.. ..+++|++|.+.++.. ...+|..+ .++++|++|++++|.+. .+|..++++++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l--~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL--VGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc--cccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 345555555555553 22322 2455566666655542 22344332 45566666666665544 3455666666666
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEEeccCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~c 557 (566)
+|+|++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 66666665543 555666666666666666443 45666666666666666664
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.02 E-value=6.8e-11 Score=114.33 Aligned_cols=123 Identities=23% Similarity=0.365 Sum_probs=95.1
Q ss_pred eecCCCCCCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccC
Q 045507 437 LLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLG 515 (566)
Q Consensus 437 l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~ 515 (566)
++.|.+..+|.. ..+++|..|.+++|. ...+|.++ +.+..||.|+++.|.|..+|..+..+.-|..+-.+++.+.
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~---Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNL---LNDLPEEM-GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccch---hhhcchhh-hhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence 344444444433 357777777777665 45777776 4566688888888888888888777777777777777777
Q ss_pred C--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 516 D--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 516 ~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
. |+.++++.+|.+|||.+|.+.++|..+|++++|+||.+.| +.++ .|+
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~g-Npfr-~Pr 544 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDG-NPFR-QPR 544 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecC-CccC-CCH
Confidence 7 5569999999999999999999999999999999999999 6666 554
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.98 E-value=1.6e-09 Score=125.77 Aligned_cols=128 Identities=26% Similarity=0.405 Sum_probs=66.6
Q ss_pred ccccccEEEeecCCCC-CCCCC-C-CCCccceEEecccccccccCCCh---------------------HHHhcCccCcE
Q 045507 428 ALKQCHAISLLNSSIP-ELPEG-L-ECPHLDFLLMVCKDTLIETNIPE---------------------KFFSRIKKLKD 483 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~-~~~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~---------------------~~~~~l~~Lr~ 483 (566)
..++++.+.+++|.+. .+|.. . .+++|+.|.+.++.. ...+|. ..+..+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc--ccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 3557777888777765 35543 2 567788887766542 112221 11234445555
Q ss_pred EEecCCccc-cCChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEEeccCC
Q 045507 484 VDMARMWLF-SLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 484 L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~c 557 (566)
|++++|.+. .+|.+++++++|++|+|++|.+.. |..++++.+|++|+|++|.+. .+|..++++++|++|++++|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 555554433 344445555555555555554433 445555555555555555333 45555555555555555554
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.2e-09 Score=97.71 Aligned_cols=125 Identities=20% Similarity=0.260 Sum_probs=56.8
Q ss_pred ccccccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhh-hcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~L~~L~ 505 (566)
.+.+.+.+++.+|.++.+.... .+.+|+.|.+++|. ...+.+ +..++.|+.|++++|.+++++..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~---I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ---ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS-----S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCC---CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3446799999999998876655 57899999999887 556654 467999999999999999998766 4689999
Q ss_pred eeeccCcccCC---ccccccCccCcEEeccCCCCCccch----hhcCCCCCCEEeccCC
Q 045507 506 ILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPE----ELGQLTKLRQLDLVNC 557 (566)
Q Consensus 506 ~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~c 557 (566)
.|++++|+|.. ...+..+++|++|+|.+|.+..-+. -+..+++|+.||-...
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 99999999876 5667789999999999998876654 3789999999986543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.93 E-value=6.2e-11 Score=120.40 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=86.3
Q ss_pred cccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCc--cccCChhhhccccccee
Q 045507 431 QCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMW--LFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~~~lp~~i~~L~~L~~L 507 (566)
++|++++++|.+..+.-.. .+.+|++|.++.|. ...+|..+ ++++.|+.|.+.+|. ++.+|+.||+|.+|..+
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ---Lt~LP~av-cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ---LTVLPDAV-CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccch---hccchHHH-hhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 4455555555554433222 34455555555544 34555544 567777777776664 44577777777777777
Q ss_pred eccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 508 CLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 508 ~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
...+|++.- |+++|.+..|+.|.|+.|.+.+||+.|.-|+.|..|+++.+++|---|
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 777777776 778888888888888888888888888888888888888877764433
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.92 E-value=1.6e-10 Score=117.39 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=119.6
Q ss_pred cccccccccEEEeecCCCCCCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccc
Q 045507 425 NEDALKQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVN 503 (566)
Q Consensus 425 ~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~ 503 (566)
+.+.+.+++-+.++.|++..+|.. ..+++||.|.+++|. +..+.-.. ....+|..|++|.|.+..||+.+|+|+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~---iteL~~~~-~~W~~lEtLNlSrNQLt~LP~avcKL~k 292 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK---ITELNMTE-GEWENLETLNLSRNQLTVLPDAVCKLTK 292 (1255)
T ss_pred chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc---eeeeeccH-HHHhhhhhhccccchhccchHHHhhhHH
Confidence 345677899999999999888876 488999999999986 44444333 6778999999999999999999999999
Q ss_pred cceeeccCcccCC---ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 504 LQILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 504 L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|+.|.+.+|++.- |+.||+|.+|+.+...+|+++-+|++++.+.+|+.|.|+. ++|-.+|+
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPe 356 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPE 356 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechh
Confidence 9999999998654 9999999999999999999999999999999999999986 89988886
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.91 E-value=3.8e-09 Score=123.28 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=111.3
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccCChhhhccccccee
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L~~L 507 (566)
+.++|.+.+..+.+..+|......+|+.|.+.++. ...++..+ ..+++|++|+++++ .+..+|. ++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~---l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK---LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc---cccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 46789999999888888888888899999998765 45666654 67999999999987 4677774 7889999999
Q ss_pred eccCcc-cCC-ccccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 508 CLHQYM-LGD-IAIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 508 ~L~~~~-l~~-p~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+|. +.. |.++++|.+|++|++++| .+..+|..+ ++++|++|++++|+.+..+|.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 999987 666 999999999999999998 788999876 799999999999998888774
No 13
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=2.3e-10 Score=106.64 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=112.2
Q ss_pred cccccccEEEeecCCCCCCCCCCC-CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 427 DALKQCHAISLLNSSIPELPEGLE-CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
..++.+..+.+++|.+..+..+.. .|++|.|.++.|. ...+.. ...+.+|..||+|+|.+.++-.+=.+|-|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc---eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 346788889999999988877764 5999999999886 333333 3678999999999999888776667788999
Q ss_pred eeeccCcccCCccccccCccCcEEeccCCCCCccc--hhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLP--EELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
.|.|.+|.+...+.+++|.+|.+||+++|+++++- .+||+|++|.+|.|.+ +.++.+|.
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD 416 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence 99999999999999999999999999999888774 4799999999999999 67777663
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.83 E-value=1.6e-10 Score=111.88 Aligned_cols=122 Identities=27% Similarity=0.349 Sum_probs=77.3
Q ss_pred cccccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhh-cccccce
Q 045507 429 LKQCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSID-LLVNLQI 506 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~-~L~~L~~ 506 (566)
++.+.++....|.+..+|... .+.+|.-|++..+. ...+|. |..+..|..|+++.|.++.+|..++ +|.+|.+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk---i~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK---IRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc---cccCCC--CCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 455566666666666665543 45556666665543 344442 3556666666666666666666555 6666777
Q ss_pred eeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 507 LCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 507 L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
|||+.|++++ |..++.|++|++||+++|.+..+|-++|+| +|+.|.+.|
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 7777777666 667777777777777776666777777776 666666666
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.77 E-value=3.6e-08 Score=108.17 Aligned_cols=118 Identities=21% Similarity=0.300 Sum_probs=77.0
Q ss_pred EEEeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc
Q 045507 413 FLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
..+++.....+|. ..+..++.+.+++|++..+|... .++|+.|.+.+|. ...+|..+. .+|+.|++++|.+.
T Consensus 183 L~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~---LtsLP~~l~---~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 183 LRLKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ---LTSIPATLP---DTIQEMELSINRIT 254 (754)
T ss_pred EEeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc---cccCChhhh---ccccEEECcCCccC
Confidence 3444444444443 24567888888888888777543 3578888887765 456666442 35777777777777
Q ss_pred cCChhhhcccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccchh
Q 045507 493 SLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEE 542 (566)
Q Consensus 493 ~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 542 (566)
.+|..+. .+|++|++++|++.. |..+. .+|++|++++|++..+|..
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc
Confidence 7776654 467777777777766 55543 4677777777766666543
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.67 E-value=1.5e-06 Score=84.99 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=59.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEE-eccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHH----HHH
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSE-VSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLY----ERL 240 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~-v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~----~~l 240 (566)
.....++.|+|.+|+||||+++.+++ ...+.. +....+..+++..|+..++.+............+. ...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999998 122222 23345778889999998876544333233333333 333
Q ss_pred hcCCeEEEEEeCCCCcc
Q 045507 241 KREKKILIVLDNIWKHV 257 (566)
Q Consensus 241 ~~~kr~LlVlDdv~~~~ 257 (566)
..+++++||+||++...
T Consensus 120 ~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLT 136 (269)
T ss_pred hCCCCeEEEEECcccCC
Confidence 34678999999998753
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=3.5e-07 Score=100.09 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=51.2
Q ss_pred eEEEeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHH----------------H
Q 045507 412 VFLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKF----------------F 475 (566)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~----------------~ 475 (566)
...+....+...|. ..+.+++.|++..|++..+|.. .++|++|.+.+|. ...+|... -
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~---LtsLP~lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ---LTSLPVLPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc---cCcccCcccccceeeccCCchhhhh
Confidence 34444444444443 2344677777777777766642 4677777776654 33443210 0
Q ss_pred hcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC
Q 045507 476 SRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD 516 (566)
Q Consensus 476 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~ 516 (566)
..+..|+.|++++|.++.+|.. +++|++|++++|++..
T Consensus 279 ~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 279 ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred hchhhcCEEECcCCcccccccc---ccccceeECCCCcccc
Confidence 0122344555555555555542 3456677777766555
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.63 E-value=6.6e-09 Score=105.31 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=77.2
Q ss_pred cccccEEEeecCCCCCCCCCC--CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~ 505 (566)
...++++.++.|.+..+.... -+++|..|.++.|. ...++++.|..+..|..|.|+.|.+..+- ..+..+.+|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~---i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR---ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccc---cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 344555555555554433221 24556666665554 45555555556666666666666665543 2345566777
Q ss_pred eeeccCcccCC-----ccccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCCCCccC
Q 045507 506 ILCLHQYMLGD-----IAIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 506 ~L~L~~~~l~~-----p~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~~l 563 (566)
.|+|++|.+.. -..+..|++|+.|++.+|+++.+|. .|..|..|+||+|.+ +.+.++
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD-NAIASI 431 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC-Ccceee
Confidence 77777775433 2234557777777777777777764 477777777777776 454444
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=4.2e-08 Score=87.85 Aligned_cols=114 Identities=23% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-cc
Q 045507 440 SSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IA 518 (566)
Q Consensus 440 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~ 518 (566)
+-++..+......+++.|.+.++. ...+. .+-..+.+|+.|++++|.++.++ .+..|++|+.|++++|.|+. .+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~---I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQ---ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccc---ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 334445555556688999999886 34443 23225789999999999999986 57789999999999999998 45
Q ss_pred cc-ccCccCcEEeccCCCCCccc--hhhcCCCCCCEEeccCCC
Q 045507 519 II-GKLKNLEILSIWGPDIKTLP--EELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 519 ~i-~~L~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~c~ 558 (566)
.+ ..+++|++|++++|.+..+- ..+..+++|++|++.+++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 55 46899999999999766542 457889999999999843
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=1.5e-07 Score=102.66 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=90.7
Q ss_pred ccceEEecccccccccCCChHHHhcCccCcEEEecCCccc-cCChhhhcccccceeeccCcccCC--ccccccCccCcEE
Q 045507 453 HLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF-SLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEIL 529 (566)
Q Consensus 453 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L 529 (566)
.++.|.+.++.. ...+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..+++|.+|++|
T Consensus 419 ~v~~L~L~~n~L--~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL--RGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc--cccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 467788877664 44666654 78999999999999987 689999999999999999999876 8899999999999
Q ss_pred eccCCCCC-ccchhhcCC-CCCCEEeccCCCCCccCC
Q 045507 530 SIWGPDIK-TLPEELGQL-TKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 530 ~l~~~~l~-~lP~~i~~L-~~L~~L~l~~c~~l~~lP 564 (566)
+|++|.+. .+|..++.+ .++..+++.++..+...|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999766 899988764 577889888877666555
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=2.3e-07 Score=101.99 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=99.9
Q ss_pred cccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeecc
Q 045507 431 QCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLH 510 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 510 (566)
+...+.+..+++..+|... .++|+.|.+.+|. ...+|..++ .+|+.|++++|.++.+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~---LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNE---LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCC---CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 4567888888887777643 3579999998875 567887664 589999999999999998764 589999999
Q ss_pred CcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 511 QYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 511 ~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+.. |..+. .+|++|++++|++..+|..+. ++|++|++++ +++..+|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~ 300 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPA 300 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCcc
Confidence 999888 77664 589999999999999998775 5899999999 58888875
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.52 E-value=2.5e-08 Score=106.50 Aligned_cols=126 Identities=22% Similarity=0.355 Sum_probs=105.1
Q ss_pred cccccEEEeecCCCCC--CCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 429 LKQCHAISLLNSSIPE--LPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
...+..+++.+|.+.+ +|....+.+|+.|.+..|. ...+|.+.+.++..|..|+||||.++.+|..+..+..|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 3455667777777743 4555678999999999886 6789999999999999999999999999999999999999
Q ss_pred eeccCcccCC-ccccccCccCcEEeccCCCCC--ccchhhcCCCCCCEEeccCCCC
Q 045507 507 LCLHQYMLGD-IAIIGKLKNLEILSIWGPDIK--TLPEELGQLTKLRQLDLVNCFQ 559 (566)
Q Consensus 507 L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L~~L~l~~c~~ 559 (566)
|...+|.+.. | .+..+..|+++|++.|++. .+|...-. ++|++||++|+++
T Consensus 435 L~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9999999888 6 8889999999999999765 44543333 8999999999764
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.52 E-value=9.6e-08 Score=97.09 Aligned_cols=130 Identities=22% Similarity=0.320 Sum_probs=93.2
Q ss_pred ccccccEEEeecCCCCCCCCCCC-CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEGLE-CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~ 505 (566)
...+++.+++..|.+..+|.... ..+|..|.+..|- +.++.++-...++.||+||||.|.|.++| .++..-.++.
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccc---cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 35677778888888877877654 4568888887665 55666666677778888888888888776 4455556788
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCc
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~ 561 (566)
+|+|++|.|+. -..+..|.+|-+|.|+.|.+.+||.- |..|++|+.|+|.. ++++
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~ir 234 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIR 234 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-ccee
Confidence 88888888776 45677777888888888888877754 44577777777765 4443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=1.7e-08 Score=102.14 Aligned_cols=132 Identities=24% Similarity=0.310 Sum_probs=112.4
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
.....+.+++++.|.+..+|...-.--|+.|.+.+|. ...+|.++ +.+..|..||.+.|.+..+|..++.|..|+.
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk---l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK---LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc---cccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 3456677888888888887766555568888888776 67888887 4888999999999999999999999999999
Q ss_pred eeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 507 LCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 507 L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|.++.|.+.. |+.++ --.|..||+++|++..+|-+|.+|+.|++|.|.+ +.|.+-|
T Consensus 194 l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len-NPLqSPP 250 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN-NPLQSPP 250 (722)
T ss_pred HHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeecc-CCCCCCh
Confidence 9999999877 88888 5578999999999999999999999999999987 7777655
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.48 E-value=1.4e-06 Score=90.40 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=76.9
Q ss_pred CCCccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHH
Q 045507 152 YESFESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
...+.||++++++|...+. ......+.|+|.+|+|||++++.+++ ..++++.....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3568899999999998874 23446678999999999999999987 1344555555677888999999
Q ss_pred HcCCC-Cc--ccchHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045507 219 KLGLV-SC--EKVETRRANRLYERLKR-EKKILIVLDNIWKH 256 (566)
Q Consensus 219 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 256 (566)
++... .+ ..+..+....+.+.+.. ++..+||+|+++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 88652 21 12334456666676653 45689999999864
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.44 E-value=2.3e-06 Score=87.82 Aligned_cols=104 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCccchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALSD----LNVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~ 215 (566)
..+.||++++++|...+.. .....+.|+|++|+|||++++.+++ ..+|++.....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999998862 3446789999999999999999986 1345555555677888999
Q ss_pred HHHHcC---CCCcc--cchHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 216 IAEKLG---LVSCE--KVETRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 216 i~~~l~---~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
|+.++. ...+. .+..+....+.+.+. .+++++||||+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 998883 32221 123344455666664 346789999999876
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=1.2e-06 Score=75.38 Aligned_cols=84 Identities=27% Similarity=0.371 Sum_probs=64.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc-cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE-KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 239 (566)
+-+++.|+|.+|+|||++++.+.+ .++|+++....+...+...|+..++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357899999999999999998877 347888887779999999999999887666 4556667888888
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045507 240 LKREKKILIVLDNIWKH 256 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~~ 256 (566)
+...+..+||+|++...
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 87756679999998653
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=4.6e-07 Score=99.16 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=91.5
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceee
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILC 508 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 508 (566)
+.+++.|.+++|.+..+|.. .++|+.|.+.+|. ...+|. .+.+|+.|++++|.+..+|... .+|+.|+
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~---L~~LP~----l~~~L~~LdLs~N~Lt~LP~l~---s~L~~Ld 408 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR---LTSLPA----LPSGLKELIVSGNRLTSLPVLP---SELKELM 408 (788)
T ss_pred ccccceEecCCCccCCCCCC--Ccccceehhhccc---cccCcc----cccccceEEecCCcccCCCCcc---cCCCEEE
Confidence 35778888888888777653 3567777776654 345554 2357899999999999888643 5799999
Q ss_pred ccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCc
Q 045507 509 LHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 509 L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~ 561 (566)
+++|.++. |.. +.+|+.|++++|.+..+|.+++++++|+.|+|++ +++.
T Consensus 409 LS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 409 VSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG-NPLS 458 (788)
T ss_pred ccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCC-CCCC
Confidence 99999888 643 3578889999999999999999999999999999 4554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=6.8e-09 Score=105.04 Aligned_cols=109 Identities=27% Similarity=0.395 Sum_probs=74.3
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-ccccccCccCcE
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEI 528 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 528 (566)
.+..|..|+++.|. ...+|..+ +.++ |++|-+++|+++.+|..|+.+.+|..|+.+.|.+.. |+.++.|.+|+.
T Consensus 119 ~L~~lt~l~ls~Nq---lS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQ---LSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhHHHHhhhccch---hhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 34555555665554 34555555 2333 777777777777777777777777777777777666 777777777777
Q ss_pred EeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 529 LSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 529 L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|+++.|++..+|.++..|+ |..||++ |+++..||-
T Consensus 194 l~vrRn~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv 228 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCSLP-LIRLDFS-CNKISYLPV 228 (722)
T ss_pred HHHhhhhhhhCCHHHhCCc-eeeeecc-cCceeecch
Confidence 7777777777777777554 6777776 477777773
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.41 E-value=2.1e-07 Score=103.88 Aligned_cols=128 Identities=22% Similarity=0.274 Sum_probs=99.1
Q ss_pred cccccccEEEeecCC--CCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccc
Q 045507 427 DALKQCHAISLLNSS--IPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLV 502 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~--~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~ 502 (566)
....+++.+-+..|. +..++. ...++.||.|++++|.. ...+|.++ +.+-+||+|+++++.+..+|.++++|+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--LSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--cCcCChHH-hhhhhhhcccccCCCccccchHHHHHH
Confidence 334478888888885 444444 34689999999999877 78899877 789999999999999999999999999
Q ss_pred ccceeeccCcc-cCC-ccccccCccCcEEeccCCCC---CccchhhcCCCCCCEEeccCC
Q 045507 503 NLQILCLHQYM-LGD-IAIIGKLKNLEILSIWGPDI---KTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 503 ~L~~L~L~~~~-l~~-p~~i~~L~~L~~L~l~~~~l---~~lP~~i~~L~~L~~L~l~~c 557 (566)
.|.||++.++. +.. |..+..|++|++|.+..... ..+-.++.+|.+|+.|.+..+
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99999999997 444 55566699999999987531 122344566666666665543
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.8e-07 Score=67.55 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=27.8
Q ss_pred cCcEEEecCCccccCC-hhhhcccccceeeccCcccCC--ccccccCccCcEEeccCC
Q 045507 480 KLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGP 534 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~ 534 (566)
+|++|++++|.+..+| ..+..+++|++|++++|.+.. |..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555555554 344455555555555555444 334455555555555544
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.39 E-value=7.6e-08 Score=102.86 Aligned_cols=92 Identities=26% Similarity=0.403 Sum_probs=60.5
Q ss_pred hHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCC
Q 045507 472 EKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLR 550 (566)
Q Consensus 472 ~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~ 550 (566)
-++..+.-+|+.|++++|.+..+|..|+.+.+|+.|+++.|.+.. |.++.++.+|++|.|.+|.+..+|.++..+++|+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 344444444666777777666667666666677777777666666 6666666777777776666666776677777777
Q ss_pred EEeccCCCCCccCC
Q 045507 551 QLDLVNCFQLKVIA 564 (566)
Q Consensus 551 ~L~l~~c~~l~~lP 564 (566)
.|++++ +++..+|
T Consensus 118 ~LdlS~-N~f~~~P 130 (1081)
T KOG0618|consen 118 YLDLSF-NHFGPIP 130 (1081)
T ss_pred ccccch-hccCCCc
Confidence 777766 5555555
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=7.2e-07 Score=97.32 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=76.5
Q ss_pred cCcEEEecCCccc-cCChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEEecc
Q 045507 480 KLKDVDMARMWLF-SLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQLDLV 555 (566)
Q Consensus 480 ~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~ 555 (566)
.+..|+|+++.+. .+|..++.|++|++|+|++|.+.. |..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999887 589999999999999999999875 889999999999999999876 789999999999999999
Q ss_pred CCCCCccCCC
Q 045507 556 NCFQLKVIAP 565 (566)
Q Consensus 556 ~c~~l~~lP~ 565 (566)
+|.--..+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9655457764
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=5.7e-07 Score=65.94 Aligned_cols=56 Identities=32% Similarity=0.444 Sum_probs=50.7
Q ss_pred cccceeeccCcccCC-c-cccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCC
Q 045507 502 VNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNC 557 (566)
Q Consensus 502 ~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c 557 (566)
++|++|++++|++.. | ..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 479999999999998 4 578899999999999999999875 6899999999999995
No 35
>PTZ00202 tuzin; Provisional
Probab=98.24 E-value=2.1e-05 Score=78.86 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=69.9
Q ss_pred CCCCCCccchHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHhc-ceEEEEeccCCCHHHHHHHHHHHcCCCC
Q 045507 149 HKGYESFESRLSTLKAIQNALSD---LNVSIIGVYGMGGIGKTTLVKEVAR-KVDFSEVSQNPNIKIIQGDIAEKLGLVS 224 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~-~~~wv~v~~~~~~~~i~~~i~~~l~~~~ 224 (566)
+.+...|+||+.++..+...|.+ ...+++.|.|++|+|||||++.+.. .....-+....+..+++..|+.+||.+.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPN 337 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCC
Confidence 45567899999999999988862 2346899999999999999999988 1122333344478999999999999743
Q ss_pred cccchHHHHHHHHHHH----hc-CCeEEEEE
Q 045507 225 CEKVETRRANRLYERL----KR-EKKILIVL 250 (566)
Q Consensus 225 ~~~~~~~~~~~l~~~l----~~-~kr~LlVl 250 (566)
... ..+....+.+.+ .. |++.+||+
T Consensus 338 ~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 338 VEA-CGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred ccc-HHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 222 223333343333 22 56666665
No 36
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.17 E-value=1e-05 Score=74.23 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccchHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 155 FESRLSTLKAIQNALS---DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|+||+++++++...+. ....+.+.|+|.+|+|||+|.+.++.
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999993 45579999999999999999999888
No 37
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.16 E-value=5.1e-06 Score=79.23 Aligned_cols=42 Identities=33% Similarity=0.428 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 155 FESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|+||++++++|.+++..+..+.+.|+|..|+|||+|++.+.+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 689999999999998887789999999999999999999988
No 38
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.16 E-value=6.3e-06 Score=78.64 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC--CCHHHHHHHH-----HHHcCCCCccc-ch-HHHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN--PNIKIIQGDI-----AEKLGLVSCEK-VE-TRRAN 234 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~--~~~~~i~~~i-----~~~l~~~~~~~-~~-~~~~~ 234 (566)
.....++|+|.+|+|||||++.+|+ .+.|+.+... +++.++++.+ +.+++.+.... .. ....+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998 2679997766 7999999999 44444321111 00 11222
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 045507 235 RLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 235 ~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
........|++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 3333334479999999999654
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=1.2e-06 Score=95.48 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=93.9
Q ss_pred cccccEEEeecCCC--CCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccc
Q 045507 429 LKQCHAISLLNSSI--PELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNL 504 (566)
Q Consensus 429 ~~~~r~l~l~~~~~--~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L 504 (566)
.++++++.+++... .+.+. +..+|.|++|.+.+-.. ...-...++.++++|+.||+|+++++.+ ..|+.|+||
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 35777787776433 11111 13589999999987543 1222344567899999999999999988 889999999
Q ss_pred ceeeccCcccCC---ccccccCccCcEEeccCCCCCccch-------hhcCCCCCCEEeccCCCCC
Q 045507 505 QILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPE-------ELGQLTKLRQLDLVNCFQL 560 (566)
Q Consensus 505 ~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~-------~i~~L~~L~~L~l~~c~~l 560 (566)
+.|.+.+-.+.. ...+.+|++|++||++......-|. .-..|++||.||+++ +.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cch
Confidence 999999887665 5688999999999999863332222 224689999999998 543
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=2.1e-05 Score=68.79 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|++..+..+...+.....+.+.|+|.+|+||||+++.+++
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 6788889998888776778999999999999999999988
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.02 E-value=0.00048 Score=69.36 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=38.8
Q ss_pred CCCCccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS-----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|+|++..++.+...+. ......+.|+|++|+||||+|+.+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence 45679999999998887765 23456789999999999999999999
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=1.8e-06 Score=81.09 Aligned_cols=106 Identities=25% Similarity=0.239 Sum_probs=81.4
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCCcccc-ccCccCcE
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGDIAII-GKLKNLEI 528 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~p~~i-~~L~~L~~ 528 (566)
.+..|+.|++++|. ...+..+. .-.+.+|+|++|.|.+...-. +..|++|+.|+|++|.+.....+ .+|-|.++
T Consensus 282 TWq~LtelDLS~N~---I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNL---ITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccc---hhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 35668888888876 45555544 678889999999998877543 77888999999999887773332 46778888
Q ss_pred EeccCCCCCccchhhcCCCCCCEEeccCCCCCcc
Q 045507 529 LSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKV 562 (566)
Q Consensus 529 L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~ 562 (566)
|.|.+|.+++| .++++|-+|..|++++ +++..
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ 388 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSS-NQIEE 388 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccc-cchhh
Confidence 99999888888 5699999999999998 55543
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=3.9e-06 Score=87.10 Aligned_cols=125 Identities=30% Similarity=0.424 Sum_probs=84.6
Q ss_pred cccccccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 427 DALKQCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
..+.++..+.+..|.+..++... ..+.|+.|.+.++. ...+|..+ ..+..|..|.+++|.+...|..+.++.++.
T Consensus 160 ~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~---i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~ 235 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK---ISDLPPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLS 235 (394)
T ss_pred hccccccccccCCchhhhhhhhhhhhhhhhheeccCCc---cccCchhh-hhhhhhhhhhhcCCcceecchhhhhccccc
Confidence 34556666666666666665554 56666666666655 34555533 344456666666665555666666777777
Q ss_pred eeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 506 ILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 506 ~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
.|.+.++.+.. +..++.+.+|++|++++|.+..++. ++.+.+|++|++++
T Consensus 236 ~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccC
Confidence 77777776666 6777788888888888888887776 88888888888887
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.8e-06 Score=55.65 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=18.5
Q ss_pred cCcEEEecCCccccCChhhhcccccceeeccCcccCC
Q 045507 480 KLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD 516 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~ 516 (566)
+|++|++++|.|+.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555545555555555555555443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.2e-06 Score=55.90 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=16.8
Q ss_pred ccceeeccCcccCC-ccccccCccCcEEeccCCCCCcc
Q 045507 503 NLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTL 539 (566)
Q Consensus 503 ~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 539 (566)
+|++|++++|.++. |+.+++|++|++|++++|.+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34455555555444 33344555555555555444443
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.9e-05 Score=75.35 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=81.7
Q ss_pred ccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc--------c-eEEEEeccCCCHHHHHHHHHHHcC
Q 045507 155 FESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR--------K-VDFSEVSQNPNIKIIQGDIAEKLG 221 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~--------~-~~wv~v~~~~~~~~i~~~i~~~l~ 221 (566)
+.+|+.+++++...|. +....-+.|+|..|.|||+.++.+.+ . .++|++-....+.+++..|++.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999998876 22333489999999999999999998 2 688999999999999999999996
Q ss_pred C-CCcccchHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045507 222 L-VSCEKVETRRANRLYERLKR-EKKILIVLDNIWKH 256 (566)
Q Consensus 222 ~-~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 256 (566)
. +.......+....+.+.+.. ++.++||||+++..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 3 22234555667777777754 67899999999765
No 47
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.00 E-value=3.7e-06 Score=84.43 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=80.5
Q ss_pred cccEEEeecCCCCCC-----CCC-CCC-CccceEEeccccccc--ccCCChHHHhcCccCcEEEecCCccc-----cCCh
Q 045507 431 QCHAISLLNSSIPEL-----PEG-LEC-PHLDFLLMVCKDTLI--ETNIPEKFFSRIKKLKDVDMARMWLF-----SLPS 496 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~-----~~~-~~~-~~Lr~L~l~~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~ 496 (566)
+++++.++.|.+... ... ..+ ++|+.|.+.++.... ...+ ...+..+.+|+.|++++|.+. .++.
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL-AKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH-HHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 488888888876521 111 234 788888887765300 0011 123456678888888888776 2445
Q ss_pred hhhcccccceeeccCcccCC------ccccccCccCcEEeccCCCCCcc-chhhc-----CCCCCCEEeccCC
Q 045507 497 SIDLLVNLQILCLHQYMLGD------IAIIGKLKNLEILSIWGPDIKTL-PEELG-----QLTKLRQLDLVNC 557 (566)
Q Consensus 497 ~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~l~~~~l~~l-P~~i~-----~L~~L~~L~l~~c 557 (566)
.+..+++|++|++++|.+.. +..+..+++|++|++++|.+... +..+. ..+.|++|++++|
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 55666788888888888764 23456778888999888866531 11221 2478888888886
No 48
>PF05729 NACHT: NACHT domain
Probab=97.97 E-value=2e-05 Score=70.76 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=45.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCH---HHHHHHHHHHcCCCCcccchHHHHHHHHH
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNI---KIIQGDIAEKLGLVSCEKVETRRANRLYE 238 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~---~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 238 (566)
|++.|+|.+|+||||+++.++. ..+|.+....... ..+...|..+......... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-----ELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-----HHHHH
Confidence 5899999999999999999887 1234444433222 2344444444332211111 12333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 045507 239 RLKREKKILIVLDNIWKH 256 (566)
Q Consensus 239 ~l~~~kr~LlVlDdv~~~ 256 (566)
.+...++++||+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~ 93 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDEL 93 (166)
T ss_pred HHHcCCceEEEEechHhc
Confidence 333458999999999765
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=6.4e-06 Score=85.44 Aligned_cols=129 Identities=29% Similarity=0.451 Sum_probs=101.2
Q ss_pred cccEEEeecCCCCCCC-CCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeec
Q 045507 431 QCHAISLLNSSIPELP-EGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 509 (566)
+++.+++..|.+..++ ....++.|+.|.+..+. ...++... ..++.|+.|+++++.+..+|..++.+.+|..|.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~---l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND---LSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch---hhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhh
Confidence 7888888888887774 33567888888887775 45555533 3678888888888888888888777778888888
Q ss_pred cCccc-CCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 510 HQYML-GDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 510 ~~~~l-~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
.+|.+ ..+..+.++.+|..|.+.++.+..+|..++.+++|+.|++++ +.+..+|
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~ 271 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSIS 271 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc-ccccccc
Confidence 88864 448888888888888888888877788899999999999988 6766665
No 50
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.94 E-value=2.7e-05 Score=77.72 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=59.8
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC--CHHHHHHHHHHHcCCCC-cccchH--
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP--NIKIIQGDIAEKLGLVS-CEKVET-- 230 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~--~~~~i~~~i~~~l~~~~-~~~~~~-- 230 (566)
+++.+. -...+..+|+|.+|+||||||+.+|+ .+.|+.+.+.+ .+.++++.|...+-... +.....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~ 238 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV 238 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHH
Confidence 344443 23457789999999999999999998 45799999887 78888888863221111 111111
Q ss_pred ---HHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 045507 231 ---RRANRLYERL-KREKKILIVLDNIWKH 256 (566)
Q Consensus 231 ---~~~~~l~~~l-~~~kr~LlVlDdv~~~ 256 (566)
......-+++ ..|++.+|++|++...
T Consensus 239 ~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1112222222 3578999999998643
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.7e-05 Score=78.53 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=55.3
Q ss_pred cccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccCChhhhcccccceeec
Q 045507 431 QCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L~~L~L 509 (566)
+.++|.++.|.+..+|.. -++|++|.+.++.. ...+|+.+ ..+|+.|++++| .+..+|.+ |+.|++
T Consensus 53 ~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~n--LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 53 ASGRLYIKDCDIESLPVL--PNELTEITIENCNN--LTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred CCCEEEeCCCCCcccCCC--CCCCcEEEccCCCC--cccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence 445555665555555521 12466666655443 34444432 235566666655 45555543 222233
Q ss_pred cCcc---cCC-ccccccC------------------ccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 510 HQYM---LGD-IAIIGKL------------------KNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 510 ~~~~---l~~-p~~i~~L------------------~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
.++. +.. |+++..| .+|++|++.+|....+|..+- .+|++|.++.+
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 3322 222 3333322 367777777775555554433 46777776553
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.92 E-value=0.0001 Score=85.18 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc---ceEEEEeccC-CCHHHHHHHHHHHcCCCCcc-
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR---KVDFSEVSQN-PNIKIIQGDIAEKLGLVSCE- 226 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~---~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~~- 226 (566)
...++-|....+.+-. ....+++.|+|++|.||||++.+..+ .+.|+++... .++..+...++..++.....
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc
Confidence 3456667765555432 24578999999999999999999877 5889999644 46666777776666311110
Q ss_pred -------------cchHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045507 227 -------------KVETRRANRLYERLKR-EKKILIVLDNIWKH 256 (566)
Q Consensus 227 -------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 256 (566)
.........+...+.. +.+++||+||+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~ 133 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI 133 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC
Confidence 1111233344444432 57899999999654
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.88 E-value=0.00017 Score=71.95 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS-----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..|+|++..++.+..++. ......+.++|++|+|||+||+.+.+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999888876 23456788999999999999999998
No 54
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.86 E-value=2.1e-06 Score=83.76 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=61.4
Q ss_pred ceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-ChhhhcccccceeeccC-cccCC-cc-ccccCccCcEEe
Q 045507 455 DFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQ-YMLGD-IA-IIGKLKNLEILS 530 (566)
Q Consensus 455 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~-~~l~~-p~-~i~~L~~L~~L~ 530 (566)
..+.+..|. +..+|+..|+.+++||.|||++|.|+.+ |+.|.+|..|..|-+.+ |+|+. |. .++.|..|+-|.
T Consensus 70 veirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 70 VEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred eEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 334454443 5566666666666677777766666654 56666666666555555 45666 43 456666666666
Q ss_pred ccCCCCCccc-hhhcCCCCCCEEeccCCCCCccCC
Q 045507 531 IWGPDIKTLP-EELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 531 l~~~~l~~lP-~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
++-|.+.-++ ..+..|++|..|.+.+ +.++.++
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~ 180 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD-NKIQSIC 180 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc-hhhhhhc
Confidence 6655554433 3355666666665555 4444444
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.83 E-value=0.0002 Score=77.80 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCccchHHHHHHHHHHHh----c-CCceEEEEEecCCCcHHHHHHHHhc--------------ceEEEEeccCCCHHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----D-LNVSIIGVYGMGGIGKTTLVKEVAR--------------KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----~-~~~~vv~I~G~gGiGKTtLa~~v~~--------------~~~wv~v~~~~~~~~i~ 213 (566)
..+.||++++++|...|. . ....++-|+|.+|.|||+.++.|.+ .+++|+...-.....+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 457899999999998876 2 2335778999999999999999976 13455555656788888
Q ss_pred HHHHHHcCCCCccc--chHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 045507 214 GDIAEKLGLVSCEK--VETRRANRLYERLKR--EKKILIVLDNIWKH 256 (566)
Q Consensus 214 ~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 256 (566)
..|..++....+.. ........+...+.. +...+||||+++..
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 88988884433221 233445555555522 22458999999754
No 56
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.82 E-value=3.8e-05 Score=79.79 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=42.0
Q ss_pred CCCccchHHHHHH---HHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEecc
Q 045507 152 YESFESRLSTLKA---IQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQ 205 (566)
Q Consensus 152 ~~~~~gr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~ 205 (566)
...++|++..+.. +..++.......+.++|.+|+||||+|+.+++ ..-|+.++.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3468888887655 77777777777889999999999999999998 444555543
No 57
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.81 E-value=2e-05 Score=79.09 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=92.9
Q ss_pred cccccEEEeecCCCCCC-CCC-CCC---CccceEEeccccccc--ccCCChHHHhcC-ccCcEEEecCCccc-----cCC
Q 045507 429 LKQCHAISLLNSSIPEL-PEG-LEC---PHLDFLLMVCKDTLI--ETNIPEKFFSRI-KKLKDVDMARMWLF-----SLP 495 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~-~~~-~~~---~~Lr~L~l~~~~~~~--~~~~~~~~~~~l-~~Lr~L~l~~~~~~-----~lp 495 (566)
..+++.++++.|.+... +.. ..+ ++|++|.+.++.... ...+. ..+..+ ++|+.|++++|.+. .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 55899999998887531 111 122 459999998765310 01111 223455 89999999999887 345
Q ss_pred hhhhcccccceeeccCcccCC------ccccccCccCcEEeccCCCCC-----ccchhhcCCCCCCEEeccCCC
Q 045507 496 SSIDLLVNLQILCLHQYMLGD------IAIIGKLKNLEILSIWGPDIK-----TLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 496 ~~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~c~ 558 (566)
..+..+.+|++|++++|.+.. +..+..+++|++|++++|.+. .++..+..+++|++|++++|.
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 667778899999999999874 334556679999999999764 455667889999999999964
No 58
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=0.00012 Score=73.47 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC--CCHHHHHHHHHHH-----cCCCCccc-chHHH-HH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN--PNIKIIQGDIAEK-----LGLVSCEK-VETRR-AN 234 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~--~~~~~i~~~i~~~-----l~~~~~~~-~~~~~-~~ 234 (566)
.....++|+|.+|.|||||++.+++ ...|+.+.+. ..+.++++.|... ++.+.... ..... .+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999998 2579998866 7899999999433 33211110 01111 22
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 045507 235 RLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 235 ~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
........|++.+|++|.+...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2223334579999999998643
No 59
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.67 E-value=1e-05 Score=78.97 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=113.3
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecC-Ccccc
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMAR-MWLFS 493 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~ 493 (566)
+....+.| ...+.....+.+..|.|..+|.. ..+++||.|+++.|. +..|.+..|..++.|-.|-+.+ |.|+.
T Consensus 55 ~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 33344444 34567788899999999999876 378999999999887 6778888888999887776555 89999
Q ss_pred CC-hhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCC
Q 045507 494 LP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 494 lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~ 558 (566)
+| ..+++|..|+-|.+.-|++.. ...+..|++|..|.+-.|.++.+++ .+..+..++++++..++
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 99 568999999999999999887 5678899999999999999999988 68899999999886643
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.2e-05 Score=79.66 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=94.7
Q ss_pred ccccccEEEeecCCCCC--CCC-CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC--hhhhccc
Q 045507 428 ALKQCHAISLLNSSIPE--LPE-GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP--SSIDLLV 502 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~--~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~L~ 502 (566)
....+..|.++.|.+.. +.. ...+|.|..|.++.|........+. .-+..|+.|||++|++..++ ..++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCccccccccccccccc
Confidence 45678889999998852 111 2368999999999885322233333 44678999999999988877 6678999
Q ss_pred ccceeeccCcccCC---ccc-----cccCccCcEEeccCCCCCccch--hhcCCCCCCEEeccC
Q 045507 503 NLQILCLHQYMLGD---IAI-----IGKLKNLEILSIWGPDIKTLPE--ELGQLTKLRQLDLVN 556 (566)
Q Consensus 503 ~L~~L~L~~~~l~~---p~~-----i~~L~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~ 556 (566)
.|+.|+++.|.+.+ |+. .-.+++|++|++..|++.++|. .+..+++|++|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 99999999998766 433 3568999999999998877653 467778888888654
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00021 Score=70.61 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCccchHHHH---HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCCccc
Q 045507 153 ESFESRLSTL---KAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK 227 (566)
Q Consensus 153 ~~~~gr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~ 227 (566)
..++|.+..+ .-|-..+..+.+.-.-+||++|+||||||+.+.. ...|..++...+-.+=++.+++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e--------- 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIE--------- 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHH---------
Confidence 3455554433 2334445577888889999999999999999998 5667777765443333333322
Q ss_pred chHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 228 VETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 228 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.-++....|++.+|++|.|-.
T Consensus 95 -------~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 95 -------EARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred -------HHHHHHhcCCceEEEEehhhh
Confidence 222223337899999999863
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.1e-05 Score=77.96 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=89.1
Q ss_pred cccccEEEeecCCCCCCCCC---CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccCChhhhccccc
Q 045507 429 LKQCHAISLLNSSIPELPEG---LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSLPSSIDLLVNL 504 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L 504 (566)
.++++.|.++.|.+...... ..+++|..|.++++.. ...--..+...+++|.+|++.+| .+..--.+...+..|
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL--SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCC--CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 44666666766665432221 2467788888876653 22222334457788888888888 332222333457789
Q ss_pred ceeeccCcccCC-c--cccccCccCcEEeccCCCCCcc--chh-----hcCCCCCCEEeccCCCCCccCC
Q 045507 505 QILCLHQYMLGD-I--AIIGKLKNLEILSIWGPDIKTL--PEE-----LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 505 ~~L~L~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~l--P~~-----i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+.|+|++|++.. + ..++.|+.|.-|++..|.+.++ |.. ...+++|++|++.. ++++.+|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~ 317 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWR 317 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Ccccccc
Confidence 999999999666 4 6788999999999999977654 443 46788999999988 5655443
No 63
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00046 Score=67.66 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=78.6
Q ss_pred CCCccchHHHHHHHHHHHhcCC---ceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHHcCC-C
Q 045507 152 YESFESRLSTLKAIQNALSDLN---VSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEKLGL-V 223 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~l~~-~ 223 (566)
.+.|.+|+..+..+..++.+.. .+.|-|+|-.|.|||.+.+++++ .-.|+++-..+...-++..|+...+. +
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCC
Confidence 3567899999999999988543 34568899999999999999999 56999999999999999999998852 2
Q ss_pred Cccc---c----hHHHHHHHHH--HHh-cCCeEEEEEeCCCCccccc
Q 045507 224 SCEK---V----ETRRANRLYE--RLK-REKKILIVLDNIWKHVDLE 260 (566)
Q Consensus 224 ~~~~---~----~~~~~~~l~~--~l~-~~kr~LlVlDdv~~~~~~~ 260 (566)
.+.. . ..+.+..+.+ ... .++.++||||+++...+.+
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 2111 1 1112222332 111 1458999999998665433
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.53 E-value=0.00044 Score=63.75 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=34.2
Q ss_pred CCCCCccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALS-----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....|+|.+..++++.-++. .+.+..+.+||++|+||||||..+.+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh
Confidence 345689999988887655443 34577899999999999999999999
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.9e-05 Score=83.02 Aligned_cols=105 Identities=21% Similarity=0.282 Sum_probs=84.8
Q ss_pred CCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhcccccceeeccCcccCCccccccCccCcE
Q 045507 451 CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDLLVNLQILCLHQYMLGDIAIIGKLKNLEI 528 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~ 528 (566)
-.+|++|.+.|... ....++..+...++.|+.|.+++-.+.. +-.-..++++|+.||+++++++....|++|+|||.
T Consensus 121 r~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 45799999988653 1457777787889999999999976543 23444578999999999999999999999999999
Q ss_pred EeccCCCCCccc--hhhcCCCCCCEEeccC
Q 045507 529 LSIWGPDIKTLP--EELGQLTKLRQLDLVN 556 (566)
Q Consensus 529 L~l~~~~l~~lP--~~i~~L~~L~~L~l~~ 556 (566)
|.+++=.+..-+ ..+.+|++|++||+|.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 999886555432 4688999999999987
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=97.49 E-value=0.00033 Score=74.33 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCCCccchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSD----LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.++.++++.+|+.. ...+.+.|+|.+|+||||+|+.+++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999863 2268899999999999999999999
No 67
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.39 E-value=0.0006 Score=66.28 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=51.3
Q ss_pred HHHHhcCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHH
Q 045507 166 QNALSDLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERL 240 (566)
Q Consensus 166 ~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l 240 (566)
.+++..+.+..+.+||.+|.||||||+.+.+ .++||..|....-..=.+.|+++-. . ...+
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq-------------~-~~~l 219 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ-------------N-EKSL 219 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH-------------H-HHhh
Confidence 3444577888899999999999999999998 5678888876544444444443321 1 1122
Q ss_pred hcCCeEEEEEeCCC
Q 045507 241 KREKKILIVLDNIW 254 (566)
Q Consensus 241 ~~~kr~LlVlDdv~ 254 (566)
. ++|.+|.+|.|-
T Consensus 220 ~-krkTilFiDEiH 232 (554)
T KOG2028|consen 220 T-KRKTILFIDEIH 232 (554)
T ss_pred h-cceeEEEeHHhh
Confidence 2 478889999885
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=3.7e-05 Score=64.23 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=78.3
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-ccccccCccCcE
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEI 528 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 528 (566)
...+|....+++|. ..++|..+..+++.+..|++++|.+..+|..+..++.||.|+++.|++.. |.-|..|.+|-+
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 34567777888877 57888888788888999999999999999999999999999999999887 988888999999
Q ss_pred EeccCCCCCccchhh
Q 045507 529 LSIWGPDIKTLPEEL 543 (566)
Q Consensus 529 L~l~~~~l~~lP~~i 543 (566)
|+..++....+|-.+
T Consensus 128 Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 128 LDSPENARAEIDVDL 142 (177)
T ss_pred hcCCCCccccCcHHH
Confidence 999998887887663
No 69
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.38 E-value=0.00065 Score=69.50 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCC
Q 045507 153 ESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLV 223 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~ 223 (566)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++ .+.||++++.++...+...+--. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3466778888999888774 45778899999999999999987 45689999888777665432100 000
Q ss_pred CcccchHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 224 SCEKVETRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 224 ~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
..... .-....+.+... .++++++|+|++...
T Consensus 252 y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000 001111112111 136899999999654
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.34 E-value=0.0024 Score=61.68 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCC
Q 045507 159 LSTLKAIQNALSD---LNVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGL 222 (566)
Q Consensus 159 ~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~ 222 (566)
.+.++++.+++.. ....-+.|||-+|+|||++++.+.. .+..|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4445666666652 3445699999999999999999987 35566667788999999999999998
Q ss_pred CCcccc-hHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 223 VSCEKV-ETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 223 ~~~~~~-~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
+..... ...........++.-+--+||+|.+-+
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 765442 233344444555543456889999854
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=5.9e-05 Score=78.61 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=40.8
Q ss_pred hcCccCcEEEecCCccccCChhhhcccccceeeccCcccCCccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEec
Q 045507 476 SRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDL 554 (566)
Q Consensus 476 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l 554 (566)
..+.+|++|++++|.|..+. .+..|..|+.|++.+|.|...+.+..+.+|+.|++.+|.+..++.. +..+.+|+.+.+
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred hhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 34555555555555555432 2334444555555555555544444455555555555555444332 344555555555
Q ss_pred cC
Q 045507 555 VN 556 (566)
Q Consensus 555 ~~ 556 (566)
.+
T Consensus 194 ~~ 195 (414)
T KOG0531|consen 194 GG 195 (414)
T ss_pred cC
Confidence 44
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.00026 Score=71.47 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccCChhhhcccccceeeccCc-ccCC-ccccccCccC
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSLPSSIDLLVNLQILCLHQY-MLGD-IAIIGKLKNL 526 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L~~L~L~~~-~l~~-p~~i~~L~~L 526 (566)
.+.+++.|.+.++. ...+|. -..+|+.|.+++| .++.+|..+ ..+|++|.+++| .+.. |+ +|
T Consensus 50 ~~~~l~~L~Is~c~---L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 50 EARASGRLYIKDCD---IESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HhcCCCEEEeCCCC---CcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 35667777777653 455551 2345777777765 566667655 357777777777 4555 43 35
Q ss_pred cEEeccCC---CCCccchhhc
Q 045507 527 EILSIWGP---DIKTLPEELG 544 (566)
Q Consensus 527 ~~L~l~~~---~l~~lP~~i~ 544 (566)
++|++.++ .+..||.++.
T Consensus 115 e~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred ceEEeCCCCCcccccCcchHh
Confidence 55555543 3556666543
No 73
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.26 E-value=6.7e-06 Score=86.07 Aligned_cols=128 Identities=25% Similarity=0.221 Sum_probs=95.9
Q ss_pred cccccccEEEeecCCCCCCCCCCC-CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhccccc
Q 045507 427 DALKQCHAISLLNSSIPELPEGLE-CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNL 504 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L 504 (566)
..+.++...++++|.+..+..... ++.|++|.++.|.. .+.. .+..+..|+.||++.|.+..+|.- .... +|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~---~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF---TKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KL 234 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh---hhhH--HHHhcccccccccccchhccccccchhhh-hh
Confidence 346677778888887765554443 58899999988763 3332 456889999999999998888842 2223 49
Q ss_pred ceeeccCcccCCccccccCccCcEEeccCCCC---CccchhhcCCCCCCEEeccCCCCCcc
Q 045507 505 QILCLHQYMLGDIAIIGKLKNLEILSIWGPDI---KTLPEELGQLTKLRQLDLVNCFQLKV 562 (566)
Q Consensus 505 ~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l---~~lP~~i~~L~~L~~L~l~~c~~l~~ 562 (566)
+.|.+++|.++....|.+|.+|+.||+++|-+ .+| .-+|.|..|+.|+|.| +.+-.
T Consensus 235 ~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeG-NPl~c 293 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEG-NPLCC 293 (1096)
T ss_pred eeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcC-Ccccc
Confidence 99999999999988999999999999999844 344 2378888999999998 44443
No 74
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.0013 Score=74.51 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++||+++++++++.|......-+.++|.+|+|||++|+.++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999865555667999999999999998877
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=7.2e-05 Score=62.57 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=67.5
Q ss_pred ccccEEEeecCCCCCCCCCC--CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 430 KQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
..+..+++++|.+..+|... .++-+++|.+..+. ...+|.+ +..++.||.|+++.|.+..+|.-|-.|.+|-+|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne---isdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE---ISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh---hhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 35667888888888777653 56688888887775 6788888 478899999999999999899888889999999
Q ss_pred eccCcccCC
Q 045507 508 CLHQYMLGD 516 (566)
Q Consensus 508 ~L~~~~l~~ 516 (566)
+..++.+..
T Consensus 129 ds~~na~~e 137 (177)
T KOG4579|consen 129 DSPENARAE 137 (177)
T ss_pred cCCCCcccc
Confidence 998887665
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.22 E-value=0.00067 Score=58.13 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=38.4
Q ss_pred EEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCC-eEEEEEeCC
Q 045507 177 IGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREK-KILIVLDNI 253 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv 253 (566)
|.|+|.+|+||||+|+.+++ ..-++.++....... ...........+.+...... +.+|++||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS-------------YAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS-------------STTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc-------------cccccccccccccccccccccceeeeeccc
Confidence 57899999999999999999 333344433210000 11111222333333333223 799999998
Q ss_pred CCc
Q 045507 254 WKH 256 (566)
Q Consensus 254 ~~~ 256 (566)
+..
T Consensus 68 d~l 70 (132)
T PF00004_consen 68 DKL 70 (132)
T ss_dssp GGT
T ss_pred hhc
Confidence 643
No 77
>PF13173 AAA_14: AAA domain
Probab=97.22 E-value=0.00061 Score=58.25 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=45.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKIL 247 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 247 (566)
.+++.|.|+.|+||||++++++. .++++++.+.........+ ..+.+.+.... ++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~~ 64 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD----------------LLEYFLELIKP-GKKY 64 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhcc-CCcE
Confidence 47899999999999999999986 3556655544321110000 11223333222 5688
Q ss_pred EEEeCCCCccccccc
Q 045507 248 IVLDNIWKHVDLESI 262 (566)
Q Consensus 248 lVlDdv~~~~~~~~~ 262 (566)
|++|++.....|...
T Consensus 65 i~iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 65 IFIDEIQYLPDWEDA 79 (128)
T ss_pred EEEehhhhhccHHHH
Confidence 999999877666554
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.19 E-value=0.00014 Score=75.75 Aligned_cols=87 Identities=26% Similarity=0.316 Sum_probs=77.0
Q ss_pred hcCccCcEEEecCCccccCChhhhcccccceeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEecc
Q 045507 476 SRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLV 555 (566)
Q Consensus 476 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~ 555 (566)
..+++|..|++.+|.+..+...+..+++|++|++++|.|.....+..|..|+.|++.+|.+..++ ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 67889999999999999987768889999999999999999888899999999999999998885 47779999999999
Q ss_pred CCCCCccCC
Q 045507 556 NCFQLKVIA 564 (566)
Q Consensus 556 ~c~~l~~lP 564 (566)
+ +.+..++
T Consensus 171 ~-n~i~~ie 178 (414)
T KOG0531|consen 171 Y-NRIVDIE 178 (414)
T ss_pred c-chhhhhh
Confidence 9 5655544
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00054 Score=61.35 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=52.3
Q ss_pred ccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC--hhhhcccccceeec
Q 045507 432 CHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP--SSIDLLVNLQILCL 509 (566)
Q Consensus 432 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~L~~L~~L~L 509 (566)
...+.+..|++-.++....++.|.+|.+..|. +..+.+.+-..+++|..|.+++|++.++. ..+..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr---It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR---ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCc---ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555555444444455566666665554 34444444444555666666666655543 23344556666666
Q ss_pred cCcccCC-c----cccccCccCcEEeccC
Q 045507 510 HQYMLGD-I----AIIGKLKNLEILSIWG 533 (566)
Q Consensus 510 ~~~~l~~-p----~~i~~L~~L~~L~l~~ 533 (566)
-+|.+.. . --+.++++|++||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6665444 1 2355566666666544
No 80
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.014 Score=62.19 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEE--eccCCCHHHHHHHHHHHcCC
Q 045507 153 ESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSE--VSQNPNIKIIQGDIAEKLGL 222 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~--v~~~~~~~~i~~~i~~~l~~ 222 (566)
.+-+|-++.+++|+++|. .-...++.+||++|+|||+|++.++. .+-||. ++.-.+..+|- |.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR-------GH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR-------GH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc-------cc
Confidence 456789999999999986 23458999999999999999999999 444444 44444444432 11
Q ss_pred CCccc-chHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 223 VSCEK-VETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 223 ~~~~~-~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
..... ..-..+-+-.+..+ .++=+++||.++..
T Consensus 396 RRTYIGamPGrIiQ~mkka~-~~NPv~LLDEIDKm 429 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAG-VKNPVFLLDEIDKM 429 (782)
T ss_pred cccccccCChHHHHHHHHhC-CcCCeEEeechhhc
Confidence 11111 11111111122222 36778899998643
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.17 E-value=0.00065 Score=74.75 Aligned_cols=45 Identities=31% Similarity=0.449 Sum_probs=36.5
Q ss_pred CCCccchHHHHH---HHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLK---AIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|+|++..+. .+.+.+..+....+.++|.+|+||||+|+.+++
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 446788888774 455666667777889999999999999999998
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=3.6e-05 Score=80.81 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=65.6
Q ss_pred HhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-cc-ccccCccCcEEeccCCCCCccchhhcCCCCCCEE
Q 045507 475 FSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQL 552 (566)
Q Consensus 475 ~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L 552 (566)
..-++.|+.|+|++|.+...- .+..|.+|..|||++|.+.. |. +... .+|+.|.|++|.+.+| .+|.+|++|++|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhh-hhheeeeecccHHHhh-hhHHhhhhhhcc
Confidence 356788999999999988754 78889999999999998887 43 2222 3499999999999888 579999999999
Q ss_pred eccC
Q 045507 553 DLVN 556 (566)
Q Consensus 553 ~l~~ 556 (566)
++++
T Consensus 260 Dlsy 263 (1096)
T KOG1859|consen 260 DLSY 263 (1096)
T ss_pred chhH
Confidence 9998
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.16 E-value=0.0019 Score=55.69 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=45.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc----c---eEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR----K---VDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKI 246 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~----~---~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 246 (566)
...+.|+|.+|+||||+++.+.. . ++++..+........... ...................+.+.....+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35789999999999999999988 2 444444433222222111 111111111112222333444555432348
Q ss_pred EEEEeCCCCcc
Q 045507 247 LIVLDNIWKHV 257 (566)
Q Consensus 247 LlVlDdv~~~~ 257 (566)
+|++|++....
T Consensus 81 viiiDei~~~~ 91 (148)
T smart00382 81 VLILDEITSLL 91 (148)
T ss_pred EEEEECCcccC
Confidence 99999997653
No 84
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0071 Score=64.16 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=48.0
Q ss_pred CCCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHH
Q 045507 152 YESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKII 212 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i 212 (566)
..+-+|.++.+++|++++. +.+.+++..+|++|+|||++|+.++. ..|-++|+.-.+..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhh
Confidence 3556799999999999986 34678999999999999999999998 3344566665665554
No 85
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.10 E-value=0.0014 Score=67.38 Aligned_cols=94 Identities=23% Similarity=0.317 Sum_probs=57.6
Q ss_pred CCCCCccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHH
Q 045507 150 KGYESFESRLSTLKAIQNALS----D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQG 214 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~ 214 (566)
.....+.|+++.++++.+.+. . ...+-|.++|.+|.|||++|+++++ ..-|+.++.. .+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~----~l~~ 203 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS----ELVQ 203 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH----HHhH
Confidence 344567899999998887653 1 2346689999999999999999998 4445544321 1111
Q ss_pred HHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 215 DIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 215 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
. ..+ ........+.+......+.+|++|+++..
T Consensus 204 ~---~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 204 K---FIG------EGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred h---hcc------chHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 011 01112233333333345789999999643
No 86
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.10 E-value=0.0059 Score=52.99 Aligned_cols=111 Identities=11% Similarity=0.134 Sum_probs=78.3
Q ss_pred hhHHH-HHHHHHHHhhhhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Q 045507 2 VEIIV-TLVLEVVKCLAPPTESRLRYLRNYNANIESLKAEMEKLRDESTRIQRRVSEAKAKGEEIEEKVKKWVIRTDKII 80 (566)
Q Consensus 2 ae~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~a 80 (566)
||+++ ++++.+++.++..+.+.......+ +.-++.|.+++..|...+++.+.-+.+.+.+.+.=++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~f-------k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSF-------KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 56664 567777777777777665544444 5556666666666677777777665555666677799999999
Q ss_pred HHHHHhhhhhhhhhcccccCCCcChhHHhHHHHHHHHHHHHHHHHH
Q 045507 81 DEAAKFIEDEETNNKRCLKGLCPDFKTRYQLSKKAETELKAIVELR 126 (566)
Q Consensus 81 ~~~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~ 126 (566)
.+++++++.+..-. ++++...++.+++|+++.+.+....
T Consensus 76 ~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 76 EKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99999999886432 2456667778888888888777654
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.06 E-value=0.0025 Score=65.22 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=57.7
Q ss_pred CCCCCCCccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS----D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
|.....++.|+++.++++.+.+. . ...+-+.++|.+|+|||++|+.+++ ...++.+.. ..+
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~----~~l 192 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----SEL 192 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch----HHH
Confidence 33445568899999999988764 1 1245589999999999999999998 333443321 111
Q ss_pred HHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 213 QGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 213 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
.... ++ ........+.+......+.+|++|+++..
T Consensus 193 ~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l 227 (364)
T TIGR01242 193 VRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAI 227 (364)
T ss_pred HHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence 1110 11 01112223333333345789999999643
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=97.06 E-value=0.0025 Score=63.85 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.++.++.|..++..+....+.++|.+|+||||+|+.+.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456788888888888887777777788999999999999999887
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.03 E-value=0.0033 Score=70.29 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++||+.+++++++.|......-+.++|.+|+|||++|+.+++
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 357899999999999988866666678999999999999999887
No 90
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.0011 Score=59.45 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=74.1
Q ss_pred CccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhc-ccccceeeccCcccCC---ccccccCccCc
Q 045507 452 PHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDL-LVNLQILCLHQYMLGD---IAIIGKLKNLE 527 (566)
Q Consensus 452 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~-L~~L~~L~L~~~~l~~---p~~i~~L~~L~ 527 (566)
.....+++.++. ...++. |..++.|..|.+++|.|..+-..+.. +++|..|.|.+|+|.. ...+..++.|+
T Consensus 42 d~~d~iDLtdNd---l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDND---LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccc---hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 345556666655 233332 46788899999999999887655554 4679999999998766 45566778999
Q ss_pred EEeccCCCCCccchh----hcCCCCCCEEeccC
Q 045507 528 ILSIWGPDIKTLPEE----LGQLTKLRQLDLVN 556 (566)
Q Consensus 528 ~L~l~~~~l~~lP~~----i~~L~~L~~L~l~~ 556 (566)
+|.+-+|.+...+.. +.++++|++||.++
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999988877766543 78999999999875
No 91
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0053 Score=61.51 Aligned_cols=94 Identities=12% Similarity=0.148 Sum_probs=63.4
Q ss_pred HHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccC-CCHHHHHHHHHHHcCCCCcccch-
Q 045507 162 LKAIQNALSD-LNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQN-PNIKIIQGDIAEKLGLVSCEKVE- 229 (566)
Q Consensus 162 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~~~~~- 229 (566)
..++++.+.. ...+.+.|+|..|+|||||++.+.+ .++|+.+.+. ..+.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 4456776662 3456779999999999999999877 1577777655 56788888888777654322211
Q ss_pred -----HHHHHHHHHHH-hcCCeEEEEEeCCCC
Q 045507 230 -----TRRANRLYERL-KREKKILIVLDNIWK 255 (566)
Q Consensus 230 -----~~~~~~l~~~l-~~~kr~LlVlDdv~~ 255 (566)
......+-+++ ..|++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11223333343 348999999999854
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.99 E-value=0.0017 Score=61.59 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+....++.+.+++.......+.|+|..|+|||++|+.+++
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3566778888876666678899999999999999999987
No 93
>PHA00729 NTP-binding motif containing protein
Probab=96.95 E-value=0.0036 Score=58.32 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 163 KAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 163 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+++++.+...+...+.|.|.+|+||||||..+.+
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555566667899999999999999999887
No 94
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.00051 Score=61.66 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.|+|.+|+||||||+.+++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999998
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0038 Score=59.26 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.+.++|.+|+|||+|++.+++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999987
No 96
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.0036 Score=56.42 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.90 E-value=0.0034 Score=71.10 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=39.5
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++||+.++.++++.|......-+.++|.+|+|||++|+.+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHH
Confidence 457899999999999998876666677999999999999998877
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.89 E-value=0.0037 Score=62.66 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++|.+...+.+..++..+.. .++.++|.+|+||||+|+.+++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3455788999999999999886654 5666799999999999999988
No 99
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.87 E-value=0.004 Score=65.46 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=37.6
Q ss_pred CCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 148 PHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|.....++.|.+..++++.+.+. -...+-+.++|.+|.|||++|+++++
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 33445567788988888877653 02345689999999999999999998
No 100
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.84 E-value=0.0066 Score=60.92 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++.+..++.....+.+.++|..|+||||+|+.+.+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999998877777789999999999999999988
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0057 Score=64.24 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+.....|...+..+.+ ..+.++|.+|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45688998888888887777666 4579999999999999999987
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.82 E-value=0.0043 Score=70.10 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+.++.++++.|......-+.++|.+|+||||+|+.+++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHH
Confidence 3467899999999999998876666677999999999999999887
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.018 Score=56.45 Aligned_cols=97 Identities=26% Similarity=0.339 Sum_probs=65.0
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHH
Q 045507 146 LKPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIK 210 (566)
Q Consensus 146 ~~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~ 210 (566)
..|...+.++-|-++.+++|.+... =+..+=|.++|++|.|||-||++|+| ..-|+.|..+ .
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS---E 220 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS---E 220 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH---H
Confidence 4455667777888998888888754 13456688999999999999999999 4556655443 1
Q ss_pred HHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 211 IIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 211 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
-+++ .+|.. ......+.+.-+.+....|.+|.++.
T Consensus 221 lVqK----YiGEG------aRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 221 LVQK----YIGEG------ARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred HHHH----Hhccc------hHHHHHHHHHHhhcCCeEEEEechhh
Confidence 1111 12211 22345555555666789999998853
No 104
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.77 E-value=0.0053 Score=56.23 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|-++.++.+.-...+++..-+.|.|++|+||||-+..+++
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHH
Confidence 3456889999888887777788899999999999999998777666
No 105
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.013 Score=59.37 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=74.0
Q ss_pred CCCCccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHH
Q 045507 151 GYESFESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~ 217 (566)
...++.||+.+++.+.+++. .+..+-+-|.|-+|.|||.+...++. .+.+++...-....+++..|+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34568899999999998876 34567888999999999999999988 234555444456777888887
Q ss_pred HHcCCC-CcccchHHHHHHHHHHHhcCC-eEEEEEeCCCCc
Q 045507 218 EKLGLV-SCEKVETRRANRLYERLKREK-KILIVLDNIWKH 256 (566)
Q Consensus 218 ~~l~~~-~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~ 256 (566)
..+-.. .......+....+.++....+ -+|+|||.++..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 766211 111122445566666665433 689999998754
No 106
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.76 E-value=0.0056 Score=62.83 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=57.5
Q ss_pred CCCCCCCccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS----D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
|.....++.|.+..+++|.+.+. . ...+-+.++|.+|.|||++|+.+++ ...++.+.. ..+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~----s~l 215 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG----SEF 215 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh----HHH
Confidence 44445667888888887777653 1 2356789999999999999999998 333333321 111
Q ss_pred HHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 213 QGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 213 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
... ..+. .......+........+.+|++|+++..
T Consensus 216 ~~k---~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 216 VQK---YLGE------GPRMVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred HHH---hcch------hHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence 111 1110 0112233333343346899999998643
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.74 E-value=0.0012 Score=55.64 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=24.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc--ceEEEEecc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQ 205 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~ 205 (566)
+|.|.|.+|+||||+|+.+.+ ...+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 689999999999999999998 444444443
No 108
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0098 Score=63.64 Aligned_cols=45 Identities=24% Similarity=0.415 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999877664 568999999999999999988
No 109
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.71 E-value=0.017 Score=62.70 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=65.7
Q ss_pred CccchHHHHHHHHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc------ceEEEEeccC-CCHHHHHHHHHHHcCCCCc
Q 045507 154 SFESRLSTLKAIQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQN-PNIKIIQGDIAEKLGLVSC 225 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~ 225 (566)
..+-|.. +++.|. ..+.|.+.|..++|.||||++-+... .+.|.+.... .++..+...++..++.-.+
T Consensus 20 ~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 20 NYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 3444554 444444 34789999999999999999999964 7899999755 5788888888888764322
Q ss_pred cc--------------chHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045507 226 EK--------------VETRRANRLYERLKR-EKKILIVLDNIW 254 (566)
Q Consensus 226 ~~--------------~~~~~~~~l~~~l~~-~kr~LlVlDdv~ 254 (566)
.. +.....+.+...+.+ .++..+||||--
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH 139 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYH 139 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 21 111233344443332 468899999953
No 110
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.69 E-value=0.0024 Score=63.63 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=37.7
Q ss_pred CccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.++.++++++++. ....+++.++|.+|.||||||+.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 68899999999999986 23458899999999999999998876
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0072 Score=64.02 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|..++..+... .+.++|.+|+||||+|+.+++
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999889898888876654 559999999999999999987
No 112
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.017 Score=65.30 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=38.4
Q ss_pred CccchHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS---DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++||+.+++.|...+. .+...++.+.|..|||||+++++|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 36899999999998886 45668999999999999999999999
No 113
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.61 E-value=0.011 Score=55.37 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=49.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHc-C---CC------CcccchHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKL-G---LV------SCEKVETRRANR 235 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l-~---~~------~~~~~~~~~~~~ 235 (566)
..+++.|+|.+|+|||++|.++.. .++|+.... +....+.+.. +.. . .. .+..........
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 358999999999999999988765 578888865 6665554432 221 0 00 000111223445
Q ss_pred HHHHHhcCCeEEEEEeCCC
Q 045507 236 LYERLKREKKILIVLDNIW 254 (566)
Q Consensus 236 l~~~l~~~kr~LlVlDdv~ 254 (566)
+.+.+..++.-+||+|-+.
T Consensus 89 l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHhhcCccEEEEeCcH
Confidence 5555544345689999884
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.009 Score=63.45 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+++..+.+. .+.++|..|+||||+|+.+.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999877665 468999999999999999988
No 115
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.57 E-value=0.0013 Score=63.82 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=93.1
Q ss_pred cccccEEEeecCCCCCCCCC------CCCCccceEEecccccccc-cCCChHHHhcCccCcEEEecCCcccc-----CCh
Q 045507 429 LKQCHAISLLNSSIPELPEG------LECPHLDFLLMVCKDTLIE-TNIPEKFFSRIKKLKDVDMARMWLFS-----LPS 496 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~------~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~ 496 (566)
+.++|.+..+.|.+..-+.. ...+.|..+.+..+.-... ..+...-+..+++|++||+..|.++. +.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45788888888877554322 1356788888876542101 11223346789999999999998774 446
Q ss_pred hhhcccccceeeccCcccCC--ccc----c-ccCccCcEEeccCCCCC-----ccchhhcCCCCCCEEeccCCCCC
Q 045507 497 SIDLLVNLQILCLHQYMLGD--IAI----I-GKLKNLEILSIWGPDIK-----TLPEELGQLTKLRQLDLVNCFQL 560 (566)
Q Consensus 497 ~i~~L~~L~~L~L~~~~l~~--p~~----i-~~L~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~c~~l 560 (566)
.++.+++||.|++..|.+.. -.. + ...++|++|.+.+|.+. .+-..+...+.|..|+|++| .+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 77888999999999998776 211 1 23789999999999654 35556788999999999995 44
No 116
>PRK06696 uridine kinase; Validated
Probab=96.57 E-value=0.0034 Score=59.37 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALS---DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46777788887775 35678999999999999999999987
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.56 E-value=0.0081 Score=68.32 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=39.1
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++||+.++.+++..|......-+.++|.+|+|||++|+.+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999998866666677899999999999998877
No 118
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.55 E-value=0.0043 Score=61.94 Aligned_cols=170 Identities=21% Similarity=0.316 Sum_probs=100.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCe
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKK 245 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 245 (566)
..+.+.++|.|||||||++-++.+ .+.++....-.+...+.-.....++.....- ......+...... +|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~-rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD-RR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh-hh
Confidence 468899999999999999988877 4445544444555555555555566543221 2234455556654 89
Q ss_pred EEEEEeCCCCccc------ccccccc---------------cCCCCC--------CC--------------ccccCccch
Q 045507 246 ILIVLDNIWKHVD------LESIGIP---------------FGDEHK--------GY--------------DDVENLKLK 282 (566)
Q Consensus 246 ~LlVlDdv~~~~~------~~~~~~~---------------~~~~~~--------g~--------------~~~~~~~~~ 282 (566)
.++|+||..+... |.-+... .++... +. .-.-...-.
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 9999999765421 1111110 000000 00 111122334
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHH-Hhcc--CCCCccchhhhhhhhhhHHhhhc
Q 045507 283 STAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRE-LRIR--TPSVVNFEKVRAGCVRATEETFS 347 (566)
Q Consensus 283 ~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~-l~~~--~~~~~~~~~~~~~~~~~l~lsy~ 347 (566)
..+.+|.++..|.|++|...++..+.....+...-++. +... -.... ..-.......+..||.
T Consensus 170 a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a--~~~~qtl~asl~ws~~ 235 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLA--VLRQQTLRASLDWSYA 235 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccc--hhHHHhccchhhhhhH
Confidence 56789999999999999999999998877766555544 1111 11111 1124456778888887
No 119
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0093 Score=63.45 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=38.5
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|...+..+.+ ..+.++|..|+||||+|+.+++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999998886655 4578999999999999999987
No 120
>PRK08116 hypothetical protein; Validated
Probab=96.54 E-value=0.03 Score=54.41 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=41.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKIL 247 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 247 (566)
.-+.++|..|+|||.||.++++ .+++++ ...++..+......... .....+.+.+.+ - =|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~-~-dl 181 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLVN-A-DL 181 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhcC-C-CE
Confidence 4588999999999999999998 334443 34455555544332111 112234455553 2 38
Q ss_pred EEEeCCC
Q 045507 248 IVLDNIW 254 (566)
Q Consensus 248 lVlDdv~ 254 (566)
|||||+.
T Consensus 182 LviDDlg 188 (268)
T PRK08116 182 LILDDLG 188 (268)
T ss_pred EEEeccc
Confidence 9999984
No 121
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.008 Score=66.50 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=39.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceE-EEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSI-IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+++..+.+.- +.++|..|+||||+|+.+++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999988777655 58999999999999999998
No 122
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.015 Score=59.27 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=38.6
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+.+.+..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 45688999999999988886655 4578999999999999999988
No 123
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.011 Score=61.63 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=60.9
Q ss_pred CCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHH
Q 045507 152 YESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~ 217 (566)
...+-|.+..+.++.+.+. . ...+=|.++|++|.|||.||+++.+ .+-++.++.+ +|+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp--------eiv 260 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP--------EIV 260 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch--------hhh
Confidence 3456678888888777654 1 2345688999999999999999999 6666666654 233
Q ss_pred HHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 218 EKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
....+. ..+.+.++.+.-.+.-.+++++|+++-.
T Consensus 261 SGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 261 SGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred cccCcc-----cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 222211 1234445555554456899999998643
No 124
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.058 Score=58.85 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=38.7
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999887665 4568999999999999998888
No 125
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.021 Score=57.06 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+.+.+..+.. ....++|..|+||||+|+.++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~ 48 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAL 48 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHH
Confidence 3567888889999999886655 5668999999999999999988
No 126
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0069 Score=62.88 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=39.5
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..+..|..++..+.+. .+.++|..|+||||+|+.+++
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999988877764 589999999999999999988
No 127
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0022 Score=71.06 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++||++++.++++.|......-+.++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 56899999999999988865455567899999999999999886
No 128
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.0076 Score=64.33 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc---ceEEE
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR---KVDFS 201 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~---~~~wv 201 (566)
....++|++..++.+.+.+..+.+ ..+.++|+.|+||||+|+.+.+ |.-|.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~ 68 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPK 68 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 345788999999999998876554 4688999999999999999988 44454
No 129
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.40 E-value=0.011 Score=55.79 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+|..|.||||+...+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988766
No 130
>PRK08727 hypothetical protein; Validated
Probab=96.39 E-value=0.013 Score=55.74 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCccchH-HHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRL-STLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~-~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|++.. ..+..+...........+.|+|..|+|||.|++.+++
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444333 3344433333333345699999999999999999877
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.36 E-value=0.015 Score=54.58 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCccchHHHHHHHHHH----HhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNA----LSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~----L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|-+..++.|++- +......-+.+||..|.|||++++++.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 345677877777766653 3345567788899999999999999987
No 132
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.013 Score=62.88 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=39.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999987664 5679999999999999999988
No 133
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.33 E-value=0.021 Score=64.29 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+.+++. .....++.++|.+|+|||++|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 347788888999888764 12346899999999999999999998
No 134
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.02 Score=54.63 Aligned_cols=82 Identities=24% Similarity=0.297 Sum_probs=52.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc-------------
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------------- 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------------- 226 (566)
...++.|+|.+|+|||++|.+++- .++|++....++...+.. +++..+.....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 458999999999999999998852 568888877777655433 33333221110
Q ss_pred cchHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 045507 227 KVETRRANRLYERLKRE-KKILIVLDNIWK 255 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 255 (566)
.........+.+.+.+. +--+||+|-+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11122344555556555 778999999853
No 135
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.32 E-value=0.0045 Score=62.63 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=39.6
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++.+..++..+..+.+.++|..|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988877767789999999999999999887
No 136
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.019 Score=60.29 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+..
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3457889999999888888876665 789999999999999999876
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.30 E-value=0.0093 Score=61.78 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=37.8
Q ss_pred CCCCCCCccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 148 PHKGYESFESRLSTLKAIQNALS----D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|.....++.|.+..+++|.+.+. . ...+-+.++|.+|.|||++|+.+++
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44445667888888888877663 1 2345688999999999999999999
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.24 E-value=0.055 Score=60.65 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=37.6
Q ss_pred CCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.++.+++|++++. .....++.++|.+|+||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999998886 13456899999999999999999998
No 139
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.24 E-value=0.012 Score=62.68 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=53.4
Q ss_pred CCCCCCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~ 213 (566)
|.....++.|-+..++++.+.+. . ...+-+.++|.+|.|||++|+.+++ ..-++.++.. .+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~----~~~ 125 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS----DFV 125 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHH----HHH
Confidence 33445567787776665554332 1 1234588999999999999999998 3334443321 111
Q ss_pred HHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 214 GDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 214 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
... .+. .......+.+......+.+|++|+++..
T Consensus 126 ~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 126 EMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred HHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 110 010 0112233333333345789999998643
No 140
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.006 Score=57.78 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCCCccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS-----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|+|.++.++++.=.+. +..+-.+.++|++|.||||||.-+++
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 34578999988888776664 45678899999999999999999999
No 141
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.22 E-value=0.012 Score=53.69 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=22.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 176 IIGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
||.|+|++|+||||+|+.+....-+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999998833334444
No 142
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.024 Score=60.62 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=38.7
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+.+++..+.+. .+.++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999998876665 468999999999999999987
No 143
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.19 E-value=0.016 Score=57.34 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++-|+|.+|+||||||.++.. .++|+.....++.. .++.++.+.+. ....+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 458999999999999999988765 56788777666553 34444433211 1223334444444
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
++++.--+||+|-|..
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 4445667999999854
No 144
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=0.012 Score=62.70 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=51.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHh-cCCeEE
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLK-REKKIL 247 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~L 247 (566)
.-++..++|.+|+||||||..+++ .+.=|+.|+......+-..|...+.... .+. .+++.-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~adsrP~C 390 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADSRPVC 390 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCCCcce
Confidence 458999999999999999999999 5677888888888877777765553221 111 146777
Q ss_pred EEEeCCCCc
Q 045507 248 IVLDNIWKH 256 (566)
Q Consensus 248 lVlDdv~~~ 256 (566)
+|+|.++-.
T Consensus 391 LViDEIDGa 399 (877)
T KOG1969|consen 391 LVIDEIDGA 399 (877)
T ss_pred EEEecccCC
Confidence 788887644
No 145
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.019 Score=61.99 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999887666 5568999999999999999976
No 146
>PRK12377 putative replication protein; Provisional
Probab=96.14 E-value=0.032 Score=53.34 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=41.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCe
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKK 245 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 245 (566)
+...+.++|..|+|||.||.++.+ .+.++++ .+++..|-...... . ....+.+.+. +-
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~------~~l~~~l~~~~~~~---~----~~~~~l~~l~--~~ 164 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV------PDVMSRLHESYDNG---Q----SGEKFLQELC--KV 164 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH------HHHHHHHHHHHhcc---c----hHHHHHHHhc--CC
Confidence 346789999999999999999998 3444433 24444443332111 0 1123444453 45
Q ss_pred EEEEEeCCC
Q 045507 246 ILIVLDNIW 254 (566)
Q Consensus 246 ~LlVlDdv~ 254 (566)
=|||+||+.
T Consensus 165 dLLiIDDlg 173 (248)
T PRK12377 165 DLLVLDEIG 173 (248)
T ss_pred CEEEEcCCC
Confidence 799999994
No 147
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.0022 Score=35.86 Aligned_cols=21 Identities=29% Similarity=0.649 Sum_probs=14.1
Q ss_pred cCcEEeccCCCCCccchhhcC
Q 045507 525 NLEILSIWGPDIKTLPEELGQ 545 (566)
Q Consensus 525 ~L~~L~l~~~~l~~lP~~i~~ 545 (566)
+|++|+|++|++..+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777766677766554
No 148
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.023 Score=61.55 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=39.7
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345788999999999999887665 4679999999999999999987
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.002 Score=61.13 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=23.1
Q ss_pred cccccceeeccCcccCC-cccc-ccCccCcEEeccCC--CCCccchhhcCCCCCCEEeccC
Q 045507 500 LLVNLQILCLHQYMLGD-IAII-GKLKNLEILSIWGP--DIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~-p~~i-~~L~~L~~L~l~~~--~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
+|++|++|+|+.|.+.. ..+. -.+.+|++|-|+++ .+.++...+..+++++.|+++.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 44444444444444433 1222 13344444444444 2223333344444444444443
No 150
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00091 Score=62.77 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC---ccccccCccCcEEeccCC-CCCccch-----hhc
Q 045507 474 FFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD---IAIIGKLKNLEILSIWGP-DIKTLPE-----ELG 544 (566)
Q Consensus 474 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~-~l~~lP~-----~i~ 544 (566)
+..+|+.|.||.|+-|.|++|- .+..+++|+-|+|+.|.|.+ ..-+.+|++|++|.|..| ...+-+. -+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4567777888888877777753 34567777777787777666 445667777777777655 2222222 145
Q ss_pred CCCCCCEEe
Q 045507 545 QLTKLRQLD 553 (566)
Q Consensus 545 ~L~~L~~L~ 553 (566)
-|++|+.|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 666666654
No 151
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.038 Score=59.35 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=67.0
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh---------cCC---ceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS---------DLN---VSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~---------~~~---~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
.|.....++-|-++.+..|.+-+. ..+ .+=|.++|.+|.|||-+|++|+- ...|.+|..+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP------ 739 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ 739 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH------
Confidence 455556677788888888888764 223 34578899999999999999998 5567776554
Q ss_pred HHHHHH-HcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 213 QGDIAE-KLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 213 ~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
+++. .+|. ..+...++.++-++.++|.|.||.+++.
T Consensus 740 --ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1211 1121 1234566777777779999999998754
No 152
>PRK09354 recA recombinase A; Provisional
Probab=96.05 E-value=0.022 Score=56.95 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++-|+|..|+||||||.++.. .++|+.....++.. .++.++.+.+. .+..+....+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 458999999999999999998765 67888887777753 34444433211 1223334444444
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
+++++--+||+|-|..
T Consensus 134 i~s~~~~lIVIDSvaa 149 (349)
T PRK09354 134 VRSGAVDLIVVDSVAA 149 (349)
T ss_pred hhcCCCCEEEEeChhh
Confidence 4555667999999864
No 153
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.037 Score=58.53 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..+..|...+..+.. ..+.++|..|+||||+|+.+++
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345678999999988887776554 5788999999999999999988
No 154
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.00 E-value=0.031 Score=55.52 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
..+++-|+|.+|+|||+++.+++- .++|++....|.+.++.+ +++.++.+... .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 457899999999999999987651 679999999898888754 56666543221 011
Q ss_pred ---HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 230 ---TRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 230 ---~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.+....+...+..++--|||+|.+..
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 12334444444444556899999853
No 155
>PRK09087 hypothetical protein; Validated
Probab=95.99 E-value=0.037 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.+.|+|..|+|||+|++.++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998886
No 156
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.97 E-value=0.033 Score=52.74 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKII 212 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i 212 (566)
...++.|+|.+|+|||++|.+++. .++|+... .+....+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999998875 67888877 5555544
No 157
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.97 E-value=0.025 Score=56.26 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEec
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVS 204 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~ 204 (566)
...+.++|||.+|.|||.+|+.+++ ..-++.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 3467899999999999999999999 44444444
No 158
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.95 E-value=0.022 Score=56.43 Aligned_cols=78 Identities=24% Similarity=0.257 Sum_probs=50.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++-|+|.+|+||||||.+++- .++|+.....+++. .++.++.+.+. .+..+....+...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 457899999999999999998764 57888877766653 23444432111 1223334444444
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
++++.--+||+|-|..
T Consensus 129 i~s~~~~lIVIDSvaa 144 (325)
T cd00983 129 VRSGAVDLIVVDSVAA 144 (325)
T ss_pred HhccCCCEEEEcchHh
Confidence 4455667899999853
No 159
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.95 E-value=0.0051 Score=59.78 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=29.7
Q ss_pred HhcCccCcEEEecCCcccc-----CChhhhcccccceeeccCcccCC------ccccccCccCcEEeccCCCC
Q 045507 475 FSRIKKLKDVDMARMWLFS-----LPSSIDLLVNLQILCLHQYMLGD------IAIIGKLKNLEILSIWGPDI 536 (566)
Q Consensus 475 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~l~~~~l 536 (566)
|...+.|..+.++.|.|.. +-..+..++||+.|+|..|-++. -..++.+++|+.|++++|.+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 3444455555555554432 11334455555666655554433 12334445555555555544
No 160
>PRK06547 hypothetical protein; Provisional
Probab=95.94 E-value=0.011 Score=53.30 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=26.5
Q ss_pred HHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 165 IQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 165 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...+......+|+|.|.+|+||||+|+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444466788999999999999999999987
No 161
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.93 E-value=0.047 Score=54.08 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCc
Q 045507 157 SRLSTLKAIQNALSD----LNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC 225 (566)
Q Consensus 157 gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~ 225 (566)
+|........+++.. ...+-+.++|..|+|||.||.++++ .+.++++. .++..+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~------~l~~~lk~~~~~~-- 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP------EFIRELKNSISDG-- 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH------HHHHHHHHHHhcC--
Confidence 455555555555542 2346789999999999999999998 34555443 4555554444211
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 226 EKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 226 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
......+.+. +-=||||||+-
T Consensus 207 ------~~~~~l~~l~--~~dlLiIDDiG 227 (306)
T PRK08939 207 ------SVKEKIDAVK--EAPVLMLDDIG 227 (306)
T ss_pred ------cHHHHHHHhc--CCCEEEEecCC
Confidence 1223334444 45689999984
No 162
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.92 E-value=0.21 Score=47.60 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEecc
Q 045507 159 LSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQ 205 (566)
Q Consensus 159 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~ 205 (566)
...+..+..+......+.+.|+|..|+|||+|++.+++ .+.++++..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 33455555555455567899999999999999999887 256666643
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.26 Score=54.24 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCccchHHHHHHHHHHHh---------cCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCCHHHHHHH--H
Q 045507 153 ESFESRLSTLKAIQNALS---------DLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPNIKIIQGD--I 216 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~---------~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~~~~i~~~--i 216 (566)
..++|.+.+++.+.+.+. +....+...+|+.|+|||.||+++.. ....+. +|+.+.+.. +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR----~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR----IDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee----echHHHHHHHHH
Confidence 357899999999988875 23457888899999999999998887 122222 345544433 2
Q ss_pred HHHcCCCCcccchHHHHHHHHHHHhcCCeE-EEEEeCCCCc
Q 045507 217 AEKLGLVSCEKVETRRANRLYERLKREKKI-LIVLDNIWKH 256 (566)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~ 256 (566)
.+-+|.+.......+ ...+.+..++ |+| +|.||.+...
T Consensus 567 SrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 567 SRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 233343333222222 4566677775 777 7778998744
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.89 E-value=0.016 Score=52.52 Aligned_cols=66 Identities=29% Similarity=0.396 Sum_probs=39.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCe
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKK 245 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 245 (566)
...-+.++|..|+|||.||..+.+ .+.|+++ .+++..+-. ...... ...+.+.+.+ -
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~~--~ 109 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLKR--V 109 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHHT--S
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec------Cceeccccc----cccccc----hhhhcCcccc--c
Confidence 345699999999999999999887 4566643 444444432 111111 2233445543 4
Q ss_pred EEEEEeCCC
Q 045507 246 ILIVLDNIW 254 (566)
Q Consensus 246 ~LlVlDdv~ 254 (566)
=||||||+-
T Consensus 110 dlLilDDlG 118 (178)
T PF01695_consen 110 DLLILDDLG 118 (178)
T ss_dssp SCEEEETCT
T ss_pred cEecccccc
Confidence 578899984
No 165
>PRK07667 uridine kinase; Provisional
Probab=95.89 E-value=0.011 Score=54.37 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=26.7
Q ss_pred HHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 163 KAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 163 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.+.+. .....+|+|.|.+|+||||+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44555554 34457999999999999999998887
No 166
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.071 Score=49.96 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=60.5
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|...+.++-|..+.++++.+... -+..+=|.++|.+|.|||-+|++|+| ...|+.|-.. +-
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs---el 247 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS---EL 247 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH---HH
Confidence 344556677788888888776543 13456688999999999999999999 3344444221 11
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
+++- .+. ......++.+..+..|-++|.||.++
T Consensus 248 vqky----vge------garmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 248 VQKY----VGE------GARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHH----hhh------hHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111 111 12234555555666688999999885
No 167
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.88 E-value=0.05 Score=50.13 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-------ceEEEEecc-CCCHHHHHHHHHHHcCCC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQ-NPNIKIIQGDIAEKLGLV 223 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~-~~~~~~i~~~i~~~l~~~ 223 (566)
.+|+.+||..|+||||.+-.++. .+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 36899999999999987766655 566666532 234555567778888755
No 168
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.88 E-value=0.013 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999998887
No 169
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.87 E-value=0.01 Score=62.47 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=39.2
Q ss_pred CCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 358899999999999983 45668999999999999999999988
No 170
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.027 Score=61.03 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=39.1
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+.+
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999888876664 468999999999999999988
No 171
>CHL00176 ftsH cell division protein; Validated
Probab=95.80 E-value=0.04 Score=60.11 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=51.5
Q ss_pred CCCccchHHHHHHHHHH---Hhc---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHH
Q 045507 152 YESFESRLSTLKAIQNA---LSD---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~---L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~ 217 (566)
..++.|.++.++++.+. +.. ...+-+.++|.+|.|||++|+.+++ ..-|+.++.. .+....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s----~f~~~~- 256 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGS----EFVEMF- 256 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHH----HHHHHh-
Confidence 34566766665554443 332 1234689999999999999999998 4444444321 111000
Q ss_pred HHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 218 EKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.+. .......+.+......+++|++|+++.
T Consensus 257 --~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 257 --VGV------GAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred --hhh------hHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 000 011223333333345789999999964
No 172
>PF14516 AAA_35: AAA-like domain
Probab=95.79 E-value=0.13 Score=51.78 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=66.3
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccC-----CCHHHHHHHHH-
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQN-----PNIKIIQGDIA- 217 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~-----~~~~~i~~~i~- 217 (566)
+.+-.+.|...-+++.+.+.+. ...+.|.|.-.+|||+|...+.+ .++++++... .+..++++.++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 4455668886677777776543 57899999999999999988876 5667776542 24555555554
Q ss_pred ---HHcCCCCccc--------chHHHHHHHHHHHh-c-CCeEEEEEeCCCCc
Q 045507 218 ---EKLGLVSCEK--------VETRRANRLYERLK-R-EKKILIVLDNIWKH 256 (566)
Q Consensus 218 ---~~l~~~~~~~--------~~~~~~~~l~~~l~-~-~kr~LlVlDdv~~~ 256 (566)
++++....-. +.......+.+.+. . .++.+|++|+++..
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 4554432110 11222333444432 1 57999999999754
No 173
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.78 E-value=0.0076 Score=51.22 Aligned_cols=21 Identities=52% Similarity=0.887 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 045507 177 IGVYGMGGIGKTTLVKEVARK 197 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~~ 197 (566)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.78 E-value=0.072 Score=50.80 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchH
Q 045507 160 STLKAIQNALSD--LNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVET 230 (566)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~ 230 (566)
..+....++..+ .....+.++|.+|+|||+||.++.+ .+.++ +..++...+-..... ...
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i------t~~~l~~~l~~~~~~--~~~--- 151 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII------TVADIMSAMKDTFSN--SET--- 151 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------EHHHHHHHHHHHHhh--ccc---
Confidence 345555555432 2235788999999999999999988 33444 234455444433311 111
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 231 RRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 231 ~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
....+.+.+. +.=+||+||+..
T Consensus 152 -~~~~~l~~l~--~~dlLvIDDig~ 173 (244)
T PRK07952 152 -SEEQLLNDLS--NVDLLVIDEIGV 173 (244)
T ss_pred -cHHHHHHHhc--cCCEEEEeCCCC
Confidence 1223444454 245888899853
No 175
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.78 E-value=0.053 Score=52.31 Aligned_cols=81 Identities=32% Similarity=0.342 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc-------------
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------------- 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------------- 226 (566)
...+.=|+|.+|+|||.|+-+++- .++|++....|....+. +|++..+.....
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 347899999999999999977742 48999999999988875 466655432111
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 227 KVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
....+....+...+.+.+=-|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 0112233444444544566799999985
No 176
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0045 Score=57.90 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=38.9
Q ss_pred cCccCcEEEecCC--ccc-cCChhhhcccccceeeccCcccCCc---cccccCccCcEEeccCCCCCccc----hhhcCC
Q 045507 477 RIKKLKDVDMARM--WLF-SLPSSIDLLVNLQILCLHQYMLGDI---AIIGKLKNLEILSIWGPDIKTLP----EELGQL 546 (566)
Q Consensus 477 ~l~~Lr~L~l~~~--~~~-~lp~~i~~L~~L~~L~L~~~~l~~p---~~i~~L~~L~~L~l~~~~l~~lP----~~i~~L 546 (566)
.+++|+.|.++.| .+. .++-...++++|++|++++|+++.+ ....+|.+|..|++.+|....+- ..+.-|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4555555666555 221 2333333446666666666655432 23345555556666665433331 124455
Q ss_pred CCCCEEecc
Q 045507 547 TKLRQLDLV 555 (566)
Q Consensus 547 ~~L~~L~l~ 555 (566)
++|++|+-.
T Consensus 143 ~~L~~LD~~ 151 (260)
T KOG2739|consen 143 PSLKYLDGC 151 (260)
T ss_pred hhhcccccc
Confidence 555555543
No 177
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.77 E-value=0.043 Score=52.87 Aligned_cols=83 Identities=22% Similarity=0.351 Sum_probs=52.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccc------hH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKV------ET 230 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~------~~ 230 (566)
..+.++|+|-.|.|||||++.+++ .++++-+.+.. .+.++...+...-.... .+.. ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457889999999999999999887 34556666554 45566666554321110 1111 11
Q ss_pred HHHHHHHHHHh-c-CCeEEEEEeCCCC
Q 045507 231 RRANRLYERLK-R-EKKILIVLDNIWK 255 (566)
Q Consensus 231 ~~~~~l~~~l~-~-~kr~LlVlDdv~~ 255 (566)
.....+-++++ + |+.+|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12334556664 2 7899999999853
No 178
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.77 E-value=0.0079 Score=55.54 Aligned_cols=21 Identities=57% Similarity=0.843 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 179
>CHL00181 cbbX CbbX; Provisional
Probab=95.75 E-value=0.063 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.++|.+|.||||+|+.+++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999976
No 180
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.74 E-value=0.054 Score=47.96 Aligned_cols=32 Identities=38% Similarity=0.554 Sum_probs=25.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCC
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNP 207 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~ 207 (566)
++.|+|.+|+||||++..+.. .+.|+.....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 468999999999999998866 46666665544
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.72 E-value=0.019 Score=49.66 Aligned_cols=39 Identities=31% Similarity=0.340 Sum_probs=30.2
Q ss_pred EEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHH
Q 045507 177 IGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~ 215 (566)
|.++|.+|+|||+||+.++. ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceee
Confidence 67899999999999999998 4455677777777776543
No 182
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.72 E-value=0.044 Score=51.26 Aligned_cols=90 Identities=24% Similarity=0.372 Sum_probs=59.6
Q ss_pred CCCccchHHHHHH---HHHHHhc------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHc
Q 045507 152 YESFESRLSTLKA---IQNALSD------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKL 220 (566)
Q Consensus 152 ~~~~~gr~~~~~~---l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l 220 (566)
..+++|.++++.+ |+++|.+ ...+-|..+|.+|.|||-+|+++.+ .+-++.|..+ +++ -++.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat----~li---GehV 192 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKAT----ELI---GEHV 192 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechH----HHH---HHHh
Confidence 3567888776543 6677763 4578899999999999999999999 4444433321 111 1222
Q ss_pred CCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 221 GLVSCEKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
| +....+.++.++....-+|.+.+|.++
T Consensus 193 G------dgar~Ihely~rA~~~aPcivFiDE~D 220 (368)
T COG1223 193 G------DGARRIHELYERARKAAPCIVFIDELD 220 (368)
T ss_pred h------hHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 2 123456667666665568999999875
No 183
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.05 Score=56.97 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=47.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEe
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLD 251 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlD 251 (566)
..=|.++|++|.|||-||++|+| +.-|++|..+ +++.. ..|. ....+..+.++-+..-.|.|.||
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP----ELlNk---YVGE------SErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP----ELLNK---YVGE------SERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCH----HHHHH---Hhhh------HHHHHHHHHHHhhcCCCeEEEec
Confidence 44578999999999999999999 6677777654 11111 1111 12235556666665679999999
Q ss_pred CCCCc
Q 045507 252 NIWKH 256 (566)
Q Consensus 252 dv~~~ 256 (566)
.++..
T Consensus 612 EiDaL 616 (802)
T KOG0733|consen 612 EIDAL 616 (802)
T ss_pred chhhc
Confidence 98643
No 184
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.71 E-value=0.0042 Score=34.71 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=13.8
Q ss_pred cCcEEEecCCccccCChhhhc
Q 045507 480 KLKDVDMARMWLFSLPSSIDL 500 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~lp~~i~~ 500 (566)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366777777777766666554
No 185
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.68 E-value=0.094 Score=52.88 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcC----CceEEEEEecCCCcHH-HHHHHHhc--------ceEEEEeccC-CCHHHHHHHHHHHcCCCCc
Q 045507 160 STLKAIQNALSDL----NVSIIGVYGMGGIGKT-TLVKEVAR--------KVDFSEVSQN-PNIKIIQGDIAEKLGLVSC 225 (566)
Q Consensus 160 ~~~~~l~~~L~~~----~~~vv~I~G~gGiGKT-tLa~~v~~--------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~ 225 (566)
+....+..++.++ +-+++.+||+.|+||| |||+..+. .+..++...- -...+-++.-++-++.+..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 3444555555443 4799999999999998 56665444 4566554322 1233333444555666554
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 045507 226 EKVETRRANRLYERLKREKKILIVLDNI 253 (566)
Q Consensus 226 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv 253 (566)
..........-...+.+ + =+|.+|-+
T Consensus 265 vv~~~~el~~ai~~l~~-~-d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIEALRD-C-DVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHHHhhc-C-CEEEEeCC
Confidence 43333333333344443 3 34444554
No 186
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.025 Score=63.39 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|..++..+.+. .+.++|..|+||||+|+.+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 446889999999999998876665 478999999999999999977
No 187
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.67 E-value=0.031 Score=62.79 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=36.2
Q ss_pred CCCCccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSD-------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|.+..++++.+.+.. ...+-+.++|.+|.||||+|+.+++
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 344577999988888776531 2345688999999999999999998
No 188
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.039 Score=60.07 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|..++..+.+ ..+.++|..|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999888886655 4568999999999999999987
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.64 E-value=0.022 Score=61.71 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 149 HKGYESFESRLSTLKAIQNALSD-----LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.....++|.++.++++..++.. ...+++.|+|..|+||||+++.++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44556788889999999888863 2346799999999999999999987
No 190
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.61 E-value=0.011 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 191
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.61 E-value=0.031 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+..+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 192
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.61 E-value=0.017 Score=56.05 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=30.7
Q ss_pred CccchHHHHHHHHHH---Hh------------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNA---LS------------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~---L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++++.+. .. .+....+.++|.+|.||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 467777766555433 21 12445678999999999999999976
No 193
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.61 E-value=0.01 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...+|+|+|.+|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 194
>PRK08233 hypothetical protein; Provisional
Probab=95.61 E-value=0.01 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 195
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.069 Score=51.40 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccch
Q 045507 158 RLSTLKAIQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVE 229 (566)
Q Consensus 158 r~~~~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 229 (566)
+...+..+..... -+...-+.++|.+|+|||.||.++.+ .+.++ ...++..++.......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~------~~~el~~~Lk~~~~~~------ 155 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI------TAPDLLSKLKAAFDEG------ 155 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE------EHHHHHHHHHHHHhcC------
Confidence 3444444443332 12566789999999999999999988 34444 3445555555444321
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 230 TRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 230 ~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
....++.+.+. +-=||||||+-.
T Consensus 156 -~~~~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 156 -RLEEKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred -chHHHHHHHhh--cCCEEEEecccC
Confidence 12234444444 345899999853
No 196
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.0059 Score=57.13 Aligned_cols=83 Identities=29% Similarity=0.383 Sum_probs=57.7
Q ss_pred hcCccCcEEEecCCccccCChhhhcccccceeeccCc--ccCC--ccccccCccCcEEeccCCCCC---ccchhhcCCCC
Q 045507 476 SRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQY--MLGD--IAIIGKLKNLEILSIWGPDIK---TLPEELGQLTK 548 (566)
Q Consensus 476 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~--~l~~--p~~i~~L~~L~~L~l~~~~l~---~lP~~i~~L~~ 548 (566)
..+..|..|++.++.++++- .+-.|++|++|.++.| .+.. +....++++|++|++++|+++ +++ .+..|.+
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34455566666666544432 2224789999999999 4444 444556799999999999654 443 3678889
Q ss_pred CCEEeccCCCCC
Q 045507 549 LRQLDLVNCFQL 560 (566)
Q Consensus 549 L~~L~l~~c~~l 560 (566)
|..|++.+|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 999999998643
No 197
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.53 E-value=0.069 Score=53.53 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=53.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
..+++-|+|.+|+|||+|+.+++- .++|+....+|.+.++.+ +++.++.+... .+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 457888999999999999987741 579999999999888765 55666543211 111
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 230 T---RRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 230 ~---~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
. .....+...+..++--|||+|.+.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 2 222333334433345588999985
No 198
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.49 E-value=0.068 Score=50.55 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=32.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~ 213 (566)
...++.|+|.+|+|||++|.++.- .++|+.....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 457999999999999999998753 45788777777765544
No 199
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.034 Score=50.25 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|.+|+||||+|+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 200
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.48 E-value=0.016 Score=63.28 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..+..+...+.......+.|+|.+|+||||+|+.+++
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 346789999999888877766677899999999999999999976
No 201
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.43 E-value=0.067 Score=50.33 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=28.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPN 208 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~ 208 (566)
..+++.|.|.+|+||||+|.+++. .++|+.....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 458999999999999999998875 567877655543
No 202
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.42 E-value=0.1 Score=53.22 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=33.4
Q ss_pred CccchHHHHHHHHHHHhcC--------------CceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSDL--------------NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+++++.+.-.+.+. ..+-|.++|.+|+|||++|+.+..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 4778888887776554421 236789999999999999999988
No 203
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.40 E-value=0.014 Score=50.76 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999996
No 204
>PRK03839 putative kinase; Provisional
Probab=95.37 E-value=0.014 Score=53.09 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=23.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc--ceEEEEec
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR--KVDFSEVS 204 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~ 204 (566)
.|.|.|++|+||||+|+.+++ ...++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 488999999999999999999 44455443
No 205
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.33 E-value=0.013 Score=43.81 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998776
No 206
>PRK08181 transposase; Validated
Probab=95.33 E-value=0.062 Score=52.05 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=40.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKI 246 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 246 (566)
..-+.++|.+|+|||.||..+.+ .+.|++ ..++...+..... .. ......+.+. +-=
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~------~~~L~~~l~~a~~----~~----~~~~~l~~l~--~~d 169 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR------TTDLVQKLQVARR----EL----QLESAIAKLD--KFD 169 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee------HHHHHHHHHHHHh----CC----cHHHHHHHHh--cCC
Confidence 35589999999999999999876 344443 3445555533211 11 1223334443 345
Q ss_pred EEEEeCCC
Q 045507 247 LIVLDNIW 254 (566)
Q Consensus 247 LlVlDdv~ 254 (566)
|||+||+.
T Consensus 170 LLIIDDlg 177 (269)
T PRK08181 170 LLILDDLA 177 (269)
T ss_pred EEEEeccc
Confidence 99999984
No 207
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.066 Score=57.63 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=37.4
Q ss_pred CCCccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLN-VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|.+.+..+. ...+.++|..|+||||+|+.+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3467898888888888887665 46788899999999999999988
No 208
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.013 Score=50.78 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.-|.|.|++|+||||+++.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4589999999999999999987
No 209
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.08 Score=54.32 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHHHhcCC----------ceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSDLN----------VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.|.+.+..+. ..-+.++|+.|+||||+|+.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999998887543 35588999999999999999876
No 210
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.031 Score=50.92 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=33.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHH
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~ 217 (566)
..+|+|-||=|+||||||+.+.+ ..+.-.+.+++=+..+..+.-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHH
Confidence 57899999999999999999999 455555666655555555543
No 211
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.30 E-value=0.12 Score=49.33 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=30.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~ 215 (566)
..+++.|.|.+|.|||++|.++.. .++|++... .+.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 458999999999999999987543 577877665 44455544
No 212
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.015 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999987764
No 213
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.024 Score=58.65 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|.+++.++.+. .+.++|+.|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999998888877665 488999999999999999988
No 214
>PRK06762 hypothetical protein; Provisional
Probab=95.26 E-value=0.015 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.21 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998875
No 216
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.18 E-value=0.13 Score=48.76 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.8
Q ss_pred CceEEEEEecCCCcHHHHHHHH-hc------ceEEEEeccCCCHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEV-AR------KVDFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v-~~------~~~wv~v~~~~~~~~i~~~i 216 (566)
...++.|.|..|.||||+|.++ +. .+++++.. -...++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC--CCHHHHHHHH
Confidence 3569999999999999997554 43 45565533 3445555555
No 217
>PRK06526 transposase; Provisional
Probab=95.17 E-value=0.045 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..-+.++|.+|+|||+||..+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 45689999999999999999877
No 218
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.16 E-value=0.13 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-+.++|.+|.||||+|+.++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999977665
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=95.13 E-value=0.079 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+.|+|.+|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45678999999999999999876
No 220
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.034 Score=48.27 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=32.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCC
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVS 224 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~ 224 (566)
+|.|.|.+|.||||+|+.+.+ +.-.+ +.-.+++++++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCcee------eccHHHHHHHHHcCCCH
Confidence 689999999999999999998 33233 23356777877777653
No 221
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.16 Score=53.87 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=57.0
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|.....++-|-++.+.+|.+... -...+=|..+|++|.|||++|+++.+ ..-|+.|+.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp----- 502 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP----- 502 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH-----
Confidence 344555666666666655554432 14567789999999999999999999 5556655443
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
+++..... .....+..+.+.-+.--.++|.||.++.
T Consensus 503 ---EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 503 ---ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred ---HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 11111100 1112233444444434568888998754
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.12 E-value=0.072 Score=59.74 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=55.9
Q ss_pred CCccchHHHHHHHHHHHhc-------C--CceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALSD-------L--NVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEK 219 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~ 219 (566)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.++. ..+.++.+.-.... .+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~----~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH----TVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc----cHHHH
Confidence 3467888888888777651 1 234688999999999999999988 22333333211111 11122
Q ss_pred cCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 220 LGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 220 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
++.+..... .+....+.+.++....-+++||++...
T Consensus 530 ig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 530 IGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred hcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 222211111 111233445555434469999999754
No 223
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.018 Score=53.01 Aligned_cols=24 Identities=50% Similarity=0.736 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.+|+|.|.+|+||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 457899999999999999999998
No 224
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.058 Score=56.44 Aligned_cols=67 Identities=19% Similarity=0.384 Sum_probs=41.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREK 244 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 244 (566)
..-+.|+|..|+|||+|++.+++ .+.|++. .++...+...+... ......+.+.. +
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~~-~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYRK-K 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHHh-c
Confidence 34589999999999999999998 2344432 34555555554321 12233334432 3
Q ss_pred eEEEEEeCCCC
Q 045507 245 KILIVLDNIWK 255 (566)
Q Consensus 245 r~LlVlDdv~~ 255 (566)
.-+|++||+..
T Consensus 195 ~dvLlIDDi~~ 205 (440)
T PRK14088 195 VDVLLIDDVQF 205 (440)
T ss_pred CCEEEEechhh
Confidence 45788999863
No 225
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.091 Score=54.21 Aligned_cols=91 Identities=24% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCccchHH---HHHHHHHHHhcC--------C-ceEEEEEecCCCcHHHHHHHHhc--ce-EEEEeccCCCHHHHHHHH
Q 045507 152 YESFESRLS---TLKAIQNALSDL--------N-VSIIGVYGMGGIGKTTLVKEVAR--KV-DFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 152 ~~~~~gr~~---~~~~l~~~L~~~--------~-~~vv~I~G~gGiGKTtLa~~v~~--~~-~wv~v~~~~~~~~i~~~i 216 (566)
..++.|.|+ ++++|+++|.++ . .+=|.++|++|.|||-||++++- .+ ||...+..|+..-+-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG--- 379 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG--- 379 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc---
Confidence 345556665 567788888632 2 35588999999999999999998 33 333333444322110
Q ss_pred HHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 217 AEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
. ....+..+...-+..-+|+|.+|.++..
T Consensus 380 ---v--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 ---V--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ---c--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 0 0112333444444345789999987643
No 226
>PRK06921 hypothetical protein; Provisional
Probab=95.08 E-value=0.096 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...-+.++|..|+|||.||.++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~ 139 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN 139 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999999988
No 227
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.07 E-value=0.063 Score=54.63 Aligned_cols=81 Identities=26% Similarity=0.324 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc--chHHHHHHHHHHHhcC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK--VETRRANRLYERLKRE 243 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 243 (566)
...++.|.|.+|+|||||+.+++. .++|++... ...++.. -+..++...+.. ......+.+.+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 357999999999999999998875 456665543 3333322 234555432221 1112234455555444
Q ss_pred CeEEEEEeCCCCc
Q 045507 244 KKILIVLDNIWKH 256 (566)
Q Consensus 244 kr~LlVlDdv~~~ 256 (566)
+.-+||+|.+...
T Consensus 158 ~~~lVVIDSIq~l 170 (372)
T cd01121 158 KPDLVIIDSIQTV 170 (372)
T ss_pred CCcEEEEcchHHh
Confidence 6678999998543
No 228
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.11 Score=49.57 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=61.3
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHH
Q 045507 149 HKGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQG 214 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~ 214 (566)
.....++.|-+.+.+.|.+... ....+-|.++|++|.||+.||++|+. ..-|.+||...-+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS---- 204 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS---- 204 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH----
Confidence 3344566777777777777542 12357899999999999999999998 45555666542111
Q ss_pred HHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 215 DIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 215 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
..++. .......+.+..+..|.-+|.+|.++
T Consensus 205 ---KWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 205 ---KWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 11221 12345556666666789999999985
No 229
>PTZ00035 Rad51 protein; Provisional
Probab=95.05 E-value=0.15 Score=51.21 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=51.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
...++.|+|..|+|||||+..++- .++|+.....|+...+ ..+++.++..... .+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 458899999999999999988752 4568888777777764 3445554433211 111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 230 TR---RANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 230 ~~---~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.+ .+..+.+.+..++--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 22 222333334444556899999853
No 230
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.05 E-value=0.11 Score=52.13 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
...++-|+|.+|+|||+++..++- .++|+.....|.+.++. +|++.++..... .+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 357889999999999999986652 57999999999888764 556666543211 111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCCC
Q 045507 230 TR---RANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 230 ~~---~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
.+ .+..+...+...+--|||+|-+.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 12 22222233333456689999884
No 231
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.03 E-value=0.068 Score=50.29 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=42.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREK 244 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 244 (566)
...+-|+|..|+|||.|.+++++ .+.++ +..++...+...+.. .....+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~--------~~~~~~~~~~~~-- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD--------GEIEEFKDRLRS-- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT--------TSHHHHHHHHCT--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc--------ccchhhhhhhhc--
Confidence 35688999999999999999988 34444 344555555554432 123445566653
Q ss_pred eEEEEEeCCCC
Q 045507 245 KILIVLDNIWK 255 (566)
Q Consensus 245 r~LlVlDdv~~ 255 (566)
-=+|++||+..
T Consensus 98 ~DlL~iDDi~~ 108 (219)
T PF00308_consen 98 ADLLIIDDIQF 108 (219)
T ss_dssp SSEEEEETGGG
T ss_pred CCEEEEecchh
Confidence 35778899854
No 232
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.02 E-value=0.057 Score=56.11 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=40.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCe
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKK 245 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 245 (566)
..+.|+|..|+|||.|++++++ .+++++ ...+...+...+... ....+.+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 5688999999999999999988 233442 233444454444321 12334444542 3
Q ss_pred EEEEEeCCCC
Q 045507 246 ILIVLDNIWK 255 (566)
Q Consensus 246 ~LlVlDdv~~ 255 (566)
-+||+||+..
T Consensus 201 dlLiiDDi~~ 210 (405)
T TIGR00362 201 DLLLIDDIQF 210 (405)
T ss_pred CEEEEehhhh
Confidence 4788999964
No 233
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.018 Score=49.09 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=28.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNP 207 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~ 207 (566)
..-|.|.|.+|+||||+|..+.. ..-|+++|+-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHH
Confidence 34578999999999999999999 67788887643
No 234
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.01 E-value=0.084 Score=47.33 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred EEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcC-CeEEEEEe
Q 045507 177 IGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKRE-KKILIVLD 251 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~LlVlD 251 (566)
+.|.|..|+|||++|.++.. ..+++...+.++. ++...|..+...........+....+.+.+... +.-.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLID 80 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLID 80 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEE
Confidence 57899999999999998865 5677777777655 355565544333322222223333444444321 23368889
Q ss_pred CCC
Q 045507 252 NIW 254 (566)
Q Consensus 252 dv~ 254 (566)
.+.
T Consensus 81 clt 83 (169)
T cd00544 81 CLT 83 (169)
T ss_pred cHh
Confidence 874
No 235
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.016 Score=52.19 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc---ceEEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR---KVDFS 201 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~---~~~wv 201 (566)
+.|-+.|.+|+||||+|+++.. ...|-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 4577889999999999999988 44553
No 236
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.00 E-value=0.065 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999988
No 237
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.98 E-value=0.11 Score=49.51 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=48.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCc--------------------
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC-------------------- 225 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~-------------------- 225 (566)
..+++.|+|.+|+|||++|.++.. .++|++...+ +.++.+.+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccccc
Confidence 468999999999999999999843 6788887654 34555543 22332111
Q ss_pred -ccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 226 -EKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 226 -~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
.....+....+.+.+...+.-++|+|.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01123345555555543345578888873
No 238
>PRK13949 shikimate kinase; Provisional
Probab=94.98 E-value=0.028 Score=50.49 Aligned_cols=22 Identities=50% Similarity=0.523 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+-|.|+|+.|+||||+++.+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999998
No 239
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.98 E-value=0.029 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987644
No 240
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.97 E-value=0.13 Score=51.33 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc-------------
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------------- 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------------- 226 (566)
..+++-|+|.+|+||||++.+++- .++|+.....|+...+.+ +++.++.....
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhhceEEEecCCH
Confidence 358899999999999999988753 478999888888877654 34444432110
Q ss_pred cchHHHHHHHHHHHhcCC--eEEEEEeCCCC
Q 045507 227 KVETRRANRLYERLKREK--KILIVLDNIWK 255 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~ 255 (566)
.......+.+.+.+...+ .-+||+|.+..
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 011112344555554322 34899999854
No 241
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.15 Score=55.67 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..+..|..++..+.+ ..+.++|..|+||||+|+.+++
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHH
Confidence 345678999999999988886554 5788999999999999999988
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.03 Score=61.26 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=56.9
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhcceEEEEeccCCCHHHH-HHHHHHHcCCCCcccchH
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKII-QGDIAEKLGLVSCEKVET 230 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~~~~~~~~i-~~~i~~~l~~~~~~~~~~ 230 (566)
..+++||++++.++++-|....-.=-.++|-+|+|||+++.-++..++=-.|.....-.++ --++..-.....-.-...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFE 248 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFE 248 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHH
Confidence 4578999999999999998322222246899999999998777762211111111000000 000100001100011234
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 231 RRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 231 ~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
+....+.+.+...++..+++|.+-..
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhh
Confidence 45566666665545899999987543
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.92 E-value=0.11 Score=49.37 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc------ceEEEEecc-----CCCHHHHHHHHHHHcCCCCcc------c-chHH-H
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQ-----NPNIKIIQGDIAEKLGLVSCE------K-VETR-R 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~-----~~~~~~i~~~i~~~l~~~~~~------~-~~~~-~ 232 (566)
....+++|||-.|.||||+++.+.. +.++..-.+ .....+-..++++..+..... . +.-+ .
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 3567899999999999999999988 333332111 112334445566666543221 1 1111 1
Q ss_pred HHHHHHHHhcCCeEEEEEeCC
Q 045507 233 ANRLYERLKREKKILIVLDNI 253 (566)
Q Consensus 233 ~~~l~~~l~~~kr~LlVlDdv 253 (566)
.-.+.+.|. -+.=+||.|..
T Consensus 117 Ri~IARALa-l~P~liV~DEp 136 (268)
T COG4608 117 RIGIARALA-LNPKLIVADEP 136 (268)
T ss_pred hHHHHHHHh-hCCcEEEecCc
Confidence 223344444 36788999985
No 244
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.89 E-value=0.18 Score=49.88 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++-|+|..|+||||||..+.. .++|+.....++... +..++.+.+. ....+....+.+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 357999999999999999987766 578888877776644 3445544322 1223344444455
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045507 240 LKREKKILIVLDNIWKH 256 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~~ 256 (566)
++.+.--++|+|-|...
T Consensus 127 irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHTTSESEEEEE-CTT-
T ss_pred hhcccccEEEEecCccc
Confidence 56666668999998655
No 245
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.89 E-value=0.083 Score=48.67 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+++|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 246
>PRK04328 hypothetical protein; Provisional
Probab=94.88 E-value=0.14 Score=49.31 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQN 206 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~ 206 (566)
..+++.|.|.+|.|||+||.++.. ..+|++...+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 468999999999999999987644 5678877664
No 247
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.88 E-value=0.14 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++++|+|.+|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987755
No 248
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.88 E-value=0.022 Score=51.59 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEEecc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQ 205 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~ 205 (566)
.++|.+.|++|+||||+|+.+.. ...|++++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 36899999999999999999988 344665543
No 249
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.38 Score=44.94 Aligned_cols=55 Identities=27% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEec
Q 045507 150 KGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVS 204 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~ 204 (566)
..+.++-|.|-.++++.+... -+..+=|.++|++|.|||-||++|+| ...|+.|.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv 221 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 221 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeec
Confidence 344556666666666655432 24567788999999999999999999 44555553
No 250
>PRK04040 adenylate kinase; Provisional
Probab=94.84 E-value=0.024 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999877
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.83 E-value=0.079 Score=58.98 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=34.6
Q ss_pred CccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSD---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 467888888888887651 1245789999999999999999988
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.12 Score=52.41 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCC--CHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHh
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNP--NIKIIQGDIAEKLGLVSCEKVETRRANRLYERLK 241 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 241 (566)
...++.++|..|+||||++..+.. .+..++ .+.+ ...+-++...+.++.+................+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 357999999999999999988865 123333 2222 3344445555666654332221112223333444
Q ss_pred cCCeEEEEEeCCC
Q 045507 242 REKKILIVLDNIW 254 (566)
Q Consensus 242 ~~kr~LlVlDdv~ 254 (566)
+ +-+|++|..-
T Consensus 215 -~-~DlVLIDTaG 225 (374)
T PRK14722 215 -N-KHMVLIDTIG 225 (374)
T ss_pred -C-CCEEEEcCCC
Confidence 2 3556688873
No 253
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.82 E-value=0.064 Score=56.26 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=43.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKIL 247 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 247 (566)
.-+.|+|..|.|||.|++++.+ ..-.+.+ +...+...+...++.. .......++.++ +.-+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----~~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~dv 209 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM----SGDEFARKAVDILQKT------HKEIEQFKNEIC--QNDV 209 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE----EHHHHHHHHHHHHHHh------hhHHHHHHHHhc--cCCE
Confidence 4588999999999999999988 1222222 2345666666555321 012334555554 2458
Q ss_pred EEEeCCCCc
Q 045507 248 IVLDNIWKH 256 (566)
Q Consensus 248 lVlDdv~~~ 256 (566)
||+||+...
T Consensus 210 LiIDDiq~l 218 (450)
T PRK14087 210 LIIDDVQFL 218 (450)
T ss_pred EEEeccccc
Confidence 889999643
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.81 E-value=0.11 Score=58.30 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred CCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHH
Q 045507 151 GYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~ 215 (566)
....+.|.+..++.|.+.+. -...+-+.++|.+|.|||++|+++++ ..-++.++.+ +
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~--------~ 522 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP--------E 522 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH--------H
Confidence 34556777777776666543 12234588999999999999999998 3334444321 1
Q ss_pred HHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 216 IAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 216 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
++... .. .....+..+.+......+.+|++|+++..
T Consensus 523 l~~~~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 523 ILSKW----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred Hhhcc----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 11110 00 11123344444444446799999998643
No 255
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.80 E-value=0.16 Score=50.81 Aligned_cols=82 Identities=28% Similarity=0.321 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cc-
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KV- 228 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~- 228 (566)
..+++-|+|.+|+|||+++.+++- .++|++....|++..+.+ +++.++..... .+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 468899999999999999988753 578999888888877654 34444432111 01
Q ss_pred --hHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045507 229 --ETRRANRLYERLKR-EKKILIVLDNIWK 255 (566)
Q Consensus 229 --~~~~~~~l~~~l~~-~kr~LlVlDdv~~ 255 (566)
.......+...+.. .+--|||+|-+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 11223444444443 3445899999853
No 256
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.80 E-value=0.11 Score=53.36 Aligned_cols=85 Identities=16% Similarity=0.300 Sum_probs=52.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~~~ 232 (566)
.....++|+|..|+|||||++.+.. .++++-+.+.. .+.++...++..-+... .+.+. ...
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCET 239 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHH
Confidence 3457799999999999999999987 33445555543 34556666544322111 01111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 240 A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 240 ATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHcCCCEEEEEcChHHH
Confidence 334556553 379999999998643
No 257
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.77 E-value=0.11 Score=59.07 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+...+.. ....++.++|..|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4577989988888877751 1235788999999999999999987
No 258
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.74 E-value=0.048 Score=58.54 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+...+......-+.|+|..|+|||++|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346889999999988877665566778999999999999999975
No 259
>PRK08149 ATP synthase SpaL; Validated
Probab=94.71 E-value=0.15 Score=52.64 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=52.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccc------hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKV------ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~------~~~~ 232 (566)
.....++|+|..|+|||||++.++. .+....+... ..+..+..+......... .+.+ ....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~ 228 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALV 228 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHH
Confidence 3557899999999999999999987 2233444433 355566666655432111 1111 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .||++|+++||+-..
T Consensus 229 a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 229 ATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHcCCCEEEEccchHHH
Confidence 334555553 379999999998643
No 260
>PRK00625 shikimate kinase; Provisional
Probab=94.71 E-value=0.023 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 261
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.71 E-value=0.083 Score=49.92 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|+|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999988
No 262
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.70 E-value=0.02 Score=52.96 Aligned_cols=21 Identities=48% Similarity=0.762 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 263
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.69 E-value=0.02 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 264
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.69 E-value=0.15 Score=53.80 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCCccchHHHHHHHHHHHh-------c---CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHH
Q 045507 152 YESFESRLSTLKAIQNALS-------D---LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEK 219 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~-------~---~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~ 219 (566)
...+.|.+..++.+.+... . ...+-|.++|.+|.|||.+|+.+.+ ..-++.++-. . +...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~----~----l~~~ 298 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG----K----LFGG 298 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH----H----hccc
Confidence 3456676666555544211 1 2345689999999999999999999 3223333211 1 1110
Q ss_pred cCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 220 LGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 220 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
. ...+ ......+.+......+++|++|+++.
T Consensus 299 ~----vGes-e~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 299 I----VGES-ESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred c----cChH-HHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 0 0001 11233333333334689999999974
No 265
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.68 E-value=3 Score=43.19 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.++|.+|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988865
No 266
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.67 E-value=0.16 Score=50.67 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=50.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
...++.|+|.+|+|||||+..++- .++|+.....+....+ ..+++.++..... .+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 468999999999999999988752 3588888887777764 3345554433211 111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCCC
Q 045507 230 TR---RANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 230 ~~---~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
.+ ....+...+...+--|||+|-+.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 12 22333333433455689999884
No 267
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.66 E-value=0.021 Score=51.96 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 268
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.0078 Score=57.28 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=41.8
Q ss_pred ccccccEEEeecCCCCCC-C-CCCCCCccceEEecccccccccC-CChHHHhcCccCcEEEecCCccc
Q 045507 428 ALKQCHAISLLNSSIPEL-P-EGLECPHLDFLLMVCKDTLIETN-IPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~-~-~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
..++++.+++.++.+.+. . ...+-++|+.|.+++++. ... -..-++.+++.|..|++++|...
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 345778888888877542 1 112456899999987654 221 12335678899999999999643
No 269
>PRK10536 hypothetical protein; Provisional
Probab=94.64 E-value=0.12 Score=49.22 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...+.+|......++.++.+. .++.+.|..|.|||+||.++..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHH
Confidence 4456778888888888888763 4999999999999999987653
No 270
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.0069 Score=57.61 Aligned_cols=126 Identities=24% Similarity=0.185 Sum_probs=73.7
Q ss_pred cccccEEEeecCCC-CCCC--C-CCCCCccceEEecccccccccCC-ChHHHhcCccCcEEEecCCc--c--ccCChhhh
Q 045507 429 LKQCHAISLLNSSI-PELP--E-GLECPHLDFLLMVCKDTLIETNI-PEKFFSRIKKLKDVDMARMW--L--FSLPSSID 499 (566)
Q Consensus 429 ~~~~r~l~l~~~~~-~~~~--~-~~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~--~--~~lp~~i~ 499 (566)
-.+++++.++.++- .... - ...|+.|..|.++.+.. .... ---+-.--..|..|+++|+. + ..+..-..
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~ 310 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR 310 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH
Confidence 45788888887643 2111 0 12577888888865542 1111 11011123456667777762 1 11222234
Q ss_pred cccccceeeccCcc-cCC--ccccccCccCcEEeccCC-CCCccch---hhcCCCCCCEEeccCCC
Q 045507 500 LLVNLQILCLHQYM-LGD--IAIIGKLKNLEILSIWGP-DIKTLPE---ELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 500 ~L~~L~~L~L~~~~-l~~--p~~i~~L~~L~~L~l~~~-~l~~lP~---~i~~L~~L~~L~l~~c~ 558 (566)
..++|..|||+.|. ++. ...+.++..|++|.++.| .+ .|+ .++..++|.+|++.||-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 56788888888876 555 566777888888888887 32 222 35677788888887764
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.61 E-value=0.14 Score=46.71 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=26.7
Q ss_pred EEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHH
Q 045507 177 IGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~ 215 (566)
+.|.|.+|+|||++|.++.. .+.|++...+ ..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHH
Confidence 67899999999999988755 5677766543 4444433
No 272
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.60 E-value=0.14 Score=52.94 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc------ceEEEEeccCCCHHHHHHHHHHHcCC-------CCcccc-----hHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQNPNIKIIQGDIAEKLGL-------VSCEKV-----ETRRAN 234 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~~~~~~~i~~~i~~~l~~-------~~~~~~-----~~~~~~ 234 (566)
....++|+|..|+|||||++.+.. .+++..-....++..+....+..... ..++.. ......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999887 22222211334555554444333211 111100 111233
Q ss_pred HHHHHHh-cCCeEEEEEeCCCCc
Q 045507 235 RLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 235 ~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
.+-++++ .|+.+|+++||+-..
T Consensus 244 ~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHcCCCEEEeccchHHH
Confidence 4555553 378999999998543
No 273
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.58 E-value=0.03 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|.++|++|+||||+|+.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998
No 274
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.57 E-value=0.095 Score=54.11 Aligned_cols=43 Identities=28% Similarity=0.216 Sum_probs=33.0
Q ss_pred CccchHHHHHHHHHHHh-------cC---------CceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS-------DL---------NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~-------~~---------~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++.+...+. .. ..+.+.++|.+|+|||++|+.+..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47899988887754431 10 235689999999999999999987
No 275
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.57 E-value=0.14 Score=48.09 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 176 IIGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
.|.|.|.+|+||||+|+.+....-|.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 47899999999999999998733344443
No 276
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.18 Score=52.09 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHcCCCCc-------ccc------hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKLGLVSC-------EKV------ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l~~~~~-------~~~------~~~~ 232 (566)
.....++|+|..|+|||||++.+.. .++++-+.... .+.++..+.+..-+.... +.+ ....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~ 235 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYL 235 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHH
Confidence 3567889999999999999999987 23445555543 344555544443221110 111 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 236 a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 236 TLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 334556663 379999999998543
No 277
>PRK14532 adenylate kinase; Provisional
Probab=94.54 E-value=0.13 Score=47.18 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.3
Q ss_pred EEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 177 IGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
|.|.|++|+||||+|+.+....-|.+++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 6789999999999999999843344444
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.53 E-value=0.032 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.+.|+.|+||||+|+.++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.21 Score=50.35 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=44.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccC-CCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhc-C
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQN-PNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKR-E 243 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~ 243 (566)
..+++.++|..|+||||++..+.. .+.+++.... .....-++..++.++.+..............+.+.. +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 468999999999999999987765 3455554322 122334455555555433222222222333333431 1
Q ss_pred CeEEEEEeCC
Q 045507 244 KKILIVLDNI 253 (566)
Q Consensus 244 kr~LlVlDdv 253 (566)
..=+|++|-.
T Consensus 285 ~~D~VLIDTA 294 (407)
T PRK12726 285 CVDHILIDTV 294 (407)
T ss_pred CCCEEEEECC
Confidence 2356667765
No 280
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.51 E-value=0.12 Score=58.84 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred CCccchHHHHHHHHHHHhc------C---CceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD------L---NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~------~---~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+...+.. + ...++.++|..|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999998888762 1 245788999999999999999987
No 281
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.50 E-value=0.23 Score=45.45 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 164 AIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 164 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.+.+..+.+ ..+.++|..|+||||+|+.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555655 6789999999999999998877
No 282
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.50 E-value=0.036 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|+|.+|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 283
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.48 E-value=0.21 Score=49.60 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEec-cCCCHHHHHHHHHHHcCCCC-------cccc------hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVS-QNPNIKIIQGDIAEKLGLVS-------CEKV------ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~-~~~~~~~i~~~i~~~l~~~~-------~~~~------~~~~ 232 (566)
.....++|+|..|.|||||.+.+.. .....-+. ....+..+.......-+... .+.+ ....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~ 146 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYT 146 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 3457889999999999999999987 22233333 23455555555554322111 1111 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 233 ANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
...+-+++. .||.+|+++||+-.
T Consensus 147 a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 147 ATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHcCCCeEEEeccchH
Confidence 334455553 37899999999854
No 284
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.47 E-value=0.15 Score=45.76 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEecc-CCCHHHHHHHHHH
Q 045507 156 ESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQ-NPNIKIIQGDIAE 218 (566)
Q Consensus 156 ~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~-~~~~~~i~~~i~~ 218 (566)
+|.+..+.++.+.+. .....-|.|+|-.|.||+.+|+.+++ ..-|+.|.- ..+...+...++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHE
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhc
Confidence 566666777766655 22235566999999999999999999 235666643 3444555555554
No 285
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.45 E-value=0.031 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++.|+|+.|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 286
>PLN02200 adenylate kinase family protein
Probab=94.43 E-value=0.11 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999987
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.41 E-value=0.17 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.++|.+|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 288
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.41 E-value=0.14 Score=58.03 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHHHh---------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS---------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~---------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+.+.+. +....++.++|..|+|||.+|+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999888874 12345789999999999999988776
No 289
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.41 E-value=0.097 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..-+.|+|..|+|||+|++.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999998
No 290
>PRK14527 adenylate kinase; Provisional
Probab=94.41 E-value=0.082 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|+|.+|+||||+|+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 291
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.0081 Score=54.04 Aligned_cols=32 Identities=38% Similarity=0.403 Sum_probs=17.4
Q ss_pred cccceeeccCcc-cCC--ccccccCccCcEEeccC
Q 045507 502 VNLQILCLHQYM-LGD--IAIIGKLKNLEILSIWG 533 (566)
Q Consensus 502 ~~L~~L~L~~~~-l~~--p~~i~~L~~L~~L~l~~ 533 (566)
++|+.|+|++|. |++ ...+.++++|+.|.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 455555555554 554 45555555555555544
No 292
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.086 Score=52.30 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccC
Q 045507 153 ESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQN 206 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~ 206 (566)
.++.|-.+.++-|.+... ...-+-|.++|++|.|||-||++||. ..-|.+||..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 445565655555555432 12446789999999999999999999 5566677654
No 293
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.37 E-value=0.12 Score=48.14 Aligned_cols=82 Identities=21% Similarity=0.403 Sum_probs=50.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCC-------Ccccch------HHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLV-------SCEKVE------TRRA 233 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~-------~~~~~~------~~~~ 233 (566)
...-++|+|..|+|||+|+..+.+ ..+++.+.+. ..+.++.+++...-..+ ...... ....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 347789999999999999999987 4577777665 35556666664321111 001110 0112
Q ss_pred HHHHHHHh-cCCeEEEEEeCCC
Q 045507 234 NRLYERLK-REKKILIVLDNIW 254 (566)
Q Consensus 234 ~~l~~~l~-~~kr~LlVlDdv~ 254 (566)
-.+-++++ .||+.|+++||+.
T Consensus 94 ~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhhHHHhhcCCceeehhhhhH
Confidence 23344443 3799999999983
No 294
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.36 E-value=0.15 Score=56.34 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=53.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++-|+|..|+||||||.+++- .++|+.....++.. .+++++.+.+. .+..+....+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 468899999999999999977544 67898888777743 56666654332 1223344444555
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
+..++--|||+|-+..
T Consensus 134 v~~~~~~LVVIDSI~a 149 (790)
T PRK09519 134 IRSGALDIVVIDSVAA 149 (790)
T ss_pred hhcCCCeEEEEcchhh
Confidence 5555677899999763
No 295
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.35 E-value=0.084 Score=44.99 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 160 STLKAIQNALSD--LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.+++-+.+.. ....++.+.|.-|.||||+++.+..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344444444442 2456899999999999999999998
No 296
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.051 Score=58.92 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=39.2
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999988876664 488999999999999999988
No 297
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.34 E-value=0.041 Score=48.29 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..||-|.|.+|+||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35888999999999999998886
No 298
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.34 E-value=0.052 Score=56.43 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred CccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++||++.++.+...+..+ .-|.|.|.+|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHH
Confidence 5789999999998877643 4678999999999999999998
No 299
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.34 E-value=0.11 Score=54.23 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=40.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKIL 247 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 247 (566)
.-+.|+|..|+|||+|++++.+ .+++++ ...+...+...+... ..+..++.+. +.-+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~--~~dv 205 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR--NVDA 205 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc--cCCE
Confidence 5688999999999999999998 233432 233444444444321 1223444443 3457
Q ss_pred EEEeCCCCc
Q 045507 248 IVLDNIWKH 256 (566)
Q Consensus 248 lVlDdv~~~ 256 (566)
|++||+...
T Consensus 206 LiIDDiq~l 214 (445)
T PRK12422 206 LFIEDIEVF 214 (445)
T ss_pred EEEcchhhh
Confidence 888998543
No 300
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.33 E-value=0.029 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.756 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 301
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.30 E-value=0.041 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++|.|+|..|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 302
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.092 Score=53.09 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=40.1
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++|.+.....+...+..+.+. .+.|+|..|+||||+|+.+.+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH
Confidence 34567899999999999988876654 589999999999999999888
No 303
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.29 E-value=0.28 Score=50.95 Aligned_cols=79 Identities=25% Similarity=0.270 Sum_probs=45.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCH--HHHHHHHHHHcCCCCccc----chHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNI--KIIQGDIAEKLGLVSCEK----VETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~--~~i~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 239 (566)
...+|.++|.+|+||||.|..++. .+..++. +.+.. .+.+..++..++.+.... +.........+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC-CCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 467999999999999999988876 2333333 22332 444556666665432211 112222333334
Q ss_pred HhcCCeEEEEEeCCC
Q 045507 240 LKREKKILIVLDNIW 254 (566)
Q Consensus 240 l~~~kr~LlVlDdv~ 254 (566)
+.. . =+||+|..-
T Consensus 173 ~~~-~-DvVIIDTAG 185 (437)
T PRK00771 173 FKK-A-DVIIVDTAG 185 (437)
T ss_pred hhc-C-CEEEEECCC
Confidence 432 3 568888763
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=94.28 E-value=0.42 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997776665
No 305
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.28 E-value=0.22 Score=48.13 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQN 206 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~ 206 (566)
..+++.|.|.+|+||||+|.++.. .+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 458899999999999999998644 5788887643
No 306
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.18 Score=54.45 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+.+++..+.. ..+.++|..|.||||+|+.+..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999886654 4577899999999999999977
No 307
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.24 E-value=0.073 Score=50.42 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 160 STLKAIQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 160 ~~~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+..+.++.. ....+.+.|+|..|+|||+||+.+++
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33444444433 23456789999999999999999988
No 308
>PRK06217 hypothetical protein; Validated
Probab=94.24 E-value=0.033 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|.+|+||||+|+.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 309
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.03 Score=29.01 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=4.7
Q ss_pred CcEEeccCCCCCcc
Q 045507 526 LEILSIWGPDIKTL 539 (566)
Q Consensus 526 L~~L~l~~~~l~~l 539 (566)
|+.|+|++|.+.++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 310
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.23 E-value=0.23 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..-+.++|..|+|||.||..+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~ 205 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAK 205 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 37799999999999999999988
No 311
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.045 Score=47.75 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhcceEEEEeccCCCHHHHHHHHHHHcCC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKIIQGDIAEKLGL 222 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~~~~~~~~i~~~i~~~l~~ 222 (566)
.+++.|+|.+|+||||+.+.+-...+.. .--|--.+.-+++...+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~---~ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKH---KIVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhc---eeeeHhHHHHHHHHHhCC
Confidence 5899999999999999998776622100 001334455556555543
No 312
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.067 Score=47.78 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-ceEEEEeccC
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-KVDFSEVSQN 206 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-~~~wv~v~~~ 206 (566)
..++.|.|++|+|||||++.++. .-++.+||.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~T 37 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSAT 37 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEec
Confidence 46789999999999999999999 4555666543
No 313
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.16 E-value=0.078 Score=53.15 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..+..++-.+.++...-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789999988887777777677788999999999999999987
No 314
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.14 E-value=0.067 Score=52.08 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 163 KAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 163 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++.+... .+-+.++|..|+|||++++....
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhc
Confidence 4455555554 45668999999999999998776
No 315
>PRK14530 adenylate kinase; Provisional
Probab=94.14 E-value=0.047 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999988
No 316
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.15 Score=54.53 Aligned_cols=65 Identities=31% Similarity=0.288 Sum_probs=40.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC--CCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCC
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN--PNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREK 244 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 244 (566)
.-|.|.|..|+|||+||+.+++ .+.+++.+.- ..+..+++.+- .-..+.+.. .
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~~-~ 494 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALWY-A 494 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHhh-C
Confidence 5688999999999999999999 2233333322 22333333322 122333443 5
Q ss_pred eEEEEEeCCCCc
Q 045507 245 KILIVLDNIWKH 256 (566)
Q Consensus 245 r~LlVlDdv~~~ 256 (566)
+-+|||||++..
T Consensus 495 PSiIvLDdld~l 506 (952)
T KOG0735|consen 495 PSIIVLDDLDCL 506 (952)
T ss_pred CcEEEEcchhhh
Confidence 789999998643
No 317
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.13 E-value=0.04 Score=50.06 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++++|+|..|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999988
No 318
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.07 Score=54.67 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=38.9
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+.+.+..+.. ..+.++|..|+||||+|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999887655 4788999999999999999877
No 319
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.12 E-value=0.044 Score=46.01 Aligned_cols=20 Identities=50% Similarity=0.752 Sum_probs=16.0
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|+|.+|+||||+|+.+..
T Consensus 2 vLleg~PG~GKT~la~~lA~ 21 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR 21 (131)
T ss_dssp EEEES---HHHHHHHHHHHH
T ss_pred EeeECCCccHHHHHHHHHHH
Confidence 67999999999999999998
No 320
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.09 E-value=0.24 Score=47.99 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=51.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCC---CCccc--chHHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGL---VSCEK--VETRRANRLYERL 240 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~---~~~~~--~~~~~~~~l~~~l 240 (566)
..+++=|+|..|.||||+|-+++- .++|+.....+++..+..--...+.. ..+.. .....++.+.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence 458899999999999999988765 68999999999988765433221211 11111 1112233333332
Q ss_pred hcCCeEEEEEeCCCC
Q 045507 241 KREKKILIVLDNIWK 255 (566)
Q Consensus 241 ~~~kr~LlVlDdv~~ 255 (566)
.+ +--|+|+|-|-.
T Consensus 139 ~~-~i~LvVVDSvaa 152 (279)
T COG0468 139 AE-KIDLLVVDSVAA 152 (279)
T ss_pred cC-CCCEEEEecCcc
Confidence 22 356899998853
No 321
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.09 E-value=0.036 Score=48.70 Aligned_cols=21 Identities=48% Similarity=0.658 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.+.|.+|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999999988
No 322
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.06 E-value=0.17 Score=57.44 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCccchHHHHHHHHHHHhc-------C--CceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD-------L--NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999998887751 1 234677999999999999999887
No 323
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.05 E-value=0.065 Score=53.78 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.++.+..|+..+.++.+.-|.|.|..|.||||+|+.+++
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456789999888888887787777788999999999999999988
No 324
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.05 E-value=0.076 Score=54.11 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+.+++..+.. ..+.++|..|+||||+|+.+..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999998886654 4678999999999999998876
No 325
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.23 Score=54.30 Aligned_cols=91 Identities=22% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCccchHHHHHH---HHHHHhcC---------CceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHH
Q 045507 153 ESFESRLSTLKA---IQNALSDL---------NVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 153 ~~~~gr~~~~~~---l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
.++.|.++++++ +++.|.++ -.+=+.++|++|.|||-||++++- .+-|++++..- ..+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSE--------FvE 382 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSE--------FVE 382 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHH--------HHH
Confidence 456677766554 55555532 234488999999999999999999 66677666431 111
Q ss_pred HcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 219 KLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 219 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
.+... ....+..+....+...++.|.+|+++..
T Consensus 383 ~~~g~-----~asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 383 MFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred Hhccc-----chHHHHHHHHHhhccCCeEEEecccccc
Confidence 11110 0223444544444456778888877543
No 326
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.00 E-value=0.14 Score=49.72 Aligned_cols=52 Identities=23% Similarity=0.157 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHH
Q 045507 160 STLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 160 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~ 213 (566)
+.++++..++..+ +-+.+.|.+|+|||++|+.+.+ ....++.+......+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHh
Confidence 3445555555432 4566899999999999999987 34455555544444443
No 327
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.99 E-value=0.05 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 457999999999999999998876
No 328
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.99 E-value=0.21 Score=46.26 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhcc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVARK 197 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 197 (566)
+....|+|+|.+|+|||||...+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 45678999999999999999988873
No 329
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.99 E-value=0.2 Score=51.55 Aligned_cols=84 Identities=21% Similarity=0.380 Sum_probs=49.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-----ceEEEEecc-CCCHHHHHHHHHHHcCCCCc-------ccc------hHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQ-NPNIKIIQGDIAEKLGLVSC-------EKV------ETRRA 233 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~-~~~~~~i~~~i~~~l~~~~~-------~~~------~~~~~ 233 (566)
....++|+|..|+|||||++.+.. ....+.+.. ...+.++....+..-+.... +.+ .....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a 218 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTA 218 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999998887 112222333 33455555554433221111 111 11123
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 234 NRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 234 ~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
..+-++++ .|+++|+++||+-..
T Consensus 219 ~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 219 TAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 34556664 378999999998543
No 330
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.02 Score=54.60 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=66.8
Q ss_pred EEEeecCCCCCCCCC----CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhh-hcccccceee
Q 045507 434 AISLLNSSIPELPEG----LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQILC 508 (566)
Q Consensus 434 ~l~l~~~~~~~~~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~L~~L~~L~ 508 (566)
-+.+.++.+...-.. ..++.++.|++.+|.-. ..+-...+..+|+.|++|+++.|++.+-..++ -.+.+|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 445556655443222 24677888888776421 11122345678999999999999765422222 2467999999
Q ss_pred ccCcccCC---ccccccCccCcEEeccCCCCC
Q 045507 509 LHQYMLGD---IAIIGKLKNLEILSIWGPDIK 537 (566)
Q Consensus 509 L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~ 537 (566)
|.++.+.- -+.+..++.++.|.++.|++.
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 99998654 456677888888877766443
No 331
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.96 E-value=0.23 Score=51.42 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=50.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCC--------cccc-----hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVS--------CEKV-----ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~--------~~~~-----~~~~ 232 (566)
.....++|+|..|+|||||++.+.. .++...+... .....+...+...-+... ++.. ....
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~ 245 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMY 245 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHH
Confidence 3456799999999999999999976 2223334333 345555555544322211 1110 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 246 a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 246 CTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHCCCCEEEEecchhHH
Confidence 334556654 379999999998643
No 332
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.94 E-value=0.049 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+||||||+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 333
>PRK13947 shikimate kinase; Provisional
Probab=93.92 E-value=0.042 Score=49.43 Aligned_cols=21 Identities=48% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999999
No 334
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.92 E-value=0.039 Score=48.09 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=23.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc--ceEEEEec
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR--KVDFSEVS 204 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~ 204 (566)
+|.|+|..|+||||+|+.+.. ...+++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 589999999999999999988 33344433
No 335
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.91 E-value=0.0035 Score=57.40 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-ccccccCccCcE
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEI 528 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 528 (566)
.+...+.|+++.+.. ..+-.. |+.+..|..|+++.+.+..+|..++.+..++.+++..|..+. |.+.+.++++++
T Consensus 40 ~~kr~tvld~~s~r~---vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL---VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHH---Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 345566666665542 222222 345666777888888888888888888888888888888777 888888888888
Q ss_pred EeccCCCC
Q 045507 529 LSIWGPDI 536 (566)
Q Consensus 529 L~l~~~~l 536 (566)
+++.+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 88887753
No 336
>PRK13975 thymidylate kinase; Provisional
Probab=93.91 E-value=0.1 Score=48.18 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 337
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.90 E-value=0.24 Score=51.15 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=51.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~~~ 232 (566)
.....++|.|..|+|||||.+.+++ .++++-+.... .+.++....+..-+... .+.+. ...
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFV 239 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHH
Confidence 3567899999999999999999998 34555565543 34454444333221111 01111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .||++|+++||+-..
T Consensus 240 a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 240 ATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 334556653 379999999998643
No 338
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=0.069 Score=57.78 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=40.5
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++|.+..++.|.+.+..+.+. -+.++|..|+||||+|+.+.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999998876654 689999999999999999988
No 339
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.86 E-value=0.48 Score=42.16 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|.++..+.|.+.+..+.+. .+.++|..|+||+|+|..+.+
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~ 41 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFAR 41 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 4566778888888777665 579999999999999998887
No 340
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.86 E-value=0.4 Score=44.64 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCCccchHHHHHHHHH----HHhcCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCCHHHHHHHHHHHcCC
Q 045507 152 YESFESRLSTLKAIQN----ALSDLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPNIKIIQGDIAEKLGL 222 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~----~L~~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~~~~i~~~i~~~l~~ 222 (566)
...++|-|...+.+++ .+..-...-|.+||.-|.||++|++++.+ .---|.|...
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~---------------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE---------------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH----------------
Confidence 3446676665555554 33344556789999999999999999988 2223333321
Q ss_pred CCcccchHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045507 223 VSCEKVETRRANRLYERLKR-EKKILIVLDNIWK 255 (566)
Q Consensus 223 ~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~ 255 (566)
+....-.+.+.|+. ..||.|..||+.=
T Consensus 123 ------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF 150 (287)
T COG2607 123 ------DLATLPDLVELLRARPEKFILFCDDLSF 150 (287)
T ss_pred ------HHhhHHHHHHHHhcCCceEEEEecCCCC
Confidence 11122334444432 4689999999963
No 341
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.85 E-value=0.19 Score=44.63 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=42.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc----------------------------ceEEEEeccCCCHHHHHHHHHHHcCCCC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR----------------------------KVDFSEVSQNPNIKIIQGDIAEKLGLVS 224 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~----------------------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~ 224 (566)
.-..++|.|-.|.||+|||+++.- ..+|-.-+..+++..-..+|++.--.-.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 457899999999999999999876 1233333444566655555553321112
Q ss_pred cccchHHHHHHHHHHHh
Q 045507 225 CEKVETRRANRLYERLK 241 (566)
Q Consensus 225 ~~~~~~~~~~~l~~~l~ 241 (566)
.+.+..+...++.+.|+
T Consensus 118 T~~~~~~R~~~i~~TL~ 134 (267)
T COG4167 118 TDLEPEQRRKQIFETLR 134 (267)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 23344555666777665
No 342
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.075 Score=57.23 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCceE-EEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSI-IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|.+++..+.+.. +.++|..|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999998777654 68999999999999999987
No 343
>PRK13948 shikimate kinase; Provisional
Probab=93.84 E-value=0.11 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999998
No 344
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.23 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999987764
No 345
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.05 Score=50.67 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|.|||||++.+.-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 3457899999999999999999876
No 346
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.82 E-value=0.24 Score=51.34 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=50.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEecc-CCCHHHHHHHHHHHcCCCCc-------ccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQ-NPNIKIIQGDIAEKLGLVSC-------EKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~-~~~~~~i~~~i~~~l~~~~~-------~~~~------~~~ 232 (566)
.....++|.|..|.|||||++.+.. ....+-+.+ ...+..+.+.+...-+.... +.+. ...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~ 240 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 3567899999999999999999986 112223333 33455555555433221110 1110 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 241 a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 334555654 378999999998543
No 347
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.81 E-value=0.22 Score=51.42 Aligned_cols=84 Identities=12% Similarity=0.206 Sum_probs=49.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~~------~~~ 232 (566)
.....++|+|..|+|||||++.+.+ ...+..+... ..+.++..+....-.... ..... ...
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~ 232 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV 232 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 4567899999999999999999987 3334444443 334455554432110000 00111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 233 ANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
...+-++++ +|+++|+++||+-.
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCHHH
Confidence 334555654 37899999999864
No 348
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.80 E-value=0.058 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++.|+|.+|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 349
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.79 E-value=0.051 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999987
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.78 E-value=0.4 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++.++|.+|+||||.+..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998887765
No 351
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.049 Score=47.96 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|+|.|.+|+||||+++.+-.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999998874
No 352
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.45 Score=48.62 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=43.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-----------ceEEEEeccCCCHHH--HHHHHHHHcCCCCcccchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-----------KVDFSEVSQNPNIKI--IQGDIAEKLGLVSCEKVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-----------~~~wv~v~~~~~~~~--i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 239 (566)
..+++.++|..|+||||.+..++. .+..++. +++.... -++..++.++.+................
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999887765 2333333 3333322 2445555565543322222222222223
Q ss_pred HhcCCeEEEEEeCCC
Q 045507 240 LKREKKILIVLDNIW 254 (566)
Q Consensus 240 l~~~kr~LlVlDdv~ 254 (566)
+. +.-+|++|..-
T Consensus 252 ~~--~~DlVLIDTaG 264 (388)
T PRK12723 252 SK--DFDLVLVDTIG 264 (388)
T ss_pred hC--CCCEEEEcCCC
Confidence 32 34577788763
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.74 E-value=0.1 Score=50.64 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 167 NALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 167 ~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+++...+..++.|+|.+|+|||||...+.+
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334467899999999999999999988776
No 354
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.1 Score=53.12 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=39.8
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+...+.+.+.+..+.+. .+.++|..|+||+|+|..+..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4457889999999999998877765 589999999999999998887
No 355
>PRK05922 type III secretion system ATPase; Validated
Probab=93.71 E-value=0.35 Score=49.94 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=49.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCCcc-------cc------hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVSCE-------KV------ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~~-------~~------~~~~ 232 (566)
.....++|+|..|+|||||.+.+.. ...++.++.. ......+.+........... .+ ....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 3456789999999999999999987 2222233332 23344444444333222111 00 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 235 a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 344566664 379999999998643
No 356
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.69 E-value=0.21 Score=45.88 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 357
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.69 E-value=0.15 Score=45.82 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=30.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHHcC
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEKLG 221 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~l~ 221 (566)
.++.|.|.+|+||||+|..+.. ...++.....+ ..++.+.|..+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~-~~e~~~ri~~h~~ 51 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF-DDEMAARIAHHRQ 51 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC-hHHHHHHHHHHHh
Confidence 3689999999999999999876 23444333333 3455566655443
No 358
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.69 E-value=0.3 Score=50.38 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=49.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~~------~~~ 232 (566)
.....++|+|..|.|||||++.+.. .....-+.+.. ...++....+.+-+... .+.+. ...
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~ 214 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFT 214 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHH
Confidence 4567899999999999999998887 11222233332 34445444433221110 01111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 215 ATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 344555553 478999999998543
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.69 E-value=0.22 Score=52.28 Aligned_cols=81 Identities=31% Similarity=0.368 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc--chHHHHHHHHHHHhcC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK--VETRRANRLYERLKRE 243 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 243 (566)
...++.|.|.+|+|||||+.++.. .++|++.... ..++... ++.++...+.. ......+.+.+.+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 357999999999999999998876 4577665443 3343322 45555422211 1111233444555444
Q ss_pred CeEEEEEeCCCCc
Q 045507 244 KKILIVLDNIWKH 256 (566)
Q Consensus 244 kr~LlVlDdv~~~ 256 (566)
+.-+||+|.+...
T Consensus 156 ~~~lVVIDSIq~l 168 (446)
T PRK11823 156 KPDLVVIDSIQTM 168 (446)
T ss_pred CCCEEEEechhhh
Confidence 5668999998543
No 360
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.69 E-value=0.15 Score=48.31 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=46.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHHHHcCCCCc-------------------
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC------------------- 225 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~------------------- 225 (566)
..+++.|.|.+|+|||++|.++.. .++|+++..+ ...+.+.+- .++.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 458999999999999999987653 5677766554 355444432 3322100
Q ss_pred --ccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 226 --EKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 226 --~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
..+..+....+.+.+...+.-.+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 11223344555555543344688899863
No 361
>PRK14531 adenylate kinase; Provisional
Probab=93.68 E-value=0.2 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.|+|.+|+||||+++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999988
No 362
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.67 E-value=0.085 Score=52.75 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+.-.+.+.+..-+.+.|..|.||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 446789999888877655545556789999999999999999977
No 363
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.67 E-value=0.3 Score=40.97 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=31.5
Q ss_pred CccchHHHHHHHHHHHh-------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS-------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|..-+.+.+++.+. ....-|++.+|..|+|||.+++.+++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 45666656666655554 24567899999999999998887776
No 364
>PRK05642 DNA replication initiation factor; Validated
Probab=93.64 E-value=0.42 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+.|+|..|+|||.|++.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999876
No 365
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.63 E-value=0.33 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++.|+|.+|+||||++.++..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~ 54 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAA 54 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 45889999999999999987655
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.62 E-value=0.29 Score=52.09 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=51.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------------~~~ 229 (566)
..+++.|.|.+|+|||||+.++.. .+++++... +..++.... +.++.+... ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 458999999999999999988876 456655544 445555553 444432211 122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 230 TRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 230 ~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
.+....+.+.+...+.-.+|+|.+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 4556677777755455678899874
No 367
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.61 E-value=0.31 Score=50.66 Aligned_cols=84 Identities=17% Similarity=0.297 Sum_probs=47.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc------ceEEEEecc-CCCHHHHHHHHHHHcCCC-------Ccccc------hHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQ-NPNIKIIQGDIAEKLGLV-------SCEKV------ETR 231 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~-~~~~~~i~~~i~~~l~~~-------~~~~~------~~~ 231 (566)
.....++|+|..|+|||||++.+.. ..++. +.+ .-.+.++....+..-+.. ..+.+ ...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~-~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~ 234 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIAL-IGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAY 234 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE-EecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHH
Confidence 4568899999999999999998887 22222 222 223444433322111000 01111 111
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 232 RANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 232 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
....+-++++ .|+++|+++||+-..
T Consensus 235 ~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 235 TATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 2334555553 379999999998543
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.61 E-value=0.046 Score=44.90 Aligned_cols=20 Identities=60% Similarity=0.928 Sum_probs=16.9
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999997654
No 369
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.34 Score=51.86 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=45.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEE
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVL 250 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVl 250 (566)
..+.+.++|++|.|||.||+++++ ..-++.+... ++.. . .++ .....+..+...-+....+.|.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~s---k---~vG------esek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLS---K---WVG------ESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhc---c---ccc------hHHHHHHHHHHHHHcCCCcEEEE
Confidence 456899999999999999999999 6666666554 2111 0 011 11223333444433357899999
Q ss_pred eCCCCc
Q 045507 251 DNIWKH 256 (566)
Q Consensus 251 Ddv~~~ 256 (566)
|.++..
T Consensus 342 DEiDs~ 347 (494)
T COG0464 342 DEIDSL 347 (494)
T ss_pred Echhhh
Confidence 998754
No 370
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.60 E-value=0.06 Score=48.00 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 177 IGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
+.|+|..|+||||+|+.+.. ...|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 46899999999999999988 444443
No 371
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.57 E-value=0.054 Score=47.65 Aligned_cols=20 Identities=45% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 372
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.56 E-value=0.079 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 373
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.43 Score=51.21 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=57.6
Q ss_pred CCccchHHHHHHHHHHHh----------cCCc---eEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----------DLNV---SIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----------~~~~---~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~ 217 (566)
.++-|..+.++-+.+.+. +..+ .=|.++|.+|.|||-||-++.. ..-+++|..+- ++.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE----lL~--- 739 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE----LLS--- 739 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH----HHH---
Confidence 345565555555555543 2222 3378999999999999999988 56677776651 111
Q ss_pred HHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 218 EKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
+.+|. ..+....+..+.+..|+|.+.||..++
T Consensus 740 KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 740 KYIGA------SEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred HHhcc------cHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22232 123455566666667999999998754
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.55 E-value=0.23 Score=52.15 Aligned_cols=80 Identities=28% Similarity=0.323 Sum_probs=47.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc--chHHHHHHHHHHHhcC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK--VETRRANRLYERLKRE 243 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 243 (566)
...++.|.|.+|+|||||+.++.. .++|++.... ..++... +..++...+.. ......+.+.+.+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 457999999999999999998855 4577765443 3333322 23444322111 0011234455555444
Q ss_pred CeEEEEEeCCCC
Q 045507 244 KKILIVLDNIWK 255 (566)
Q Consensus 244 kr~LlVlDdv~~ 255 (566)
+.-++|+|.+..
T Consensus 170 ~~~~vVIDSIq~ 181 (454)
T TIGR00416 170 NPQACVIDSIQT 181 (454)
T ss_pred CCcEEEEecchh
Confidence 566899999864
No 375
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.55 E-value=0.075 Score=49.55 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.0
Q ss_pred hcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 170 SDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 170 ~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++++|+++|..|+|||||...+.+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999988876
No 376
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.54 E-value=1.7 Score=41.07 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=55.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEec-cCCCHHHHHHHHHHHcCCCCccc--ch-HHHHHHHHHHHh
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVS-QNPNIKIIQGDIAEKLGLVSCEK--VE-TRRANRLYERLK 241 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~-~~~~~~~i~~~i~~~l~~~~~~~--~~-~~~~~~l~~~l~ 241 (566)
.++.+++.++|--|.|||.+.|.... .++-+.+. .......+...|+..+....... .. ....+.+....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 45667999999999999999995444 33334444 34677788888888887622111 11 122334444445
Q ss_pred cCCe-EEEEEeCCCCc
Q 045507 242 REKK-ILIVLDNIWKH 256 (566)
Q Consensus 242 ~~kr-~LlVlDdv~~~ 256 (566)
.++| ..++.||..+.
T Consensus 128 ~g~r~v~l~vdEah~L 143 (269)
T COG3267 128 KGKRPVVLMVDEAHDL 143 (269)
T ss_pred hCCCCeEEeehhHhhh
Confidence 5777 89999997644
No 377
>PRK14529 adenylate kinase; Provisional
Probab=93.53 E-value=0.18 Score=47.38 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|.|++|+||||+|+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999998887
No 378
>PRK06820 type III secretion system ATPase; Validated
Probab=93.53 E-value=0.28 Score=50.77 Aligned_cols=85 Identities=16% Similarity=0.311 Sum_probs=47.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHcCCC-------Ccccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKLGLV-------SCEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l~~~-------~~~~~~------~~~ 232 (566)
.....++|+|..|+|||||++.+.. .....-+.... .+..+.......-... ..+.+. ...
T Consensus 161 ~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~ 240 (440)
T PRK06820 161 GEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLST 240 (440)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHH
Confidence 3456889999999999999999987 22333444442 2233333222110000 001111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 241 a~tiAEyfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 241 ATTIAEYFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHHHHHHHcCCCEEEEccchhHH
Confidence 334555554 479999999998543
No 379
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.49 E-value=0.078 Score=43.21 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhcceEE
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVARKVDF 200 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~~~~w 200 (566)
....++|+|..|.|||||++.+....++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~~G~i~ 41 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELIKRKHR 41 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhhCCeEE
Confidence 3478999999999999999998753333
No 380
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.44 E-value=0.16 Score=46.71 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 45678888888777655544 35889999999999999998876
No 381
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.44 E-value=0.066 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.|.|+|+.|.||||+|+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35689999999999999999997
No 382
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.43 E-value=0.26 Score=51.00 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=48.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCC-------Ccccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLV-------SCEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~-------~~~~~~------~~~ 232 (566)
.....++|+|..|+|||||.+.+.. .++...+... ..+..+...+...-... ..+.+. ...
T Consensus 173 ~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~ 252 (455)
T PRK07960 173 GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAY 252 (455)
T ss_pred cCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 3557899999999999999999987 1222233332 34444444443221111 001111 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-++++ .|+++|+++||+-..
T Consensus 253 a~tiAEyfrd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 253 ATRIAEDFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHHHHHHHcCCCeEEEecchhHH
Confidence 334555553 378999999998543
No 383
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.42 E-value=0.056 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|+.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998877
No 384
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.41 E-value=0.28 Score=50.71 Aligned_cols=85 Identities=14% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEecc-CCCHHHHHHHHHHHcCCCC-------ccc------chHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQ-NPNIKIIQGDIAEKLGLVS-------CEK------VETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~-~~~~~~i~~~i~~~l~~~~-------~~~------~~~~~ 232 (566)
.....++|+|..|+|||||++.+.. ......+.. ...+..+....+..-+... .+. .....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~ 232 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATEL 232 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHH
Confidence 4567899999999999999999887 112222322 2233344434333322110 000 11122
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 233 ANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
...+-+++. .++++|+++||+-..
T Consensus 233 a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 233 CHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHhhhccCCEEEeecchhHH
Confidence 333444443 378999999998643
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.27 Score=50.89 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhc---CCeE
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKR---EKKI 246 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~kr~ 246 (566)
..+..+.+.|.+|+|||+||..++. ..-||.+-.+-++. ..++......+.+.+.. ..--
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi---------------G~sEsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI---------------GLSESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc---------------CccHHHHHHHHHHHHHHhhcCcce
Confidence 3567788999999999999999988 22334333221111 11222233333333321 2456
Q ss_pred EEEEeCCCCccccccccccc
Q 045507 247 LIVLDNIWKHVDLESIGIPF 266 (566)
Q Consensus 247 LlVlDdv~~~~~~~~~~~~~ 266 (566)
.||+||+....+|-.++..|
T Consensus 601 iivvDdiErLiD~vpIGPRf 620 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRF 620 (744)
T ss_pred EEEEcchhhhhcccccCchh
Confidence 89999999888998887654
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.39 E-value=0.5 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=19.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999665543
No 387
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.36 E-value=0.052 Score=28.08 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=7.4
Q ss_pred cCcEEEecCCccccCC
Q 045507 480 KLKDVDMARMWLFSLP 495 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~lp 495 (566)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 388
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.35 E-value=0.22 Score=52.62 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc--------c-eEEEEeccCC-CHHHHHHHHHHHcCC-CCccc-----
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR--------K-VDFSEVSQNP-NIKIIQGDIAEKLGL-VSCEK----- 227 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~--------~-~~wv~v~~~~-~~~~i~~~i~~~l~~-~~~~~----- 227 (566)
+++.+. -......+|+|.+|+|||||++.+.+ . ++.+-|...+ .+..+.+.+-..+-. ..+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~ 485 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHT 485 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHH
Confidence 344443 23457789999999999999999887 1 2344444443 344444443111111 11111
Q ss_pred chHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 228 VETRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 228 ~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
........+-+++. .|+.+||++|++-..
T Consensus 486 ~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 486 TVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 11223344555553 478999999998643
No 389
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.33 E-value=0.069 Score=44.58 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|+|..|+|||||.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 68999999999999999887
No 390
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.32 E-value=0.17 Score=53.64 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=43.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhcceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEE
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVL 250 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVl 250 (566)
.....+|.++|.+|+||||+|+.++...-|+.+++.. +. . .........+.|..|+. +|+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~-lg----~-------------~~~~~~~a~~~L~~G~s--VVI 425 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADT-LG----S-------------TQNCLTACERALDQGKR--CAI 425 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHH-HH----H-------------HHHHHHHHHHHHhCCCc--EEE
Confidence 3467899999999999999999998854466665531 10 0 12234456667776543 677
Q ss_pred eCCCC
Q 045507 251 DNIWK 255 (566)
Q Consensus 251 Ddv~~ 255 (566)
|+...
T Consensus 426 DaTn~ 430 (526)
T TIGR01663 426 DNTNP 430 (526)
T ss_pred ECCCC
Confidence 88753
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.32 E-value=0.073 Score=45.79 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++|+|..|+|||||.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 46899999999999999999877
No 392
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.27 E-value=0.19 Score=51.90 Aligned_cols=90 Identities=24% Similarity=0.222 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCC-CHHHHHHHHHHHcCCCCcccchHHH
Q 045507 158 RLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNP-NIKIIQGDIAEKLGLVSCEKVETRR 232 (566)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~-~~~~i~~~i~~~l~~~~~~~~~~~~ 232 (566)
|.....++.+.+..... ++.|.|+-++||||+++.+.. ..++++..+.. +...+ .+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~---------------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDL---------------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHH----------------
Confidence 44455666665543333 999999999999999977766 23444443321 11111 111
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCccccccccccc
Q 045507 233 ANRLYERLKREKKILIVLDNIWKHVDLESIGIPF 266 (566)
Q Consensus 233 ~~~l~~~l~~~kr~LlVlDdv~~~~~~~~~~~~~ 266 (566)
.....+.-.. ++..|+||.|.....|......+
T Consensus 84 ~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l 116 (398)
T COG1373 84 LRAYIELKER-EKSYIFLDEIQNVPDWERALKYL 116 (398)
T ss_pred HHHHHHhhcc-CCceEEEecccCchhHHHHHHHH
Confidence 1111111111 56899999999998887654333
No 393
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.25 E-value=0.094 Score=46.09 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=17.3
Q ss_pred EEecCCCcHHHHHHHHhc
Q 045507 179 VYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 179 I~G~gGiGKTtLa~~v~~ 196 (566)
|+|.+|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999999
No 394
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.0068 Score=57.12 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC--hhhhcccccce
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP--SSIDLLVNLQI 506 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~L~~L~~ 506 (566)
..+++-|++.+|.+.++.-...++.|+.|.|+-|. ...+.. +..++.|+.|.|..|.|..+- .-+.+|++||.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNk---IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNK---ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccc---cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45667777888888777665678889999888765 344433 467889999999999887764 45688999999
Q ss_pred eeccCcccCC--c-----cccccCccCcEEec
Q 045507 507 LCLHQYMLGD--I-----AIIGKLKNLEILSI 531 (566)
Q Consensus 507 L~L~~~~l~~--p-----~~i~~L~~L~~L~l 531 (566)
|.|..|.... + .-+.-|++|+.||=
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999987433 3 23567888888873
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.24 E-value=0.063 Score=46.36 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.|+|..|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 396
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.24 E-value=0.39 Score=49.51 Aligned_cols=84 Identities=23% Similarity=0.376 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccc------hHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKV------ETRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~------~~~~ 232 (566)
.....++|+|..|.|||||++.+.+ ......+... ..+.++.......-.... .+.+ ....
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~ 214 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFY 214 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 3456799999999999999998887 2223344443 334455555443311110 1111 1112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 233 ANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
...+-++++ .|+++|+++||+-.
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 215 ATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHCCCCEEEEEeChHH
Confidence 334555553 37899999999854
No 397
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.22 E-value=0.22 Score=46.55 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.|.|.+|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 398
>PRK04296 thymidine kinase; Provisional
Probab=93.21 E-value=0.15 Score=46.76 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=41.3
Q ss_pred eEEEEEecCCCcHHHHHHHHhc------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc---cchHHHHHHHHHHHhcCCe
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE---KVETRRANRLYERLKREKK 245 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~kr 245 (566)
.++.|+|..|.||||+|..+.. ....+- ...++.......++++++..... ....+....+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~-k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF-KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE-eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 5788999999999999987766 222221 12122222233455555543222 112223333333 23344
Q ss_pred EEEEEeCC
Q 045507 246 ILIVLDNI 253 (566)
Q Consensus 246 ~LlVlDdv 253 (566)
-+||+|.+
T Consensus 80 dvviIDEa 87 (190)
T PRK04296 80 DCVLIDEA 87 (190)
T ss_pred CEEEEEcc
Confidence 58999998
No 399
>PRK05439 pantothenate kinase; Provisional
Probab=93.20 E-value=0.12 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 400
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.14 E-value=0.46 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 401
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.13 E-value=0.41 Score=49.49 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc------ceEEEEecc-CCCHHHHHHHHHHHcCCCCc-------ccch------HH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQ-NPNIKIIQGDIAEKLGLVSC-------EKVE------TR 231 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~-~~~~~~i~~~i~~~l~~~~~-------~~~~------~~ 231 (566)
.....++|+|..|.|||||++.++. .++. -+.+ .....++....+..-+.... +.+. ..
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 3457889999999999999999887 2222 2333 35566666655544322110 1111 11
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 232 RANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 232 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
....+-++++ .+++.||++||+-..
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHH
Confidence 2334445553 378999999998644
No 402
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.13 E-value=0.13 Score=53.88 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.3
Q ss_pred CCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+.+++..+.. ..+.++|..|+||||+|+.+.+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999887665 5688999999999999999987
No 403
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.08 E-value=0.15 Score=45.01 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+++|.+++.+ +++.++|..|+|||||...+..
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHT
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHh
Confidence 5666666644 8999999999999999998886
No 404
>PRK13946 shikimate kinase; Provisional
Probab=93.08 E-value=0.073 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.|.++|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999998
No 405
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.35 Score=48.68 Aligned_cols=81 Identities=32% Similarity=0.404 Sum_probs=53.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc--chHHHHHHHHHHHhcCC
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK--VETRRANRLYERLKREK 244 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~k 244 (566)
..+++.|=|-+|||||||.-++.. .+.+| +..-++.++- --++.++...+.. -.....+.+.+.+.+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYV--sGEES~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYV--SGEESLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEE--eCCcCHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 357899999999999999998887 35554 4444444432 2345666443332 12234566667776668
Q ss_pred eEEEEEeCCCCc
Q 045507 245 KILIVLDNIWKH 256 (566)
Q Consensus 245 r~LlVlDdv~~~ 256 (566)
.-++|+|-+...
T Consensus 169 p~lvVIDSIQT~ 180 (456)
T COG1066 169 PDLVVIDSIQTL 180 (456)
T ss_pred CCEEEEecccee
Confidence 899999998654
No 406
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.01 E-value=0.43 Score=47.26 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCH
Q 045507 154 SFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNI 209 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~ 209 (566)
+++=..+....++.++.. .+.|.|.|..|+||||+|+.+.. ...-|+.+.....
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~ 103 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSR 103 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCCh
Confidence 343344455667766653 34699999999999999999988 3344444444433
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.01 E-value=0.33 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHh
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVA 195 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~ 195 (566)
.+++.++|.+|+||||++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999776553
No 408
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.00 E-value=0.25 Score=50.49 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHHHHhc--------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD--------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.++.++.+..++.. ...+.+.++|+.|+||||+|+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 3578888888888776642 0136789999999999999999988
No 409
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.00 E-value=0.17 Score=50.29 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.++.++++++.+. +..-+++-++|+.|.||||||+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999886 34568999999999999999998887
No 410
>PHA02244 ATPase-like protein
Probab=92.99 E-value=0.25 Score=49.64 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEec
Q 045507 163 KAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVS 204 (566)
Q Consensus 163 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~ 204 (566)
..+..++.. + .-|.|+|..|+|||++|+++++ ..-|+.++
T Consensus 110 ~ri~r~l~~-~-~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 110 ADIAKIVNA-N-IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHHhc-C-CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344444433 2 2467799999999999999998 44455554
No 411
>PRK04182 cytidylate kinase; Provisional
Probab=92.98 E-value=0.08 Score=47.95 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 412
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.96 E-value=0.56 Score=45.24 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCcHHHHH-HHHhc------ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccchHH------
Q 045507 173 NVSIIGVYGMGGIGKTTLV-KEVAR------KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKVETR------ 231 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa-~~v~~------~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~------ 231 (566)
..+-++|+|-.|+|||+|| ..+.+ .++++-+.+.. ...++..++.+.-.... .+++...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~ 147 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPY 147 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHH
Confidence 4577899999999999996 55654 23556666554 45566666654321110 1111111
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 232 RANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 232 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
....+-+++. .|+.+|+++||+-..
T Consensus 148 ~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 148 TGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1234445543 368999999998543
No 413
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.96 E-value=0.44 Score=49.57 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=47.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccch------HHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKVE------TRR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~~------~~~ 232 (566)
.....++|+|..|.|||||.+.+.. ......+... ..+..+.......-+... .+... ...
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~ 240 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYV 240 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHH
Confidence 3456789999999999999999987 1222333332 234444444333211110 00100 112
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 233 ANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
...+-+++. .|+++|+++||+-.
T Consensus 241 a~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 241 ATAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHCCCCEEEEEeChHH
Confidence 233445553 47899999999854
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.94 E-value=0.42 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|++++|..|+||||++..++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999988875
No 415
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.94 E-value=0.42 Score=50.03 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCCcHHHHH-HHHhc------ceEEEEeccCC-CHHHHHHHHHHHcCCCCc-------ccch------H
Q 045507 172 LNVSIIGVYGMGGIGKTTLV-KEVAR------KVDFSEVSQNP-NIKIIQGDIAEKLGLVSC-------EKVE------T 230 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa-~~v~~------~~~wv~v~~~~-~~~~i~~~i~~~l~~~~~-------~~~~------~ 230 (566)
...+.++|.|-.|+|||||| ..+.+ .++++-+++.. .+.++...+...-..... +.+. .
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap 239 (497)
T TIGR03324 160 GRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAP 239 (497)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHH
Confidence 34577899999999999996 46776 25777777664 456666666544222111 1110 0
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 231 RRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 231 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
-....+-++++ +|+++|||+||+...
T Consensus 240 ~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 240 YAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 12334556664 479999999998643
No 416
>PRK14526 adenylate kinase; Provisional
Probab=92.94 E-value=0.26 Score=45.97 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|+|++|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999886
No 417
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.48 Score=47.47 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHHh-cCCceE-EEEEecCCCcHHHHHHHHhc
Q 045507 155 FESRLSTLKAIQNALS-DLNVSI-IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~-~~~~~v-v~I~G~gGiGKTtLa~~v~~ 196 (566)
+++-+....++..+.. .++... +.++|+.|+||||+|..+.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence 4566777888888877 445666 99999999999999998887
No 418
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.90 E-value=0.25 Score=53.81 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHHHHcCC
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIAEKLGL 222 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~~~l~~ 222 (566)
....+.|.+..++.+...+... +.+.++|.+|.||||+|+.+.+ ..+|..- .......+.+.+...++.
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 3456789888888887766654 4789999999999999999988 3345333 334566777777766654
No 419
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.87 E-value=0.46 Score=46.01 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=42.0
Q ss_pred HHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHH
Q 045507 164 AIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYER 239 (566)
Q Consensus 164 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 239 (566)
+|...|.. ...-..++|.||+||+|+++.+.. ..+-+.+++.++..+...++-. .+.+.
T Consensus 22 ri~RvL~~-~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~----------------~~~~a 84 (268)
T PF12780_consen 22 RISRVLSQ-PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKK----------------ALQKA 84 (268)
T ss_dssp HHHHHHCS-TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHH----------------HHHHH
T ss_pred HHHHHHcC-CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHH----------------HHHHH
Confidence 33344444 345667999999999999998877 3333444555555554333211 11111
Q ss_pred HhcCCeEEEEEeCCC
Q 045507 240 LKREKKILIVLDNIW 254 (566)
Q Consensus 240 l~~~kr~LlVlDdv~ 254 (566)
-..+++..++++|-+
T Consensus 85 g~~~~~~vfll~d~q 99 (268)
T PF12780_consen 85 GIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HCS-S-EEEEEECCC
T ss_pred hccCCCeEEEecCcc
Confidence 113578888888864
No 420
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.82 E-value=0.089 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++.|+|..|.||||+++.+..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999998
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=0.6 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999986643
No 422
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.21 Score=46.53 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=39.6
Q ss_pred CccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccC
Q 045507 154 SFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQN 206 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~ 206 (566)
-+-|-++.+++|.+.+. -.+.+=+.++|.+|.|||-||++||+ .+-|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 34455777777766553 13456688999999999999999999 6677888764
No 423
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.81 E-value=0.33 Score=52.95 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----c--eEEEEeccC-CCHHHHHHHHHHHcCC
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----K--VDFSEVSQN-PNIKIIQGDIAEKLGL 222 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~--~~wv~v~~~-~~~~~i~~~i~~~l~~ 222 (566)
...++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+ . ..++.+..+ .+...+++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhch
Confidence 356788888888777766654 3566999999999999999988 1 223333333 3455667777766654
No 424
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.81 E-value=0.076 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|++|+|..|+||||++..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 425
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.79 E-value=0.13 Score=49.79 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~ 217 (566)
+..+++.|+|.+|+|||++|.++.. .++||++... ...+.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4568999999999999999998877 5788877764 344444443
No 426
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.78 E-value=0.39 Score=47.32 Aligned_cols=54 Identities=26% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCCccchHHHHHH---HHHHHhcC--CceEEEEEecCCCcHHHHHHHHhc----ceEEEEec
Q 045507 151 GYESFESRLSTLKA---IQNALSDL--NVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVS 204 (566)
Q Consensus 151 ~~~~~~gr~~~~~~---l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~ 204 (566)
...+++|..++.+. ++++..++ ..+.|.|+|.+|.|||+||-.+.. .+-|+.++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~is 99 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAIS 99 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeec
Confidence 45678998777654 55555544 468999999999999999999988 34455443
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.76 E-value=0.17 Score=46.93 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|+|.|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999987443
No 428
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.71 E-value=0.25 Score=49.75 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHHHH
Q 045507 155 FESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~~~ 215 (566)
++|+++.+..+...+.. .+.+.+.|.+|+|||+||+.+.. ..+++.+.......++...
T Consensus 26 ~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCc
Confidence 67777777777666553 35678899999999999999998 5566666666666665543
No 429
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.70 E-value=0.5 Score=49.00 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=53.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccch------
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKVE------ 229 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~~------ 229 (566)
...+.++|.|..|+|||||+.++.. .++++-+... ..+.++..++...-.... .+.+.
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3557889999999999999988755 3445555544 345666666654321111 11111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 045507 230 TRRANRLYERLKR--EKKILIVLDNIWKH 256 (566)
Q Consensus 230 ~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 256 (566)
.-....+-++++. |+++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1134456677753 68999999999643
No 430
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.67 E-value=0.11 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+.+.|+|.+|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3568899999999999999999976
No 431
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.66 E-value=0.11 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 432
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.62 E-value=0.52 Score=45.43 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=51.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----------ceEEEEeccC-CCHHHHHHHHHHHcCCCCc-------ccc----
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----------KVDFSEVSQN-PNIKIIQGDIAEKLGLVSC-------EKV---- 228 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~~-------~~~---- 228 (566)
...+.++|.|-.|+|||+|+..+.+ .++++-+.+. ....++..++...-..... +.+
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3457789999999999998877765 2455555554 3566666666543221111 111
Q ss_pred --hHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045507 229 --ETRRANRLYERLKR--EKKILIVLDNIWK 255 (566)
Q Consensus 229 --~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 255 (566)
..-....+-++++. ++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11123456666653 6899999999854
No 433
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.61 E-value=0.34 Score=50.08 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCC-HHHHHHHHHHHcCCCC----------cccc-----hH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPN-IKIIQGDIAEKLGLVS----------CEKV-----ET 230 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~-~~~i~~~i~~~l~~~~----------~~~~-----~~ 230 (566)
.....++|+|..|+|||||++.+.. ......+..... ...+.... ++... ++.. ..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~---l~~~l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKN---LGGDLENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHH---hcCcccceEEEEECCCCCHHHhhHHH
Confidence 4567899999999999999999987 222233333332 23333322 22210 0000 01
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 231 RRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 231 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
.....+-++++ .|+++|+++||+-..
T Consensus 232 ~~a~~iAEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 232 FCAMSVAEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEecccchHH
Confidence 12345566664 379999999998643
No 434
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.61 E-value=0.17 Score=50.10 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHH
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKII 212 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i 212 (566)
+++.+.|-||+||||+|-+..- ...-++.....++..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHH
Confidence 6889999999999999966544 3444444444444433
No 435
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=0.61 Score=51.58 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCC--HHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPN--IKIIQGDIAEKLGLVSCEKVETRRANRLYERLKR 242 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 242 (566)
.+|++++|..|+||||.+..+.. .+..++ .+.+. ..+-++...+.++.+.....+........+.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit-~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT-TDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec-CcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 47999999999999998877764 122332 23333 3344455556665443322222222333334432
Q ss_pred CCeEEEEEeCCC
Q 045507 243 EKKILIVLDNIW 254 (566)
Q Consensus 243 ~kr~LlVlDdv~ 254 (566)
+ =+|++|-.-
T Consensus 264 -~-D~VLIDTAG 273 (767)
T PRK14723 264 -K-HLVLIDTVG 273 (767)
T ss_pred -C-CEEEEeCCC
Confidence 3 366667654
No 436
>PRK10867 signal recognition particle protein; Provisional
Probab=92.59 E-value=0.65 Score=48.19 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=19.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997766544
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.57 E-value=0.087 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.4
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 045507 177 IGVYGMGGIGKTTLVKEVARK 197 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~~ 197 (566)
|+|.|..|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999883
No 438
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.57 E-value=0.3 Score=46.80 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+|+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 439
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.54 E-value=0.099 Score=49.34 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|.++||+|.||||..+.++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHH
Confidence 356788899999999999998877
No 440
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.54 E-value=0.096 Score=48.24 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 441
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.53 E-value=0.69 Score=48.00 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEecc-CCCHHHHHHHHHHHcCCCC-------cccchH------HH
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQ-NPNIKIIQGDIAEKLGLVS-------CEKVET------RR 232 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~-~~~~~~i~~~i~~~l~~~~-------~~~~~~------~~ 232 (566)
.....++|+|..|+|||||.+.+.. ....+.+.. ...+..+..+......... ...+.. ..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~ 222 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYT 222 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHH
Confidence 4567889999999999999999987 222233333 3345555544433221110 011111 12
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 233 ANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 233 ~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
...+-+++. .+++.|+++|++-.
T Consensus 223 a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 223 ATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHCCCcEEEEEeCchH
Confidence 233444443 36899999999964
No 442
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=92.50 E-value=0.86 Score=48.97 Aligned_cols=101 Identities=22% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCccchHHHHHHHHHHHh----c-CCceEEEEEecCCCcHHHHHHHHhc--------------ceEEEEeccCCCHHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----D-LNVSIIGVYGMGGIGKTTLVKEVAR--------------KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----~-~~~~vv~I~G~gGiGKTtLa~~v~~--------------~~~wv~v~~~~~~~~i~ 213 (566)
..+.+|+.+..+|-..+. . +..+.+-|.|.+|.|||..+..|-+ ..+.++.-.-..+.++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 345678999888888775 3 3456899999999999999998887 23344444556799999
Q ss_pred HHHHHHcCCCCcccchHHHHHHHHHHHh----cCCeEEEEEeCCCC
Q 045507 214 GDIAEKLGLVSCEKVETRRANRLYERLK----REKKILIVLDNIWK 255 (566)
Q Consensus 214 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~ 255 (566)
..|...+....... ....+.+..++. ..+.+++++|.++.
T Consensus 476 ~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 476 EKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 99999887654332 223444444443 23568888888753
No 443
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.48 E-value=0.17 Score=47.93 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 161 TLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 161 ~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++++.+. ..+..+|+|.|.+|+||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 3445555554 34678999999999999999987766
No 444
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.48 E-value=0.092 Score=51.39 Aligned_cols=22 Identities=45% Similarity=0.841 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4789999999999999987765
No 445
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.17 Score=53.60 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..+..+.+++..+.+. .+.++|..|+||||+|+.+..
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999998876654 467899999999999999887
No 446
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.47 E-value=0.1 Score=46.76 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 447
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.46 E-value=0.099 Score=46.84 Aligned_cols=20 Identities=50% Similarity=0.672 Sum_probs=17.3
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.|.+|+|||||++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 67999999999999998876
No 448
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.44 E-value=0.12 Score=43.00 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|+|+|..|+|||||...+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 449
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.44 E-value=0.46 Score=48.41 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHH-HHHhc---ceEEEEecc---CCCHHHHHHHHHHHcC
Q 045507 158 RLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLV-KEVAR---KVDFSEVSQ---NPNIKIIQGDIAEKLG 221 (566)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~v~~---~~~wv~v~~---~~~~~~i~~~i~~~l~ 221 (566)
|.+.+++|..||.+..-..|.|.|+-|.||+.|+ .++.. .+..+.+.+ ..+-..+...++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 5677899999999888889999999999999999 66666 566666542 2345566666666664
No 450
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.43 E-value=0.11 Score=44.68 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.|.++|..|+|||||++.+-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999977
No 451
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.42 E-value=0.5 Score=49.17 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=52.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccc------h
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKV------E 229 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~------~ 229 (566)
...+.++|.|..|+|||||+.++.. .++++-+... ..+.++..++...-.... .+.+ .
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3457889999999999999887644 3445555544 345666666665322111 1111 1
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 045507 230 TRRANRLYERLK--REKKILIVLDNIWKH 256 (566)
Q Consensus 230 ~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 256 (566)
......+-++++ +|+++|+++|++-..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 112345666663 479999999998543
No 452
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=92.38 E-value=0.27 Score=42.41 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=31.7
Q ss_pred HhcCCceEEEEEecCCCcHHH--HHHHHhcceEEEEeccC
Q 045507 169 LSDLNVSIIGVYGMGGIGKTT--LVKEVARKVDFSEVSQN 206 (566)
Q Consensus 169 L~~~~~~vv~I~G~gGiGKTt--La~~v~~~~~wv~v~~~ 206 (566)
+..++-++|||-||+-+|||. +|..||-..-|.-+|.+
T Consensus 49 ~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKrW~f~SST 88 (192)
T PF11868_consen 49 FKEEGHKLIGIRGMPRVGKTESIVAASVCANKRWLFLSST 88 (192)
T ss_pred HHhcCceEEeecCCCccCchhHHHHHhhhcCceEEEeeHH
Confidence 346788999999999999995 56777888889988875
No 453
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.38 E-value=0.1 Score=46.86 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.|+|+.|+||||+|+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999998
No 454
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.35 E-value=0.12 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..-++.|+|+|..|.|||||++.+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999999999999987
No 455
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.35 E-value=0.12 Score=45.72 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998876
No 456
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.34 E-value=0.1 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+-|.++||.|+||||+.+.+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3578899999999999999987
No 457
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.31 E-value=0.098 Score=50.36 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 045507 177 IGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~ 196 (566)
|.++|.+|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999876
No 458
>PLN02796 D-glycerate 3-kinase
Probab=92.27 E-value=0.11 Score=51.75 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999999987
No 459
>PRK15453 phosphoribulokinase; Provisional
Probab=92.26 E-value=0.13 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 460
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.26 E-value=0.24 Score=49.20 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHH
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQG 214 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~ 214 (566)
.+++.+.|-||+||||+|-+..- ...-|++....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999987433 344555544455555443
No 461
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.47 Score=46.16 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|+|.++|++|.|||+|.+++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQ 199 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQ 199 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHH
Confidence 48899999999999999999998
No 462
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.26 E-value=0.11 Score=44.82 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
|+-..++++.+.+. ......|.|.|-.|.||+++|+.++.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 44455566655554 24456678999999999999999988
No 463
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.25 E-value=0.52 Score=48.89 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=53.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC-CHHHHHHHHHHHcCCCC-------cccc------hH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP-NIKIIQGDIAEKLGLVS-------CEKV------ET 230 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~-~~~~i~~~i~~~l~~~~-------~~~~------~~ 230 (566)
..+.++|.|..|+|||+|+.++.. .++++-+.+.. ...++.+++...-.... .+.+ ..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 457889999999999999987644 34566665554 45566666554321110 1111 11
Q ss_pred HHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 045507 231 RRANRLYERLKR--EKKILIVLDNIWKH 256 (566)
Q Consensus 231 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 256 (566)
.....+-++++. |+++|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 234456677764 79999999998643
No 464
>PRK06620 hypothetical protein; Validated
Probab=92.24 E-value=0.11 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.+-|+|..|+|||+|++.+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 6689999999999999998877
No 465
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.21 E-value=0.32 Score=48.55 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=33.4
Q ss_pred CCCCccchHHHHHH---HHHHHhcCC--ceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKA---IQNALSDLN--VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~---l~~~L~~~~--~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|..++.+. +++++.... .+.+.|.|.+|.|||+||..+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~ 72 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK 72 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH
Confidence 34689998777654 555555543 68999999999999999999988
No 466
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.20 E-value=0.13 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|.|||||++.++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998876
No 467
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.20 E-value=0.11 Score=41.33 Aligned_cols=21 Identities=52% Similarity=0.790 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999987766
No 468
>PLN02348 phosphoribulokinase
Probab=92.19 E-value=0.13 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998775
No 469
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.19 E-value=0.49 Score=49.31 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccc------h
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKV------E 229 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~------~ 229 (566)
...+.++|+|..|+|||||+.++.+ .++++-+... ..+.++...+...-.... .+.+ .
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3457899999999999999866655 3345555544 345566666654322111 0111 1
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045507 230 TRRANRLYERLKR--EKKILIVLDNIWK 255 (566)
Q Consensus 230 ~~~~~~l~~~l~~--~kr~LlVlDdv~~ 255 (566)
......+-++++. |+++|+++|++-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1224456666642 6899999999854
No 470
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.18 E-value=1 Score=44.99 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc-----ceEEEEeccCC-CHHHHHHHHHHHc----CCC----------Ccccch--
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNP-NIKIIQGDIAEKL----GLV----------SCEKVE-- 229 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~-~~~~i~~~i~~~l----~~~----------~~~~~~-- 229 (566)
.....++|.|..|+|||+|++++.+ .++++-+.+.. .+.+++.++-+.. +.. ..++..
T Consensus 155 ~kGqr~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~ 234 (369)
T cd01134 155 VKGGTAAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAA 234 (369)
T ss_pred cCCCEEEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHH
Confidence 3456899999999999999999988 45566666553 4455555543211 111 011111
Q ss_pred ----HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 045507 230 ----TRRANRLYERLK-REKKILIVLDNIW 254 (566)
Q Consensus 230 ----~~~~~~l~~~l~-~~kr~LlVlDdv~ 254 (566)
.-....+-++++ .|+.+|+++|++.
T Consensus 235 R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 235 REASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 112334555554 3789999999984
No 471
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.18 E-value=0.18 Score=54.32 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=39.1
Q ss_pred CCCccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVS-IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|..++.++... .+.++|..|+||||+|+.+.+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999876654 588999999999999999988
No 472
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.17 E-value=0.19 Score=53.36 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=33.4
Q ss_pred CccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSD-----LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.-..+-++++..||.. ...+++.+.|++|+||||.++.+++
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 333345567788888762 2357999999999999999999988
No 473
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.17 E-value=0.2 Score=48.78 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=26.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHH
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIK 210 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~ 210 (566)
++|+|.|-||+||||++..+.. .+.-|......+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 5788889999999999988776 45666665554443
No 474
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.17 E-value=0.17 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|++|+|++|+|||||.|-+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 457999999999999999998876
No 475
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.16 E-value=0.4 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.|+|..|.|||.|++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~ 336 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH 336 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999988
No 476
>PRK08356 hypothetical protein; Provisional
Probab=92.15 E-value=0.14 Score=47.25 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|++|+||||+|+.+-.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999955
No 477
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.15 E-value=0.31 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..|+|.|..|+||||+|+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 478
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.12 E-value=0.13 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 457899999999999999999876
No 479
>PLN02674 adenylate kinase
Probab=92.12 E-value=0.37 Score=45.87 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=24.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhcceEEEEecc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVARKVDFSEVSQ 205 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~~ 205 (566)
...|.|.|++|+||||+|+.+....-|.+++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 35578999999999999999998444455443
No 480
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.11 E-value=0.67 Score=47.96 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhcc--------------------eEEEEeccCCCHHHHHHHHHHHcC-CCCc-----
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVARK--------------------VDFSEVSQNPNIKIIQGDIAEKLG-LVSC----- 225 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~~--------------------~~wv~v~~~~~~~~i~~~i~~~l~-~~~~----- 225 (566)
...+-++|.|-.|+|||||+.++.+. ++++-+.+.....+.+.+.+..-+ ....
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 34577899999999999999988751 244455666555565555555444 2111
Q ss_pred --ccch------HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 045507 226 --EKVE------TRRANRLYERLK--REKKILIVLDNIWK 255 (566)
Q Consensus 226 --~~~~------~~~~~~l~~~l~--~~kr~LlVlDdv~~ 255 (566)
+.+. .-....+-++++ .|+++|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 112345667776 37999999999854
No 481
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.11 E-value=0.22 Score=47.96 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=41.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 149 HKGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.....+.|.+..+.-+.+.+......+...+|++|.|||+-|+.+..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 344567889999999999998887889999999999999999988876
No 482
>PRK06761 hypothetical protein; Provisional
Probab=92.07 E-value=0.12 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++|.|.|.+|+||||+++.+++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 483
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.06 E-value=0.13 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++++|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998877
No 484
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.05 E-value=0.14 Score=48.88 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|+.|+|||||.+.++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3468999999999999999999988
No 485
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.03 E-value=0.25 Score=49.30 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=26.9
Q ss_pred HHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++.+. ..+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344555443 45678999999999999999998765
No 486
>PLN02924 thymidylate kinase
Probab=92.02 E-value=0.77 Score=43.15 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|+|-|..|+||||+|+.+++
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~ 38 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVS 38 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 487
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.00 E-value=0.13 Score=45.44 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|++|+|..|+|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999988865
No 488
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.99 E-value=0.11 Score=47.24 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 489
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.98 E-value=0.81 Score=48.70 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=26.9
Q ss_pred CceEEEEEecCCCcHHHHHHHH-hc-------ceEEEEecc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEV-AR-------KVDFSEVSQ 205 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v-~~-------~~~wv~v~~ 205 (566)
..+++.|.|.+|.||||+|.++ |+ ..+||++..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4689999999999999999987 33 567777754
No 490
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.98 E-value=0.18 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....+|+|+|.+|+||||++..+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998766
No 491
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.98 E-value=1.2 Score=42.47 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=30.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~ 217 (566)
...++.|.|.+|+|||+++.++.. .++|++... +..++...++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 346899999999999999987755 456665544 4445555443
No 492
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.96 E-value=0.17 Score=55.41 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=38.5
Q ss_pred CCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.|..++..+.+ ..+.++|..|+||||+|+.++.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45678999999999999887665 4568999999999999999987
No 493
>PRK12338 hypothetical protein; Provisional
Probab=91.96 E-value=0.17 Score=49.99 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=24.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhcceEEEEe
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVARKVDFSEV 203 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v 203 (566)
..+|.|.|.+|+||||+|+.+....-|.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 468999999999999999999984434444
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.96 E-value=0.14 Score=50.91 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++++|.+|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999998876
No 495
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.95 E-value=0.14 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|.|||||.+.+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998876
No 496
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.94 E-value=0.15 Score=46.27 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|.|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999875
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.93 E-value=0.14 Score=48.06 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|.|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999887
No 498
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.92 E-value=0.13 Score=45.61 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|+++|.+|+|||||+..+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
No 499
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.91 E-value=0.5 Score=49.30 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcHHHHH-HHHhc------ceEEEEeccC-CCHHHHHHHHHHHcCCCC-------cccchHH-----
Q 045507 172 LNVSIIGVYGMGGIGKTTLV-KEVAR------KVDFSEVSQN-PNIKIIQGDIAEKLGLVS-------CEKVETR----- 231 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa-~~v~~------~~~wv~v~~~-~~~~~i~~~i~~~l~~~~-------~~~~~~~----- 231 (566)
...+.++|.|-.|+|||||| ..+.+ .++++-+++. ..+.++...+...-.... .+.+...
T Consensus 139 grGQR~~I~g~~g~GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap 218 (485)
T CHL00059 139 GRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAP 218 (485)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHH
Confidence 34578899999999999995 45655 3467777655 345666666654321111 0111110
Q ss_pred -HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 232 -RANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 232 -~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
....+-++++ +|+++|+|+||+...
T Consensus 219 ~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 219 YTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 1233555554 379999999998654
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.87 E-value=0.17 Score=46.03 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+++.|+|+.|+|||||++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
Done!